AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 32 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTACAATACTGTTCTTCT+TGG 0.280222 1_3:+56044874 None:intergenic
CAATGTCAGGAAAGCTTGTT+TGG 0.329019 1_3:-56045951 Msa0126900:CDS
TTGCAATGTTCAATAGTATC+AGG 0.388193 1_3:-56045909 Msa0126900:CDS
GACATACATGTCTACATTGC+AGG 0.402708 1_3:-56045844 Msa0126900:intron
CAGAGATGGATTCGTGGATC+AGG 0.433684 1_3:+56044795 None:intergenic
ACTGTGCCTTTGTCAATGTC+AGG 0.443405 1_3:-56045964 Msa0126900:CDS
CAGGAATCAGAACTTGGCTC+TGG 0.444827 1_3:-56045890 Msa0126900:CDS
TATTGAGGTGCTGGCTGCTA+TGG 0.459330 1_3:+56044927 None:intergenic
AGTGTGTAAGTGGTTTCATT+TGG 0.459889 1_3:-56044967 Msa0126900:CDS
GTCAGGAAAGCTTGTTTGGA+TGG 0.471241 1_3:-56045947 Msa0126900:CDS
CGTAGATGCTATTGAGGTGC+TGG 0.472385 1_3:+56044918 None:intergenic
TTGGATCAACAGTGTGTAAG+TGG 0.498384 1_3:-56044977 Msa0126900:CDS
ATATCTTGTTTGTGCAGAGA+TGG 0.502644 1_3:+56044781 None:intergenic
ATCCAGCAAAACCAATCCCT+TGG 0.503275 1_3:-56044996 Msa0126900:CDS
GCGATATGACGCGATGGAGC+TGG 0.512235 1_3:+56045020 None:intergenic
ACACTGTTGATCCAAGGGAT+TGG 0.546994 1_3:+56044985 None:intergenic
TCAGGAAAGCTTGTTTGGAT+GGG 0.552185 1_3:-56045946 Msa0126900:CDS
AAGAATCGTAGATGCTATTG+AGG 0.568594 1_3:+56044912 None:intergenic
TAGTATCAGGAATCAGAACT+TGG 0.570411 1_3:-56045896 Msa0126900:CDS
TTTGTGCAGAGATGGATTCG+TGG 0.583290 1_3:+56044789 None:intergenic
TGAACATTGCAATACATAGG+TGG 0.583589 1_3:+56045920 None:intergenic
GAACATTGCAATACATAGGT+GGG 0.586270 1_3:+56045921 None:intergenic
CTTACACACTGTTGATCCAA+GGG 0.591039 1_3:+56044980 None:intergenic
TGTAACTAATAACCGTCGGC+TGG 0.592322 1_3:-56044858 Msa0126900:CDS
AGGAATCAGAACTTGGCTCT+GGG 0.596621 1_3:-56045889 Msa0126900:CDS
ACTTACACACTGTTGATCCA+AGG 0.605388 1_3:+56044979 None:intergenic
TATTGAACATTGCAATACAT+AGG 0.610369 1_3:+56045917 None:intergenic
AGCTTTCCTGACATTGACAA+AGG 0.634619 1_3:+56045958 None:intergenic
GAGTCAAAAGTGCCAGCCGA+CGG 0.652825 1_3:+56044846 None:intergenic
GTATTGTAACTAATAACCGT+CGG 0.671596 1_3:-56044862 Msa0126900:CDS
CTGGCTGCTATGGTTAACAA+AGG 0.686433 1_3:+56044937 None:intergenic
TGGATGGCGATATGACGCGA+TGG 0.754757 1_3:+56045014 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAAAAAAATCAATG+AGG + chr1_3:56045907-56045926 None:intergenic 10.0%
!! TATAAAAAAAAAAATCAATG+AGG + chr1_3:56045907-56045926 None:intergenic 10.0%
!!! AAAAAAAAAAACATTTGTTG+AGG + chr1_3:56044843-56044862 None:intergenic 15.0%
!!! AATTTTAAAAATGAAGTTAC+AGG + chr1_3:56045947-56045966 None:intergenic 15.0%
!!! TGTAACTTCATTTTTAAAAT+TGG - chr1_3:56045946-56045965 Msa0126900:CDS 15.0%
!!! ATTATAACTTTTTTTTGAAC+CGG + chr1_3:56046113-56046132 None:intergenic 15.0%
!!! AAAAAAAAAAACATTTGTTG+AGG + chr1_3:56044843-56044862 None:intergenic 15.0%
!!! AATTTTAAAAATGAAGTTAC+AGG + chr1_3:56045947-56045966 None:intergenic 15.0%
!!! TGTAACTTCATTTTTAAAAT+TGG - chr1_3:56045946-56045965 Msa0126900:CDS 15.0%
!!! ATTATAACTTTTTTTTGAAC+CGG + chr1_3:56046113-56046132 None:intergenic 15.0%
!!! TACTAGTTTGTGTTATTTAA+CGG - chr1_3:56045007-56045026 Msa0126900:CDS 20.0%
!! AATAACAATAACATGAAACA+AGG + chr1_3:56045112-56045131 None:intergenic 20.0%
!!! CTTCTAGTTCATTTTATTTT+TGG - chr1_3:56045206-56045225 Msa0126900:intron 20.0%
!! GTAATGTATCATAATTATCA+TGG - chr1_3:56045370-56045389 Msa0126900:intron 20.0%
!!! ATTTTGTATACAATTTACAG+AGG - chr1_3:56045845-56045864 Msa0126900:CDS 20.0%
!! GTTATAATATTTCATTTCTG+TGG - chr1_3:56046125-56046144 Msa0126900:intron 20.0%
!!! ACGTTTTCAAAAAATATTTC+CGG + chr1_3:56046346-56046365 None:intergenic 20.0%
!!! TACTAGTTTGTGTTATTTAA+CGG - chr1_3:56045007-56045026 Msa0126900:CDS 20.0%
!! AATAACAATAACATGAAACA+AGG + chr1_3:56045112-56045131 None:intergenic 20.0%
!!! CTTCTAGTTCATTTTATTTT+TGG - chr1_3:56045206-56045225 Msa0126900:intron 20.0%
!! GTAATGTATCATAATTATCA+TGG - chr1_3:56045370-56045389 Msa0126900:intron 20.0%
!!! ATTTTGTATACAATTTACAG+AGG - chr1_3:56045845-56045864 Msa0126900:CDS 20.0%
!! GTTATAATATTTCATTTCTG+TGG - chr1_3:56046125-56046144 Msa0126900:intron 20.0%
!!! ACGTTTTCAAAAAATATTTC+CGG + chr1_3:56046346-56046365 None:intergenic 20.0%
!!! ATCATTTAACTTGAACATGT+AGG + chr1_3:56044815-56044834 None:intergenic 25.0%
!!! ACTAGTTTGTGTTATTTAAC+GGG - chr1_3:56045008-56045027 Msa0126900:CDS 25.0%
!!! CTAGTTCATTTTATTTTTGG+TGG - chr1_3:56045209-56045228 Msa0126900:intron 25.0%
! TATTGAACATTGCAATACAT+AGG + chr1_3:56045518-56045537 None:intergenic 25.0%
! TAATTAAGAATCTGCAAACA+TGG + chr1_3:56045646-56045665 None:intergenic 25.0%
!!! TAAGGATTTTCTTCTAGTTA+AGG + chr1_3:56045807-56045826 None:intergenic 25.0%
!!! ATGTACCGGTATTTTAAAAT+TGG - chr1_3:56045976-56045995 Msa0126900:CDS 25.0%
!!! TACGACCAATTTTAAAATAC+CGG + chr1_3:56045984-56046003 None:intergenic 25.0%
!! AACTTTTATCTATGATGCAT+AGG + chr1_3:56046034-56046053 None:intergenic 25.0%
!! TATCATAACTTGAAAGCATA+TGG + chr1_3:56046087-56046106 None:intergenic 25.0%
!!! CTTTCAAGTTATGATATTTC+CGG - chr1_3:56046091-56046110 Msa0126900:intron 25.0%
!! CAACCTTTTAAACAACAAAT+CGG - chr1_3:56046264-56046283 Msa0126900:intron 25.0%
!! AACCTTTTAAACAACAAATC+GGG - chr1_3:56046265-56046284 Msa0126900:intron 25.0%
!!! ATCATTTAACTTGAACATGT+AGG + chr1_3:56044815-56044834 None:intergenic 25.0%
!!! ACTAGTTTGTGTTATTTAAC+GGG - chr1_3:56045008-56045027 Msa0126900:CDS 25.0%
!!! CTAGTTCATTTTATTTTTGG+TGG - chr1_3:56045209-56045228 Msa0126900:intron 25.0%
! TATTGAACATTGCAATACAT+AGG + chr1_3:56045518-56045537 None:intergenic 25.0%
! TAATTAAGAATCTGCAAACA+TGG + chr1_3:56045646-56045665 None:intergenic 25.0%
!!! TAAGGATTTTCTTCTAGTTA+AGG + chr1_3:56045807-56045826 None:intergenic 25.0%
!!! ATGTACCGGTATTTTAAAAT+TGG - chr1_3:56045976-56045995 Msa0126900:CDS 25.0%
!!! TACGACCAATTTTAAAATAC+CGG + chr1_3:56045984-56046003 None:intergenic 25.0%
!! AACTTTTATCTATGATGCAT+AGG + chr1_3:56046034-56046053 None:intergenic 25.0%
!! TATCATAACTTGAAAGCATA+TGG + chr1_3:56046087-56046106 None:intergenic 25.0%
!!! CTTTCAAGTTATGATATTTC+CGG - chr1_3:56046091-56046110 Msa0126900:intron 25.0%
!! CAACCTTTTAAACAACAAAT+CGG - chr1_3:56046264-56046283 Msa0126900:intron 25.0%
!! AACCTTTTAAACAACAAATC+GGG - chr1_3:56046265-56046284 Msa0126900:intron 25.0%
CAGCAAAATTTATTGAAACG+CGG - chr1_3:56044869-56044888 Msa0126900:CDS 30.0%
! TATCTTTGTACGACTTTTAC+AGG + chr1_3:56044897-56044916 None:intergenic 30.0%
ACATGAAACAAGGAGTTATA+AGG + chr1_3:56045102-56045121 None:intergenic 30.0%
ATAAAAAATCACAAGGTAGC+AGG + chr1_3:56045283-56045302 None:intergenic 30.0%
!!! CTACCTTGTGATTTTTTATC+AGG - chr1_3:56045284-56045303 Msa0126900:intron 30.0%
ACACCTGATAAAAAATCACA+AGG + chr1_3:56045290-56045309 None:intergenic 30.0%
!!! GCTATTTCTAGTTTTCAAAG+AGG + chr1_3:56045415-56045434 None:intergenic 30.0%
! CATTGTAACTTGCATGTTTA+AGG - chr1_3:56045434-56045453 Msa0126900:intron 30.0%
TTGCAATGTTCAATAGTATC+AGG - chr1_3:56045523-56045542 Msa0126900:intron 30.0%
!!! TCTGGGTAAAATTTTGACTA+TGG - chr1_3:56045560-56045579 Msa0126900:intron 30.0%
TGCAGATTCTTAATTAACTC+CGG - chr1_3:56045650-56045669 Msa0126900:intron 30.0%
AACATGTCAACTTACAAAAC+CGG + chr1_3:56045672-56045691 None:intergenic 30.0%
!! ATGTTTGTTGTGCTTATGTT+TGG - chr1_3:56045687-56045706 Msa0126900:intron 30.0%
!!! TTGTGCTTATGTTTGGTTTT+TGG - chr1_3:56045694-56045713 Msa0126900:intron 30.0%
TCAACATGTTACGTAAAAAG+AGG + chr1_3:56045755-56045774 None:intergenic 30.0%
!!! AACATGTTGACCACATTTTT+TGG - chr1_3:56045765-56045784 Msa0126900:intron 30.0%
!!! ACATGTTGACCACATTTTTT+GGG - chr1_3:56045766-56045785 Msa0126900:intron 30.0%
TCAATTAAGCCCAAAAAATG+TGG + chr1_3:56045778-56045797 None:intergenic 30.0%
!!! CTCACTTTTTTTCATTGCTA+AGG + chr1_3:56045825-56045844 None:intergenic 30.0%
GAGATGCTAGTTAAGAATTA+GGG + chr1_3:56045873-56045892 None:intergenic 30.0%
TGAGATGCTAGTTAAGAATT+AGG + chr1_3:56045874-56045893 None:intergenic 30.0%
AAATTGGTCGTATTATGTAC+CGG - chr1_3:56045962-56045981 Msa0126900:CDS 30.0%
AAATTGGTCGTATTATGTAC+CGG - chr1_3:56045962-56045981 Msa0126900:CDS 30.0%
GTTAGTTCATTCTGATGATA+AGG - chr1_3:56046296-56046315 Msa0126900:intron 30.0%
! GGCTAACTTACTTGTTAATA+TGG + chr1_3:56046394-56046413 None:intergenic 30.0%
AGTTACAATACTGTTCTTCT+TGG + chr1_3:56046561-56046580 None:intergenic 30.0%
GTATTGTAACTAATAACCGT+CGG - chr1_3:56046570-56046589 Msa0126900:intron 30.0%
CAGCAAAATTTATTGAAACG+CGG - chr1_3:56044869-56044888 Msa0126900:CDS 30.0%
! TATCTTTGTACGACTTTTAC+AGG + chr1_3:56044897-56044916 None:intergenic 30.0%
ACATGAAACAAGGAGTTATA+AGG + chr1_3:56045102-56045121 None:intergenic 30.0%
ATAAAAAATCACAAGGTAGC+AGG + chr1_3:56045283-56045302 None:intergenic 30.0%
!!! CTACCTTGTGATTTTTTATC+AGG - chr1_3:56045284-56045303 Msa0126900:intron 30.0%
ACACCTGATAAAAAATCACA+AGG + chr1_3:56045290-56045309 None:intergenic 30.0%
!!! GCTATTTCTAGTTTTCAAAG+AGG + chr1_3:56045415-56045434 None:intergenic 30.0%
! CATTGTAACTTGCATGTTTA+AGG - chr1_3:56045434-56045453 Msa0126900:intron 30.0%
TTGCAATGTTCAATAGTATC+AGG - chr1_3:56045523-56045542 Msa0126900:intron 30.0%
!!! TCTGGGTAAAATTTTGACTA+TGG - chr1_3:56045560-56045579 Msa0126900:intron 30.0%
TGCAGATTCTTAATTAACTC+CGG - chr1_3:56045650-56045669 Msa0126900:intron 30.0%
AACATGTCAACTTACAAAAC+CGG + chr1_3:56045672-56045691 None:intergenic 30.0%
!! ATGTTTGTTGTGCTTATGTT+TGG - chr1_3:56045687-56045706 Msa0126900:intron 30.0%
!!! TTGTGCTTATGTTTGGTTTT+TGG - chr1_3:56045694-56045713 Msa0126900:intron 30.0%
TCAACATGTTACGTAAAAAG+AGG + chr1_3:56045755-56045774 None:intergenic 30.0%
!!! AACATGTTGACCACATTTTT+TGG - chr1_3:56045765-56045784 Msa0126900:intron 30.0%
!!! ACATGTTGACCACATTTTTT+GGG - chr1_3:56045766-56045785 Msa0126900:intron 30.0%
TCAATTAAGCCCAAAAAATG+TGG + chr1_3:56045778-56045797 None:intergenic 30.0%
!!! CTCACTTTTTTTCATTGCTA+AGG + chr1_3:56045825-56045844 None:intergenic 30.0%
GAGATGCTAGTTAAGAATTA+GGG + chr1_3:56045873-56045892 None:intergenic 30.0%
TGAGATGCTAGTTAAGAATT+AGG + chr1_3:56045874-56045893 None:intergenic 30.0%
AAATTGGTCGTATTATGTAC+CGG - chr1_3:56045962-56045981 Msa0126900:CDS 30.0%
AAATTGGTCGTATTATGTAC+CGG - chr1_3:56045962-56045981 Msa0126900:CDS 30.0%
GTTAGTTCATTCTGATGATA+AGG - chr1_3:56046296-56046315 Msa0126900:intron 30.0%
! GGCTAACTTACTTGTTAATA+TGG + chr1_3:56046394-56046413 None:intergenic 30.0%
AGTTACAATACTGTTCTTCT+TGG + chr1_3:56046561-56046580 None:intergenic 30.0%
GTATTGTAACTAATAACCGT+CGG - chr1_3:56046570-56046589 Msa0126900:intron 30.0%
AGCTCTCACAATCAAGAAAT+TGG + chr1_3:56044789-56044808 None:intergenic 35.0%
ACAAGGAGTTATAAGGTGAA+TGG + chr1_3:56045095-56045114 None:intergenic 35.0%
AAGCACAAAACTTGAAGACT+TGG + chr1_3:56045189-56045208 None:intergenic 35.0%
GAACATTGCAATACATAGGT+GGG + chr1_3:56045514-56045533 None:intergenic 35.0%
TGAACATTGCAATACATAGG+TGG + chr1_3:56045515-56045534 None:intergenic 35.0%
TAGTATCAGGAATCAGAACT+TGG - chr1_3:56045536-56045555 Msa0126900:intron 35.0%
TATCTATGATGCATAGGTAC+CGG + chr1_3:56046028-56046047 None:intergenic 35.0%
GTTGTCTCAAATTTGCATAG+AGG + chr1_3:56046185-56046204 None:intergenic 35.0%
!! CTCCCGATTTGTTGTTTAAA+AGG + chr1_3:56046270-56046289 None:intergenic 35.0%
AGTGTGTAAGTGGTTTCATT+TGG - chr1_3:56046465-56046484 Msa0126900:intron 35.0%
AAGAATCGTAGATGCTATTG+AGG + chr1_3:56046523-56046542 None:intergenic 35.0%
! ATATCTTGTTTGTGCAGAGA+TGG + chr1_3:56046654-56046673 None:intergenic 35.0%
AGCTCTCACAATCAAGAAAT+TGG + chr1_3:56044789-56044808 None:intergenic 35.0%
ACAAGGAGTTATAAGGTGAA+TGG + chr1_3:56045095-56045114 None:intergenic 35.0%
AAGCACAAAACTTGAAGACT+TGG + chr1_3:56045189-56045208 None:intergenic 35.0%
GAACATTGCAATACATAGGT+GGG + chr1_3:56045514-56045533 None:intergenic 35.0%
TGAACATTGCAATACATAGG+TGG + chr1_3:56045515-56045534 None:intergenic 35.0%
TAGTATCAGGAATCAGAACT+TGG - chr1_3:56045536-56045555 Msa0126900:intron 35.0%
TATCTATGATGCATAGGTAC+CGG + chr1_3:56046028-56046047 None:intergenic 35.0%
GTTGTCTCAAATTTGCATAG+AGG + chr1_3:56046185-56046204 None:intergenic 35.0%
!! CTCCCGATTTGTTGTTTAAA+AGG + chr1_3:56046270-56046289 None:intergenic 35.0%
AGTGTGTAAGTGGTTTCATT+TGG - chr1_3:56046465-56046484 Msa0126900:intron 35.0%
AAGAATCGTAGATGCTATTG+AGG + chr1_3:56046523-56046542 None:intergenic 35.0%
! ATATCTTGTTTGTGCAGAGA+TGG + chr1_3:56046654-56046673 None:intergenic 35.0%
! TTGGTTTGAAGAAGGAGACA+CGG + chr1_3:56045072-56045091 None:intergenic 40.0%
!! GTGAATGGTTGGTTTGAAGA+AGG + chr1_3:56045080-56045099 None:intergenic 40.0%
GGAGTTATAAGGTGAATGGT+TGG + chr1_3:56045091-56045110 None:intergenic 40.0%
AGCTTTCCTGACATTGACAA+AGG + chr1_3:56045477-56045496 None:intergenic 40.0%
! CAATGTCAGGAAAGCTTGTT+TGG - chr1_3:56045481-56045500 Msa0126900:intron 40.0%
! TCAGGAAAGCTTGTTTGGAT+GGG - chr1_3:56045486-56045505 Msa0126900:intron 40.0%
GACATACATGTCTACATTGC+AGG - chr1_3:56045588-56045607 Msa0126900:intron 40.0%
! GTTGTTGTTACTCAGTCACT+TGG + chr1_3:56046163-56046182 None:intergenic 40.0%
CTTACACACTGTTGATCCAA+GGG + chr1_3:56046455-56046474 None:intergenic 40.0%
ACTTACACACTGTTGATCCA+AGG + chr1_3:56046456-56046475 None:intergenic 40.0%
TTGGATCAACAGTGTGTAAG+TGG - chr1_3:56046455-56046474 Msa0126900:intron 40.0%
! TTGGTTTGAAGAAGGAGACA+CGG + chr1_3:56045072-56045091 None:intergenic 40.0%
!! GTGAATGGTTGGTTTGAAGA+AGG + chr1_3:56045080-56045099 None:intergenic 40.0%
GGAGTTATAAGGTGAATGGT+TGG + chr1_3:56045091-56045110 None:intergenic 40.0%
AGCTTTCCTGACATTGACAA+AGG + chr1_3:56045477-56045496 None:intergenic 40.0%
! CAATGTCAGGAAAGCTTGTT+TGG - chr1_3:56045481-56045500 Msa0126900:intron 40.0%
! TCAGGAAAGCTTGTTTGGAT+GGG - chr1_3:56045486-56045505 Msa0126900:intron 40.0%
GACATACATGTCTACATTGC+AGG - chr1_3:56045588-56045607 Msa0126900:intron 40.0%
! GTTGTTGTTACTCAGTCACT+TGG + chr1_3:56046163-56046182 None:intergenic 40.0%
CTTACACACTGTTGATCCAA+GGG + chr1_3:56046455-56046474 None:intergenic 40.0%
ACTTACACACTGTTGATCCA+AGG + chr1_3:56046456-56046475 None:intergenic 40.0%
TTGGATCAACAGTGTGTAAG+TGG - chr1_3:56046455-56046474 Msa0126900:intron 40.0%
!! ACGGGGTTGATGTGATAAAG+CGG + chr1_3:56045053-56045072 None:intergenic 45.0%
TGGTTTGAAGAAGGAGACAC+GGG + chr1_3:56045071-56045090 None:intergenic 45.0%
ACTGTGCCTTTGTCAATGTC+AGG - chr1_3:56045468-56045487 Msa0126900:intron 45.0%
! GTCAGGAAAGCTTGTTTGGA+TGG - chr1_3:56045485-56045504 Msa0126900:intron 45.0%
! AGGAATCAGAACTTGGCTCT+GGG - chr1_3:56045543-56045562 Msa0126900:intron 45.0%
! ATGTACCGGTACCTACATAC+CGG - chr1_3:56046006-56046025 Msa0126900:intron 45.0%
!! ATGCATAGGTACCGGTATGT+AGG + chr1_3:56046020-56046039 None:intergenic 45.0%
TCTTTGTGCGCATCAAACAC+CGG - chr1_3:56046324-56046343 Msa0126900:intron 45.0%
!!! AAGGGATTGGTTTTGCTGGA+TGG + chr1_3:56046437-56046456 None:intergenic 45.0%
ATCCAGCAAAACCAATCCCT+TGG - chr1_3:56046436-56046455 Msa0126900:intron 45.0%
!!! ATCCAAGGGATTGGTTTTGC+TGG + chr1_3:56046441-56046460 None:intergenic 45.0%
ACACTGTTGATCCAAGGGAT+TGG + chr1_3:56046450-56046469 None:intergenic 45.0%
CTGGCTGCTATGGTTAACAA+AGG + chr1_3:56046498-56046517 None:intergenic 45.0%
TGTAACTAATAACCGTCGGC+TGG - chr1_3:56046574-56046593 Msa0126900:intron 45.0%
! TTTGTGCAGAGATGGATTCG+TGG + chr1_3:56046646-56046665 None:intergenic 45.0%
!! ACGGGGTTGATGTGATAAAG+CGG + chr1_3:56045053-56045072 None:intergenic 45.0%
TGGTTTGAAGAAGGAGACAC+GGG + chr1_3:56045071-56045090 None:intergenic 45.0%
ACTGTGCCTTTGTCAATGTC+AGG - chr1_3:56045468-56045487 Msa0126900:intron 45.0%
! GTCAGGAAAGCTTGTTTGGA+TGG - chr1_3:56045485-56045504 Msa0126900:intron 45.0%
! AGGAATCAGAACTTGGCTCT+GGG - chr1_3:56045543-56045562 Msa0126900:intron 45.0%
! ATGTACCGGTACCTACATAC+CGG - chr1_3:56046006-56046025 Msa0126900:intron 45.0%
!! ATGCATAGGTACCGGTATGT+AGG + chr1_3:56046020-56046039 None:intergenic 45.0%
TCTTTGTGCGCATCAAACAC+CGG - chr1_3:56046324-56046343 Msa0126900:intron 45.0%
!!! AAGGGATTGGTTTTGCTGGA+TGG + chr1_3:56046437-56046456 None:intergenic 45.0%
ATCCAGCAAAACCAATCCCT+TGG - chr1_3:56046436-56046455 Msa0126900:intron 45.0%
!!! ATCCAAGGGATTGGTTTTGC+TGG + chr1_3:56046441-56046460 None:intergenic 45.0%
ACACTGTTGATCCAAGGGAT+TGG + chr1_3:56046450-56046469 None:intergenic 45.0%
CTGGCTGCTATGGTTAACAA+AGG + chr1_3:56046498-56046517 None:intergenic 45.0%
TGTAACTAATAACCGTCGGC+TGG - chr1_3:56046574-56046593 Msa0126900:intron 45.0%
! TTTGTGCAGAGATGGATTCG+TGG + chr1_3:56046646-56046665 None:intergenic 45.0%
GGTTTGAAGAAGGAGACACG+GGG + chr1_3:56045070-56045089 None:intergenic 50.0%
CAGGAATCAGAACTTGGCTC+TGG - chr1_3:56045542-56045561 Msa0126900:intron 50.0%
!! AGGTACCGGTATGTAGGTAC+CGG + chr1_3:56046014-56046033 None:intergenic 50.0%
!! TATTGAGGTGCTGGCTGCTA+TGG + chr1_3:56046508-56046527 None:intergenic 50.0%
CGTAGATGCTATTGAGGTGC+TGG + chr1_3:56046517-56046536 None:intergenic 50.0%
! CAGAGATGGATTCGTGGATC+AGG + chr1_3:56046640-56046659 None:intergenic 50.0%
GGTTTGAAGAAGGAGACACG+GGG + chr1_3:56045070-56045089 None:intergenic 50.0%
CAGGAATCAGAACTTGGCTC+TGG - chr1_3:56045542-56045561 Msa0126900:intron 50.0%
!! AGGTACCGGTATGTAGGTAC+CGG + chr1_3:56046014-56046033 None:intergenic 50.0%
!! TATTGAGGTGCTGGCTGCTA+TGG + chr1_3:56046508-56046527 None:intergenic 50.0%
CGTAGATGCTATTGAGGTGC+TGG + chr1_3:56046517-56046536 None:intergenic 50.0%
! CAGAGATGGATTCGTGGATC+AGG + chr1_3:56046640-56046659 None:intergenic 50.0%
TGGATGGCGATATGACGCGA+TGG + chr1_3:56046421-56046440 None:intergenic 55.0%
!! GAGTCAAAAGTGCCAGCCGA+CGG + chr1_3:56046589-56046608 None:intergenic 55.0%
TGGATGGCGATATGACGCGA+TGG + chr1_3:56046421-56046440 None:intergenic 55.0%
!! GAGTCAAAAGTGCCAGCCGA+CGG + chr1_3:56046589-56046608 None:intergenic 55.0%
GCGATATGACGCGATGGAGC+TGG + chr1_3:56046415-56046434 None:intergenic 60.0%
GCGATATGACGCGATGGAGC+TGG + chr1_3:56046415-56046434 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56044775 56046679 56044775 ID=Msa0126900;Name=Msa0126900
chr1_3 mRNA 56044775 56046679 56044775 ID=Msa0126900-mRNA-1;Parent=Msa0126900;Name=Msa0126900-mRNA-1;_AED=0.90;_eAED=1.00;_QI=0|0|0|0.25|1|1|4|0|145
chr1_3 exon 56046676 56046679 56046676 ID=Msa0126900-mRNA-1:exon:17586;Parent=Msa0126900-mRNA-1
chr1_3 exon 56046306 56046313 56046306 ID=Msa0126900-mRNA-1:exon:17585;Parent=Msa0126900-mRNA-1
chr1_3 exon 56045845 56045998 56045845 ID=Msa0126900-mRNA-1:exon:17584;Parent=Msa0126900-mRNA-1
chr1_3 exon 56044775 56045046 56044775 ID=Msa0126900-mRNA-1:exon:17583;Parent=Msa0126900-mRNA-1
chr1_3 CDS 56046676 56046679 56046676 ID=Msa0126900-mRNA-1:cds;Parent=Msa0126900-mRNA-1
chr1_3 CDS 56046306 56046313 56046306 ID=Msa0126900-mRNA-1:cds;Parent=Msa0126900-mRNA-1
chr1_3 CDS 56045845 56045998 56045845 ID=Msa0126900-mRNA-1:cds;Parent=Msa0126900-mRNA-1
chr1_3 CDS 56044775 56045046 56044775 ID=Msa0126900-mRNA-1:cds;Parent=Msa0126900-mRNA-1
Gene Sequence

>Msa0126900

ATGGCGACTTCTGTTGCTGATTTTACTGTGCCTTTGTCAATGTCAGGAAAGCTTGTTTGGATGGGCACCCACCTATGTATTGCAATGTTCAATAGTATCAGGAATCAGAACTTGGCTCTGGGTAAAATTTTGACTATGGAAGTTGACATACATGTCTACATTGCAGTTAGCCAGCTCCATCGCGTCATATCGCCATCCAGCAAAACCAATCCCTTGGATCAACAGTGTGTAAGTGGTTTCATTTGGCAGACATCCTTTGTTAACCATAGCAGCCAGCACCTCAATAGCATCTACGATTCTTTGCAATTTGCACAATCCAAGAAGAACAGTATTGTAACTAATAACCGTCGGCTGGCACTTTTGACTCTCAAACATATCAATCAACAACTCAATTGCCTGATCCACGAATCCATCTCTGCACAAACAAGATATAAGTGA

Protein sequence

>Msa0126900

MATSVADFTVPLSMSGKLVWMGTHLCIAMFNSIRNQNLALGKILTMEVDIHVYIAVSQLHRVISPSSKTNPLDQQCVSGFIWQTSFVNHSSQHLNSIYDSLQFAQSKKNSIVTNNRRLALLTLKHINQQLNCLIHESISAQTRYK*