Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043170 | XP_013470130.1 | 94.180 | 189 | 7 | 1 | 6 | 194 | 32 | 216 | 4.00e-121 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0043170 | -0.833094 | 6.496267e-56 | -8.615850e-47 |
| Msa0004060 | Msa0043170 | 0.808322 | 3.279040e-50 | -8.615850e-47 |
| Msa0006290 | Msa0043170 | 0.815373 | 9.557099e-52 | -8.615850e-47 |
| Msa0006880 | Msa0043170 | 0.816753 | 4.700960e-52 | -8.615850e-47 |
| Msa0015140 | Msa0043170 | 0.812885 | 3.385094e-51 | -8.615850e-47 |
| Msa0015680 | Msa0043170 | 0.820788 | 5.700403e-53 | -8.615850e-47 |
| Msa0041970 | Msa0043170 | 0.800926 | 1.145868e-48 | -8.615850e-47 |
| Msa0043170 | Msa0054930 | 0.814566 | 1.443201e-51 | -8.615850e-47 |
| Msa0043170 | Msa0055150 | 0.820651 | 6.129951e-53 | -8.615850e-47 |
| Msa0043170 | Msa0057140 | 0.827438 | 1.564611e-54 | -8.615850e-47 |
| Msa0043170 | Msa0069310 | 0.803509 | 3.369656e-49 | -8.615850e-47 |
| Msa0043170 | Msa0081230 | 0.805359 | 1.386424e-49 | -8.615850e-47 |
| Msa0043170 | Msa0085360 | -0.801698 | 7.962942e-49 | -8.615850e-47 |
| Msa0043170 | Msa0095010 | 0.808092 | 3.670717e-50 | -8.615850e-47 |
| Msa0043170 | Msa0097990 | 0.822984 | 1.767591e-53 | -8.615850e-47 |
| Msa0043170 | Msa0100300 | 0.813187 | 2.906307e-51 | -8.615850e-47 |
| Msa0043170 | Msa0131450 | 0.815231 | 1.027734e-51 | -8.615850e-47 |
| Msa0043170 | Msa0136390 | 0.823599 | 1.270069e-53 | -8.615850e-47 |
| Msa0043170 | Msa0137040 | 0.854555 | 1.138769e-61 | -8.615850e-47 |
| Msa0043170 | Msa0140520 | -0.816978 | 4.184548e-52 | -8.615850e-47 |
| Msa0043170 | Msa0148120 | 0.801362 | 9.334305e-49 | -8.615850e-47 |
| Msa0043170 | Msa0177270 | 0.818678 | 1.729016e-52 | -8.615850e-47 |
| Msa0043170 | Msa0177700 | -0.801053 | 1.079294e-48 | -8.615850e-47 |
| Msa0043170 | Msa0178990 | 0.831534 | 1.581218e-55 | -8.615850e-47 |
| Msa0043170 | Msa0182280 | 0.949802 | 6.074103e-108 | -8.615850e-47 |
| Msa0043170 | Msa0183460 | 0.809431 | 1.898414e-50 | -8.615850e-47 |
| Msa0043170 | Msa0188680 | -0.805178 | 1.513148e-49 | -8.615850e-47 |
| Msa0043170 | Msa0223290 | 0.808774 | 2.625510e-50 | -8.615850e-47 |
| Msa0043170 | Msa0226470 | 0.828352 | 9.428224e-55 | -8.615850e-47 |
| Msa0043170 | Msa0239490 | 0.813968 | 1.956753e-51 | -8.615850e-47 |
| Msa0043170 | Msa0239940 | 0.816193 | 6.272542e-52 | -8.615850e-47 |
| Msa0043170 | Msa0242680 | 0.800883 | 1.169179e-48 | -8.615850e-47 |
| Msa0043170 | Msa0270220 | -0.807053 | 6.097592e-50 | -8.615850e-47 |
| Msa0043170 | Msa0275400 | -0.809041 | 2.301904e-50 | -8.615850e-47 |
| Msa0043170 | Msa0288730 | 0.824045 | 9.984862e-54 | -8.615850e-47 |
| Msa0043170 | Msa0291520 | 0.815343 | 9.704314e-52 | -8.615850e-47 |
| Msa0043170 | Msa0302650 | 0.815143 | 1.075269e-51 | -8.615850e-47 |
| Msa0043170 | Msa0302980 | 0.800276 | 1.554974e-48 | -8.615850e-47 |
| Msa0043170 | Msa0304330 | 0.801332 | 9.466605e-49 | -8.615850e-47 |
| Msa0043170 | Msa0307830 | -0.800124 | 1.669740e-48 | -8.615850e-47 |
| Msa0043170 | Msa0308200 | 0.801330 | 9.472228e-49 | -8.615850e-47 |
| Msa0043170 | Msa0308220 | 0.821405 | 4.108986e-53 | -8.615850e-47 |
| Msa0043170 | Msa0310410 | 0.800788 | 1.222994e-48 | -8.615850e-47 |
| Msa0043170 | Msa0320610 | 0.812090 | 5.049654e-51 | -8.615850e-47 |
| Msa0043170 | Msa0328210 | 0.801500 | 8.743785e-49 | -8.615850e-47 |
| Msa0043170 | Msa0419520 | 0.820065 | 8.351313e-53 | -8.615850e-47 |
| Msa0043170 | Msa0419640 | -0.821017 | 5.048509e-53 | -8.615850e-47 |
| Msa0043170 | Msa0465550 | 0.826032 | 3.388225e-54 | -8.615850e-47 |
| Msa0043170 | Msa0469910 | -0.821402 | 4.114491e-53 | -8.615850e-47 |
| Msa0043170 | Msa0493920 | 0.809348 | 1.978234e-50 | -8.615850e-47 |
| Msa0043170 | Msa0511490 | 0.818996 | 1.464447e-52 | -8.615850e-47 |
| Msa0043170 | Msa0513440 | 0.807231 | 5.591855e-50 | -8.615850e-47 |
| Msa0043170 | Msa0542160 | 0.803658 | 3.138372e-49 | -8.615850e-47 |
| Msa0043170 | Msa0547400 | 0.804259 | 2.354013e-49 | -8.615850e-47 |
| Msa0043170 | Msa0556790 | 0.807256 | 5.523560e-50 | -8.615850e-47 |
| Msa0043170 | Msa0562300 | -0.805504 | 1.292801e-49 | -8.615850e-47 |
| Msa0043170 | Msa0565620 | -0.817659 | 2.939718e-52 | -8.615850e-47 |
| Msa0043170 | Msa0571700 | 0.806663 | 7.375345e-50 | -8.615850e-47 |
| Msa0043170 | Msa0576100 | -0.800443 | 1.438118e-48 | -8.615850e-47 |
| Msa0043170 | Msa0586850 | 0.812851 | 3.442587e-51 | -8.615850e-47 |
| Msa0043170 | Msa0602120 | 0.805766 | 1.139385e-49 | -8.615850e-47 |
| Msa0043170 | Msa0607510 | 0.800383 | 1.478602e-48 | -8.615850e-47 |
| Msa0043170 | Msa0609000 | 0.801385 | 9.233403e-49 | -8.615850e-47 |
| Msa0043170 | Msa0619070 | 0.803818 | 2.906948e-49 | -8.615850e-47 |
| Msa0043170 | Msa0619920 | 0.808833 | 2.550096e-50 | -8.615850e-47 |
| Msa0043170 | Msa0643250 | 0.814501 | 1.491815e-51 | -8.615850e-47 |
| Msa0043170 | Msa0652300 | 0.801581 | 8.415856e-49 | -8.615850e-47 |
| Msa0043170 | Msa0669850 | 0.812154 | 4.890402e-51 | -8.615850e-47 |
| Msa0043170 | Msa0670270 | 0.805413 | 1.351379e-49 | -8.615850e-47 |
| Msa0043170 | Msa0694840 | 0.809135 | 2.197130e-50 | -8.615850e-47 |
| Msa0043170 | Msa0726830 | 0.804710 | 1.895714e-49 | -8.615850e-47 |
| Msa0043170 | Msa0726860 | 0.802091 | 6.613144e-49 | -8.615850e-47 |
| Msa0043170 | Msa0733480 | 0.802313 | 5.952758e-49 | -8.615850e-47 |
| Msa0043170 | Msa0754720 | -0.801327 | 9.489116e-49 | -8.615850e-47 |
| Msa0043170 | Msa0788710 | 0.805502 | 1.294374e-49 | -8.615850e-47 |
| Msa0043170 | Msa0790390 | -0.817688 | 2.895824e-52 | -8.615850e-47 |
| Msa0043170 | Msa0790850 | 0.803725 | 3.039856e-49 | -8.615850e-47 |
| Msa0043170 | Msa0895310 | 0.800458 | 1.427958e-48 | -8.615850e-47 |
| Msa0043170 | Msa0966720 | -0.810627 | 1.049461e-50 | -8.615850e-47 |
| Msa0043170 | Msa0976330 | 0.809199 | 2.129064e-50 | -8.615850e-47 |
| Msa0043170 | Msa1040800 | 0.801856 | 7.391913e-49 | -8.615850e-47 |
| Msa0043170 | Msa1040890 | 0.814095 | 1.834189e-51 | -8.615850e-47 |
| Msa0043170 | Msa1069660 | -0.816358 | 5.761673e-52 | -8.615850e-47 |
| Msa0043170 | Msa1089840 | 0.816561 | 5.189833e-52 | -8.615850e-47 |
| Msa0043170 | Msa1093330 | 0.828237 | 1.004910e-54 | -8.615850e-47 |
| Msa0043170 | Msa1126120 | -0.827928 | 1.193231e-54 | -8.615850e-47 |
| Msa0043170 | Msa1130210 | -0.827874 | 1.229565e-54 | -8.615850e-47 |
| Msa0043170 | Msa1171870 | 0.805403 | 1.357593e-49 | -8.615850e-47 |
| Msa0043170 | Msa1179980 | 0.806761 | 7.031104e-50 | -8.615850e-47 |
| Msa0043170 | Msa1246530 | -0.820036 | 8.479784e-53 | -8.615850e-47 |
| Msa0043170 | Msa1255040 | -0.807155 | 5.801786e-50 | -8.615850e-47 |
| Msa0043170 | Msa1269300 | 0.817619 | 3.001882e-52 | -8.615850e-47 |
| Msa0043170 | Msa1270690 | 0.800854 | 1.185213e-48 | -8.615850e-47 |
| Msa0043170 | Msa1280620 | 0.806174 | 9.349355e-50 | -8.615850e-47 |
| Msa0043170 | Msa1294960 | 0.815415 | 9.355816e-52 | -8.615850e-47 |
| Msa0043170 | Msa1306430 | 0.808679 | 2.751563e-50 | -8.615850e-47 |
| Msa0043170 | Msa1359390 | 0.822936 | 1.814123e-53 | -8.615850e-47 |
| Msa0043170 | Msa1365860 | 0.803070 | 4.154789e-49 | -8.615850e-47 |
| Msa0043170 | Msa1371090 | 0.803271 | 3.774432e-49 | -8.615850e-47 |
| Msa0043170 | Msa1403580 | -0.816834 | 4.506917e-52 | -8.615850e-47 |
| Msa0043170 | Msa1439960 | 0.807076 | 6.030596e-50 | -8.615850e-47 |
| Msa0043170 | Msa1442220 | -0.809939 | 1.476714e-50 | -8.615850e-47 |
| Msa0043170 | Msa1443290 | -0.802109 | 6.557383e-49 | -8.615850e-47 |
| Msa0043170 | Msa1452470 | 0.831437 | 1.670590e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043170 | MtrunA17_Chr1g0209081 | 94.180 | 189 | 7 | 1 | 6 | 194 | 32 | 216 | 3.68e-125 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043170 | AT1G68185.1 | 43.684 | 190 | 98 | 4 | 6 | 194 | 34 | 215 | 2.60e-39 | 134 |
| Msa0043170 | AT1G68185.3 | 43.684 | 190 | 98 | 4 | 6 | 194 | 34 | 215 | 2.60e-39 | 134 |
| Msa0043170 | AT1G68185.2 | 43.684 | 190 | 98 | 4 | 6 | 194 | 80 | 261 | 1.46e-38 | 133 |
Find 60 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGCTGAGATTGACATTT+TGG | 0.125187 | 1_1:-74223688 | Msa0043170:three_prime_UTR |
| ACCCTCATGTTATACAAATT+TGG | 0.150209 | 1_1:+74223295 | None:intergenic |
| AATAATTAATGATTATATTT+TGG | 0.153894 | 1_1:+74223397 | None:intergenic |
| GTATAACATGAGGGTTATTT+AGG | 0.223417 | 1_1:-74223287 | Msa0043170:three_prime_UTR |
| CCTCCTCATCAGTCTTCTTA+TGG | 0.228908 | 1_1:+74225647 | None:intergenic |
| GAATTCTTCTTTCTCTTCTT+AGG | 0.234591 | 1_1:+74225879 | None:intergenic |
| AAAGCAGATTCGGATGTTTA+TGG | 0.264643 | 1_1:-74224961 | Msa0043170:intron |
| ATGTGAAGTCAAGTTGATTT+AGG | 0.273644 | 1_1:-74224543 | Msa0043170:intron |
| CAAATTGTGTTGTCATTTGA+TGG | 0.307014 | 1_1:-74224634 | Msa0043170:CDS |
| GCAGCTGTTGGCCCTCTCTA+AGG | 0.327070 | 1_1:-74223361 | Msa0043170:three_prime_UTR |
| TATCATTATCTTCCATTTCA+AGG | 0.332434 | 1_1:+74224578 | None:intergenic |
| ATGATGTTGTGCATTATGTT+TGG | 0.333046 | 1_1:-74223472 | Msa0043170:three_prime_UTR |
| AAAATATGTACTGTACAATT+AGG | 0.339197 | 1_1:+74223580 | None:intergenic |
| CACGGAAGGTTGCAATGAAT+TGG | 0.349044 | 1_1:+74225061 | None:intergenic |
| TGCACAACATCATCAATAGA+AGG | 0.365604 | 1_1:+74223482 | None:intergenic |
| AGTCTTCTTATGGGCCTTAC+CGG | 0.377421 | 1_1:+74225657 | None:intergenic |
| GTAGAAGTTCTTTCGGTGTA+TGG | 0.379855 | 1_1:-74223530 | Msa0043170:three_prime_UTR |
| CTCCTCATCAGTCTTCTTAT+GGG | 0.387413 | 1_1:+74225648 | None:intergenic |
| AACCCCTGCCAGCCTTGAAA+TGG | 0.394451 | 1_1:-74224590 | Msa0043170:CDS |
| TGATGTTGTGCATTATGTTT+GGG | 0.409527 | 1_1:-74223471 | Msa0043170:three_prime_UTR |
| ATTCAACTTTGAAGAATTTG+AGG | 0.439470 | 1_1:-74225624 | Msa0043170:intron |
| AGGGTTATTTAGGATACAAA+TGG | 0.446647 | 1_1:-74223277 | Msa0043170:three_prime_UTR |
| TTTGGGGTTTAGGTTGAGAA+TGG | 0.451301 | 1_1:-74225757 | Msa0043170:intron |
| CTGATGCAGATCTTCGATCA+TGG | 0.453261 | 1_1:-74223708 | Msa0043170:intron |
| TCTTCCATTTCAAGGCTGGC+AGG | 0.456162 | 1_1:+74224586 | None:intergenic |
| AGGATGAAACAAAGCAGATT+CGG | 0.459454 | 1_1:-74224971 | Msa0043170:CDS |
| TTCCATTTCAAGGCTGGCAG+GGG | 0.465493 | 1_1:+74224588 | None:intergenic |
| GCCTTACCGGTGACCCTTGG+TGG | 0.466237 | 1_1:+74225670 | None:intergenic |
| TGGGCCTTACCGGTGACCCT+TGG | 0.476360 | 1_1:+74225667 | None:intergenic |
| CAATTCATTGCAACCTTCCG+TGG | 0.476932 | 1_1:-74225060 | Msa0043170:CDS |
| CCACAACAGCTGCCGTGAAA+AGG | 0.484191 | 1_1:+74223332 | None:intergenic |
| ATTATCTTCCATTTCAAGGC+TGG | 0.485099 | 1_1:+74224582 | None:intergenic |
| GCCACCAAGGGTCACCGGTA+AGG | 0.490738 | 1_1:-74225671 | Msa0043170:CDS |
| CTTCCATTTCAAGGCTGGCA+GGG | 0.494291 | 1_1:+74224587 | None:intergenic |
| TTATTTATGCTAGCAGCTGT+TGG | 0.504433 | 1_1:-74223373 | Msa0043170:three_prime_UTR |
| TTGGGGTTTAGGTTGAGAAT+GGG | 0.505216 | 1_1:-74225756 | Msa0043170:intron |
| GTTCTTTCGGTGTATGGCAT+AGG | 0.505606 | 1_1:-74223524 | Msa0043170:three_prime_UTR |
| AGAATCTTTGCTCGTTCAGA+AGG | 0.520871 | 1_1:+74225011 | None:intergenic |
| TTTGTATAGATTGAAGAAGC+AGG | 0.529052 | 1_1:-74225156 | Msa0043170:intron |
| TCACTTACGTCGTCCACGGA+AGG | 0.541348 | 1_1:+74225047 | None:intergenic |
| CCGGTGACCCTTGGTGGCGA+AGG | 0.548861 | 1_1:+74225676 | None:intergenic |
| TGTAGGATGACCAGTTTGAA+AGG | 0.550107 | 1_1:-74224699 | Msa0043170:intron |
| AACCAAATTTGTATAACATG+AGG | 0.554290 | 1_1:-74223297 | Msa0043170:three_prime_UTR |
| CCTTCGCCACCAAGGGTCAC+CGG | 0.569098 | 1_1:-74225676 | Msa0043170:CDS |
| TGAGAATGGGAAGAATACTA+AGG | 0.569816 | 1_1:-74225743 | Msa0043170:CDS |
| ACCAAATTTGTATAACATGA+GGG | 0.577504 | 1_1:-74223296 | Msa0043170:three_prime_UTR |
| TTGGTTACCTTCGCCACCAA+GGG | 0.579619 | 1_1:-74225683 | Msa0043170:CDS |
| GCACAACATCATCAATAGAA+GGG | 0.585781 | 1_1:+74223483 | None:intergenic |
| AAAAGGTTACAGCCTTAGAG+AGG | 0.611672 | 1_1:+74223349 | None:intergenic |
| GAATGGGAAGAATACTAAGG+TGG | 0.613980 | 1_1:-74225740 | Msa0043170:CDS |
| TGGACCTCGAGGATGATGAT+TGG | 0.623297 | 1_1:-74225702 | Msa0043170:CDS |
| TCTCATCTCTGTTCAAGACA+AGG | 0.626807 | 1_1:-74224991 | Msa0043170:CDS |
| CCATAAGAAGACTGATGAGG+AGG | 0.627181 | 1_1:-74225647 | Msa0043170:CDS |
| ATTGGTTACCTTCGCCACCA+AGG | 0.629138 | 1_1:-74225684 | Msa0043170:CDS |
| AAAGGTTACAGCCTTAGAGA+GGG | 0.685304 | 1_1:+74223350 | None:intergenic |
| TAAGGTGGAAACAGTGAATG+TGG | 0.687527 | 1_1:-74225725 | Msa0043170:CDS |
| GGCCCATAAGAAGACTGATG+AGG | 0.692280 | 1_1:-74225650 | Msa0043170:CDS |
| AGTGAATGTGGTGGACCTCG+AGG | 0.707436 | 1_1:-74225713 | Msa0043170:CDS |
| GGTGGAAACAGTGAATGTGG+TGG | 0.711849 | 1_1:-74225722 | Msa0043170:CDS |
| GTAACCAATCATCATCCTCG+AGG | 0.759157 | 1_1:+74225698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAAATTTTGATAATGTTT+TGG | - | chr1_1:74223387-74223406 | Msa0043170:three_prime_UTR | 15.0% |
| !!! | GTAAATTTTGATAATGTTTT+GGG | - | chr1_1:74223388-74223407 | Msa0043170:three_prime_UTR | 15.0% |
| !!! | TAAATTTTGATAATGTTTTG+GGG | - | chr1_1:74223389-74223408 | Msa0043170:three_prime_UTR | 15.0% |
| !! | CTGATAAAGAAAATAAAAAA+AGG | + | chr1_1:74224360-74224379 | None:intergenic | 15.0% |
| !!! | ATTTTAAAGTAAGAAAACTA+AGG | - | chr1_1:74224812-74224831 | Msa0043170:intron | 15.0% |
| !! | AAATTGAAAATATTATCTTC+TGG | + | chr1_1:74224919-74224938 | None:intergenic | 15.0% |
| !!! | ATTTTCAATTTTTTCAACAA+TGG | - | chr1_1:74224928-74224947 | Msa0043170:intron | 15.0% |
| !! | CAAAACAAAAAACACAAATT+TGG | + | chr1_1:74223340-74223359 | None:intergenic | 20.0% |
| !! | AATGGCAAAAAACAAAAATT+TGG | + | chr1_1:74223601-74223620 | None:intergenic | 20.0% |
| !! | TTAAAATAACATGCTCATAA+AGG | - | chr1_1:74223781-74223800 | Msa0043170:intron | 20.0% |
| !! | TAAAATAACATGCTCATAAA+GGG | - | chr1_1:74223782-74223801 | Msa0043170:intron | 20.0% |
| !!! | TTGTATAAAAAAAGTGTGTT+GGG | - | chr1_1:74223830-74223849 | Msa0043170:intron | 20.0% |
| !! | ATGAGTAGAATAACTTATAT+TGG | + | chr1_1:74223915-74223934 | None:intergenic | 20.0% |
| !! | TAAAGAAAATAAAAAAAGGC+AGG | + | chr1_1:74224356-74224375 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTATAATAGTGAC+CGG | + | chr1_1:74225085-74225104 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATAATAGTTAC+CGG | - | chr1_1:74225194-74225213 | Msa0043170:intron | 20.0% |
| !!! | GCTTTTTTATCAATTTTTAC+TGG | - | chr1_1:74225525-74225544 | Msa0043170:intron | 20.0% |
| !! | AAAATATGTACTGTACAATT+AGG | + | chr1_1:74225585-74225604 | None:intergenic | 20.0% |
| !!! | TGTGTTTTTTGTTTTGTACA+AGG | - | chr1_1:74223344-74223363 | Msa0043170:three_prime_UTR | 25.0% |
| !! | ATTCAACTTTGAAGAATTTG+AGG | - | chr1_1:74223538-74223557 | Msa0043170:three_prime_UTR | 25.0% |
| ! | TAAGTAAACAAACAATGCAA+TGG | + | chr1_1:74223619-74223638 | None:intergenic | 25.0% |
| !!! | TGTAGCAATGTTTTAAAAAC+CGG | + | chr1_1:74223747-74223766 | None:intergenic | 25.0% |
| !! | CTTGTATAAAAAAAGTGTGT+TGG | - | chr1_1:74223829-74223848 | Msa0043170:intron | 25.0% |
| ! | TAACTAATTAAGCCTATTCT+TGG | - | chr1_1:74223877-74223896 | Msa0043170:intron | 25.0% |
| ! | ACATCTTATAAGAAACTGTA+TGG | + | chr1_1:74223980-74223999 | None:intergenic | 25.0% |
| ! | TGTTGATGTTCTTAATATTG+TGG | - | chr1_1:74224255-74224274 | Msa0043170:intron | 25.0% |
| !!! | TAGTTGTAGTTTGTTTGAAA+TGG | - | chr1_1:74224306-74224325 | Msa0043170:intron | 25.0% |
| !! | AGTTTGTTTGAAATGGTATA+AGG | - | chr1_1:74224313-74224332 | Msa0043170:intron | 25.0% |
| !! | GTTTGTTTGAAATGGTATAA+GGG | - | chr1_1:74224314-74224333 | Msa0043170:intron | 25.0% |
| !!! | TTTTGATAATCCTTTCAAAC+TGG | + | chr1_1:74224476-74224495 | None:intergenic | 25.0% |
| ! | TATCATTATCTTCCATTTCA+AGG | + | chr1_1:74224587-74224606 | None:intergenic | 25.0% |
| ! | TTGAATACAAATTCATCATC+AGG | + | chr1_1:74224756-74224775 | None:intergenic | 25.0% |
| ! | TGAATTTGTATTCAAGTGTA+TGG | - | chr1_1:74224761-74224780 | Msa0043170:intron | 25.0% |
| ! | AATGATGAATGCTCATATTT+AGG | - | chr1_1:74224974-74224993 | Msa0043170:CDS | 25.0% |
| ! | ATGATGAATGCTCATATTTA+GGG | - | chr1_1:74224975-74224994 | Msa0043170:CDS | 25.0% |
| ! | TGTGGTAAATATCATTTGTA+AGG | - | chr1_1:74224998-74225017 | Msa0043170:CDS | 25.0% |
| !!! | GTCTTCTATATTTTAAGAAC+TGG | + | chr1_1:74225563-74225582 | None:intergenic | 25.0% |
| !!! | TTGTACAGTACATATTTTGA+CGG | - | chr1_1:74225587-74225606 | Msa0043170:intron | 25.0% |
| !!! | TTTTTAGGTAGAAGTTCTTT+CGG | - | chr1_1:74225625-74225644 | Msa0043170:CDS | 25.0% |
| !! | AACTCTATAGAATTTTGTCA+AGG | - | chr1_1:74225723-74225742 | Msa0043170:CDS | 25.0% |
| ! | AACCAAATTTGTATAACATG+AGG | - | chr1_1:74225865-74225884 | Msa0043170:CDS | 25.0% |
| ! | ACCAAATTTGTATAACATGA+GGG | - | chr1_1:74225866-74225885 | Msa0043170:CDS | 25.0% |
| GAATTCTTCTTTCTCTTCTT+AGG | + | chr1_1:74223286-74223305 | None:intergenic | 30.0% | |
| ! | TCAACATGTAGTGAGTATTT+TGG | - | chr1_1:74223312-74223331 | Msa0043170:three_prime_UTR | 30.0% |
| !! | TTGTTTTGTACAAGGATGTT+TGG | - | chr1_1:74223352-74223371 | Msa0043170:three_prime_UTR | 30.0% |
| !!! | TTGATAATGTTTTGGGGTTT+AGG | - | chr1_1:74223395-74223414 | Msa0043170:three_prime_UTR | 30.0% |
| ! | AACTTTGAAGAATTTGAGGT+TGG | - | chr1_1:74223542-74223561 | Msa0043170:three_prime_UTR | 30.0% |
| TTTGTTTACTTAACACTCCT+AGG | - | chr1_1:74223627-74223646 | Msa0043170:three_prime_UTR | 30.0% | |
| !! | TTTTCCGATTCGTTTGATTT+CGG | + | chr1_1:74223718-74223737 | None:intergenic | 30.0% |
| !!! | GTAGCAATGTTTTAAAAACC+GGG | + | chr1_1:74223746-74223765 | None:intergenic | 30.0% |
| AATTAAGCCTATTCTTGGTT+TGG | - | chr1_1:74223882-74223901 | Msa0043170:intron | 30.0% | |
| TAAAGTTCCAAACCAAGAAT+AGG | + | chr1_1:74223892-74223911 | None:intergenic | 30.0% | |
| TTTGTATAGATTGAAGAAGC+AGG | - | chr1_1:74224006-74224025 | Msa0043170:intron | 30.0% | |
| !! | TATTTGTCACTTTATCTAGC+TGG | - | chr1_1:74224413-74224432 | Msa0043170:intron | 30.0% |
| ATCCTACAGAGAATTGAAAA+AGG | + | chr1_1:74224451-74224470 | None:intergenic | 30.0% | |
| ! | CAAATTGTGTTGTCATTTGA+TGG | - | chr1_1:74224528-74224547 | Msa0043170:intron | 30.0% |
| !! | ATGTGAAGTCAAGTTGATTT+AGG | - | chr1_1:74224619-74224638 | Msa0043170:CDS | 30.0% |
| !! | AGATCCACTTCTATTTCTAA+TGG | + | chr1_1:74224865-74224884 | None:intergenic | 30.0% |
| GGTAAATATCATTTGTAAGG+AGG | - | chr1_1:74225001-74225020 | Msa0043170:CDS | 30.0% | |
| !! | TAGGCATTGTTATGTGATTT+TGG | - | chr1_1:74225231-74225250 | Msa0043170:intron | 30.0% |
| AGAACAATGCAATAATGCAA+AGG | + | chr1_1:74225270-74225289 | None:intergenic | 30.0% | |
| ! | TGCATTGTTCTTTTTGTCAT+TGG | - | chr1_1:74225279-74225298 | Msa0043170:intron | 30.0% |
| ! | CAATTGATTATGCTGTTTGT+TGG | - | chr1_1:74225366-74225385 | Msa0043170:intron | 30.0% |
| ATGATGTTGTGCATTATGTT+TGG | - | chr1_1:74225690-74225709 | Msa0043170:CDS | 30.0% | |
| TGATGTTGTGCATTATGTTT+GGG | - | chr1_1:74225691-74225710 | Msa0043170:CDS | 30.0% | |
| ACCCTCATGTTATACAAATT+TGG | + | chr1_1:74225870-74225889 | None:intergenic | 30.0% | |
| GTATAACATGAGGGTTATTT+AGG | - | chr1_1:74225875-74225894 | Msa0043170:CDS | 30.0% | |
| ! | AGGGTTATTTAGGATACAAA+TGG | - | chr1_1:74225885-74225904 | Msa0043170:CDS | 30.0% |
| TGAGAATGGGAAGAATACTA+AGG | - | chr1_1:74223419-74223438 | Msa0043170:three_prime_UTR | 35.0% | |
| !! | CGGTTTAACTTGTTAAACCT+AGG | + | chr1_1:74223647-74223666 | None:intergenic | 35.0% |
| ACAATGTAGTCTGATTGAAC+TGG | + | chr1_1:74223693-74223712 | None:intergenic | 35.0% | |
| GTAACCGAAATCAAACGAAT+CGG | - | chr1_1:74223711-74223730 | Msa0043170:intron | 35.0% | |
| !!! | TTTTGCTGATTCAGCAAAAG+CGG | + | chr1_1:74224038-74224057 | None:intergenic | 35.0% |
| AGGATGAAACAAAGCAGATT+CGG | - | chr1_1:74224191-74224210 | Msa0043170:intron | 35.0% | |
| AAAGCAGATTCGGATGTTTA+TGG | - | chr1_1:74224201-74224220 | Msa0043170:intron | 35.0% | |
| !!! | GGTTGTTTTTATTAGTGCTC+TGG | - | chr1_1:74224276-74224295 | Msa0043170:intron | 35.0% |
| TATCAGAGCTGCATTTCTTT+AGG | - | chr1_1:74224374-74224393 | Msa0043170:intron | 35.0% | |
| !!! | CTCCTTTTTCAATTCTCTGT+AGG | - | chr1_1:74224446-74224465 | Msa0043170:intron | 35.0% |
| ATTATCTTCCATTTCAAGGC+TGG | + | chr1_1:74224583-74224602 | None:intergenic | 35.0% | |
| ATTCAAGTGTATGGAAAGAG+AGG | - | chr1_1:74224770-74224789 | Msa0043170:intron | 35.0% | |
| AGCACCATTAGAAATAGAAG+TGG | - | chr1_1:74224858-74224877 | Msa0043170:intron | 35.0% | |
| ACATGTTTATTCTTAGCCTC+AGG | - | chr1_1:74225034-74225053 | Msa0043170:CDS | 35.0% | |
| GAATTATTCATTACTCCCTC+CGG | - | chr1_1:74225063-74225082 | Msa0043170:CDS | 35.0% | |
| TGTTTATAATAGTGACCGGA+GGG | + | chr1_1:74225081-74225100 | None:intergenic | 35.0% | |
| TTGTTTATAATAGTGACCGG+AGG | + | chr1_1:74225082-74225101 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTTACCGG+AGG | - | chr1_1:74225197-74225216 | Msa0043170:intron | 35.0% | |
| TGCTTATAATAGTTACCGGA+GGG | - | chr1_1:74225198-74225217 | Msa0043170:intron | 35.0% | |
| ! | GCATTGTTATGTGATTTTGG+AGG | - | chr1_1:74225234-74225253 | Msa0043170:intron | 35.0% |
| ! | ACTAACATGTGCTGCAATTT+TGG | - | chr1_1:74225391-74225410 | Msa0043170:intron | 35.0% |
| !!! | CATATTTTGACGGAATGTCT+TGG | - | chr1_1:74225597-74225616 | Msa0043170:intron | 35.0% |
| !! | AATGTCTTGGAGCACTTTTT+AGG | - | chr1_1:74225610-74225629 | Msa0043170:intron | 35.0% |
| GCACAACATCATCAATAGAA+GGG | + | chr1_1:74225682-74225701 | None:intergenic | 35.0% | |
| TGCACAACATCATCAATAGA+AGG | + | chr1_1:74225683-74225702 | None:intergenic | 35.0% | |
| TTATTTATGCTAGCAGCTGT+TGG | - | chr1_1:74225789-74225808 | Msa0043170:intron | 35.0% | |
| !! | TTTGGGGTTTAGGTTGAGAA+TGG | - | chr1_1:74223405-74223424 | Msa0043170:three_prime_UTR | 40.0% |
| !! | TTGGGGTTTAGGTTGAGAAT+GGG | - | chr1_1:74223406-74223425 | Msa0043170:three_prime_UTR | 40.0% |
| GAATGGGAAGAATACTAAGG+TGG | - | chr1_1:74223422-74223441 | Msa0043170:three_prime_UTR | 40.0% | |
| TAAGGTGGAAACAGTGAATG+TGG | - | chr1_1:74223437-74223456 | Msa0043170:three_prime_UTR | 40.0% | |
| CTCCTCATCAGTCTTCTTAT+GGG | + | chr1_1:74223517-74223536 | None:intergenic | 40.0% | |
| GAGTTGAATCAGTTGAATCG+CGG | + | chr1_1:74223671-74223690 | None:intergenic | 40.0% | |
| ! | TTTTTCACTTACGTCGTCCA+CGG | + | chr1_1:74224122-74224141 | None:intergenic | 40.0% |
| AGAATCTTTGCTCGTTCAGA+AGG | + | chr1_1:74224154-74224173 | None:intergenic | 40.0% | |
| TCTCATCTCTGTTCAAGACA+AGG | - | chr1_1:74224171-74224190 | Msa0043170:intron | 40.0% | |
| TGTAGGATGACCAGTTTGAA+AGG | - | chr1_1:74224463-74224482 | Msa0043170:intron | 40.0% | |
| TATGGAAAGAGAGGATGACA+GGG | - | chr1_1:74224779-74224798 | Msa0043170:intron | 40.0% | |
| TAAGGACCTTTCTTTCTCTG+AGG | - | chr1_1:74224830-74224849 | Msa0043170:intron | 40.0% | |
| TTACTGCCTCAGAGAAAGAA+AGG | + | chr1_1:74224839-74224858 | None:intergenic | 40.0% | |
| ! | GAATGCTCATATTTAGGGTG+TGG | - | chr1_1:74224980-74224999 | Msa0043170:CDS | 40.0% |
| TTATTCTTAGCCTCAGGTAG+AGG | - | chr1_1:74225040-74225059 | Msa0043170:CDS | 40.0% | |
| TATTCTTAGCCTCAGGTAGA+GGG | - | chr1_1:74225041-74225060 | Msa0043170:CDS | 40.0% | |
| TGAATAATTCCCTCTACCTG+AGG | + | chr1_1:74225053-74225072 | None:intergenic | 40.0% | |
| !! | CAGTTCAGAAGTGTCATTTG+TGG | - | chr1_1:74225312-74225331 | Msa0043170:intron | 40.0% |
| AAATGCTACTAGAGCAGAAG+AGG | + | chr1_1:74225338-74225357 | None:intergenic | 40.0% | |
| ATCGAAGATCTGCATCAGAA+AGG | + | chr1_1:74225452-74225471 | None:intergenic | 40.0% | |
| ! | TGGAGCTGAGATTGACATTT+TGG | - | chr1_1:74225474-74225493 | Msa0043170:intron | 40.0% |
| ! | GGAGCTGAGATTGACATTTT+GGG | - | chr1_1:74225475-74225494 | Msa0043170:intron | 40.0% |
| ! | GAGCTGAGATTGACATTTTG+GGG | - | chr1_1:74225476-74225495 | Msa0043170:intron | 40.0% |
| !! | ACATTTTGGGGACTCGTTTT+TGG | - | chr1_1:74225488-74225507 | Msa0043170:intron | 40.0% |
| ! | GTAGAAGTTCTTTCGGTGTA+TGG | - | chr1_1:74225632-74225651 | Msa0043170:CDS | 40.0% |
| AAAGGTTACAGCCTTAGAGA+GGG | + | chr1_1:74225815-74225834 | None:intergenic | 40.0% | |
| AAAAGGTTACAGCCTTAGAG+AGG | + | chr1_1:74225816-74225835 | None:intergenic | 40.0% | |
| ! | CTAAGGCTGTAACCTTTTCA+CGG | - | chr1_1:74225818-74225837 | Msa0043170:intron | 40.0% |
| GTAACCAATCATCATCCTCG+AGG | + | chr1_1:74223467-74223486 | None:intergenic | 45.0% | |
| AGTCTTCTTATGGGCCTTAC+CGG | + | chr1_1:74223508-74223527 | None:intergenic | 45.0% | |
| CCTCCTCATCAGTCTTCTTA+TGG | + | chr1_1:74223518-74223537 | None:intergenic | 45.0% | |
| CCATAAGAAGACTGATGAGG+AGG | - | chr1_1:74223515-74223534 | Msa0043170:three_prime_UTR | 45.0% | |
| TGAATCAGTTGAATCGCGGT+CGG | + | chr1_1:74223667-74223686 | None:intergenic | 45.0% | |
| ACGAATCGGAAAACTGAACC+CGG | - | chr1_1:74223725-74223744 | Msa0043170:intron | 45.0% | |
| CACGGAAGGTTGCAATGAAT+TGG | + | chr1_1:74224104-74224123 | None:intergenic | 45.0% | |
| CAATTCATTGCAACCTTCCG+TGG | - | chr1_1:74224102-74224121 | Msa0043170:intron | 45.0% | |
| GTATGGAAAGAGAGGATGAC+AGG | - | chr1_1:74224778-74224797 | Msa0043170:intron | 45.0% | |
| AACAATGGTGAAGTGCAACG+AGG | - | chr1_1:74224943-74224962 | Msa0043170:intron | 45.0% | |
| !! | ACCGGAGGGAGTATTTGATT+AGG | - | chr1_1:74225212-74225231 | Msa0043170:intron | 45.0% |
| GCCTAATCAAATACTCCCTC+CGG | + | chr1_1:74225216-74225235 | None:intergenic | 45.0% | |
| CTGATGCAGATCTTCGATCA+TGG | - | chr1_1:74225454-74225473 | Msa0043170:intron | 45.0% | |
| ! | GTTCTTTCGGTGTATGGCAT+AGG | - | chr1_1:74225638-74225657 | Msa0043170:CDS | 45.0% |
| !!! | AATAATTAATGATTATATTT+TGG | + | chr1_1:74225768-74225787 | None:intergenic | 5.0% |
| GGTGGAAACAGTGAATGTGG+TGG | - | chr1_1:74223440-74223459 | Msa0043170:three_prime_UTR | 50.0% | |
| TGGACCTCGAGGATGATGAT+TGG | - | chr1_1:74223460-74223479 | Msa0043170:three_prime_UTR | 50.0% | |
| ATTGGTTACCTTCGCCACCA+AGG | - | chr1_1:74223478-74223497 | Msa0043170:three_prime_UTR | 50.0% | |
| TTGGTTACCTTCGCCACCAA+GGG | - | chr1_1:74223479-74223498 | Msa0043170:three_prime_UTR | 50.0% | |
| GGCCCATAAGAAGACTGATG+AGG | - | chr1_1:74223512-74223531 | Msa0043170:three_prime_UTR | 50.0% | |
| AGGCAGGCAGATCAGAAACA+TGG | + | chr1_1:74224340-74224359 | None:intergenic | 50.0% | |
| TTCCATTTCAAGGCTGGCAG+GGG | + | chr1_1:74224577-74224596 | None:intergenic | 50.0% | |
| CTTCCATTTCAAGGCTGGCA+GGG | + | chr1_1:74224578-74224597 | None:intergenic | 50.0% | |
| TCTTCCATTTCAAGGCTGGC+AGG | + | chr1_1:74224579-74224598 | None:intergenic | 50.0% | |
| GAAAGAGAGGATGACAGGGT+GGG | - | chr1_1:74224783-74224802 | Msa0043170:intron | 50.0% | |
| AAAGAGAGGATGACAGGGTG+GGG | - | chr1_1:74224784-74224803 | Msa0043170:intron | 50.0% | |
| !! | AGTGAATGTGGTGGACCTCG+AGG | - | chr1_1:74223449-74223468 | Msa0043170:three_prime_UTR | 55.0% |
| TCACTTACGTCGTCCACGGA+AGG | + | chr1_1:74224118-74224137 | None:intergenic | 55.0% | |
| AACCCCTGCCAGCCTTGAAA+TGG | - | chr1_1:74224572-74224591 | Msa0043170:CDS | 55.0% | |
| GGAAAGAGAGGATGACAGGG+TGG | - | chr1_1:74224782-74224801 | Msa0043170:intron | 55.0% | |
| AAGAGAGGATGACAGGGTGG+GGG | - | chr1_1:74224785-74224804 | Msa0043170:intron | 55.0% | |
| CCACAACAGCTGCCGTGAAA+AGG | + | chr1_1:74225833-74225852 | None:intergenic | 55.0% | |
| ! | CCTTTTCACGGCAGCTGTTG+TGG | - | chr1_1:74225830-74225849 | Msa0043170:intron | 55.0% |
| GCAGCTGTTGGCCCTCTCTA+AGG | - | chr1_1:74225801-74225820 | Msa0043170:intron | 60.0% | |
| CCTTCGCCACCAAGGGTCAC+CGG | - | chr1_1:74223486-74223505 | Msa0043170:three_prime_UTR | 65.0% | |
| GCCACCAAGGGTCACCGGTA+AGG | - | chr1_1:74223491-74223510 | Msa0043170:three_prime_UTR | 65.0% | |
| GCCTTACCGGTGACCCTTGG+TGG | + | chr1_1:74223495-74223514 | None:intergenic | 65.0% | |
| TGGGCCTTACCGGTGACCCT+TGG | + | chr1_1:74223498-74223517 | None:intergenic | 65.0% | |
| AGAGGATGACAGGGTGGGGG+TGG | - | chr1_1:74224788-74224807 | Msa0043170:intron | 65.0% | |
| !! | CCGGTGACCCTTGGTGGCGA+AGG | + | chr1_1:74223489-74223508 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 74223256 | 74225928 | 74223256 | ID=Msa0043170;Name=Msa0043170 |
| chr1_1 | mRNA | 74223256 | 74225928 | 74223256 | ID=Msa0043170-mRNA-1;Parent=Msa0043170;Name=Msa0043170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.8|1|0.75|0.4|5|471|194 |
| chr1_1 | exon | 74223256 | 74223721 | 74223256 | ID=Msa0043170-mRNA-1:exon:24986;Parent=Msa0043170-mRNA-1 |
| chr1_1 | exon | 74224544 | 74224716 | 74224544 | ID=Msa0043170-mRNA-1:exon:24985;Parent=Msa0043170-mRNA-1 |
| chr1_1 | exon | 74224962 | 74225169 | 74224962 | ID=Msa0043170-mRNA-1:exon:24984;Parent=Msa0043170-mRNA-1 |
| chr1_1 | exon | 74225625 | 74225767 | 74225625 | ID=Msa0043170-mRNA-1:exon:24983;Parent=Msa0043170-mRNA-1 |
| chr1_1 | exon | 74225863 | 74225928 | 74225863 | ID=Msa0043170-mRNA-1:exon:24982;Parent=Msa0043170-mRNA-1 |
| chr1_1 | CDS | 74225863 | 74225928 | 74225863 | ID=Msa0043170-mRNA-1:cds;Parent=Msa0043170-mRNA-1 |
| chr1_1 | CDS | 74225625 | 74225767 | 74225625 | ID=Msa0043170-mRNA-1:cds;Parent=Msa0043170-mRNA-1 |
| chr1_1 | CDS | 74224962 | 74225169 | 74224962 | ID=Msa0043170-mRNA-1:cds;Parent=Msa0043170-mRNA-1 |
| chr1_1 | CDS | 74224549 | 74224716 | 74224549 | ID=Msa0043170-mRNA-1:cds;Parent=Msa0043170-mRNA-1 |
| chr1_1 | three_prime_UTR | 74224544 | 74224548 | 74224544 | ID=Msa0043170-mRNA-1:three_prime_utr;Parent=Msa0043170-mRNA-1 |
| chr1_1 | three_prime_UTR | 74223256 | 74223721 | 74223256 | ID=Msa0043170-mRNA-1:three_prime_utr;Parent=Msa0043170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
