Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83126.t1 | XP_013466516.1 | 93.1 | 160 | 10 | 1 | 1 | 159 | 77 | 236 | 7.50E-55 | 223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83126.t1 | A0A072VFH3 | 93.1 | 160 | 10 | 1 | 1 | 159 | 77 | 236 | 5.4e-55 | 223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene83126 | 0.839196 | 1.83E-57 | -1.69E-46 |
| MS.gene049173 | MS.gene83126 | 0.854395 | 1.27E-61 | -1.69E-46 |
| MS.gene049217 | MS.gene83126 | 0.845048 | 5.18E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene83126 | 0.844516 | 7.20E-59 | -1.69E-46 |
| MS.gene049281 | MS.gene83126 | -0.811021 | 8.62E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene83126 | 0.886715 | 2.69E-72 | -1.69E-46 |
| MS.gene049320 | MS.gene83126 | 0.878602 | 2.46E-69 | -1.69E-46 |
| MS.gene049627 | MS.gene83126 | 0.866203 | 3.39E-65 | -1.69E-46 |
| MS.gene05010 | MS.gene83126 | 0.800663 | 1.30E-48 | -1.69E-46 |
| MS.gene050163 | MS.gene83126 | 0.909163 | 7.72E-82 | -1.69E-46 |
| MS.gene050165 | MS.gene83126 | 0.904227 | 1.53E-79 | -1.69E-46 |
| MS.gene050173 | MS.gene83126 | -0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene83126 | 0.901068 | 3.89E-78 | -1.69E-46 |
| MS.gene050353 | MS.gene83126 | -0.808337 | 3.25E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene83126 | -0.803849 | 2.86E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene83126 | 0.806782 | 6.96E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene83126 | 0.87251 | 3.01E-67 | -1.69E-46 |
| MS.gene050518 | MS.gene83126 | 0.834391 | 3.08E-56 | -1.69E-46 |
| MS.gene050577 | MS.gene83126 | 0.815865 | 7.43E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene83126 | 0.869579 | 2.78E-66 | -1.69E-46 |
| MS.gene050675 | MS.gene83126 | 0.835373 | 1.74E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene83126 | 0.837456 | 5.14E-57 | -1.69E-46 |
| MS.gene050767 | MS.gene83126 | 0.817455 | 3.27E-52 | -1.69E-46 |
| MS.gene050770 | MS.gene83126 | 0.819947 | 8.89E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene83126 | 0.838885 | 2.20E-57 | -1.69E-46 |
| MS.gene050832 | MS.gene83126 | -0.818242 | 2.17E-52 | -1.69E-46 |
| MS.gene050833 | MS.gene83126 | -0.820211 | 7.73E-53 | -1.69E-46 |
| MS.gene050876 | MS.gene83126 | 0.820781 | 5.72E-53 | -1.69E-46 |
| MS.gene05087 | MS.gene83126 | 0.814655 | 1.38E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene83126 | 0.832874 | 7.37E-56 | -1.69E-46 |
| MS.gene05100 | MS.gene83126 | 0.88967 | 1.97E-73 | -1.69E-46 |
| MS.gene051127 | MS.gene83126 | -0.808324 | 3.28E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene83126 | 0.820717 | 5.92E-53 | -1.69E-46 |
| MS.gene051434 | MS.gene83126 | 0.812129 | 4.95E-51 | -1.69E-46 |
| MS.gene051564 | MS.gene83126 | 0.840689 | 7.48E-58 | -1.69E-46 |
| MS.gene051566 | MS.gene83126 | 0.841119 | 5.77E-58 | -1.69E-46 |
| MS.gene051694 | MS.gene83126 | 0.843801 | 1.12E-58 | -1.69E-46 |
| MS.gene051810 | MS.gene83126 | 0.864981 | 8.22E-65 | -1.69E-46 |
| MS.gene051858 | MS.gene83126 | 0.834306 | 3.24E-56 | -1.69E-46 |
| MS.gene051949 | MS.gene83126 | 0.881295 | 2.70E-70 | -1.69E-46 |
| MS.gene052164 | MS.gene83126 | 0.820146 | 8.00E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene83126 | 0.847648 | 1.01E-59 | -1.69E-46 |
| MS.gene052379 | MS.gene83126 | 0.826318 | 2.90E-54 | -1.69E-46 |
| MS.gene052482 | MS.gene83126 | 0.804213 | 2.41E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene83126 | 0.811393 | 7.16E-51 | -1.69E-46 |
| MS.gene052670 | MS.gene83126 | 0.820086 | 8.26E-53 | -1.69E-46 |
| MS.gene052916 | MS.gene83126 | 0.86755 | 1.26E-65 | -1.69E-46 |
| MS.gene053213 | MS.gene83126 | 0.855414 | 6.41E-62 | -1.69E-46 |
| MS.gene053286 | MS.gene83126 | 0.855404 | 6.46E-62 | -1.69E-46 |
| MS.gene053322 | MS.gene83126 | 0.81983 | 9.45E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene83126 | -0.801215 | 1.00E-48 | -1.69E-46 |
| MS.gene053561 | MS.gene83126 | -0.815013 | 1.15E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene83126 | 0.8027 | 4.95E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene83126 | 0.818622 | 1.78E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene83126 | 0.840133 | 1.04E-57 | -1.69E-46 |
| MS.gene054616 | MS.gene83126 | -0.827699 | 1.35E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene83126 | 0.889204 | 2.99E-73 | -1.69E-46 |
| MS.gene054708 | MS.gene83126 | -0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene83126 | 0.8062 | 9.23E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene83126 | 0.864583 | 1.10E-64 | -1.69E-46 |
| MS.gene054959 | MS.gene83126 | -0.809361 | 1.97E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene83126 | -0.824924 | 6.20E-54 | -1.69E-46 |
| MS.gene055212 | MS.gene83126 | 0.823205 | 1.57E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene83126 | 0.886633 | 2.89E-72 | -1.69E-46 |
| MS.gene055397 | MS.gene83126 | 0.815665 | 8.23E-52 | -1.69E-46 |
| MS.gene055499 | MS.gene83126 | 0.848201 | 7.13E-60 | -1.69E-46 |
| MS.gene055502 | MS.gene83126 | 0.853747 | 1.95E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene83126 | 0.829217 | 5.82E-55 | -1.69E-46 |
| MS.gene055634 | MS.gene83126 | 0.821204 | 4.57E-53 | -1.69E-46 |
| MS.gene055636 | MS.gene83126 | 0.806586 | 7.65E-50 | -1.69E-46 |
| MS.gene055638 | MS.gene83126 | 0.834119 | 3.60E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene83126 | 0.843693 | 1.20E-58 | -1.69E-46 |
| MS.gene055748 | MS.gene83126 | 0.822995 | 1.76E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene83126 | 0.810609 | 1.06E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene83126 | 0.831743 | 1.40E-55 | -1.69E-46 |
| MS.gene055776 | MS.gene83126 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene055956 | MS.gene83126 | -0.803847 | 2.87E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene83126 | 0.841885 | 3.62E-58 | -1.69E-46 |
| MS.gene056374 | MS.gene83126 | 0.851572 | 8.13E-61 | -1.69E-46 |
| MS.gene056409 | MS.gene83126 | 0.808045 | 3.76E-50 | -1.69E-46 |
| MS.gene056449 | MS.gene83126 | 0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene83126 | 0.82907 | 6.32E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene83126 | 0.820267 | 7.51E-53 | -1.69E-46 |
| MS.gene056549 | MS.gene83126 | 0.833958 | 3.95E-56 | -1.69E-46 |
| MS.gene056610 | MS.gene83126 | 0.805889 | 1.07E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene83126 | 0.879782 | 9.40E-70 | -1.69E-46 |
| MS.gene056692 | MS.gene83126 | 0.86318 | 2.99E-64 | -1.69E-46 |
| MS.gene057129 | MS.gene83126 | 0.837017 | 6.66E-57 | -1.69E-46 |
| MS.gene057246 | MS.gene83126 | 0.800568 | 1.36E-48 | -1.69E-46 |
| MS.gene057416 | MS.gene83126 | 0.808478 | 3.04E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene83126 | 0.823884 | 1.09E-53 | -1.69E-46 |
| MS.gene057986 | MS.gene83126 | 0.805541 | 1.27E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene83126 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene83126 | 0.869928 | 2.14E-66 | -1.69E-46 |
| MS.gene058544 | MS.gene83126 | 0.821377 | 4.17E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene83126 | 0.833691 | 4.61E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene83126 | 0.866601 | 2.53E-65 | -1.69E-46 |
| MS.gene059022 | MS.gene83126 | 0.88896 | 3.71E-73 | -1.69E-46 |
| MS.gene059023 | MS.gene83126 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene83126 | 0.841094 | 5.85E-58 | -1.69E-46 |
| MS.gene05912 | MS.gene83126 | 0.800384 | 1.48E-48 | -1.69E-46 |
| MS.gene05913 | MS.gene83126 | 0.818693 | 1.72E-52 | -1.69E-46 |
| MS.gene059479 | MS.gene83126 | -0.82026 | 7.53E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene83126 | 0.822907 | 1.84E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene83126 | 0.882704 | 8.33E-71 | -1.69E-46 |
| MS.gene059718 | MS.gene83126 | 0.860926 | 1.47E-63 | -1.69E-46 |
| MS.gene059756 | MS.gene83126 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene059801 | MS.gene83126 | 0.827286 | 1.70E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene83126 | 0.833183 | 6.17E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene83126 | 0.835579 | 1.55E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene83126 | 0.827063 | 1.92E-54 | -1.69E-46 |
| MS.gene060703 | MS.gene83126 | 0.864914 | 8.63E-65 | -1.69E-46 |
| MS.gene060762 | MS.gene83126 | 0.852538 | 4.32E-61 | -1.69E-46 |
| MS.gene06077 | MS.gene83126 | 0.852031 | 6.02E-61 | -1.69E-46 |
| MS.gene060982 | MS.gene83126 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene83126 | 0.882566 | 9.36E-71 | -1.69E-46 |
| MS.gene061171 | MS.gene83126 | 0.817617 | 3.01E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene83126 | 0.846888 | 1.64E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83126.t1 | MTR_1g030860 | 86.875 | 160 | 20 | 1 | 1 | 159 | 77 | 236 | 2.09e-81 | 240 |
| MS.gene83126.t1 | MTR_8g077030 | 35.897 | 156 | 93 | 2 | 7 | 159 | 374 | 525 | 1.03e-14 | 70.9 |
| MS.gene83126.t1 | MTR_6g012760 | 34.615 | 156 | 93 | 3 | 7 | 159 | 106 | 255 | 6.83e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83126.t1 | AT2G43630 | 34.356 | 163 | 93 | 2 | 7 | 159 | 104 | 262 | 1.00e-24 | 96.7 |
Find 42 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCAATGGACAAATTTA+AGG | 0.142467 | 1.2:-16254558 | None:intergenic |
| TAAGCGTATCATGGTAAAAT+TGG | 0.154842 | 1.2:-16253672 | MS.gene83126:CDS |
| ATCTGGTGCCTTACTCTTTC+TGG | 0.178984 | 1.2:-16254354 | MS.gene83126:intron |
| CCAGGAGGAGGAGGAGAAGG+TGG | 0.330061 | 1.2:-16254455 | MS.gene83126:CDS |
| CCATGTTGGGGTATTCAAAA+TGG | 0.340619 | 1.2:+16253589 | None:intergenic |
| CAGGATCATACCACCATGTT+GGG | 0.367552 | 1.2:+16253576 | None:intergenic |
| CACCAGATGCGAAAATTGTT+TGG | 0.372513 | 1.2:+16254369 | None:intergenic |
| AATGCAATGGACAAATTTAA+GGG | 0.386519 | 1.2:-16254557 | None:intergenic |
| CCACCTTCTCCTCCTCCTCC+TGG | 0.389125 | 1.2:+16254455 | None:intergenic |
| TTACGGAAGCAAATTCAAAA+AGG | 0.403502 | 1.2:-16254515 | MS.gene83126:CDS |
| TTAAGGTTTATAGTTGGCTT+AGG | 0.406725 | 1.2:-16253710 | MS.gene83126:CDS |
| AGGAGGAGGAGGAGAAGGTG+GGG | 0.423587 | 1.2:-16254453 | MS.gene83126:CDS |
| GGTGGTGGTGGCAGTCCCAA+TGG | 0.428342 | 1.2:-16254431 | MS.gene83126:CDS |
| GGTGGCAGTCCCAATGGCCC+TGG | 0.434107 | 1.2:-16254425 | MS.gene83126:CDS |
| AAGCGTATCATGGTAAAATT+GGG | 0.456666 | 1.2:-16253671 | MS.gene83126:CDS |
| GGAGGAGGAGGAGAAGGTGG+GGG | 0.460530 | 1.2:-16254452 | MS.gene83126:CDS |
| TATTTAGACAATGGTGGAAG+TGG | 0.463016 | 1.2:-16254488 | MS.gene83126:CDS |
| CCACCAGGAGGAGGAGGAGA+AGG | 0.467905 | 1.2:-16254458 | MS.gene83126:CDS |
| AATCAATAGAAGAAGTATTA+CGG | 0.472780 | 1.2:-16254532 | MS.gene83126:CDS |
| TCAGATCCACCAGGGCCATT+GGG | 0.486936 | 1.2:+16254416 | None:intergenic |
| ATCAGATCCACCAGGGCCAT+TGG | 0.489944 | 1.2:+16254415 | None:intergenic |
| AGAGTGTACCAGAAAGAGTA+AGG | 0.496063 | 1.2:+16254346 | None:intergenic |
| GTAAAGCCACCAGGAGGAGG+AGG | 0.507231 | 1.2:-16254464 | MS.gene83126:CDS |
| CAGGAGGAGGAGGAGAAGGT+GGG | 0.514543 | 1.2:-16254454 | MS.gene83126:CDS |
| GGAGTAAAGCCACCAGGAGG+AGG | 0.524624 | 1.2:-16254467 | MS.gene83126:CDS |
| TCAGGATCATACCACCATGT+TGG | 0.534231 | 1.2:+16253575 | None:intergenic |
| GGCAGTCCCAATGGCCCTGG+TGG | 0.545700 | 1.2:-16254422 | MS.gene83126:CDS |
| TAGTCGAATTAAGCGTATCA+TGG | 0.558198 | 1.2:-16253681 | MS.gene83126:CDS |
| TAAAATTGGGAAAATTGTAC+CGG | 0.563003 | 1.2:-16253658 | MS.gene83126:CDS |
| GGTGAGTATTTAGACAATGG+TGG | 0.570123 | 1.2:-16254494 | MS.gene83126:CDS |
| ACTGCTGTACGAAAATCCTC+AGG | 0.570351 | 1.2:+16253557 | None:intergenic |
| CCTTCTCCTCCTCCTCCTGG+TGG | 0.583094 | 1.2:+16254458 | None:intergenic |
| TCTTCATCATCAGATCCACC+AGG | 0.590752 | 1.2:+16254407 | None:intergenic |
| AAAGGTGAGTATTTAGACAA+TGG | 0.597947 | 1.2:-16254497 | MS.gene83126:CDS |
| TATCTATCTCATCATGAGCA+AGG | 0.607713 | 1.2:-16253759 | MS.gene83126:CDS |
| AACATGGTGGTATGATCCTG+AGG | 0.623546 | 1.2:-16253573 | MS.gene83126:CDS |
| GGAAGTGGAGTAAAGCCACC+AGG | 0.635749 | 1.2:-16254473 | MS.gene83126:CDS |
| AGGATCATACCACCATGTTG+GGG | 0.658146 | 1.2:+16253577 | None:intergenic |
| TGTACCGGAGTACGAAACAG+AGG | 0.680091 | 1.2:-16253643 | MS.gene83126:CDS |
| GAATTACTATGCATCAGATG+CGG | 0.684768 | 1.2:-16253531 | MS.gene83126:CDS |
| CTTCATCATCAGATCCACCA+GGG | 0.689052 | 1.2:+16254408 | None:intergenic |
| AGTGGAGTAAAGCCACCAGG+AGG | 0.725114 | 1.2:-16254470 | MS.gene83126:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTTTGATGTCAAATT+TGG | - | chr1.2:16254123-16254142 | MS.gene83126:intron | 15.0% |
| !!! | AATCAATAGAAGAAGTATTA+CGG | - | chr1.2:16253542-16253561 | MS.gene83126:CDS | 20.0% |
| !!! | TAGTTAATGTTTCTGATTAA+TGG | - | chr1.2:16253889-16253908 | MS.gene83126:intron | 20.0% |
| !!! | TCTAAATTTTGAAAACTCAA+AGG | - | chr1.2:16253828-16253847 | MS.gene83126:intron | 20.0% |
| ! | ATAATTTCTCTTCAGAAATG+AGG | + | chr1.2:16254093-16254112 | None:intergenic | 25.0% |
| ! | TAAAATTGGGAAAATTGTAC+CGG | - | chr1.2:16254416-16254435 | MS.gene83126:CDS | 25.0% |
| !!! | GACTTTTTAAGGTTTATAGT+TGG | - | chr1.2:16254358-16254377 | MS.gene83126:CDS | 25.0% |
| !!! | GCACAATTTTTGACTTTTTA+AGG | - | chr1.2:16254347-16254366 | MS.gene83126:intron | 25.0% |
| !!! | TAACAGAGTTGATAGAATAT+AGG | - | chr1.2:16254062-16254081 | MS.gene83126:intron | 25.0% |
| AAAGGTGAGTATTTAGACAA+TGG | - | chr1.2:16253577-16253596 | MS.gene83126:CDS | 30.0% | |
| AACTCTGTTAATCATGTCAA+GGG | + | chr1.2:16254052-16254071 | None:intergenic | 30.0% | |
| AAGCGTATCATGGTAAAATT+GGG | - | chr1.2:16254403-16254422 | MS.gene83126:CDS | 30.0% | |
| ACTCAAAGGAGAAAGTTAAA+TGG | - | chr1.2:16253842-16253861 | MS.gene83126:intron | 30.0% | |
| GTTTGAGCATTAAGAAATAG+TGG | + | chr1.2:16254275-16254294 | None:intergenic | 30.0% | |
| TAAGCGTATCATGGTAAAAT+TGG | - | chr1.2:16254402-16254421 | MS.gene83126:CDS | 30.0% | |
| TCAAAAGTCTTCTCATATAC+CGG | + | chr1.2:16253989-16254008 | None:intergenic | 30.0% | |
| TCATGATGAGATAGATATAC+TGG | + | chr1.2:16254312-16254331 | None:intergenic | 30.0% | |
| TTACGGAAGCAAATTCAAAA+AGG | - | chr1.2:16253559-16253578 | MS.gene83126:CDS | 30.0% | |
| ! | TTAAGGTTTATAGTTGGCTT+AGG | - | chr1.2:16254364-16254383 | MS.gene83126:CDS | 30.0% |
| CAACTCTGTTAATCATGTCA+AGG | + | chr1.2:16254053-16254072 | None:intergenic | 35.0% | |
| CGGTATATGTGTAGTATATG+TGG | - | chr1.2:16253760-16253779 | MS.gene83126:CDS | 35.0% | |
| GAATTACTATGCATCAGATG+CGG | - | chr1.2:16254543-16254562 | MS.gene83126:CDS | 35.0% | |
| GGACAAGTAAATTACTCATC+TGG | - | chr1.2:16253781-16253800 | MS.gene83126:intron | 35.0% | |
| TAGTCGAATTAAGCGTATCA+TGG | - | chr1.2:16254393-16254412 | MS.gene83126:CDS | 35.0% | |
| TATCTATCTCATCATGAGCA+AGG | - | chr1.2:16254315-16254334 | MS.gene83126:intron | 35.0% | |
| TTCTCTTCAGAAATGAGGAA+TGG | + | chr1.2:16254088-16254107 | None:intergenic | 35.0% | |
| ! | AATCACTGATGAGCACTTTT+TGG | - | chr1.2:16254456-16254475 | MS.gene83126:CDS | 35.0% |
| ! | TATGAGAAGACTTTTGAGCA+TGG | - | chr1.2:16253992-16254011 | MS.gene83126:intron | 35.0% |
| ! | TATTTAGACAATGGTGGAAG+TGG | - | chr1.2:16253586-16253605 | MS.gene83126:CDS | 35.0% |
| !! | AACTATAGCCCTTTTTAGCA+TGG | + | chr1.2:16253874-16253893 | None:intergenic | 35.0% |
| AAGTCTTCTCATATACCGGA+AGG | + | chr1.2:16253985-16254004 | None:intergenic | 40.0% | |
| AGAGTGTACCAGAAAGAGTA+AGG | + | chr1.2:16253731-16253750 | None:intergenic | 40.0% | |
| CACCAGATGCGAAAATTGTT+TGG | + | chr1.2:16253708-16253727 | None:intergenic | 40.0% | |
| GCTAACTATTGAAGTCCTTC+CGG | - | chr1.2:16253967-16253986 | MS.gene83126:intron | 40.0% | |
| GGAAGTAGCCATGCTAAAAA+GGG | - | chr1.2:16253863-16253882 | MS.gene83126:intron | 40.0% | |
| GGTGAGTATTTAGACAATGG+TGG | - | chr1.2:16253580-16253599 | MS.gene83126:CDS | 40.0% | |
| TGGAAGTAGCCATGCTAAAA+AGG | - | chr1.2:16253862-16253881 | MS.gene83126:intron | 40.0% | |
| TGGTACACTCTCTTTCTCTT+CGG | - | chr1.2:16253740-16253759 | MS.gene83126:CDS | 40.0% | |
| ! | CCATGTTGGGGTATTCAAAA+TGG | + | chr1.2:16254488-16254507 | None:intergenic | 40.0% |
| ! | CCATTTTGAATACCCCAACA+TGG | - | chr1.2:16254485-16254504 | MS.gene83126:CDS | 40.0% |
| ! | TTTTCCTCTGTTTCGTACTC+CGG | + | chr1.2:16254438-16254457 | None:intergenic | 40.0% |
| ! | TTTTGAATACCCCAACATGG+TGG | - | chr1.2:16254488-16254507 | MS.gene83126:CDS | 40.0% |
| !! | TGATGAGCACTTTTTGGAGA+AGG | - | chr1.2:16254462-16254481 | MS.gene83126:CDS | 40.0% |
| AACATGGTGGTATGATCCTG+AGG | - | chr1.2:16254501-16254520 | MS.gene83126:CDS | 45.0% | |
| ACTGCTGTACGAAAATCCTC+AGG | + | chr1.2:16254520-16254539 | None:intergenic | 45.0% | |
| AGGATCATACCACCATGTTG+GGG | + | chr1.2:16254500-16254519 | None:intergenic | 45.0% | |
| ATCTGGTGCCTTACTCTTTC+TGG | - | chr1.2:16253720-16253739 | MS.gene83126:CDS | 45.0% | |
| CAGGATCATACCACCATGTT+GGG | + | chr1.2:16254501-16254520 | None:intergenic | 45.0% | |
| CTTCATCATCAGATCCACCA+GGG | + | chr1.2:16253669-16253688 | None:intergenic | 45.0% | |
| TCAGGATCATACCACCATGT+TGG | + | chr1.2:16254502-16254521 | None:intergenic | 45.0% | |
| TCTTCATCATCAGATCCACC+AGG | + | chr1.2:16253670-16253689 | None:intergenic | 45.0% | |
| ! | CGCCAAACAATTTTCGCATC+TGG | - | chr1.2:16253703-16253722 | MS.gene83126:CDS | 45.0% |
| TGTACCGGAGTACGAAACAG+AGG | - | chr1.2:16254431-16254450 | MS.gene83126:CDS | 50.0% | |
| AGTGGAGTAAAGCCACCAGG+AGG | - | chr1.2:16253604-16253623 | MS.gene83126:CDS | 55.0% | |
| ATCAGATCCACCAGGGCCAT+TGG | + | chr1.2:16253662-16253681 | None:intergenic | 55.0% | |
| GGAAGTGGAGTAAAGCCACC+AGG | - | chr1.2:16253601-16253620 | MS.gene83126:CDS | 55.0% | |
| TCAGATCCACCAGGGCCATT+GGG | + | chr1.2:16253661-16253680 | None:intergenic | 55.0% | |
| AGGAGGAGGAGGAGAAGGTG+GGG | - | chr1.2:16253621-16253640 | MS.gene83126:CDS | 60.0% | |
| CAGGAGGAGGAGGAGAAGGT+GGG | - | chr1.2:16253620-16253639 | MS.gene83126:CDS | 60.0% | |
| GGAGTAAAGCCACCAGGAGG+AGG | - | chr1.2:16253607-16253626 | MS.gene83126:CDS | 60.0% | |
| GTAAAGCCACCAGGAGGAGG+AGG | - | chr1.2:16253610-16253629 | MS.gene83126:CDS | 60.0% | |
| CCACCAGGAGGAGGAGGAGA+AGG | - | chr1.2:16253616-16253635 | MS.gene83126:CDS | 65.0% | |
| CCACCTTCTCCTCCTCCTCC+TGG | + | chr1.2:16253622-16253641 | None:intergenic | 65.0% | |
| CCAGGAGGAGGAGGAGAAGG+TGG | - | chr1.2:16253619-16253638 | MS.gene83126:CDS | 65.0% | |
| CCTTCTCCTCCTCCTCCTGG+TGG | + | chr1.2:16253619-16253638 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGAAGGTGG+GGG | - | chr1.2:16253622-16253641 | MS.gene83126:CDS | 65.0% | |
| !! | GGTGGTGGTGGCAGTCCCAA+TGG | - | chr1.2:16253643-16253662 | MS.gene83126:CDS | 65.0% |
| GGAGGAGAAGGTGGGGGTGG+TGG | - | chr1.2:16253628-16253647 | MS.gene83126:CDS | 70.0% | |
| GGAGGAGGAGAAGGTGGGGG+TGG | - | chr1.2:16253625-16253644 | MS.gene83126:CDS | 70.0% | |
| GGCAGTCCCAATGGCCCTGG+TGG | - | chr1.2:16253652-16253671 | MS.gene83126:CDS | 70.0% | |
| GGTGGCAGTCCCAATGGCCC+TGG | - | chr1.2:16253649-16253668 | MS.gene83126:CDS | 70.0% | |
| ! | GGAGAAGGTGGGGGTGGTGG+TGG | - | chr1.2:16253631-16253650 | MS.gene83126:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 16253523 | 16254573 | 16253523 | ID=MS.gene83126 |
| chr1.2 | mRNA | 16253523 | 16254573 | 16253523 | ID=MS.gene83126.t1;Parent=MS.gene83126 |
| chr1.2 | exon | 16254355 | 16254573 | 16254355 | ID=MS.gene83126.t1.exon1;Parent=MS.gene83126.t1 |
| chr1.2 | CDS | 16254355 | 16254573 | 16254355 | ID=cds.MS.gene83126.t1;Parent=MS.gene83126.t1 |
| chr1.2 | exon | 16253523 | 16253783 | 16253523 | ID=MS.gene83126.t1.exon2;Parent=MS.gene83126.t1 |
| chr1.2 | CDS | 16253523 | 16253783 | 16253523 | ID=cds.MS.gene83126.t1;Parent=MS.gene83126.t1 |
| Gene Sequence |
| Protein sequence |
