Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005234.01.T01 | XP_003591958.1 | 89.205 | 176 | 10 | 1 | 1 | 167 | 1 | 176 | 1.15E-104 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005234.01.T01 | G7I9L2 | 89.205 | 176 | 10 | 1 | 1 | 167 | 1 | 176 | 5.52e-105 | 316 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048383.01 | MsG0180005234.01 | 0.805068 | 1.595966e-49 | 8.363635e-47 |
| MsG0180000144.01 | MsG0180005234.01 | 0.801819 | 7.521763e-49 | 3.626936e-46 |
| MsG0180000494.01 | MsG0180005234.01 | 0.805462 | 1.319654e-49 | 6.986131e-47 |
| MsG0180000555.01 | MsG0180005234.01 | 0.849295 | 3.545045e-60 | 6.689703e-57 |
| MsG0180000680.01 | MsG0180005234.01 | 0.801722 | 7.872489e-49 | 3.786586e-46 |
| MsG0180000741.01 | MsG0180005234.01 | 0.836934 | 6.992750e-57 | 8.944947e-54 |
| MsG0180000797.01 | MsG0180005234.01 | 0.821621 | 3.663860e-53 | 2.995927e-50 |
| MsG0180000836.01 | MsG0180005234.01 | 0.809060 | 2.280291e-50 | 1.325359e-47 |
| MsG0180001173.01 | MsG0180005234.01 | 0.824417 | 8.165702e-54 | 7.227810e-51 |
| MsG0180001566.01 | MsG0180005234.01 | 0.820495 | 6.656803e-53 | 5.275396e-50 |
| MsG0180001570.01 | MsG0180005234.01 | 0.800882 | 1.169734e-48 | 5.508589e-46 |
| MsG0180001599.01 | MsG0180005234.01 | 0.812168 | 4.854901e-51 | 3.064470e-48 |
| MsG0180001911.01 | MsG0180005234.01 | 0.801227 | 9.943526e-49 | 4.723514e-46 |
| MsG0180001922.01 | MsG0180005234.01 | 0.806168 | 9.375722e-50 | 5.054157e-47 |
| MsG0180003190.01 | MsG0180005234.01 | 0.823961 | 1.044847e-53 | 9.130962e-51 |
| MsG0180003303.01 | MsG0180005234.01 | 0.851474 | 8.672018e-61 | 1.757085e-57 |
| MsG0180003444.01 | MsG0180005234.01 | 0.801190 | 1.012211e-48 | 4.803792e-46 |
| MsG0180003627.01 | MsG0180005234.01 | 0.811768 | 5.935291e-51 | 3.706064e-48 |
| MsG0180003744.01 | MsG0180005234.01 | 0.826889 | 2.117453e-54 | 2.011668e-51 |
| MsG0180003807.01 | MsG0180005234.01 | 0.833807 | 4.313172e-56 | 5.022624e-53 |
| MsG0180003977.01 | MsG0180005234.01 | 0.806040 | 9.977967e-50 | 5.361069e-47 |
| MsG0180003984.01 | MsG0180005234.01 | 0.802827 | 4.663702e-49 | 2.307469e-46 |
| MsG0180004016.01 | MsG0180005234.01 | 0.834150 | 3.540338e-56 | 4.164681e-53 |
| MsG0180004372.01 | MsG0180005234.01 | 0.803264 | 3.787606e-49 | 1.894844e-46 |
| MsG0180004437.01 | MsG0180005234.01 | 0.851645 | 7.755923e-61 | 1.580230e-57 |
| MsG0180004598.01 | MsG0180005234.01 | 0.863681 | 2.092050e-64 | 6.396774e-61 |
| MsG0180004767.01 | MsG0180005234.01 | 0.841020 | 6.120205e-58 | 8.875842e-55 |
| MsG0180005234.01 | MsG0180005304.01 | 0.814053 | 1.874309e-51 | 1.244538e-48 |
| MsG0180005234.01 | MsG0180005443.01 | 0.817391 | 3.378247e-52 | 2.457159e-49 |
| MsG0180005234.01 | MsG0180005451.01 | 0.826117 | 3.234743e-54 | 3.005968e-51 |
| MsG0180005234.01 | MsG0180005765.01 | 0.805938 | 1.048331e-49 | 5.618005e-47 |
| MsG0180005234.01 | MsG0180005786.01 | 0.809597 | 1.749495e-50 | 1.031561e-47 |
| MsG0180005234.01 | MsG0180005944.01 | 0.810302 | 1.233333e-50 | 7.407317e-48 |
| MsG0180005234.01 | MsG0180005985.01 | 0.804194 | 2.428643e-49 | 1.244351e-46 |
| MsG0180005234.01 | MsG0180006050.01 | 0.803942 | 2.740363e-49 | 1.395128e-46 |
| MsG0180005234.01 | MsG0280006367.01 | 0.849055 | 4.133255e-60 | 7.739429e-57 |
| MsG0180005234.01 | MsG0280006368.01 | 0.813257 | 2.805303e-51 | 1.822879e-48 |
| MsG0180005234.01 | MsG0280006892.01 | 0.803227 | 3.854124e-49 | 1.926282e-46 |
| MsG0180005234.01 | MsG0280007048.01 | 0.802861 | 4.588889e-49 | 2.272220e-46 |
| MsG0180005234.01 | MsG0280007087.01 | 0.812404 | 4.312890e-51 | 2.739871e-48 |
| MsG0180005234.01 | MsG0280007585.01 | 0.822560 | 2.218915e-53 | 1.863841e-50 |
| MsG0180005234.01 | MsG0280007710.01 | 0.806248 | 9.021839e-50 | 4.873287e-47 |
| MsG0180005234.01 | MsG0280007819.01 | 0.801256 | 9.808719e-49 | 4.662910e-46 |
| MsG0180005234.01 | MsG0280008134.01 | 0.817445 | 3.284795e-52 | 2.392732e-49 |
| MsG0180005234.01 | MsG0280008502.01 | 0.824310 | 8.653023e-54 | 7.635557e-51 |
| MsG0180005234.01 | MsG0280009441.01 | 0.833247 | 5.951991e-56 | 6.815418e-53 |
| MsG0180005234.01 | MsG0280010109.01 | 0.815239 | 1.023646e-51 | 7.018578e-49 |
| MsG0180005234.01 | MsG0280010447.01 | 0.801797 | 7.600814e-49 | 3.662944e-46 |
| MsG0180005234.01 | MsG0280010816.01 | 0.805652 | 1.203820e-49 | 6.404039e-47 |
| MsG0180005234.01 | MsG0280010866.01 | 0.812338 | 4.457302e-51 | 2.826575e-48 |
| MsG0180005234.01 | MsG0280011043.01 | 0.814656 | 1.378797e-51 | 9.306074e-49 |
| MsG0180005234.01 | MsG0280011075.01 | 0.817747 | 2.809260e-52 | 2.063337e-49 |
| MsG0180005234.01 | MsG0280011182.01 | 0.803095 | 4.104763e-49 | 2.044543e-46 |
| MsG0180005234.01 | MsG0280011201.01 | 0.802382 | 5.761832e-49 | 2.818552e-46 |
| MsG0180005234.01 | MsG0280011293.01 | 0.818108 | 2.328078e-52 | 1.726802e-49 |
| MsG0180005234.01 | MsG0280011336.01 | 0.809881 | 1.519546e-50 | 9.026977e-48 |
| MsG0180005234.01 | MsG0380012020.01 | 0.812579 | 3.948257e-51 | 2.519733e-48 |
| MsG0180005234.01 | MsG0380014576.01 | 0.852097 | 5.772297e-61 | 1.193133e-57 |
| MsG0180005234.01 | MsG0380015607.01 | 0.820589 | 6.332570e-53 | 5.031227e-50 |
| MsG0180005234.01 | MsG0380016905.01 | 0.812032 | 5.198043e-51 | 3.268737e-48 |
| MsG0180005234.01 | MsG0380016971.01 | 0.824735 | 6.870077e-54 | 6.138091e-51 |
| MsG0180005234.01 | MsG0380017210.01 | 0.843107 | 1.717127e-58 | 2.658445e-55 |
| MsG0180005234.01 | MsG0380017375.01 | 0.808277 | 3.352442e-50 | 1.908832e-47 |
| MsG0180005234.01 | MsG0380017476.01 | 0.810850 | 9.390734e-51 | 5.723363e-48 |
| MsG0180005234.01 | MsG0380017604.01 | 0.818228 | 2.187407e-52 | 1.627796e-49 |
| MsG0180005234.01 | MsG0380017631.01 | 0.804555 | 2.042211e-49 | 1.056125e-46 |
| MsG0180005234.01 | MsG0380017719.01 | 0.815890 | 7.330157e-52 | 5.116507e-49 |
| MsG0180005234.01 | MsG0480018462.01 | 0.811741 | 6.014468e-51 | 3.752915e-48 |
| MsG0180005234.01 | MsG0480018640.01 | 0.804620 | 1.978964e-49 | 1.025146e-46 |
| MsG0180005234.01 | MsG0480019289.01 | 0.804471 | 2.126627e-49 | 1.097392e-46 |
| MsG0180005234.01 | MsG0480020331.01 | 0.817592 | 3.045009e-52 | 2.226820e-49 |
| MsG0180005234.01 | MsG0480020530.01 | 0.808696 | 2.728048e-50 | 1.570298e-47 |
| MsG0180005234.01 | MsG0480020540.01 | 0.835540 | 1.581143e-56 | 1.939291e-53 |
| MsG0180005234.01 | MsG0480020719.01 | 0.829558 | 4.812125e-55 | 4.942155e-52 |
| MsG0180005234.01 | MsG0480021216.01 | 0.815195 | 1.046993e-51 | 7.170043e-49 |
| MsG0180005234.01 | MsG0480022318.01 | 0.846948 | 1.575486e-59 | 2.756687e-56 |
| MsG0180005234.01 | MsG0480022552.01 | 0.820517 | 6.578308e-53 | 5.216182e-50 |
| MsG0180005234.01 | MsG0480022678.01 | 0.831947 | 1.250414e-55 | 1.377611e-52 |
| MsG0180005234.01 | MsG0480023032.01 | 0.826830 | 2.187546e-54 | 2.074597e-51 |
| MsG0180005234.01 | MsG0480023143.01 | 0.814433 | 1.544646e-51 | 1.036332e-48 |
| MsG0180005234.01 | MsG0480023412.01 | 0.821767 | 3.389661e-53 | 2.783316e-50 |
| MsG0180005234.01 | MsG0480023554.01 | 0.807903 | 4.027242e-50 | 2.270262e-47 |
| MsG0180005234.01 | MsG0480023659.01 | 0.821857 | 3.230740e-53 | 2.659797e-50 |
| MsG0180005234.01 | MsG0480023873.01 | 0.809175 | 2.154957e-50 | 1.256396e-47 |
| MsG0180005234.01 | MsG0580024157.01 | 0.804240 | 2.375284e-49 | 1.218421e-46 |
| MsG0180005234.01 | MsG0580024205.01 | 0.801278 | 9.710241e-49 | 4.618640e-46 |
| MsG0180005234.01 | MsG0580024374.01 | 0.812811 | 3.513943e-51 | 2.256056e-48 |
| MsG0180005234.01 | MsG0580024536.01 | 0.832364 | 9.861769e-56 | 1.099823e-52 |
| MsG0180005234.01 | MsG0580024960.01 | 0.803159 | 3.981075e-49 | 1.986326e-46 |
| MsG0180005234.01 | MsG0580025184.01 | 0.821196 | 4.591009e-53 | 3.710253e-50 |
| MsG0180005234.01 | MsG0580025900.01 | 0.805265 | 1.450887e-49 | 7.641628e-47 |
| MsG0180005234.01 | MsG0580026664.01 | 0.803141 | 4.017221e-49 | 2.003343e-46 |
| MsG0180005234.01 | MsG0580027891.01 | 0.830526 | 2.794668e-55 | 2.951844e-52 |
| MsG0180005234.01 | MsG0580028747.01 | 0.811857 | 5.675148e-51 | 3.552042e-48 |
| MsG0180005234.01 | MsG0580029283.01 | 0.808894 | 2.474994e-50 | 1.432076e-47 |
| MsG0180005234.01 | MsG0580029371.01 | 0.823946 | 1.053496e-53 | 9.202524e-51 |
| MsG0180005234.01 | MsG0580029629.01 | 0.843419 | 1.417416e-58 | 2.216483e-55 |
| MsG0180005234.01 | MsG0580029647.01 | 0.815084 | 1.107832e-51 | 7.564092e-49 |
| MsG0180005234.01 | MsG0580029783.01 | 0.805181 | 1.510949e-49 | 7.941173e-47 |
| MsG0180005234.01 | MsG0580029801.01 | 0.821723 | 3.468895e-53 | 2.844860e-50 |
| MsG0180005234.01 | MsG0580030003.01 | 0.835133 | 2.003228e-56 | 2.427176e-53 |
| MsG0180005234.01 | MsG0580030204.01 | 0.821385 | 4.152730e-53 | 3.373464e-50 |
| MsG0180005234.01 | MsG0680031063.01 | 0.818279 | 2.129323e-52 | 1.586829e-49 |
| MsG0180005234.01 | MsG0680031508.01 | 0.802890 | 4.526096e-49 | 2.242797e-46 |
| MsG0180005234.01 | MsG0680031654.01 | 0.802908 | 4.488290e-49 | 2.225075e-46 |
| MsG0180005234.01 | MsG0680031699.01 | 0.830248 | 3.268332e-55 | 3.424739e-52 |
| MsG0180005234.01 | MsG0680032075.01 | 0.823403 | 1.411454e-53 | 1.213983e-50 |
| MsG0180005234.01 | MsG0680033392.01 | 0.805324 | 1.410132e-49 | 7.438503e-47 |
| MsG0180005234.01 | MsG0680034476.01 | 0.807590 | 4.692237e-50 | 2.623684e-47 |
| MsG0180005234.01 | MsG0680034757.01 | 0.827284 | 1.702886e-54 | 1.636686e-51 |
| MsG0180005234.01 | MsG0680035306.01 | 0.823932 | 1.061407e-53 | 9.267783e-51 |
| MsG0180005234.01 | MsG0780036773.01 | 0.813318 | 2.719437e-51 | 1.770116e-48 |
| MsG0180005234.01 | MsG0780037755.01 | 0.812878 | 3.396100e-51 | 2.184433e-48 |
| MsG0180005234.01 | MsG0780038565.01 | 0.815714 | 8.024710e-52 | 5.574889e-49 |
| MsG0180005234.01 | MsG0780038630.01 | 0.821991 | 3.007858e-53 | 2.485547e-50 |
| MsG0180005234.01 | MsG0780039587.01 | 0.833103 | 6.462753e-56 | 7.368983e-53 |
| MsG0180005234.01 | MsG0780039717.01 | 0.815330 | 9.772227e-52 | 6.717462e-49 |
| MsG0180005234.01 | MsG0780039777.01 | 0.804534 | 2.063290e-49 | 1.066428e-46 |
| MsG0180005234.01 | MsG0780039845.01 | 0.814814 | 1.271582e-51 | 8.619214e-49 |
| MsG0180005234.01 | MsG0780040125.01 | 0.841686 | 4.087150e-58 | 6.051524e-55 |
| MsG0180005234.01 | MsG0780040312.01 | 0.805775 | 1.134080e-49 | 6.052333e-47 |
| MsG0180005234.01 | MsG0780040519.01 | 0.813676 | 2.268970e-51 | 1.491348e-48 |
| MsG0180005234.01 | MsG0780040687.01 | 0.820332 | 7.254848e-53 | 5.723303e-50 |
| MsG0180005234.01 | MsG0780040742.01 | 0.818822 | 1.603795e-52 | 1.213255e-49 |
| MsG0180005234.01 | MsG0780040856.01 | 0.855474 | 6.160046e-62 | 1.423946e-58 |
| MsG0180005234.01 | MsG0780041127.01 | 0.835298 | 1.820910e-56 | 2.217680e-53 |
| MsG0180005234.01 | MsG0780041194.01 | 0.808073 | 3.704673e-50 | 2.097957e-47 |
| MsG0180005234.01 | MsG0780041305.01 | 0.845466 | 3.991103e-59 | 6.657134e-56 |
| MsG0180005234.01 | MsG0780041390.01 | 0.832632 | 8.461744e-56 | 9.512647e-53 |
| MsG0180005234.01 | MsG0780041423.01 | 0.818457 | 1.940964e-52 | 1.453761e-49 |
| MsG0180005234.01 | MsG0880042760.01 | 0.831364 | 1.740980e-55 | 1.885085e-52 |
| MsG0180005234.01 | MsG0880043116.01 | 0.815348 | 9.678163e-52 | 6.656187e-49 |
| MsG0180005234.01 | MsG0880043162.01 | 0.840725 | 7.312591e-58 | 1.050973e-54 |
| MsG0180005234.01 | MsG0880043341.01 | 0.802920 | 4.462584e-49 | 2.212991e-46 |
| MsG0180005234.01 | MsG0880043522.01 | 0.834048 | 3.754928e-56 | 4.404083e-53 |
| MsG0180005234.01 | MsG0880043533.01 | 0.844912 | 5.635230e-59 | 9.234179e-56 |
| MsG0180005234.01 | MsG0880045106.01 | 0.800643 | 1.309110e-48 | 6.127325e-46 |
| MsG0180005234.01 | MsG0880045165.01 | 0.827036 | 1.952461e-54 | 1.862845e-51 |
| MsG0180005234.01 | MsG0880045415.01 | 0.800983 | 1.115588e-48 | 5.267153e-46 |
| MsG0180005234.01 | MsG0880045619.01 | 0.812268 | 4.618168e-51 | 2.923004e-48 |
| MsG0180005234.01 | MsG0880045656.01 | 0.814082 | 1.846844e-51 | 1.227282e-48 |
| MsG0180005234.01 | MsG0880046027.01 | 0.806624 | 7.514239e-50 | 4.097727e-47 |
| MsG0180005234.01 | MsG0880046643.01 | 0.810814 | 9.557209e-51 | 5.819127e-48 |
| MsG0180005234.01 | MsG0880047428.01 | 0.824397 | 8.251543e-54 | 7.299942e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005234.01.T01 | MTR_1g095640 | 89.205 | 176 | 10 | 1 | 1 | 167 | 1 | 176 | 1.40e-108 | 316 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005234.01.T01 | AT5G50840 | 39.535 | 172 | 87 | 5 | 1 | 168 | 1 | 159 | 9.83e-20 | 85.1 |
| MsG0180005234.01.T01 | AT5G50840 | 38.150 | 173 | 89 | 5 | 1 | 168 | 1 | 160 | 2.85e-18 | 81.3 |
Find 46 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGAAGCTGGTTTGCTTC+TGG | 0.243236 | 1:+88924841 | None:intergenic |
| ATTGATTGTGGTCATTCTAA+TGG | 0.258912 | 1:-88924706 | MsG0180005234.01.T01:CDS |
| GTAAAGGATGCATGTGCTTC+AGG | 0.259994 | 1:-88923461 | MsG0180005234.01.T01:CDS |
| CTGATGGGCTTCTCTTGTTC+AGG | 0.299542 | 1:+88924751 | None:intergenic |
| GAAGCACATGCATCCTTTAC+AGG | 0.303336 | 1:+88923464 | None:intergenic |
| TACTACCGCATTCACACTAT+TGG | 0.319148 | 1:-88925541 | MsG0180005234.01.T01:five_prime_UTR |
| TCCTGAAGTTGATTCATTGC+CGG | 0.363142 | 1:-88924824 | MsG0180005234.01.T01:CDS |
| GGCTTCTCTTGTTCAGGAGT+TGG | 0.369688 | 1:+88924757 | None:intergenic |
| GTTGGAGTAGCAGGCGCAAC+AGG | 0.381038 | 1:+88924775 | None:intergenic |
| GGTTGCAGCTAAACAACCTT+TGG | 0.383471 | 1:-88923501 | MsG0180005234.01.T01:intron |
| TCCGGCAATGAATCAACTTC+AGG | 0.416327 | 1:+88924823 | None:intergenic |
| TTGCCGGATGGGTTTGTTGA+GGG | 0.434934 | 1:-88924808 | MsG0180005234.01.T01:CDS |
| AGTAGCAGGCGCAACAGGTT+CGG | 0.461107 | 1:+88924780 | None:intergenic |
| ACTCAAGTATCAACAAGTAT+TGG | 0.464833 | 1:-88922815 | MsG0180005234.01.T01:CDS |
| TTTACATCATTGCTTCTGGA+TGG | 0.479292 | 1:+88924529 | None:intergenic |
| TGTTCAGGAGTTGGAGTAGC+AGG | 0.487921 | 1:+88924766 | None:intergenic |
| CCTCTCAGACTGCTCGGTGG+AGG | 0.491915 | 1:-88924596 | MsG0180005234.01.T01:intron |
| ATGAATCAACTTCAGGAAGC+TGG | 0.495951 | 1:+88924830 | None:intergenic |
| ATCCTCCTTGTAATCACTGA+TGG | 0.503982 | 1:+88924735 | None:intergenic |
| TAATGGATTATCAAACGTGC+CGG | 0.510915 | 1:-88924689 | MsG0180005234.01.T01:CDS |
| AATTACATTTATCTGAACTC+TGG | 0.517076 | 1:+88924485 | None:intergenic |
| GAGGATGGTTTCATTGATTG+TGG | 0.524391 | 1:-88924718 | MsG0180005234.01.T01:CDS |
| GACAAAAGCACTGCCTGTAA+AGG | 0.524835 | 1:-88923477 | MsG0180005234.01.T01:CDS |
| GCGTGCACTTAAATCAGAAA+AGG | 0.525607 | 1:-88922854 | MsG0180005234.01.T01:CDS |
| GAAGTTGATTCATTGCCGGA+TGG | 0.529940 | 1:-88924820 | MsG0180005234.01.T01:CDS |
| CTCTCAGACTGCTCGGTGGA+GGG | 0.530354 | 1:-88924595 | MsG0180005234.01.T01:intron |
| TAAAGGATGCATGTGCTTCA+GGG | 0.531396 | 1:-88923460 | MsG0180005234.01.T01:CDS |
| GTGCCCTCAACAAACCCATC+CGG | 0.536588 | 1:+88924805 | None:intergenic |
| ATTGCCGGATGGGTTTGTTG+AGG | 0.550853 | 1:-88924809 | MsG0180005234.01.T01:CDS |
| AAGTTGATTCATTGCCGGAT+GGG | 0.555154 | 1:-88924819 | MsG0180005234.01.T01:CDS |
| GTATTGGCTGAAAGAGATGC+AGG | 0.555798 | 1:-88922799 | MsG0180005234.01.T01:CDS |
| GAAGCCCATCAGTGATTACA+AGG | 0.557693 | 1:-88924740 | MsG0180005234.01.T01:CDS |
| TCCTCCTTGTAATCACTGAT+GGG | 0.561879 | 1:+88924736 | None:intergenic |
| ATCAGTGATTACAAGGAGGA+TGG | 0.564958 | 1:-88924733 | MsG0180005234.01.T01:CDS |
| GCTTCTGGATGGTTGAGACT+CGG | 0.585832 | 1:+88924540 | None:intergenic |
| AATGGATTATCAAACGTGCC+GGG | 0.588211 | 1:-88924688 | MsG0180005234.01.T01:intron |
| TGGCTGAAAGAGATGCAGGT+TGG | 0.597210 | 1:-88922795 | MsG0180005234.01.T01:CDS |
| AAAGAGCAACAACAAGGAGA+AGG | 0.611330 | 1:-88924508 | MsG0180005234.01.T01:CDS |
| AATCATGGGGAATACCTAGC+GGG | 0.611569 | 1:+88925494 | None:intergenic |
| AAGATCCAATAGTGTGAATG+CGG | 0.655159 | 1:+88925536 | None:intergenic |
| GATGTAAAAGAGCAACAACA+AGG | 0.680608 | 1:-88924514 | MsG0180005234.01.T01:CDS |
| GGATGCATGTGCTTCAGGGA+TGG | 0.680755 | 1:-88923456 | MsG0180005234.01.T01:CDS |
| TCACCTCTCAGACTGCTCGG+TGG | 0.683389 | 1:-88924599 | MsG0180005234.01.T01:intron |
| TCGGAAACAGAACTAGCTAG+AGG | 0.687895 | 1:+88924559 | None:intergenic |
| TAGTTCACATAGAAGAAACA+AGG | 0.691456 | 1:-88925578 | MsG0180005234.01.T01:five_prime_UTR |
| GCCCATCAGTGATTACAAGG+AGG | 0.736966 | 1:-88924737 | MsG0180005234.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | Chr1:88925006-88925025 | MsG0180005234.01.T01:intron | 0.0% |
| !! | ATATATATATATATATGGTT+CGG | - | Chr1:88925033-88925052 | MsG0180005234.01.T01:intron | 10.0% |
| !!! | TTATTTTATTTTTTAAAGTG+AGG | - | Chr1:88923412-88923431 | MsG0180005234.01.T01:intron | 10.0% |
| !! | AATAATAAAAAAAAGACTCA+GGG | - | Chr1:88925208-88925227 | MsG0180005234.01.T01:intron | 15.0% |
| !! | ATAATCTACTTAATAAAGAA+CGG | + | Chr1:88924079-88924098 | None:intergenic | 15.0% |
| !! | TAATAATAAAAAAAAGACTC+AGG | - | Chr1:88925207-88925226 | MsG0180005234.01.T01:intron | 15.0% |
| !!! | GATAACTTTAAAAGAAAAAA+AGG | + | Chr1:88922916-88922935 | None:intergenic | 15.0% |
| !! | AAAAAAGGAAAAAAAGAAAG+AGG | + | Chr1:88922901-88922920 | None:intergenic | 20.0% |
| !! | AAAAAGGAAAAAAAGAAAGA+GGG | + | Chr1:88922900-88922919 | None:intergenic | 20.0% |
| !! | AATGCAAGAGATTAATTAAT+TGG | + | Chr1:88923066-88923085 | None:intergenic | 20.0% |
| !! | ACATTTGAAAAAAATAGAGA+AGG | + | Chr1:88924661-88924680 | None:intergenic | 20.0% |
| !! | ATAATAAAAAAAAGACTCAG+GGG | - | Chr1:88925209-88925228 | MsG0180005234.01.T01:intron | 20.0% |
| !! | ATCTTATATGATTGAACAAT+TGG | - | Chr1:88924555-88924574 | MsG0180005234.01.T01:CDS | 20.0% |
| !! | CATTTGAAAAAAATAGAGAA+GGG | + | Chr1:88924660-88924679 | None:intergenic | 20.0% |
| !! | GCATAAATTAATATAACTGA+CGG | - | Chr1:88924757-88924776 | MsG0180005234.01.T01:CDS | 20.0% |
| !! | TGATACCAACAATTTAAAAA+TGG | + | Chr1:88923018-88923037 | None:intergenic | 20.0% |
| !!! | AAAATAGTCTTATCAAATAG+AGG | + | Chr1:88925108-88925127 | None:intergenic | 20.0% |
| !!! | ATAAGAGATTTTTGAAATGT+AGG | - | Chr1:88923489-88923508 | MsG0180005234.01.T01:CDS | 20.0% |
| !!! | ATGAAATTTGATAGTAGTTT+AGG | - | Chr1:88923246-88923265 | MsG0180005234.01.T01:intron | 20.0% |
| !!! | CATTTTTATTTTGTGTGTTT+AGG | - | Chr1:88923082-88923101 | MsG0180005234.01.T01:intron | 20.0% |
| !!! | CTTAAAAGCAAGTTTTAATT+TGG | - | Chr1:88923981-88924000 | MsG0180005234.01.T01:intron | 20.0% |
| !!! | TTCTTCCATTTTTAAATTGT+TGG | - | Chr1:88923010-88923029 | MsG0180005234.01.T01:intron | 20.0% |
| !!! | TTTTAAAGTGAGGATTAAAT+TGG | - | Chr1:88923422-88923441 | MsG0180005234.01.T01:intron | 20.0% |
| ! | AAATAAAATGCGATAGTTGA+TGG | + | Chr1:88925145-88925164 | None:intergenic | 25.0% |
| ! | AAATAGCATGAGTATGAAAA+TGG | + | Chr1:88924206-88924225 | None:intergenic | 25.0% |
| ! | AATAAAATGCGATAGTTGAT+GGG | + | Chr1:88925144-88925163 | None:intergenic | 25.0% |
| ! | AATAGCATGAGTATGAAAAT+GGG | + | Chr1:88924205-88924224 | None:intergenic | 25.0% |
| ! | AATTACATTTATCTGAACTC+TGG | + | Chr1:88923884-88923903 | None:intergenic | 25.0% |
| ! | ACTACTATCAAATTTCATCA+AGG | + | Chr1:88923244-88923263 | None:intergenic | 25.0% |
| ! | ATATACATAGTTAGACAAGA+TGG | + | Chr1:88924414-88924433 | None:intergenic | 25.0% |
| ! | ATGCCTAATTCAATACAATA+TGG | + | Chr1:88924349-88924368 | None:intergenic | 25.0% |
| ! | CTACTATCAAATTTCATCAA+GGG | + | Chr1:88923243-88923262 | None:intergenic | 25.0% |
| ! | CTATAAACAAAAGAGTTTCA+TGG | + | Chr1:88924306-88924325 | None:intergenic | 25.0% |
| ! | GAAAGAAGAAAAGTTTACAT+TGG | + | Chr1:88924128-88924147 | None:intergenic | 25.0% |
| ! | TAAATACGAAGTCTACAAAA+GGG | + | Chr1:88923924-88923943 | None:intergenic | 25.0% |
| ! | TAACAACAAAATTACAGCTA+CGG | + | Chr1:88923154-88923173 | None:intergenic | 25.0% |
| ! | TAATAAAAAAAAGACTCAGG+GGG | - | Chr1:88925210-88925229 | MsG0180005234.01.T01:intron | 25.0% |
| ! | TATCTCTTTAGTATCTGATA+AGG | - | Chr1:88924820-88924839 | MsG0180005234.01.T01:CDS | 25.0% |
| ! | TCTCCATATTGTATTGAATT+AGG | - | Chr1:88924343-88924362 | MsG0180005234.01.T01:intron | 25.0% |
| ! | TGACAAAAAAAAATTGTGAC+TGG | - | Chr1:88923370-88923389 | MsG0180005234.01.T01:intron | 25.0% |
| ! | TGACAAAATAAAGATTCAGA+GGG | - | Chr1:88925284-88925303 | MsG0180005234.01.T01:intron | 25.0% |
| ! | TTGACAAAATAAAGATTCAG+AGG | - | Chr1:88925283-88925302 | MsG0180005234.01.T01:intron | 25.0% |
| !!! | AGCTGTAATTTTGTTGTTAT+TGG | - | Chr1:88923155-88923174 | MsG0180005234.01.T01:intron | 25.0% |
| !!! | CTCTATTTTTTTCAAATGTG+TGG | - | Chr1:88924662-88924681 | MsG0180005234.01.T01:intron | 25.0% |
| !!! | TAAATTGGAGTTTTTTCTGA+AGG | - | Chr1:88923437-88923456 | MsG0180005234.01.T01:CDS | 25.0% |
| !!! | TTTTTTGTCAAATAACCTAG+TGG | + | Chr1:88923360-88923379 | None:intergenic | 25.0% |
| AAAAGAAAGAGGGATAATCA+TGG | + | Chr1:88922890-88922909 | None:intergenic | 30.0% | |
| AAAGAAAGAGGGATAATCAT+GGG | + | Chr1:88922889-88922908 | None:intergenic | 30.0% | |
| AAATAAAGATTCAGAGGGTT+AGG | - | Chr1:88925289-88925308 | MsG0180005234.01.T01:intron | 30.0% | |
| AAATACGAAGTCTACAAAAG+GGG | + | Chr1:88923923-88923942 | None:intergenic | 30.0% | |
| AATTTGAGGGTCATAACAAA+AGG | + | Chr1:88924373-88924392 | None:intergenic | 30.0% | |
| ACAAAATAATGACTCGTAGA+GGG | - | Chr1:88925319-88925338 | MsG0180005234.01.T01:intron | 30.0% | |
| ACCTAAAAAATTCCATGAGT+AGG | + | Chr1:88924163-88924182 | None:intergenic | 30.0% | |
| ACTCAAGTATCAACAAGTAT+TGG | - | Chr1:88925551-88925570 | MsG0180005234.01.T01:five_prime_UTR | 30.0% | |
| ATATGGAGAATGTTTGAACT+AGG | + | Chr1:88924332-88924351 | None:intergenic | 30.0% | |
| ATTGATTGTGGTCATTCTAA+TGG | - | Chr1:88923660-88923679 | MsG0180005234.01.T01:intron | 30.0% | |
| ATTTGAGGGTCATAACAAAA+GGG | + | Chr1:88924372-88924391 | None:intergenic | 30.0% | |
| CAATAACATCTCTCTACAAT+GGG | + | Chr1:88923131-88923150 | None:intergenic | 30.0% | |
| CATGAGTAGGAAAATGAATA+AGG | + | Chr1:88924150-88924169 | None:intergenic | 30.0% | |
| CTAAATACGAAGTCTACAAA+AGG | + | Chr1:88923925-88923944 | None:intergenic | 30.0% | |
| CTGTTAACAGTCATAATTGA+CGG | - | Chr1:88924692-88924711 | MsG0180005234.01.T01:CDS | 30.0% | |
| GGAAGGTTGTAAAAGTAAAA+TGG | - | Chr1:88924601-88924620 | MsG0180005234.01.T01:intron | 30.0% | |
| GGTTTGAAGAACAAATTTGT+TGG | - | Chr1:88924493-88924512 | MsG0180005234.01.T01:CDS | 30.0% | |
| TAGTTCACATAGAAGAAACA+AGG | - | Chr1:88922788-88922807 | MsG0180005234.01.T01:CDS | 30.0% | |
| TATGATTGAACAATTGGAGA+CGG | - | Chr1:88924561-88924580 | MsG0180005234.01.T01:CDS | 30.0% | |
| TATTGAGTAGGGAATTCATT+CGG | - | Chr1:88925246-88925265 | MsG0180005234.01.T01:intron | 30.0% | |
| TCTGAAGGAAAGGATTAAAT+TGG | - | Chr1:88923452-88923471 | MsG0180005234.01.T01:CDS | 30.0% | |
| TCTGTTACCATTGTTAATTG+TGG | - | Chr1:88924844-88924863 | MsG0180005234.01.T01:CDS | 30.0% | |
| TGATTAGGTTCTATTGAGTA+GGG | - | Chr1:88925235-88925254 | MsG0180005234.01.T01:intron | 30.0% | |
| TGTCTTGATCATTTGCTTAT+GGG | - | Chr1:88924024-88924043 | MsG0180005234.01.T01:intron | 30.0% | |
| TTGATTAGGTTCTATTGAGT+AGG | - | Chr1:88925234-88925253 | MsG0180005234.01.T01:intron | 30.0% | |
| TTGTCTTGATCATTTGCTTA+TGG | - | Chr1:88924023-88924042 | MsG0180005234.01.T01:intron | 30.0% | |
| TTTACATTGGTACAACACAT+TGG | + | Chr1:88924115-88924134 | None:intergenic | 30.0% | |
| ! | CTTATTCATTTTCCTACTCA+TGG | - | Chr1:88924148-88924167 | MsG0180005234.01.T01:intron | 30.0% |
| ! | GTCAAACTTCTAATTTTCTC+AGG | - | Chr1:88925461-88925480 | MsG0180005234.01.T01:intron | 30.0% |
| ! | TCTAATTTTCTCAGGAAACT+GGG | - | Chr1:88925469-88925488 | MsG0180005234.01.T01:intron | 30.0% |
| ! | TTCTAATTTTCTCAGGAAAC+TGG | - | Chr1:88925468-88925487 | MsG0180005234.01.T01:intron | 30.0% |
| !! | AATATAACTGACGGATTCTT+TGG | - | Chr1:88924766-88924785 | MsG0180005234.01.T01:CDS | 30.0% |
| !! | GAAGAACAAATTTGTTGGAA+AGG | - | Chr1:88924498-88924517 | MsG0180005234.01.T01:CDS | 30.0% |
| !!! | AGTTTTTTTCCCCTTTCTTT+TGG | - | Chr1:88925401-88925420 | MsG0180005234.01.T01:intron | 30.0% |
| !!! | TCCTACTCATGGAATTTTTT+AGG | - | Chr1:88924159-88924178 | MsG0180005234.01.T01:intron | 30.0% |
| !!! | TCTTTTTTGCATTTCTCTGT+TGG | - | Chr1:88925370-88925389 | MsG0180005234.01.T01:intron | 30.0% |
| AAGAAAGAGGGATAATCATG+GGG | + | Chr1:88922888-88922907 | None:intergenic | 35.0% | |
| AAGATCCAATAGTGTGAATG+CGG | + | Chr1:88922833-88922852 | None:intergenic | 35.0% | |
| AAGATGGATAATTCAGAGAG+AGG | + | Chr1:88924398-88924417 | None:intergenic | 35.0% | |
| ACAACACTCTATTGTAGAGT+CGG | + | Chr1:88924007-88924026 | None:intergenic | 35.0% | |
| AGATGGATAATTCAGAGAGA+GGG | + | Chr1:88924397-88924416 | None:intergenic | 35.0% | |
| CAAATAGAGGCAAAGTTACT+CGG | + | Chr1:88925095-88925114 | None:intergenic | 35.0% | |
| GACAAAATAATGACTCGTAG+AGG | - | Chr1:88925318-88925337 | MsG0180005234.01.T01:intron | 35.0% | |
| GATGTAAAAGAGCAACAACA+AGG | - | Chr1:88923852-88923871 | MsG0180005234.01.T01:intron | 35.0% | |
| GCAATAACATCTCTCTACAA+TGG | + | Chr1:88923132-88923151 | None:intergenic | 35.0% | |
| GTATATGAACGCTAAGCTAA+AGG | + | Chr1:88924534-88924553 | None:intergenic | 35.0% | |
| GTATGACATGCCAAAAGAAA+GGG | + | Chr1:88925414-88925433 | None:intergenic | 35.0% | |
| GTCTTGATCATTTGCTTATG+GGG | - | Chr1:88924025-88924044 | MsG0180005234.01.T01:intron | 35.0% | |
| TATGACATGCCAAAAGAAAG+GGG | + | Chr1:88925413-88925432 | None:intergenic | 35.0% | |
| TCAGAGCGGAAAAGATTTAT+AGG | + | Chr1:88924455-88924474 | None:intergenic | 35.0% | |
| TCTTGATCATTTGCTTATGG+GGG | - | Chr1:88924026-88924045 | MsG0180005234.01.T01:intron | 35.0% | |
| TGAAGCTAATTGAATGTGCA+TGG | - | Chr1:88924472-88924491 | MsG0180005234.01.T01:intron | 35.0% | |
| TGTATGACATGCCAAAAGAA+AGG | + | Chr1:88925415-88925434 | None:intergenic | 35.0% | |
| TTTACATCATTGCTTCTGGA+TGG | + | Chr1:88923840-88923859 | None:intergenic | 35.0% | |
| ! | ACATTCAATTAGCTTCAGAG+CGG | + | Chr1:88924469-88924488 | None:intergenic | 35.0% |
| ! | CTAATTTTCTCAGGAAACTG+GGG | - | Chr1:88925470-88925489 | MsG0180005234.01.T01:intron | 35.0% |
| ! | CTCTTTTACATCATTGCTTC+TGG | + | Chr1:88923844-88923863 | None:intergenic | 35.0% |
| ! | TTCTTTTGGCATGTCATACA+TGG | - | Chr1:88925415-88925434 | MsG0180005234.01.T01:intron | 35.0% |
| !! | TAATGGATTATCAAACGTGC+CGG | - | Chr1:88923677-88923696 | MsG0180005234.01.T01:intron | 35.0% |
| !! | TTTACTTTTACAACCTTCCC+CGG | + | Chr1:88924600-88924619 | None:intergenic | 35.0% |
| !!! | TGGAGTTTTTTCTGAAGGAA+AGG | - | Chr1:88923442-88923461 | MsG0180005234.01.T01:CDS | 35.0% |
| AAAGAGCAACAACAAGGAGA+AGG | - | Chr1:88923858-88923877 | MsG0180005234.01.T01:intron | 40.0% | |
| ACGTGCAACAATTTGTGATC+TGG | + | Chr1:88922963-88922982 | None:intergenic | 40.0% | |
| AGTAGGGAATTCATTCGGAA+GGG | - | Chr1:88925251-88925270 | MsG0180005234.01.T01:intron | 40.0% | |
| ATCAGTGATTACAAGGAGGA+TGG | - | Chr1:88923633-88923652 | MsG0180005234.01.T01:intron | 40.0% | |
| ATCCTCCTTGTAATCACTGA+TGG | + | Chr1:88923634-88923653 | None:intergenic | 40.0% | |
| ATGAATCAACTTCAGGAAGC+TGG | + | Chr1:88923539-88923558 | None:intergenic | 40.0% | |
| ATGTGTGCATGTCTACTTTC+TGG | - | Chr1:88924266-88924285 | MsG0180005234.01.T01:intron | 40.0% | |
| CAATGCATGCAGAGATATAC+AGG | + | Chr1:88924982-88925001 | None:intergenic | 40.0% | |
| CGTGCAACAATTTGTGATCT+GGG | + | Chr1:88922962-88922981 | None:intergenic | 40.0% | |
| CTATTTGCACTGCACTCTTT+CGG | - | Chr1:88922986-88923005 | MsG0180005234.01.T01:intron | 40.0% | |
| CTGTATATCTCTGCATGCAT+TGG | - | Chr1:88924980-88924999 | MsG0180005234.01.T01:intron | 40.0% | |
| CTTTGCTTACAACAGCAAGA+AGG | - | Chr1:88923289-88923308 | MsG0180005234.01.T01:intron | 40.0% | |
| GCGTGCACTTAAATCAGAAA+AGG | - | Chr1:88925512-88925531 | MsG0180005234.01.T01:five_prime_UTR | 40.0% | |
| GCTGCAACCACAATTAACAA+TGG | + | Chr1:88924854-88924873 | None:intergenic | 40.0% | |
| GTTCACTAATTTCGCTTACC+CGG | + | Chr1:88923699-88923718 | None:intergenic | 40.0% | |
| TAAAGGATGCATGTGCTTCA+GGG | - | Chr1:88924906-88924925 | MsG0180005234.01.T01:intron | 40.0% | |
| TAATCATGGGGAATACCTAG+CGG | + | Chr1:88922876-88922895 | None:intergenic | 40.0% | |
| TACTACCGCATTCACACTAT+TGG | - | Chr1:88922825-88922844 | MsG0180005234.01.T01:CDS | 40.0% | |
| TCAGAGAGAGGGTAATTTGA+GGG | + | Chr1:88924386-88924405 | None:intergenic | 40.0% | |
| TCCTCCTTGTAATCACTGAT+GGG | + | Chr1:88923633-88923652 | None:intergenic | 40.0% | |
| TTCAGAGAGAGGGTAATTTG+AGG | + | Chr1:88924387-88924406 | None:intergenic | 40.0% | |
| TTTGTTCTCTGCCTTTCTCT+CGG | - | Chr1:88925064-88925083 | MsG0180005234.01.T01:intron | 40.0% | |
| ! | AAGTTGATTCATTGCCGGAT+GGG | - | Chr1:88923547-88923566 | MsG0180005234.01.T01:intron | 40.0% |
| ! | GAGGATGGTTTCATTGATTG+TGG | - | Chr1:88923648-88923667 | MsG0180005234.01.T01:intron | 40.0% |
| ! | TCCTGAAGTTGATTCATTGC+CGG | - | Chr1:88923542-88923561 | MsG0180005234.01.T01:intron | 40.0% |
| !! | AATGGATTATCAAACGTGCC+GGG | - | Chr1:88923678-88923697 | MsG0180005234.01.T01:intron | 40.0% |
| !! | TTACTTTTACAACCTTCCCC+GGG | + | Chr1:88924599-88924618 | None:intergenic | 40.0% |
| !! | TTCTTTTGATTCTTCCCGCT+AGG | - | Chr1:88922858-88922877 | MsG0180005234.01.T01:CDS | 40.0% |
| AACAGCAAGAAGGTAGCTGT+AGG | - | Chr1:88923299-88923318 | MsG0180005234.01.T01:intron | 45.0% | |
| AAGACTCAGGGGGTTTGATT+AGG | - | Chr1:88925220-88925239 | MsG0180005234.01.T01:intron | 45.0% | |
| AATCATGGGGAATACCTAGC+GGG | + | Chr1:88922875-88922894 | None:intergenic | 45.0% | |
| ACAGCAAGAAGGTAGCTGTA+GGG | - | Chr1:88923300-88923319 | MsG0180005234.01.T01:intron | 45.0% | |
| AGTGGCGAGAATAGAATTGC+AGG | + | Chr1:88923342-88923361 | None:intergenic | 45.0% | |
| GAAACTGGGGAAAAACGCAA+GGG | - | Chr1:88925483-88925502 | MsG0180005234.01.T01:intron | 45.0% | |
| GAAGCACATGCATCCTTTAC+AGG | + | Chr1:88924905-88924924 | None:intergenic | 45.0% | |
| GAAGCCCATCAGTGATTACA+AGG | - | Chr1:88923626-88923645 | MsG0180005234.01.T01:intron | 45.0% | |
| GAGTAGGGAATTCATTCGGA+AGG | - | Chr1:88925250-88925269 | MsG0180005234.01.T01:intron | 45.0% | |
| GCAATTCTATTCTCGCCACT+AGG | - | Chr1:88923342-88923361 | MsG0180005234.01.T01:intron | 45.0% | |
| GGTTGCAGCTAAACAACCTT+TGG | - | Chr1:88924865-88924884 | MsG0180005234.01.T01:intron | 45.0% | |
| GTAAAGGATGCATGTGCTTC+AGG | - | Chr1:88924905-88924924 | MsG0180005234.01.T01:intron | 45.0% | |
| TAGACATGCACACATCAGCA+AGG | + | Chr1:88924261-88924280 | None:intergenic | 45.0% | |
| TCCGGCAATGAATCAACTTC+AGG | + | Chr1:88923546-88923565 | None:intergenic | 45.0% | |
| TCGGAAACAGAACTAGCTAG+AGG | + | Chr1:88923810-88923829 | None:intergenic | 45.0% | |
| TGTCATACATGGCTACGTTC+AGG | - | Chr1:88925426-88925445 | MsG0180005234.01.T01:intron | 45.0% | |
| ! | GAAGTTGATTCATTGCCGGA+TGG | - | Chr1:88923546-88923565 | MsG0180005234.01.T01:intron | 45.0% |
| ! | TACTTTTACAACCTTCCCCG+GGG | + | Chr1:88924598-88924617 | None:intergenic | 45.0% |
| ! | TTTTCACCTCTCAGACTGCT+CGG | - | Chr1:88923764-88923783 | MsG0180005234.01.T01:intron | 45.0% |
| !! | GACAAAAGCACTGCCTGTAA+AGG | - | Chr1:88924889-88924908 | MsG0180005234.01.T01:intron | 45.0% |
| !! | GTATTGGCTGAAAGAGATGC+AGG | - | Chr1:88925567-88925586 | MsG0180005234.01.T01:five_prime_UTR | 45.0% |
| !!! | GGAATTTTTTAGGTGCCCCT+GGG | - | Chr1:88924169-88924188 | MsG0180005234.01.T01:intron | 45.0% |
| !!! | TGGAATTTTTTAGGTGCCCC+TGG | - | Chr1:88924168-88924187 | MsG0180005234.01.T01:intron | 45.0% |
| !! | AAAATTATTATTAATTAAAG+TGG | + | Chr1:88924636-88924655 | None:intergenic | 5.0% |
| !! | TTAAAAAATAAAATAAAATC+AGG | + | Chr1:88923408-88923427 | None:intergenic | 5.0% |
| AAATGGGACCTATTGCACCC+AGG | + | Chr1:88924189-88924208 | None:intergenic | 50.0% | |
| AATGGGACCTATTGCACCCA+GGG | + | Chr1:88924188-88924207 | None:intergenic | 50.0% | |
| GCCCATCAGTGATTACAAGG+AGG | - | Chr1:88923629-88923648 | MsG0180005234.01.T01:intron | 50.0% | |
| GCTTCTGGATGGTTGAGACT+CGG | + | Chr1:88923829-88923848 | None:intergenic | 50.0% | |
| GGAAACTGGGGAAAAACGCA+AGG | - | Chr1:88925482-88925501 | MsG0180005234.01.T01:intron | 50.0% | |
| GGCTTCTCTTGTTCAGGAGT+TGG | + | Chr1:88923612-88923631 | None:intergenic | 50.0% | |
| TGGCTGAAAGAGATGCAGGT+TGG | - | Chr1:88925571-88925590 | MsG0180005234.01.T01:five_prime_UTR | 50.0% | |
| TGTTCAGGAGTTGGAGTAGC+AGG | + | Chr1:88923603-88923622 | None:intergenic | 50.0% | |
| ! | ACTTTTACAACCTTCCCCGG+GGG | + | Chr1:88924597-88924616 | None:intergenic | 50.0% |
| ! | GGCAGTGCTTTTGTCTCCAA+AGG | + | Chr1:88924884-88924903 | None:intergenic | 50.0% |
| !! | ATTGCCGGATGGGTTTGTTG+AGG | - | Chr1:88923557-88923576 | MsG0180005234.01.T01:intron | 50.0% |
| !! | CAAAAGGGGCATCGATGGTT+AGG | + | Chr1:88923909-88923928 | None:intergenic | 50.0% |
| !! | CTGATGGGCTTCTCTTGTTC+AGG | + | Chr1:88923618-88923637 | None:intergenic | 50.0% |
| !! | GTCTACAAAAGGGGCATCGA+TGG | + | Chr1:88923914-88923933 | None:intergenic | 50.0% |
| !! | TCAGGAAGCTGGTTTGCTTC+TGG | + | Chr1:88923528-88923547 | None:intergenic | 50.0% |
| !! | TTGCCGGATGGGTTTGTTGA+GGG | - | Chr1:88923558-88923577 | MsG0180005234.01.T01:intron | 50.0% |
| ACTCGGAGAGTCCGAGAGAA+AGG | + | Chr1:88925078-88925097 | None:intergenic | 55.0% | |
| AGACGGAGTTCAAATCCCCC+CGG | - | Chr1:88924578-88924597 | MsG0180005234.01.T01:CDS | 55.0% | |
| AGTAGCAGGCGCAACAGGTT+CGG | + | Chr1:88923589-88923608 | None:intergenic | 55.0% | |
| ATGGGACCTATTGCACCCAG+GGG | + | Chr1:88924187-88924206 | None:intergenic | 55.0% | |
| GGATGCATGTGCTTCAGGGA+TGG | - | Chr1:88924910-88924929 | MsG0180005234.01.T01:intron | 55.0% | |
| GTGCCCTCAACAAACCCATC+CGG | + | Chr1:88923564-88923583 | None:intergenic | 55.0% | |
| ! | CTTTTACAACCTTCCCCGGG+GGG | + | Chr1:88924596-88924615 | None:intergenic | 55.0% |
| ACGGAGTTCAAATCCCCCCG+GGG | - | Chr1:88924580-88924599 | MsG0180005234.01.T01:CDS | 60.0% | |
| AGTTCAAATCCCCCCGGGGA+AGG | - | Chr1:88924584-88924603 | MsG0180005234.01.T01:CDS | 60.0% | |
| GACGGAGTTCAAATCCCCCC+GGG | - | Chr1:88924579-88924598 | MsG0180005234.01.T01:CDS | 60.0% | |
| GTTGGAGTAGCAGGCGCAAC+AGG | + | Chr1:88923594-88923613 | None:intergenic | 60.0% | |
| TAGGTGCCCCTGGGTGCAAT+AGG | - | Chr1:88924178-88924197 | MsG0180005234.01.T01:intron | 60.0% | |
| TCACCTCTCAGACTGCTCGG+TGG | - | Chr1:88923767-88923786 | MsG0180005234.01.T01:intron | 60.0% | |
| ! | CTCTCAGACTGCTCGGTGGA+GGG | - | Chr1:88923771-88923790 | MsG0180005234.01.T01:intron | 60.0% |
| CCTCCACCGAGCAGTCTGAG+AGG | + | Chr1:88923773-88923792 | None:intergenic | 65.0% | |
| ! | CCTCTCAGACTGCTCGGTGG+AGG | - | Chr1:88923770-88923789 | MsG0180005234.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 88922780 | 88925608 | 88922780 | ID=MsG0180005234.01;Name=MsG0180005234.01 |
| Chr1 | mRNA | 88922780 | 88925608 | 88922780 | ID=MsG0180005234.01.T01;Parent=MsG0180005234.01;Name=MsG0180005234.01.T01;_AED=0.49;_eAED=0.50;_QI=105|1|0.8|1|0.75|0.6|5|0|171 |
| Chr1 | exon | 88922780 | 88922905 | 88922780 | ID=MsG0180005234.01.T01:exon:11133;Parent=MsG0180005234.01.T01 |
| Chr1 | exon | 88923430 | 88923515 | 88923430 | ID=MsG0180005234.01.T01:exon:11132;Parent=MsG0180005234.01.T01 |
| Chr1 | exon | 88924491 | 88924610 | 88924491 | ID=MsG0180005234.01.T01:exon:11131;Parent=MsG0180005234.01.T01 |
| Chr1 | exon | 88924689 | 88924877 | 88924689 | ID=MsG0180005234.01.T01:exon:11130;Parent=MsG0180005234.01.T01 |
| Chr1 | exon | 88925509 | 88925608 | 88925509 | ID=MsG0180005234.01.T01:exon:11129;Parent=MsG0180005234.01.T01 |
| Chr1 | five_prime_UTR | 88925509 | 88925608 | 88925509 | ID=MsG0180005234.01.T01:five_prime_utr;Parent=MsG0180005234.01.T01 |
| Chr1 | five_prime_UTR | 88924873 | 88924877 | 88924873 | ID=MsG0180005234.01.T01:five_prime_utr;Parent=MsG0180005234.01.T01 |
| Chr1 | CDS | 88924689 | 88924872 | 88924689 | ID=MsG0180005234.01.T01:cds;Parent=MsG0180005234.01.T01 |
| Chr1 | CDS | 88924491 | 88924610 | 88924491 | ID=MsG0180005234.01.T01:cds;Parent=MsG0180005234.01.T01 |
| Chr1 | CDS | 88923430 | 88923515 | 88923430 | ID=MsG0180005234.01.T01:cds;Parent=MsG0180005234.01.T01 |
| Chr1 | CDS | 88922780 | 88922905 | 88922780 | ID=MsG0180005234.01.T01:cds;Parent=MsG0180005234.01.T01 |
| Gene Sequence |
| Protein sequence |
