Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54317.t1 | XP_003593758.1 | 83.1 | 148 | 21 | 2 | 1 | 148 | 1 | 144 | 7.20E-44 | 186.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54317.t1 | P82244 | 72.6 | 84 | 23 | 0 | 65 | 148 | 65 | 148 | 2.4e-24 | 113.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54317.t1 | G7ILH9 | 83.1 | 148 | 21 | 2 | 1 | 148 | 1 | 144 | 5.2e-44 | 186.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene54317 | 0.852585 | 4.19E-61 | -1.69E-46 |
| MS.gene049284 | MS.gene54317 | 0.848706 | 5.17E-60 | -1.69E-46 |
| MS.gene049351 | MS.gene54317 | 0.845894 | 3.05E-59 | -1.69E-46 |
| MS.gene049427 | MS.gene54317 | 0.88436 | 2.05E-71 | -1.69E-46 |
| MS.gene049491 | MS.gene54317 | 0.835105 | 2.04E-56 | -1.69E-46 |
| MS.gene049614 | MS.gene54317 | 0.810367 | 1.19E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene54317 | 0.871774 | 5.29E-67 | -1.69E-46 |
| MS.gene049662 | MS.gene54317 | 0.866203 | 3.38E-65 | -1.69E-46 |
| MS.gene049758 | MS.gene54317 | 0.821947 | 3.08E-53 | -1.69E-46 |
| MS.gene049760 | MS.gene54317 | 0.831476 | 1.63E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene54317 | 0.840296 | 9.47E-58 | -1.69E-46 |
| MS.gene050076 | MS.gene54317 | 0.877694 | 5.12E-69 | -1.69E-46 |
| MS.gene050301 | MS.gene54317 | 0.883586 | 3.96E-71 | -1.69E-46 |
| MS.gene050397 | MS.gene54317 | 0.838846 | 2.26E-57 | -1.69E-46 |
| MS.gene050404 | MS.gene54317 | 0.842577 | 2.38E-58 | -1.69E-46 |
| MS.gene050406 | MS.gene54317 | 0.849623 | 2.87E-60 | -1.69E-46 |
| MS.gene050432 | MS.gene54317 | 0.848822 | 4.80E-60 | -1.69E-46 |
| MS.gene050464 | MS.gene54317 | 0.846027 | 2.81E-59 | -1.69E-46 |
| MS.gene050529 | MS.gene54317 | 0.881042 | 3.33E-70 | -1.69E-46 |
| MS.gene050593 | MS.gene54317 | 0.808573 | 2.90E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene54317 | 0.865512 | 5.60E-65 | -1.69E-46 |
| MS.gene050767 | MS.gene54317 | 0.849988 | 2.27E-60 | -1.69E-46 |
| MS.gene050770 | MS.gene54317 | 0.851895 | 6.59E-61 | -1.69E-46 |
| MS.gene050781 | MS.gene54317 | 0.81642 | 5.58E-52 | -1.69E-46 |
| MS.gene050783 | MS.gene54317 | 0.87266 | 2.68E-67 | -1.69E-46 |
| MS.gene050812 | MS.gene54317 | 0.855408 | 6.44E-62 | -1.69E-46 |
| MS.gene05100 | MS.gene54317 | 0.823856 | 1.11E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene54317 | 0.897726 | 1.06E-76 | -1.69E-46 |
| MS.gene05105 | MS.gene54317 | 0.844707 | 6.40E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene54317 | 0.830547 | 2.76E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene54317 | 0.864331 | 1.31E-64 | -1.69E-46 |
| MS.gene051582 | MS.gene54317 | 0.856067 | 4.13E-62 | -1.69E-46 |
| MS.gene051666 | MS.gene54317 | 0.895533 | 8.76E-76 | -1.69E-46 |
| MS.gene051692 | MS.gene54317 | 0.81764 | 2.97E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene54317 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene051877 | MS.gene54317 | 0.835676 | 1.46E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene54317 | 0.889773 | 1.79E-73 | -1.69E-46 |
| MS.gene052188 | MS.gene54317 | 0.844419 | 7.65E-59 | -1.69E-46 |
| MS.gene052253 | MS.gene54317 | 0.858442 | 8.21E-63 | -1.69E-46 |
| MS.gene052271 | MS.gene54317 | 0.802567 | 5.28E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene54317 | 0.850029 | 2.21E-60 | -1.69E-46 |
| MS.gene052310 | MS.gene54317 | 0.894193 | 3.10E-75 | -1.69E-46 |
| MS.gene052322 | MS.gene54317 | 0.843705 | 1.19E-58 | -1.69E-46 |
| MS.gene052326 | MS.gene54317 | 0.886211 | 4.17E-72 | -1.69E-46 |
| MS.gene052340 | MS.gene54317 | 0.835383 | 1.73E-56 | -1.69E-46 |
| MS.gene052379 | MS.gene54317 | 0.825693 | 4.08E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene54317 | 0.839868 | 1.22E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene54317 | 0.847276 | 1.28E-59 | -1.69E-46 |
| MS.gene052484 | MS.gene54317 | 0.816597 | 5.10E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene54317 | 0.829836 | 4.12E-55 | -1.69E-46 |
| MS.gene052982 | MS.gene54317 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene54317 | 0.823627 | 1.25E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene54317 | 0.853811 | 1.87E-61 | -1.69E-46 |
| MS.gene053104 | MS.gene54317 | 0.834333 | 3.19E-56 | -1.69E-46 |
| MS.gene053107 | MS.gene54317 | 0.822714 | 2.04E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene54317 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene54317 | 0.800568 | 1.36E-48 | -1.69E-46 |
| MS.gene053322 | MS.gene54317 | 0.892721 | 1.22E-74 | -1.69E-46 |
| MS.gene053557 | MS.gene54317 | 0.812358 | 4.41E-51 | -1.69E-46 |
| MS.gene053579 | MS.gene54317 | 0.806007 | 1.01E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene54317 | 0.813608 | 2.35E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene54317 | 0.849176 | 3.82E-60 | -1.69E-46 |
| MS.gene053971 | MS.gene54317 | 0.82757 | 1.45E-54 | -1.69E-46 |
| MS.gene054123 | MS.gene54317 | 0.872132 | 4.02E-67 | -1.69E-46 |
| MS.gene054376 | MS.gene54317 | 0.859262 | 4.67E-63 | -1.69E-46 |
| MS.gene05455 | MS.gene54317 | 0.85067 | 1.46E-60 | -1.69E-46 |
| MS.gene054802 | MS.gene54317 | 0.876457 | 1.38E-68 | -1.69E-46 |
| MS.gene054803 | MS.gene54317 | 0.87451 | 6.38E-68 | -1.69E-46 |
| MS.gene054804 | MS.gene54317 | 0.877309 | 6.97E-69 | -1.69E-46 |
| MS.gene054955 | MS.gene54317 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene54317 | 0.824236 | 9.00E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene54317 | 0.873792 | 1.12E-67 | -1.69E-46 |
| MS.gene055254 | MS.gene54317 | 0.827463 | 1.54E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene54317 | 0.855933 | 4.52E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene54317 | 0.839099 | 1.94E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene54317 | 0.862462 | 4.98E-64 | -1.69E-46 |
| MS.gene055412 | MS.gene54317 | 0.842346 | 2.73E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene54317 | 0.871103 | 8.81E-67 | -1.69E-46 |
| MS.gene055428 | MS.gene54317 | 0.861476 | 9.99E-64 | -1.69E-46 |
| MS.gene055499 | MS.gene54317 | 0.869557 | 2.83E-66 | -1.69E-46 |
| MS.gene055533 | MS.gene54317 | 0.821182 | 4.63E-53 | -1.69E-46 |
| MS.gene055647 | MS.gene54317 | 0.816093 | 6.61E-52 | -1.69E-46 |
| MS.gene055896 | MS.gene54317 | 0.856014 | 4.28E-62 | -1.69E-46 |
| MS.gene05592 | MS.gene54317 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene05602 | MS.gene54317 | 0.82048 | 6.71E-53 | -1.69E-46 |
| MS.gene056083 | MS.gene54317 | 0.819869 | 9.26E-53 | -1.69E-46 |
| MS.gene056191 | MS.gene54317 | 0.840041 | 1.10E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene54317 | 0.859966 | 2.87E-63 | -1.69E-46 |
| MS.gene056410 | MS.gene54317 | 0.819371 | 1.20E-52 | -1.69E-46 |
| MS.gene056497 | MS.gene54317 | 0.820436 | 6.86E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene54317 | 0.850036 | 2.20E-60 | -1.69E-46 |
| MS.gene056612 | MS.gene54317 | 0.849674 | 2.78E-60 | -1.69E-46 |
| MS.gene056796 | MS.gene54317 | 0.839037 | 2.01E-57 | -1.69E-46 |
| MS.gene056897 | MS.gene54317 | 0.819774 | 9.73E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene54317 | 0.864536 | 1.13E-64 | -1.69E-46 |
| MS.gene05702 | MS.gene54317 | 0.852348 | 4.90E-61 | -1.69E-46 |
| MS.gene057121 | MS.gene54317 | 0.818297 | 2.11E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene54317 | 0.870689 | 1.21E-66 | -1.69E-46 |
| MS.gene057124 | MS.gene54317 | 0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene057129 | MS.gene54317 | 0.878683 | 2.30E-69 | -1.69E-46 |
| MS.gene057146 | MS.gene54317 | 0.871561 | 6.22E-67 | -1.69E-46 |
| MS.gene057245 | MS.gene54317 | 0.815835 | 7.54E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene54317 | 0.885135 | 1.06E-71 | -1.69E-46 |
| MS.gene05733 | MS.gene54317 | 0.830825 | 2.36E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene54317 | 0.837099 | 6.35E-57 | -1.69E-46 |
| MS.gene057439 | MS.gene54317 | 0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene54317 | 0.825051 | 5.79E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene54317 | 0.824171 | 9.33E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene54317 | 0.859257 | 4.69E-63 | -1.69E-46 |
| MS.gene058007 | MS.gene54317 | 0.801741 | 7.80E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene54317 | 0.857107 | 2.04E-62 | -1.69E-46 |
| MS.gene058082 | MS.gene54317 | 0.837214 | 5.93E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene54317 | 0.823257 | 1.53E-53 | -1.69E-46 |
| MS.gene058233 | MS.gene54317 | 0.877053 | 8.55E-69 | -1.69E-46 |
| MS.gene058276 | MS.gene54317 | 0.817278 | 3.58E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene54317 | 0.898769 | 3.84E-77 | -1.69E-46 |
| MS.gene058323 | MS.gene54317 | 0.807658 | 4.54E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene54317 | 0.828092 | 1.09E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene54317 | 0.939105 | 2.22E-99 | -1.69E-46 |
| MS.gene058787 | MS.gene54317 | 0.838877 | 2.21E-57 | -1.69E-46 |
| MS.gene058928 | MS.gene54317 | 0.828909 | 6.92E-55 | -1.69E-46 |
| MS.gene058993 | MS.gene54317 | 0.813871 | 2.05E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene54317 | 0.857909 | 1.18E-62 | -1.69E-46 |
| MS.gene059141 | MS.gene54317 | 0.81738 | 3.40E-52 | -1.69E-46 |
| MS.gene059326 | MS.gene54317 | 0.826258 | 2.99E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene54317 | 0.839291 | 1.73E-57 | -1.69E-46 |
| MS.gene059518 | MS.gene54317 | 0.805452 | 1.33E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene54317 | 0.897827 | 9.64E-77 | -1.69E-46 |
| MS.gene059597 | MS.gene54317 | 0.893343 | 6.87E-75 | -1.69E-46 |
| MS.gene05959 | MS.gene54317 | 0.814142 | 1.79E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene54317 | 0.862404 | 5.19E-64 | -1.69E-46 |
| MS.gene059688 | MS.gene54317 | 0.892416 | 1.62E-74 | -1.69E-46 |
| MS.gene059692 | MS.gene54317 | 0.896446 | 3.66E-76 | -1.69E-46 |
| MS.gene059695 | MS.gene54317 | 0.899478 | 1.91E-77 | -1.69E-46 |
| MS.gene05984 | MS.gene54317 | 0.825846 | 3.75E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene54317 | 0.835393 | 1.72E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene54317 | 0.802157 | 6.41E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene54317 | 0.89179 | 2.88E-74 | -1.69E-46 |
| MS.gene06037 | MS.gene54317 | 0.821044 | 4.98E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene54317 | 0.848589 | 5.57E-60 | -1.69E-46 |
| MS.gene060407 | MS.gene54317 | 0.812827 | 3.49E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene54317 | 0.860065 | 2.68E-63 | -1.69E-46 |
| MS.gene060818 | MS.gene54317 | 0.807018 | 6.20E-50 | -1.69E-46 |
| MS.gene06090 | MS.gene54317 | 0.83601 | 1.20E-56 | -1.69E-46 |
| MS.gene06092 | MS.gene54317 | 0.808707 | 2.71E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene54317 | 0.838747 | 2.39E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene54317 | 0.870574 | 1.32E-66 | -1.69E-46 |
| MS.gene061051 | MS.gene54317 | -0.852481 | 4.49E-61 | -1.69E-46 |
| MS.gene061150 | MS.gene54317 | 0.803211 | 3.88E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene54317 | 0.881629 | 2.05E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54317.t1 | MTR_2g015790 | 93.919 | 148 | 5 | 2 | 1 | 148 | 1 | 144 | 1.48e-77 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54317.t1 | AT1G29070 | 61.321 | 106 | 34 | 3 | 44 | 148 | 56 | 155 | 2.28e-29 | 105 |
Find 30 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACTCTTCTACCATTTC+AGG | 0.167216 | 2.3:-69542686 | MS.gene54317:intron |
| AAGCAATGGAGAACGAAATT+TGG | 0.248963 | 2.3:+69542754 | None:intergenic |
| TCCAGGTTTGTCACTGGGAT+TGG | 0.354922 | 2.3:-69540484 | MS.gene54317:intron |
| CCATGTCCAGGTTTGTCACT+GGG | 0.366798 | 2.3:-69540489 | MS.gene54317:intron |
| TGTCTTCTAGGTCCAACATT+AGG | 0.373666 | 2.3:+69540453 | None:intergenic |
| TCCATGTCCAGGTTTGTCAC+TGG | 0.393144 | 2.3:-69540490 | MS.gene54317:intron |
| GCCACTATTTGCGTGGCTCT+TGG | 0.405290 | 2.3:+69540257 | None:intergenic |
| GAGTGGAAAGAGAGAGAAGA+AGG | 0.436096 | 2.3:+69542701 | None:intergenic |
| AAACGAATGAGCACAACAAC+TGG | 0.446755 | 2.3:-69540330 | MS.gene54317:CDS |
| GAACTGAGAGAGATTGAAGA+TGG | 0.451682 | 2.3:+69542779 | None:intergenic |
| GTTGGACCTAGAAGACAAAA+TGG | 0.465141 | 2.3:-69540447 | MS.gene54317:CDS |
| TAGAAGACAAAATGGTCGTC+TGG | 0.490410 | 2.3:-69540439 | MS.gene54317:CDS |
| AGTGGGTGCTCTGAATTTCA+TGG | 0.501238 | 2.3:+69542820 | None:intergenic |
| ACCAAGAGCCACGCAAATAG+TGG | 0.502785 | 2.3:-69540258 | MS.gene54317:CDS |
| GAAAGAGAGAGAAGAAGGAG+AGG | 0.509500 | 2.3:+69542706 | None:intergenic |
| AAGTAGATCACGAAAATCAT+TGG | 0.511560 | 2.3:-69540373 | MS.gene54317:CDS |
| AGAGGAAAGAGAAGAAGTGA+AGG | 0.513017 | 2.3:+69542724 | None:intergenic |
| TTGCGTGGCTCTTGGTGCAA+AGG | 0.521900 | 2.3:+69540265 | None:intergenic |
| TTGTTGTGCTCATTCGTTTG+CGG | 0.530347 | 2.3:+69540334 | None:intergenic |
| AAATCATTGGCACGCACTCA+TGG | 0.536974 | 2.3:-69540360 | MS.gene54317:CDS |
| GTGAAGGAGCAATGAAGCAA+TGG | 0.546159 | 2.3:+69542740 | None:intergenic |
| CAATGGAGAACGAAATTTGG+AGG | 0.554985 | 2.3:+69542757 | None:intergenic |
| CTGAATTTCATGGATATCAA+AGG | 0.555430 | 2.3:+69542830 | None:intergenic |
| CGTCTGGTTATAGTAGCAGC+AGG | 0.557576 | 2.3:-69540423 | MS.gene54317:CDS |
| TTGGACTTGAAACCTAATGT+TGG | 0.565813 | 2.3:-69540465 | MS.gene54317:CDS |
| ATTAAAGCGACGACGCGCCA+AGG | 0.568139 | 2.3:-69540298 | MS.gene54317:CDS |
| TACCTGAAATGGTAGAAGAG+TGG | 0.590029 | 2.3:+69542684 | None:intergenic |
| ACTATTTGCCACTATTTGCG+TGG | 0.627313 | 2.3:+69540250 | None:intergenic |
| TTAAAGCGACGACGCGCCAA+GGG | 0.641870 | 2.3:-69540297 | MS.gene54317:CDS |
| TTTGAAGAAGCAGTGAAAGT+GGG | 0.659697 | 2.3:+69542803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAGAAAATAAAAAATT+TGG | + | chr2.3:69542379-69542398 | None:intergenic | 10.0% |
| !!! | AAAAAAAAATGTTTTATTGT+TGG | - | chr2.3:69540785-69540804 | MS.gene54317:intron | 10.0% |
| !!! | AAAAAAAATGTTTTATTGTT+GGG | - | chr2.3:69540786-69540805 | MS.gene54317:intron | 10.0% |
| !!! | AGTAGAAAAATTATTTTAAT+TGG | - | chr2.3:69541838-69541857 | MS.gene54317:intron | 10.0% |
| !!! | ATGTTTTTCTAAAATAAATT+AGG | + | chr2.3:69541602-69541621 | None:intergenic | 10.0% |
| !!! | TACTTTTCTTTTTTAAATTA+CGG | + | chr2.3:69541635-69541654 | None:intergenic | 10.0% |
| !! | AAAAAAACAAGAAATTAAGT+TGG | + | chr2.3:69540466-69540485 | None:intergenic | 15.0% |
| !! | ATATAGTTAAAAAATTTGTC+CGG | - | chr2.3:69542568-69542587 | MS.gene54317:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr2.3:69541376-69541395 | MS.gene54317:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr2.3:69541395-69541376 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr2.3:69541375-69541394 | MS.gene54317:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr2.3:69541394-69541375 | None:intergenic | 15.0% |
| !!! | ACATGTTTTATTTTTGTTAT+TGG | - | chr2.3:69540725-69540744 | MS.gene54317:intron | 15.0% |
| !!! | CACTTTTCATTTTTAAATTA+CGG | - | chr2.3:69541049-69541068 | MS.gene54317:intron | 15.0% |
| !!! | GTTTATTTTAGTTTTCAAAT+TGG | + | chr2.3:69541554-69541573 | None:intergenic | 15.0% |
| !!! | TTATTTTCTCAAATTATGAT+CGG | - | chr2.3:69542385-69542404 | MS.gene54317:intron | 15.0% |
| !! | AAAACATTTCAATCTTATAG+AGG | + | chr2.3:69542234-69542253 | None:intergenic | 20.0% |
| !! | AACAATAAGAAAATAACCTA+AGG | + | chr2.3:69541693-69541712 | None:intergenic | 20.0% |
| !! | ACAAAAATAAAACATGTTTG+AGG | + | chr2.3:69540722-69540741 | None:intergenic | 20.0% |
| !! | ACAATAAGAAAATAACCTAA+GGG | + | chr2.3:69541692-69541711 | None:intergenic | 20.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | - | chr2.3:69541498-69541517 | MS.gene54317:intron | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | - | chr2.3:69541497-69541516 | MS.gene54317:intron | 20.0% |
| !! | TTAAACATAATCTGATACTT+AGG | + | chr2.3:69540654-69540673 | None:intergenic | 20.0% |
| !! | TTCAATCACACTTAATTTAT+TGG | - | chr2.3:69541132-69541151 | MS.gene54317:intron | 20.0% |
| !!! | CATTTAGTTACATTCTTTTA+GGG | - | chr2.3:69540972-69540991 | MS.gene54317:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | - | chr2.3:69541180-69541199 | MS.gene54317:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr2.3:69541180-69541199 | MS.gene54317:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr2.3:69541199-69541180 | None:intergenic | 20.0% |
| !!! | TCATTTAGTTACATTCTTTT+AGG | - | chr2.3:69540971-69540990 | MS.gene54317:intron | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | + | chr2.3:69541236-69541255 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTATTGGTTGT+TGG | - | chr2.3:69540732-69540751 | MS.gene54317:intron | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | + | chr2.3:69541237-69541256 | None:intergenic | 20.0% |
| !!! | TTTTAATTCTAACCAACATA+AGG | - | chr2.3:69540563-69540582 | MS.gene54317:intron | 20.0% |
| !!! | TTTTTTGTGTGATTGAAATT+TGG | - | chr2.3:69540484-69540503 | MS.gene54317:intron | 20.0% |
| ! | AAAACTGAATTGAAACATAC+CGG | + | chr2.3:69541804-69541823 | None:intergenic | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | - | chr2.3:69541526-69541545 | MS.gene54317:intron | 25.0% |
| ! | TCATTGTCAAGTTATTTACA+TGG | + | chr2.3:69542274-69542293 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr2.3:69541467-69541486 | MS.gene54317:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr2.3:69541486-69541467 | None:intergenic | 25.0% |
| !! | ATAGCGGTTGAATTTTTAAT+TGG | - | chr2.3:69540522-69540541 | MS.gene54317:intron | 25.0% |
| !! | GTTTAAGCTTTAGTTAATAG+CGG | - | chr2.3:69540506-69540525 | MS.gene54317:intron | 25.0% |
| !! | TTGTAGTTCTTTTGCAATAA+TGG | - | chr2.3:69542498-69542517 | MS.gene54317:intron | 25.0% |
| !! | TTTCAATCTTATAGAGGTAT+TGG | + | chr2.3:69542228-69542247 | None:intergenic | 25.0% |
| !!! | ACAAGAAATTAAGTTGGAAA+AGG | + | chr2.3:69540460-69540479 | None:intergenic | 25.0% |
| !!! | ACATTATCATCATTGATTCT+AGG | - | chr2.3:69541953-69541972 | MS.gene54317:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | + | chr2.3:69541525-69541544 | None:intergenic | 25.0% |
| !!! | ATTAAGTTGGAAAAGGAAAA+AGG | + | chr2.3:69540453-69540472 | None:intergenic | 25.0% |
| !!! | CAAACTAGTTCTATTCAATT+CGG | + | chr2.3:69541772-69541791 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | - | chr2.3:69541239-69541258 | MS.gene54317:intron | 25.0% |
| AAATCAAGTCAAGCTAAATC+CGG | + | chr2.3:69542590-69542609 | None:intergenic | 30.0% | |
| AAGTAGATCACGAAAATCAT+TGG | - | chr2.3:69542738-69542757 | MS.gene54317:CDS | 30.0% | |
| AGTTATTTACATGGAATCCT+TGG | + | chr2.3:69542265-69542284 | None:intergenic | 30.0% | |
| ATTAGGCTTAATTGCATGTT+TGG | + | chr2.3:69541585-69541604 | None:intergenic | 30.0% | |
| CTGAATTTCATGGATATCAA+AGG | + | chr2.3:69540284-69540303 | None:intergenic | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr2.3:69541466-69541485 | MS.gene54317:intron | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr2.3:69541485-69541466 | None:intergenic | 30.0% | |
| GACTTCAATGATCTTTACAA+AGG | + | chr2.3:69542191-69542210 | None:intergenic | 30.0% | |
| TGTAACTAAATGAACAGCAT+AGG | + | chr2.3:69540964-69540983 | None:intergenic | 30.0% | |
| TTATGCTTCTGCATTTGTAA+TGG | - | chr2.3:69540889-69540908 | MS.gene54317:intron | 30.0% | |
| ! | AACTAGTTTGAATGTAGTAC+CGG | - | chr2.3:69541782-69541801 | MS.gene54317:intron | 30.0% |
| ! | ACTTCATGTCAAAGTTTGTT+TGG | - | chr2.3:69542323-69542342 | MS.gene54317:intron | 30.0% |
| ! | CTGCATTTGTAATGGAAAAT+GGG | - | chr2.3:69540897-69540916 | MS.gene54317:intron | 30.0% |
| ! | TCTGCATTTGTAATGGAAAA+TGG | - | chr2.3:69540896-69540915 | MS.gene54317:intron | 30.0% |
| ! | TGCATTTGTAATGGAAAATG+GGG | - | chr2.3:69540898-69540917 | MS.gene54317:intron | 30.0% |
| ! | TGGAATGAAGGTTTCATTTT+TGG | - | chr2.3:69540838-69540857 | MS.gene54317:intron | 30.0% |
| ! | TGTTGATATTGCTTTAGCTT+TGG | - | chr2.3:69541916-69541935 | MS.gene54317:intron | 30.0% |
| ! | TTGTTGGTTAGTTATGCAAT+TGG | - | chr2.3:69540748-69540767 | MS.gene54317:intron | 30.0% |
| !! | TATTGGCTTAATTGCATGTT+TGG | - | chr2.3:69541149-69541168 | MS.gene54317:intron | 30.0% |
| !!! | AAATGTTTTTTCAACTGCCA+AGG | - | chr2.3:69542245-69542264 | MS.gene54317:intron | 30.0% |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr2.3:69541209-69541228 | MS.gene54317:intron | 30.0% |
| !!! | CGTTTATTTTTGTGTTGGTT+TGG | - | chr2.3:69541977-69541996 | MS.gene54317:intron | 30.0% |
| !!! | TAGGACGTTTATTTTTGTGT+TGG | - | chr2.3:69541972-69541991 | MS.gene54317:intron | 30.0% |
| AAGCAATGGAGAACGAAATT+TGG | + | chr2.3:69540360-69540379 | None:intergenic | 35.0% | |
| AAGTGTCAGTACTGCAAAAA+TGG | + | chr2.3:69542307-69542326 | None:intergenic | 35.0% | |
| ATGCTTTGCTTGCAATTGTT+TGG | - | chr2.3:69542523-69542542 | MS.gene54317:intron | 35.0% | |
| CTAACCAACATAAGGTTAGT+GGG | - | chr2.3:69540571-69540590 | MS.gene54317:intron | 35.0% | |
| GCGACTTAAAGTAAGGAATT+TGG | - | chr2.3:69542098-69542117 | MS.gene54317:intron | 35.0% | |
| GGTTTGATTGAACTTGACTA+TGG | - | chr2.3:69540807-69540826 | MS.gene54317:intron | 35.0% | |
| TCTAACCAACATAAGGTTAG+TGG | - | chr2.3:69540570-69540589 | MS.gene54317:intron | 35.0% | |
| TTGATTGAACTTGACTATGG+TGG | - | chr2.3:69540810-69540829 | MS.gene54317:intron | 35.0% | |
| TTGGACTTGAAACCTAATGT+TGG | - | chr2.3:69542646-69542665 | MS.gene54317:intron | 35.0% | |
| TTTGAAGAAGCAGTGAAAGT+GGG | + | chr2.3:69540311-69540330 | None:intergenic | 35.0% | |
| ! | AAATAACCTAAGGGTGTGTT+TGG | + | chr2.3:69541683-69541702 | None:intergenic | 35.0% |
| ! | GCTTTGTTGGAAATTGTATG+CGG | - | chr2.3:69542453-69542472 | MS.gene54317:intron | 35.0% |
| ! | TTTTCGTGATCTACTTCTCT+TGG | + | chr2.3:69542734-69542753 | None:intergenic | 35.0% |
| !! | AAATTATGATCGGTGTCAAC+GGG | - | chr2.3:69542395-69542414 | MS.gene54317:intron | 35.0% |
| !! | AAGGAAAAAGGTACCTGAAA+TGG | + | chr2.3:69540441-69540460 | None:intergenic | 35.0% |
| !! | CAAATTATGATCGGTGTCAA+CGG | - | chr2.3:69542394-69542413 | MS.gene54317:intron | 35.0% |
| !! | TGATATTGCTTTAGCTTTGG+TGG | - | chr2.3:69541919-69541938 | MS.gene54317:intron | 35.0% |
| !! | TTTTGAAGAAGCAGTGAAAG+TGG | + | chr2.3:69540312-69540331 | None:intergenic | 35.0% |
| !!! | ACATTCTTTTAGGGTGTGTT+TGG | - | chr2.3:69540981-69541000 | MS.gene54317:intron | 35.0% |
| !!! | ACGTTTATTTTTGTGTTGGC+TGG | - | chr2.3:69542024-69542043 | MS.gene54317:intron | 35.0% |
| AAACGAATGAGCACAACAAC+TGG | - | chr2.3:69542781-69542800 | MS.gene54317:CDS | 40.0% | |
| AAATGGGGTTGTGTTGTAAG+TGG | - | chr2.3:69540913-69540932 | MS.gene54317:intron | 40.0% | |
| AGAGGAAAGAGAAGAAGTGA+AGG | + | chr2.3:69540390-69540409 | None:intergenic | 40.0% | |
| CAAACCCACTAACCTTATGT+TGG | + | chr2.3:69540578-69540597 | None:intergenic | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | - | chr2.3:69541345-69541364 | MS.gene54317:intron | 40.0% | |
| CAATGGAGAACGAAATTTGG+AGG | + | chr2.3:69540357-69540376 | None:intergenic | 40.0% | |
| GAACTGAGAGAGATTGAAGA+TGG | + | chr2.3:69540335-69540354 | None:intergenic | 40.0% | |
| GTTGGACCTAGAAGACAAAA+TGG | - | chr2.3:69542664-69542683 | MS.gene54317:intron | 40.0% | |
| TACCTGAAATGGTAGAAGAG+TGG | + | chr2.3:69540430-69540449 | None:intergenic | 40.0% | |
| TAGAAGACAAAATGGTCGTC+TGG | - | chr2.3:69542672-69542691 | MS.gene54317:intron | 40.0% | |
| TCAAGTCGGTCCAAAACATA+AGG | - | chr2.3:69541344-69541363 | MS.gene54317:intron | 40.0% | |
| TCTCATCGCGACTTAAAGTA+AGG | - | chr2.3:69542091-69542110 | MS.gene54317:intron | 40.0% | |
| TGTCTTCTAGGTCCAACATT+AGG | + | chr2.3:69542661-69542680 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr2.3:69540995-69541014 | MS.gene54317:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr2.3:69541014-69540995 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr2.3:69540989-69541008 | MS.gene54317:intron | 40.0% | |
| TTCCACTCTTCTACCATTTC+AGG | - | chr2.3:69540425-69540444 | MS.gene54317:CDS | 40.0% | |
| TTGTTGTGCTCATTCGTTTG+CGG | + | chr2.3:69542780-69542799 | None:intergenic | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr2.3:69540999-69541018 | MS.gene54317:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr2.3:69541018-69540999 | None:intergenic | 40.0% | |
| ! | AAACTGATTTCTCCATGTCC+AGG | - | chr2.3:69542610-69542629 | MS.gene54317:intron | 40.0% |
| ! | AGACGACCATTTTGTCTTCT+AGG | + | chr2.3:69542673-69542692 | None:intergenic | 40.0% |
| ! | GAAGTATTTCCATCTGACAC+AGG | + | chr2.3:69542160-69542179 | None:intergenic | 40.0% |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | + | chr2.3:69541675-69541694 | None:intergenic | 40.0% |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | - | chr2.3:69540988-69541007 | MS.gene54317:intron | 40.0% |
| !! | TTTCCAACAAAGCACTGACA+CGG | + | chr2.3:69542446-69542465 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | + | chr2.3:69541302-69541283 | None:intergenic | 40.0% |
| AAATCATTGGCACGCACTCA+TGG | - | chr2.3:69542751-69542770 | MS.gene54317:CDS | 45.0% | |
| ACTTGACTATGGTGGCTGTT+TGG | - | chr2.3:69540818-69540837 | MS.gene54317:intron | 45.0% | |
| CTCAATCCAAACACACCCTT+AGG | - | chr2.3:69541674-69541693 | MS.gene54317:intron | 45.0% | |
| GAAAGAGAGAGAAGAAGGAG+AGG | + | chr2.3:69540408-69540427 | None:intergenic | 45.0% | |
| GAGTGGAAAGAGAGAGAAGA+AGG | + | chr2.3:69540413-69540432 | None:intergenic | 45.0% | |
| GTGAAGGAGCAATGAAGCAA+TGG | + | chr2.3:69540374-69540393 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr2.3:69540998-69541017 | MS.gene54317:intron | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr2.3:69541017-69540998 | None:intergenic | 45.0% | |
| TCGTCGCTCTACTTTCTCTA+AGG | - | chr2.3:69541872-69541891 | MS.gene54317:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr2.3:69541000-69541019 | MS.gene54317:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr2.3:69541019-69541000 | None:intergenic | 45.0% | |
| ! | AGTGGGTGCTCTGAATTTCA+TGG | + | chr2.3:69540294-69540313 | None:intergenic | 45.0% |
| ! | ATGGTGGCTGTTTGGAATGA+AGG | - | chr2.3:69540826-69540845 | MS.gene54317:intron | 45.0% |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | + | chr2.3:69541676-69541695 | None:intergenic | 45.0% |
| ! | TGCTGTTTACCTGTGTCAGA+TGG | - | chr2.3:69542148-69542167 | MS.gene54317:intron | 45.0% |
| !!! | ATAAAACATTTTTTTTTTTT+TGG | + | chr2.3:69540782-69540801 | None:intergenic | 5.0% |
| ACCAAGAGCCACGCAAATAG+TGG | - | chr2.3:69542853-69542872 | MS.gene54317:CDS | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+GGG | - | chr2.3:69541004-69541023 | MS.gene54317:intron | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+GGG | + | chr2.3:69541023-69541004 | None:intergenic | 50.0% | |
| CCATGTCCAGGTTTGTCACT+GGG | - | chr2.3:69542622-69542641 | MS.gene54317:intron | 50.0% | |
| CGATGAGAGCAAGATGAGCA+TGG | + | chr2.3:69542079-69542098 | None:intergenic | 50.0% | |
| CGTCTGGTTATAGTAGCAGC+AGG | - | chr2.3:69542688-69542707 | MS.gene54317:CDS | 50.0% | |
| TCCAATCCCAGTGACAAACC+TGG | + | chr2.3:69542631-69542650 | None:intergenic | 50.0% | |
| TCCAGGTTTGTCACTGGGAT+TGG | - | chr2.3:69542627-69542646 | MS.gene54317:intron | 50.0% | |
| TCCATGTCCAGGTTTGTCAC+TGG | - | chr2.3:69542621-69542640 | MS.gene54317:intron | 50.0% | |
| TGTCCGTGTCAGTGCTTTGT+TGG | - | chr2.3:69542440-69542459 | MS.gene54317:intron | 50.0% | |
| ! | GCAAAGGACTTTTCGTCCCT+TGG | + | chr2.3:69542833-69542852 | None:intergenic | 50.0% |
| ATTAAAGCGACGACGCGCCA+AGG | - | chr2.3:69542813-69542832 | MS.gene54317:CDS | 55.0% | |
| CAACGGGTCAGTGTCGTGTA+TGG | - | chr2.3:69542411-69542430 | MS.gene54317:intron | 55.0% | |
| CCCAGTGACAAACCTGGACA+TGG | + | chr2.3:69542625-69542644 | None:intergenic | 55.0% | |
| GATTGAGGGTTTAGGAGGGG+AGG | - | chr2.3:69541003-69541022 | MS.gene54317:intron | 55.0% | |
| GATTGAGGGTTTAGGAGGGG+AGG | + | chr2.3:69541022-69541003 | None:intergenic | 55.0% | |
| GCCACTATTTGCGTGGCTCT+TGG | + | chr2.3:69542857-69542876 | None:intergenic | 55.0% | |
| TTAAAGCGACGACGCGCCAA+GGG | - | chr2.3:69542814-69542833 | MS.gene54317:CDS | 55.0% | |
| TTGAGGGTTTAGGAGGGGAG+GGG | - | chr2.3:69541005-69541024 | MS.gene54317:intron | 55.0% | |
| ! | TTGCGTGGCTCTTGGTGCAA+AGG | + | chr2.3:69542849-69542868 | None:intergenic | 55.0% |
| AGGGTTTAGGAGGGGAGGGG+AGG | - | chr2.3:69541008-69541027 | MS.gene54317:intron | 65.0% | |
| GGGTTTAGGAGGGGAGGGGA+GGG | - | chr2.3:69541009-69541028 | MS.gene54317:intron | 65.0% | |
| GGTTTAGGAGGGGAGGGGAG+GGG | - | chr2.3:69541010-69541029 | MS.gene54317:intron | 65.0% | |
| AGGAGGGGAGGGGAGGGGAA+GGG | - | chr2.3:69541015-69541034 | MS.gene54317:intron | 70.0% | |
| TAGGAGGGGAGGGGAGGGGA+AGG | - | chr2.3:69541014-69541033 | MS.gene54317:intron | 70.0% | |
| AGGGGAGGGGAAGGGAGGGG+AGG | - | chr2.3:69541023-69541042 | MS.gene54317:intron | 75.0% | |
| AGGGGAGGGGAGGGGAAGGG+AGG | - | chr2.3:69541018-69541037 | MS.gene54317:intron | 75.0% | |
| GGGAGGGGAGGGGAAGGGAG+GGG | - | chr2.3:69541020-69541039 | MS.gene54317:intron | 75.0% | |
| GGGGAGGGGAGGGGAAGGGA+GGG | - | chr2.3:69541019-69541038 | MS.gene54317:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 69540251 | 69542882 | 69540251 | ID=MS.gene54317 |
| chr2.3 | mRNA | 69540251 | 69542882 | 69540251 | ID=MS.gene54317.t1;Parent=MS.gene54317 |
| chr2.3 | exon | 69542687 | 69542882 | 69542687 | ID=MS.gene54317.t1.exon1;Parent=MS.gene54317.t1 |
| chr2.3 | CDS | 69542687 | 69542882 | 69542687 | ID=cds.MS.gene54317.t1;Parent=MS.gene54317.t1 |
| chr2.3 | exon | 69540251 | 69540501 | 69540251 | ID=MS.gene54317.t1.exon2;Parent=MS.gene54317.t1 |
| chr2.3 | CDS | 69540251 | 69540501 | 69540251 | ID=cds.MS.gene54317.t1;Parent=MS.gene54317.t1 |
| Gene Sequence |
| Protein sequence |
