AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1377100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377100 MtrunA17_Chr1g0154011 100.000 148 0 0 1 148 1 148 1.22e-109 307
Msa1377100 MtrunA17_Chr7g0275361 92.568 148 11 0 1 148 1 148 4.04e-103 291
Msa1377100 MtrunA17_Chr3g0108261 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa1377100 MtrunA17_Chr5g0432831 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa1377100 MtrunA17_Chr8g0369311 90.541 148 14 0 1 148 57 204 9.57e-101 287
Msa1377100 MtrunA17_Chr4g0037011 88.514 148 17 0 1 148 1 148 5.46e-100 283
Msa1377100 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 1.48e-55 171
Msa1377100 MtrunA17_Chr2g0316201 48.252 143 74 0 4 146 8 150 9.30e-47 149
Msa1377100 MtrunA17_Chr2g0316211 47.887 142 74 0 5 146 9 150 1.13e-45 146
Msa1377100 MtrunA17_Chr8g0362321 46.575 146 73 1 2 142 5 150 1.92e-45 145
Msa1377100 MtrunA17_Chr4g0060351 45.890 146 74 1 2 142 5 150 1.08e-44 143
Msa1377100 MtrunA17_Chr3g0131871 49.306 144 71 2 5 146 6 149 6.49e-42 137
Msa1377100 MtrunA17_Chr1g0199951 44.776 134 72 2 3 135 43 175 3.06e-34 118
Msa1377100 MtrunA17_Chr3g0139901 40.816 147 83 3 5 147 7 153 3.16e-34 117
Msa1377100 MtrunA17_Chr4g0038891 42.969 128 73 0 4 131 35 162 3.61e-33 115
Msa1377100 MtrunA17_Chr5g0396451 41.406 128 75 0 4 131 35 162 1.48e-31 110
Msa1377100 MtrunA17_Chr4g0053191 38.158 152 87 2 1 145 4 155 9.06e-31 108
Msa1377100 MtrunA17_Chr5g0401831 34.868 152 92 2 1 145 4 155 1.46e-27 100
Msa1377100 MtrunA17_Chr5g0403591 36.765 136 83 2 5 139 33 166 3.29e-27 100
Msa1377100 MtrunA17_Chr4g0031181 34.815 135 74 2 15 135 18 152 1.54e-26 97.8
Msa1377100 MtrunA17_Chr8g0348701 34.959 123 78 2 26 146 25 147 3.25e-25 95.1
Msa1377100 MtrunA17_Chr7g0254701 34.965 143 93 0 4 146 13 155 3.46e-25 97.1
Msa1377100 MtrunA17_Chr8g0387131 38.182 110 66 2 39 146 38 147 2.68e-24 92.4
Msa1377100 MtrunA17_Chr2g0328001 33.333 144 82 2 15 144 18 161 4.99e-24 91.7
Msa1377100 MtrunA17_Chr4g0059291 33.333 123 80 2 26 146 25 147 1.98e-23 90.5
Msa1377100 MtrunA17_Chr8g0372391 40.777 103 59 2 1 102 15 116 1.70e-19 79.7
Msa1377100 MtrunA17_Chr4g0068301 34.188 117 71 3 2 114 11 125 1.23e-17 77.4
Msa1377100 MtrunA17_Chr5g0404931 37.864 103 62 2 1 102 15 116 1.99e-17 74.3
Msa1377100 MtrunA17_Chr8g0376111 36.066 122 68 3 4 115 43 164 5.46e-17 75.9
Msa1377100 MtrunA17_Chr8g0345331 34.188 117 68 3 4 115 8 120 3.95e-16 72.4
Msa1377100 MtrunA17_Chr7g0233631 36.066 122 68 3 4 115 38 159 4.33e-16 73.6
Msa1377100 MtrunA17_Chr7g0233611 36.066 122 68 3 4 115 38 159 9.45e-16 72.4
Msa1377100 MtrunA17_Chr7g0222941 30.081 123 76 3 3 115 90 212 3.67e-14 67.4
Msa1377100 MtrunA17_Chr4g0047301 28.667 150 94 4 4 143 672 818 3.23e-13 65.9
Msa1377100 MtrunA17_Chr4g0045101 32.787 122 72 3 4 115 37 158 3.84e-13 65.1
Msa1377100 MtrunA17_Chr2g0282211 27.815 151 96 4 3 143 681 828 7.99e-13 64.7
Msa1377100 MtrunA17_Chr1g0186291 29.293 99 56 2 43 140 30 115 1.41e-12 61.2
Msa1377100 MtrunA17_Chr8g0376201 29.787 141 88 4 3 133 192 331 6.91e-12 62.0
Msa1377100 MtrunA17_Chr2g0317631 29.268 123 77 3 3 115 306 428 8.49e-12 61.6
Msa1377100 MtrunA17_Chr1g0198021 27.642 123 79 3 3 115 137 259 2.23e-11 60.5
Msa1377100 MtrunA17_Chr1g0211131 32.609 92 52 3 34 115 853 944 6.01e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377100 AT1G64230.2 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa1377100 AT1G64230.1 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa1377100 AT5G53300.2 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa1377100 AT5G53300.4 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa1377100 AT5G53300.1 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa1377100 AT5G41700.5 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa1377100 AT5G41700.2 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa1377100 AT5G41700.1 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa1377100 AT4G27960.1 91.216 148 13 0 1 148 1 148 3.33e-102 289
Msa1377100 AT4G27960.2 91.216 148 13 0 1 148 31 178 1.39e-101 288
Msa1377100 AT3G08690.2 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa1377100 AT3G08690.1 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa1377100 AT5G56150.1 88.514 148 17 0 1 148 1 148 5.36e-100 283
Msa1377100 AT5G41700.4 89.933 149 14 1 1 148 1 149 1.05e-99 283
Msa1377100 AT1G64230.3 85.350 157 14 1 1 148 1 157 2.21e-98 280
Msa1377100 AT2G16740.1 85.714 147 21 0 1 147 1 147 9.44e-97 275
Msa1377100 AT1G64230.5 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa1377100 AT1G64230.4 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa1377100 AT3G08700.2 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa1377100 AT3G08700.1 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa1377100 AT5G41700.3 91.346 104 9 0 1 104 1 104 7.72e-70 207
Msa1377100 AT5G53300.3 88.991 109 10 1 1 107 1 109 6.15e-69 204
Msa1377100 AT5G56150.2 89.320 103 11 0 1 103 1 103 9.41e-68 201
Msa1377100 AT3G13550.1 48.276 145 75 0 2 146 37 181 2.66e-53 167
Msa1377100 AT1G16890.2 48.951 143 73 0 4 146 8 150 2.41e-47 150
Msa1377100 AT5G62540.1 51.880 133 64 0 2 134 5 137 9.41e-47 149
Msa1377100 AT1G78870.2 48.252 143 74 0 4 146 8 150 1.86e-46 148
Msa1377100 AT1G14400.1 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa1377100 AT1G14400.2 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa1377100 AT1G36340.2 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa1377100 AT1G36340.1 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa1377100 AT2G02760.1 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa1377100 AT2G02760.2 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa1377100 AT2G02760.4 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa1377100 AT2G02760.3 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa1377100 AT1G16890.3 46.711 152 72 1 4 146 8 159 1.42e-44 144
Msa1377100 AT3G13550.2 50.877 114 56 0 2 115 37 150 9.52e-43 139
Msa1377100 AT1G16890.1 52.174 115 55 0 32 146 3 117 8.86e-41 133
Msa1377100 AT1G78870.4 52.174 115 55 0 32 146 3 117 1.28e-40 132
Msa1377100 AT5G50870.1 46.528 144 75 2 5 146 6 149 6.01e-39 130
Msa1377100 AT1G78870.1 51.724 116 55 1 32 146 3 118 8.58e-39 128
Msa1377100 AT5G50870.2 43.226 155 75 3 5 146 6 160 1.61e-35 122
Msa1377100 AT3G24515.1 43.312 157 76 3 3 146 8 164 5.11e-35 125
Msa1377100 AT2G32790.1 47.333 150 70 4 2 146 30 175 1.36e-34 119
Msa1377100 AT5G25760.1 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa1377100 AT5G25760.2 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa1377100 AT3G24515.3 37.912 182 75 4 3 146 8 189 3.00e-32 119
Msa1377100 AT1G78870.3 46.667 105 56 0 4 108 8 112 4.20e-31 108
Msa1377100 AT3G57870.1 38.816 152 86 3 1 145 5 156 1.46e-30 108
Msa1377100 AT3G20060.1 41.406 128 75 0 4 131 39 166 2.51e-30 108
Msa1377100 AT1G50490.1 42.188 128 74 0 4 131 38 165 6.62e-30 107
Msa1377100 AT3G20060.2 42.017 119 67 1 13 131 5 121 1.11e-28 102
Msa1377100 AT2G46030.5 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa1377100 AT2G46030.1 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa1377100 AT2G46030.4 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa1377100 AT2G46030.2 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa1377100 AT2G46030.3 36.486 148 91 3 1 146 73 219 2.12e-27 102
Msa1377100 AT5G05080.2 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa1377100 AT5G05080.3 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa1377100 AT5G05080.1 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa1377100 AT5G05080.4 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa1377100 AT4G36800.2 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa1377100 AT4G36800.1 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa1377100 AT3G55380.1 36.296 135 72 2 15 135 19 153 8.44e-27 99.0
Msa1377100 AT1G63800.2 40.000 110 64 2 39 146 23 132 4.10e-25 94.7
Msa1377100 AT1G63800.1 40.000 110 64 2 39 146 38 147 4.43e-25 95.1
Msa1377100 AT5G41340.1 35.772 123 77 2 26 146 25 147 4.65e-25 95.1
Msa1377100 AT5G59300.1 34.028 144 81 2 15 144 18 161 1.48e-24 93.2
Msa1377100 AT3G46460.1 33.333 144 82 2 15 144 18 161 2.34e-24 92.8
Msa1377100 AT2G18600.1 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa1377100 AT2G18600.2 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa1377100 AT5G41340.2 38.462 104 62 2 45 146 9 112 2.30e-22 87.0
Msa1377100 AT3G17000.1 36.752 117 68 3 2 114 12 126 1.45e-19 83.2
Msa1377100 AT3G55380.2 28.402 169 73 3 15 135 19 187 2.36e-19 80.5
Msa1377100 AT1G75440.1 39.815 108 59 3 1 107 15 117 2.60e-18 77.0
Msa1377100 AT1G45050.1 38.835 103 61 2 1 102 15 116 9.46e-18 75.5
Msa1377100 AT5G42990.1 39.806 103 60 2 1 102 15 116 1.22e-17 75.1
Msa1377100 AT1G17280.9 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT1G17280.7 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT1G17280.6 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT1G17280.2 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT1G17280.5 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT1G17280.3 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT1G17280.1 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT1G17280.8 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa1377100 AT4G36410.1 37.037 108 62 3 1 107 15 117 5.73e-17 73.6
Msa1377100 AT5G50430.1 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa1377100 AT5G50430.2 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa1377100 AT3G46460.3 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa1377100 AT3G46460.2 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa1377100 AT1G17280.4 32.520 123 68 3 4 115 8 126 8.83e-16 72.0

Find 71 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACCTTTGGTGGCTTAAA+TGG 0.184645 tig0019847:+152869 None:intergenic
AACCTTGGAGATGGAATCTT+AGG 0.258527 tig0019847:+155406 None:intergenic
CTCCCATTGCTGTTGATGTT+AGG 0.317472 tig0019847:+152078 None:intergenic
ATAAAACTTGGTTGTTGGTT+TGG 0.323051 tig0019847:+151217 None:intergenic
GCGTCATTGTTCTATTATAT+AGG 0.361002 tig0019847:-151160 Msa1377100:three_prime_UTR
TAAAACTTGGTTGTTGGTTT+GGG 0.363426 tig0019847:+151218 None:intergenic
TTGTACATGTGGGCAATATC+AGG 0.375872 tig0019847:+151471 None:intergenic
TCAGGCACCAAAGGATCATC+TGG 0.377413 tig0019847:+151489 None:intergenic
CCTCCTGTGTCTTGCAGTGC+TGG 0.380892 tig0019847:-153996 Msa1377100:intron
GGTGGCTTAAATGGATAATC+TGG 0.389530 tig0019847:+152878 None:intergenic
TGATTTGAACATATAGATAA+TGG 0.409991 tig0019847:+151071 None:intergenic
GTCGGATAAAACTTGGTTGT+TGG 0.415903 tig0019847:+151212 None:intergenic
AAGTTCTGTTAGCGAGAGAA+AGG 0.423440 tig0019847:+155434 None:intergenic
TGAAACAGGTCTTCACCAAC+AGG 0.427366 tig0019847:+152977 None:intergenic
TCCCATTGCTGTTGATGTTA+GGG 0.427658 tig0019847:+152079 None:intergenic
TAGTAGCTTGCCAATGAAAC+AGG 0.428793 tig0019847:+152963 None:intergenic
ACATATAGATAATGGTATAT+AGG 0.430215 tig0019847:+151079 None:intergenic
TACTAGATAGTTACCTTTGG+TGG 0.430453 tig0019847:+152860 None:intergenic
TGATATAGTGATTAATATAG+TGG 0.434916 tig0019847:+151134 None:intergenic
TCCAAACCCAGATGATCCTT+TGG 0.446078 tig0019847:-151496 Msa1377100:CDS
ATTCCACTACATAAATTAAA+CGG 0.446686 tig0019847:-151182 Msa1377100:three_prime_UTR
ATAAATGCTTGTGGTTCTAA+AGG 0.456889 tig0019847:-151383 Msa1377100:three_prime_UTR
GGTATATAGGTTATGTAGTA+AGG 0.460900 tig0019847:+151092 None:intergenic
ATGAGACTACTGCCCGGTCT+TGG 0.466598 tig0019847:-151431 Msa1377100:CDS
ACCAAAGGATCATCTGGGTT+TGG 0.469354 tig0019847:+151495 None:intergenic
TTGGTGAAGACCTGTTTCAT+TGG 0.470566 tig0019847:-152973 Msa1377100:CDS
TCACTTAGTCGGATAAAACT+TGG 0.471898 tig0019847:+151205 None:intergenic
ACGCATTACTAAGGAGTTGA+AGG 0.472891 tig0019847:-154033 Msa1377100:CDS
ACCCTAACATCAACAGCAAT+GGG 0.488484 tig0019847:-152080 Msa1377100:CDS
TCATTGGCAAGCTACTATCA+TGG 0.489308 tig0019847:-152957 Msa1377100:CDS
CATATTTCTGAGTCCAAGAC+CGG 0.489374 tig0019847:+151418 None:intergenic
CCGGGCAGTAGTCTCATACT+TGG 0.490655 tig0019847:+151437 None:intergenic
GGCCTCAAAACGCATTACTA+AGG 0.503308 tig0019847:-154042 Msa1377100:CDS
ACGCCGTTTAATTTATGTAG+TGG 0.509779 tig0019847:+151179 None:intergenic
TTCATTAGGTTGAACTGCAA+TGG 0.514276 tig0019847:-154063 Msa1377100:intron
TGTAGTGGAATTCACTTAGT+CGG 0.514363 tig0019847:+151194 None:intergenic
AGGAATACACCACCAGCATA+AGG 0.516668 tig0019847:+152920 None:intergenic
TATACTCATGCAGGCCCTGT+TGG 0.522486 tig0019847:-152992 Msa1377100:intron
CTTTGTCAGTCTTGTACATG+TGG 0.533650 tig0019847:+151460 None:intergenic
ACATGGTAGAAACTCGACTT+AGG 0.539690 tig0019847:+151048 None:intergenic
TCCTGCTCTTACTGTTTCGA+AGG 0.541092 tig0019847:-152022 Msa1377100:intron
ATCGAAGCAAACCTTGGAGA+TGG 0.543129 tig0019847:+155397 None:intergenic
CACCCTAACATCAACAGCAA+TGG 0.544450 tig0019847:-152081 Msa1377100:CDS
CATTGGCAAGCTACTATCAT+GGG 0.548045 tig0019847:-152956 Msa1377100:CDS
GCAGAGAGCAAATTGACAGC+AGG 0.555230 tig0019847:+151526 None:intergenic
GCAAGCTACTATCATGGGAC+CGG 0.562370 tig0019847:-152951 Msa1377100:CDS
ACCTTGGAGATGGAATCTTA+GGG 0.563827 tig0019847:+155407 None:intergenic
ACCCTAAGATTCCATCTCCA+AGG 0.564855 tig0019847:-155408 Msa1377100:intron
AGTTCTGTTAGCGAGAGAAA+GGG 0.567493 tig0019847:+155435 None:intergenic
GGCTTAAATGGATAATCTGG+TGG 0.570933 tig0019847:+152881 None:intergenic
ACCTTCGAAACAGTAAGAGC+AGG 0.586563 tig0019847:+152021 None:intergenic
CCGGCAGACAGTCCTTATGC+TGG 0.594140 tig0019847:-152932 Msa1377100:CDS
AAAGGGAGCGATGCGTTGTG+AGG 0.599804 tig0019847:+155452 None:intergenic
GTGGGAAGTGAATGGTCACT+AGG 0.600222 tig0019847:+152900 None:intergenic
CCAGCATAAGGACTGTCTGC+CGG 0.604386 tig0019847:+152932 None:intergenic
CATTGCTGTTGATGTTAGGG+TGG 0.612271 tig0019847:+152082 None:intergenic
TGGGCAATATCAGGCACCAA+AGG 0.612823 tig0019847:+151480 None:intergenic
TTATCCATTTAAGCCACCAA+AGG 0.622832 tig0019847:-152873 Msa1377100:intron
GCAGACAGTCCTTATGCTGG+TGG 0.624021 tig0019847:-152929 Msa1377100:CDS
ATAATCTGGTGGGAAGTGAA+TGG 0.636084 tig0019847:+152892 None:intergenic
GCTTAAATGGATAATCTGGT+GGG 0.637843 tig0019847:+152882 None:intergenic
CAGGCACCAAAGGATCATCT+GGG 0.640642 tig0019847:+151490 None:intergenic
TTGACATTCTGAAAGAGCAG+TGG 0.642055 tig0019847:-152047 Msa1377100:CDS
CCAAGTATGAGACTACTGCC+CGG 0.645693 tig0019847:-151437 Msa1377100:CDS
TGAACTAGCATAAATGCTTG+TGG 0.646131 tig0019847:-151392 Msa1377100:exon
TTTGTCAGTCTTGTACATGT+GGG 0.652799 tig0019847:+151461 None:intergenic
ATACCAGCACTGCAAGACAC+AGG 0.653347 tig0019847:+153993 None:intergenic
CCAGCACTGCAAGACACAGG+AGG 0.655706 tig0019847:+153996 None:intergenic
ATATTTCTGAGTCCAAGACC+GGG 0.658098 tig0019847:+151419 None:intergenic
CAGCACTGCAAGACACAGGA+GGG 0.671340 tig0019847:+153997 None:intergenic
GAAACAGGTCTTCACCAACA+GGG 0.724000 tig0019847:+152978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTGTTATAGAAA+TGG - tig0019847:151566-151585 Msa1377100:intron 10.0%
!! GTTTAAAGAAATATTATATT+TGG - tig0019847:151780-151799 Msa1377100:intron 10.0%
!!! GATATTTTATAATATGATTA+CGG - tig0019847:151823-151842 Msa1377100:intron 10.0%
!!! ATATTTTATAATATGATTAC+GGG - tig0019847:151824-151843 Msa1377100:intron 10.0%
!!! ATCAAATAGTTTTTTAATTT+TGG + tig0019847:153121-153140 None:intergenic 10.0%
!! AAAATTAAAAAACTATTTGA+TGG - tig0019847:153120-153139 Msa1377100:intron 10.0%
!! AAATTAAAAAACTATTTGAT+GGG - tig0019847:153121-153140 Msa1377100:intron 10.0%
!!! AAAATTTTGAAAAGGATTTT+AGG - tig0019847:151302-151321 Msa1377100:three_prime_UTR 15.0%
!!! AAATTTTGAAAAGGATTTTA+GGG - tig0019847:151303-151322 Msa1377100:three_prime_UTR 15.0%
!! TTATATTTCGTTATAATTGT+GGG - tig0019847:152045-152064 Msa1377100:CDS 15.0%
!! TTCACTTTAAATTAAGTAAA+TGG + tig0019847:152201-152220 None:intergenic 15.0%
!! TATAATATATAAAGATAACG+AGG + tig0019847:153460-153479 None:intergenic 15.0%
!! ATCTATACAACAAATATTAA+AGG + tig0019847:154164-154183 None:intergenic 15.0%
!!! TGTTTTGAAAATAATGTTTT+TGG - tig0019847:154301-154320 Msa1377100:intron 15.0%
!!! TATTTCATTTTCTATACTTT+TGG - tig0019847:154683-154702 Msa1377100:intron 15.0%
!!! TTTGTGTGAAAATTTTGAAA+AGG - tig0019847:151294-151313 Msa1377100:three_prime_UTR 20.0%
!!! AATTATTTCCTGAAGTATTA+TGG - tig0019847:151953-151972 Msa1377100:intron 20.0%
!! ATATAACATGTAACTTAAGT+CGG + tig0019847:152031-152050 None:intergenic 20.0%
!! GTTATATTTCGTTATAATTG+TGG - tig0019847:152044-152063 Msa1377100:CDS 20.0%
!! GAATTGAGTTATAAATAACA+TGG - tig0019847:152218-152237 Msa1377100:intron 20.0%
!! AGTTATAAATAACATGGAAT+GGG - tig0019847:152224-152243 Msa1377100:intron 20.0%
!! AACAGAATTAAGTTTATTAC+AGG + tig0019847:152278-152297 None:intergenic 20.0%
!!! AACTTAATTCTGTTTTGAAA+TGG - tig0019847:152284-152303 Msa1377100:intron 20.0%
!! TTGTCTTAAATTGTTTCATT+AGG - tig0019847:152391-152410 Msa1377100:intron 20.0%
!!! TAAGAACATGTTAACTTTTT+TGG + tig0019847:152582-152601 None:intergenic 20.0%
!! AAAAAGTTAACATGTTCTTA+TGG - tig0019847:152582-152601 Msa1377100:intron 20.0%
!! ATGATTCAACAAAGAAAATA+TGG + tig0019847:152649-152668 None:intergenic 20.0%
!!! TATTTTATCTTGACTATTTG+TGG - tig0019847:153173-153192 Msa1377100:intron 20.0%
!!! ATTTTATCTTGACTATTTGT+GGG - tig0019847:153174-153193 Msa1377100:intron 20.0%
!! TTTATATATTATACTCATGC+AGG - tig0019847:153467-153486 Msa1377100:intron 20.0%
!!! ATATAATCATCTAAGATTCT+TGG - tig0019847:153671-153690 Msa1377100:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG - tig0019847:153805-153824 Msa1377100:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG - tig0019847:153806-153825 Msa1377100:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG - tig0019847:153805-153824 Msa1377100:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG - tig0019847:153806-153825 Msa1377100:intron 20.0%
!!! TTTAATTGTTCTTGTTTATC+TGG - tig0019847:153957-153976 Msa1377100:intron 20.0%
!!! TTAATTGTTCTTGTTTATCT+GGG - tig0019847:153958-153977 Msa1377100:intron 20.0%
!!! GAAAATAATGTTTTTGGTTT+AGG - tig0019847:154307-154326 Msa1377100:intron 20.0%
!!! TTTTTACTTCTGAATTAACT+TGG + tig0019847:154624-154643 None:intergenic 20.0%
!! AAACTATTGCTTAAAATCTA+TGG - tig0019847:154642-154661 Msa1377100:intron 20.0%
!!! AGTGAAAAAAATGTTGTTTT+TGG - tig0019847:155152-155171 Msa1377100:intron 20.0%
!!! GTGAAAAAAATGTTGTTTTT+GGG - tig0019847:155153-155172 Msa1377100:intron 20.0%
!! ATTCCACTACATAAATTAAA+CGG - tig0019847:155286-155305 Msa1377100:intron 20.0%
!! TGATATAGTGATTAATATAG+TGG + tig0019847:155337-155356 None:intergenic 20.0%
!!! ACATATAGATAATGGTATAT+AGG + tig0019847:155392-155411 None:intergenic 20.0%
!! TGATTTGAACATATAGATAA+TGG + tig0019847:155400-155419 None:intergenic 20.0%
!! GGAATAGAATTTTCATTCTA+GGG - tig0019847:151168-151187 Msa1377100:three_prime_UTR 25.0%
!!! ATTTTCATTCTAGGGTTTTT+AGG - tig0019847:151176-151195 Msa1377100:three_prime_UTR 25.0%
!!! TTTTCATTCTAGGGTTTTTA+GGG - tig0019847:151177-151196 Msa1377100:three_prime_UTR 25.0%
!!! TTTTCTTGTTTTCGATTTAC+TGG - tig0019847:151223-151242 Msa1377100:three_prime_UTR 25.0%
! ACATAGAAGGATAATAACAA+TGG + tig0019847:151664-151683 None:intergenic 25.0%
! AAATAATAAGGACACATAGA+AGG + tig0019847:151677-151696 None:intergenic 25.0%
! TATGTGTCCTTATTATTTGT+TGG - tig0019847:151679-151698 Msa1377100:intron 25.0%
!!! TTATATTTGGGTTGATATGT+TGG - tig0019847:151793-151812 Msa1377100:intron 25.0%
!!! TATATTTGGGTTGATATGTT+GGG - tig0019847:151794-151813 Msa1377100:intron 25.0%
! TATAACATGTAACTTAAGTC+GGG + tig0019847:152030-152049 None:intergenic 25.0%
! AATCAAACTTATTTGGTCAA+TGG + tig0019847:152087-152106 None:intergenic 25.0%
! ATTGACCAAATAAGTTTGAT+TGG - tig0019847:152086-152105 Msa1377100:CDS 25.0%
! ACTTTCCAATCAAACTTATT+TGG + tig0019847:152094-152113 None:intergenic 25.0%
! GAGTTATAAATAACATGGAA+TGG - tig0019847:152223-152242 Msa1377100:intron 25.0%
!!! TTAATTCTGTTTTGAAATGG+AGG - tig0019847:152287-152306 Msa1377100:intron 25.0%
!!! TAATTCTGTTTTGAAATGGA+GGG - tig0019847:152288-152307 Msa1377100:intron 25.0%
!! AACAATTTAAGACAAACTTC+AGG + tig0019847:152386-152405 None:intergenic 25.0%
! AATATTGAAACAACAGGAAT+GGG + tig0019847:152536-152555 None:intergenic 25.0%
! AAATATTGAAACAACAGGAA+TGG + tig0019847:152537-152556 None:intergenic 25.0%
!!! TTCTGAAATATTGAAACAAC+AGG + tig0019847:152542-152561 None:intergenic 25.0%
! ACAAATATTTGTAAAGAGGA+AGG + tig0019847:152625-152644 None:intergenic 25.0%
!!! TCTTTTGCCATTTTCAAATA+TGG - tig0019847:152695-152714 Msa1377100:intron 25.0%
! ATTCCAATCAACAATCATAT+AGG - tig0019847:153295-153314 Msa1377100:intron 25.0%
! TAACTATCTAGTAATGAGAT+GGG - tig0019847:153618-153637 Msa1377100:intron 25.0%
!!! AGATTCTTGGTTTTTAATTG+TGG - tig0019847:153684-153703 Msa1377100:intron 25.0%
! ACCATGTCTCAATATTAAAA+TGG + tig0019847:154006-154025 None:intergenic 25.0%
! ATCTCTTATATTCAAGTATC+TGG + tig0019847:154110-154129 None:intergenic 25.0%
! TGCTTAAATTATTCACAATG+CGG - tig0019847:154331-154350 Msa1377100:intron 25.0%
!!! ATGTTTGTGCTTTTTACTTA+TGG - tig0019847:154526-154545 Msa1377100:intron 25.0%
! TTATGGAAAAAAGTCTTGAT+AGG - tig0019847:154543-154562 Msa1377100:intron 25.0%
! GATAGGTATATTGATGTTTA+TGG - tig0019847:154560-154579 Msa1377100:intron 25.0%
!!! TTTACCCAGTTTTTTATACA+AGG - tig0019847:154793-154812 Msa1377100:intron 25.0%
!!! TTACCCAGTTTTTTATACAA+GGG - tig0019847:154794-154813 Msa1377100:intron 25.0%
! ATTACTTGAGAAGAATAAAG+TGG - tig0019847:154834-154853 Msa1377100:intron 25.0%
! TTACTTGAGAAGAATAAAGT+GGG - tig0019847:154835-154854 Msa1377100:intron 25.0%
! CTGAGGTAATTAAAAAATTC+TGG + tig0019847:154866-154885 None:intergenic 25.0%
!!! TTTCTACCATGTTTTTATGT+AGG - tig0019847:155431-155450 Msa1377100:five_prime_UTR 25.0%
AAAATCGAGTGAATCGAAAA+CGG + tig0019847:151105-151124 None:intergenic 30.0%
TTACACAAGGATAAACAGAA+GGG + tig0019847:151130-151149 None:intergenic 30.0%
! TAACGCTTACTTTGTTTGAT+CGG - tig0019847:151147-151166 Msa1377100:three_prime_UTR 30.0%
! CGGAATAGAATTTTCATTCT+AGG - tig0019847:151167-151186 Msa1377100:three_prime_UTR 30.0%
!! TTGTTTTCGATTTACTGGTT+TGG - tig0019847:151228-151247 Msa1377100:three_prime_UTR 30.0%
!!! TGTTTTCGATTTACTGGTTT+GGG - tig0019847:151229-151248 Msa1377100:three_prime_UTR 30.0%
!!! TAAGCACTTTTGAGATTGTT+TGG - tig0019847:151424-151443 Msa1377100:CDS 30.0%
!!! AAGCACTTTTGAGATTGTTT+GGG - tig0019847:151425-151444 Msa1377100:CDS 30.0%
ATTACGTTGTTTATCCTAAC+AGG - tig0019847:151638-151657 Msa1377100:intron 30.0%
CAAACGTCCAACAAATAATA+AGG + tig0019847:151689-151708 None:intergenic 30.0%
! TATTTGTTGGACGTTTGAAA+TGG - tig0019847:151692-151711 Msa1377100:intron 30.0%
!! CTTTTACATCAAGTTGCTTT+AGG - tig0019847:151858-151877 Msa1377100:intron 30.0%
!! CTTGTTATGTTTTTCCTTGT+TGG - tig0019847:151930-151949 Msa1377100:intron 30.0%
TTCAGGAAATAATTCCAACA+AGG + tig0019847:151947-151966 None:intergenic 30.0%
TATTTGGTCAATGGTCAATA+AGG + tig0019847:152078-152097 None:intergenic 30.0%
! GAAAGCATAACAAGACATTA+CGG + tig0019847:152134-152153 None:intergenic 30.0%
GAATTAAGTTTATTACAGGC+AGG + tig0019847:152274-152293 None:intergenic 30.0%
! TTAGTTCAGTTTTTGAATCG+AGG - tig0019847:152358-152377 Msa1377100:intron 30.0%
AACATGTTCTTATGGTATTC+TGG - tig0019847:152590-152609 Msa1377100:intron 30.0%
TGGCACAAATATTTGTAAAG+AGG + tig0019847:152629-152648 None:intergenic 30.0%
AAATGGGCCATATTTGAAAA+TGG + tig0019847:152705-152724 None:intergenic 30.0%
! ATATGGCCCATTTTCAAATA+TGG - tig0019847:152712-152731 Msa1377100:intron 30.0%
AGCAAGCCATATTTGAAAAT+GGG + tig0019847:152721-152740 None:intergenic 30.0%
TAGCAAGCCATATTTGAAAA+TGG + tig0019847:152722-152741 None:intergenic 30.0%
GGGTCACATAATTGTATAAA+AGG - tig0019847:153141-153160 Msa1377100:intron 30.0%
CTTCTCGCATACTTAAAAAT+AGG - tig0019847:153219-153238 Msa1377100:intron 30.0%
TGTCCTATATGATTGTTGAT+TGG + tig0019847:153301-153320 None:intergenic 30.0%
!! GACTATATAGTAGCCATTTT+AGG + tig0019847:153358-153377 None:intergenic 30.0%
! GAAGCTTCTTTTCTATGTAT+AGG - tig0019847:153429-153448 Msa1377100:intron 30.0%
CATTACTAGATAGTTACCTT+TGG + tig0019847:153614-153633 None:intergenic 30.0%
GTAACTATCTAGTAATGAGA+TGG - tig0019847:153617-153636 Msa1377100:intron 30.0%
!! GCCATTTTAATATTGAGACA+TGG - tig0019847:154002-154021 Msa1377100:CDS 30.0%
GATATTTATAGCATGCTTGT+AGG - tig0019847:154181-154200 Msa1377100:intron 30.0%
ATGTTTATGGAGAAGTTGAA+TGG - tig0019847:154573-154592 Msa1377100:intron 30.0%
!!! AGTTTTTTCTAGTTAGCTGT+TGG - tig0019847:154722-154741 Msa1377100:intron 30.0%
TAAAAAACTGGGTAAAAGCT+AGG + tig0019847:154789-154808 None:intergenic 30.0%
CTTCCCTTGTATAAAAAACT+GGG + tig0019847:154800-154819 None:intergenic 30.0%
ACTTCCCTTGTATAAAAAAC+TGG + tig0019847:154801-154820 None:intergenic 30.0%
TCTACTGTAATAATCAACTG+AGG + tig0019847:154883-154902 None:intergenic 30.0%
ATTATTACAGTAGACAGTTG+TGG - tig0019847:154889-154908 Msa1377100:intron 30.0%
!! ATAAATGCTTGTGGTTCTAA+AGG - tig0019847:155085-155104 Msa1377100:intron 30.0%
! TCCTGTGAAAAACATGTTTT+GGG - tig0019847:155110-155129 Msa1377100:intron 30.0%
!! TAAAACTTGGTTGTTGGTTT+GGG + tig0019847:155253-155272 None:intergenic 30.0%
! ATAAAACTTGGTTGTTGGTT+TGG + tig0019847:155254-155273 None:intergenic 30.0%
GCGTCATTGTTCTATTATAT+AGG - tig0019847:155308-155327 Msa1377100:intron 30.0%
GGTATATAGGTTATGTAGTA+AGG + tig0019847:155379-155398 None:intergenic 30.0%
GTAGTACCTACATAAAAACA+TGG + tig0019847:155440-155459 None:intergenic 30.0%
GTTACACAAGGATAAACAGA+AGG + tig0019847:151131-151150 None:intergenic 35.0%
AACAAAGTAAGCGTTACACA+AGG + tig0019847:151143-151162 None:intergenic 35.0%
ACTTGTTTGAGCTTATCTAC+TGG - tig0019847:151399-151418 Msa1377100:exon 35.0%
GATAATAACAATGGCCTGTT+AGG + tig0019847:151655-151674 None:intergenic 35.0%
CTCTTCAACCATAATACTTC+AGG + tig0019847:151964-151983 None:intergenic 35.0%
!! CATGGAATGGGAGTATTATT+TGG - tig0019847:152236-152255 Msa1377100:intron 35.0%
!! TTCATTAGGTTGAACTGCAA+TGG - tig0019847:152405-152424 Msa1377100:intron 35.0%
AAAGCCAAAAATCCGACATA+TGG - tig0019847:152776-152795 Msa1377100:intron 35.0%
CGCAATAATGCATTCATATC+AGG + tig0019847:152907-152926 None:intergenic 35.0%
GAATGCATTATTGCGAAAGT+CGG - tig0019847:152912-152931 Msa1377100:CDS 35.0%
AATGCATTATTGCGAAAGTC+GGG - tig0019847:152913-152932 Msa1377100:CDS 35.0%
CATCTTGTCTGAACTGTATT+GGG - tig0019847:152970-152989 Msa1377100:CDS 35.0%
GATTTATTGCAACCTCGATA+AGG - tig0019847:153006-153025 Msa1377100:intron 35.0%
GATAAGGATCCTAGATTTGA+TGG - tig0019847:153022-153041 Msa1377100:intron 35.0%
ATCTACTGTCCATCAAATCT+AGG + tig0019847:153034-153053 None:intergenic 35.0%
! TGAGAGCATGATTTGATACA+AGG - tig0019847:153267-153286 Msa1377100:intron 35.0%
GCTTAAATGGATAATCTGGT+GGG + tig0019847:153589-153608 None:intergenic 35.0%
TTATCCATTTAAGCCACCAA+AGG - tig0019847:153595-153614 Msa1377100:intron 35.0%
TACTAGATAGTTACCTTTGG+TGG + tig0019847:153611-153630 None:intergenic 35.0%
TTTGACCTTAGCAATACATC+CGG + tig0019847:153718-153737 None:intergenic 35.0%
TGTATTGCTAAGGTCAAATG+CGG - tig0019847:153720-153739 Msa1377100:intron 35.0%
TTGTTGTCATGATGTAGTTG+AGG - tig0019847:153758-153777 Msa1377100:intron 35.0%
AATCCATGTTACCACAATTG+AGG + tig0019847:153784-153803 None:intergenic 35.0%
ATATCAAAGCAGAACCTTCA+TGG - tig0019847:154053-154072 Msa1377100:exon 35.0%
ATGGTTCATGTCATTGACAT+AGG - tig0019847:154072-154091 Msa1377100:intron 35.0%
! ATCTTTTCTCCCTTTTCTTG+AGG - tig0019847:154240-154259 Msa1377100:intron 35.0%
TACGATAATATGCCTTGGTT+GGG - tig0019847:154469-154488 Msa1377100:intron 35.0%
CAATAAGTTAATCCCAACCA+AGG + tig0019847:154484-154503 None:intergenic 35.0%
TTATGGAGAAGTTGAATGGT+AGG - tig0019847:154577-154596 Msa1377100:intron 35.0%
TATGGAGAAGTTGAATGGTA+GGG - tig0019847:154578-154597 Msa1377100:intron 35.0%
GATTTATCTTGTATTGCTGC+AGG - tig0019847:154918-154937 Msa1377100:intron 35.0%
! TTTGTCAGTCTTGTACATGT+GGG + tig0019847:155010-155029 None:intergenic 35.0%
TGAACTAGCATAAATGCTTG+TGG - tig0019847:155076-155095 Msa1377100:intron 35.0%
! CTCCTGTGAAAAACATGTTT+TGG - tig0019847:155109-155128 Msa1377100:intron 35.0%
! TCCCAAAACATGTTTTTCAC+AGG + tig0019847:155114-155133 None:intergenic 35.0%
!!! AACATGTTTTGGGATGCAAA+AGG - tig0019847:155120-155139 Msa1377100:intron 35.0%
TCACTTAGTCGGATAAAACT+TGG + tig0019847:155266-155285 None:intergenic 35.0%
! TGTAGTGGAATTCACTTAGT+CGG + tig0019847:155277-155296 None:intergenic 35.0%
! ACGCCGTTTAATTTATGTAG+TGG + tig0019847:155292-155311 None:intergenic 35.0%
AGTTCTGTTAGCGAGAGAAA+GGG + tig0019847:151036-151055 None:intergenic 40.0%
AAGTTCTGTTAGCGAGAGAA+AGG + tig0019847:151037-151056 None:intergenic 40.0%
ACCTTGGAGATGGAATCTTA+GGG + tig0019847:151064-151083 None:intergenic 40.0%
AACCTTGGAGATGGAATCTT+AGG + tig0019847:151065-151084 None:intergenic 40.0%
GAAGAAATCGAAGCAAACCT+TGG + tig0019847:151080-151099 None:intergenic 40.0%
GTTGCTTGTGTTAGAGCTTA+CGG - tig0019847:151363-151382 Msa1377100:three_prime_UTR 40.0%
! GTTAGAGCTTACGGTTTGTT+TGG - tig0019847:151372-151391 Msa1377100:three_prime_UTR 40.0%
!! TTGGGTTGATATGTTGGGAT+TGG - tig0019847:151799-151818 Msa1377100:intron 40.0%
TTTAGGCCTCCAAGTATGTT+GGG - tig0019847:151875-151894 Msa1377100:intron 40.0%
ATGCCAAGACAACAAGAACA+GGG + tig0019847:151905-151924 None:intergenic 40.0%
ATGCATCAACACACTCTCAT+TGG - tig0019847:151996-152015 Msa1377100:intron 40.0%
TATTACAGGCAGGCAGTAAA+AGG + tig0019847:152264-152283 None:intergenic 40.0%
!!! CTGTTTTGAAATGGAGGGAT+AGG - tig0019847:152293-152312 Msa1377100:intron 40.0%
! CTCCTTAGTAATGCGTTTTG+AGG + tig0019847:152431-152450 None:intergenic 40.0%
ACGCATTACTAAGGAGTTGA+AGG - tig0019847:152435-152454 Msa1377100:intron 40.0%
TTGAAACAACAGGAATGGGT+GGG + tig0019847:152532-152551 None:intergenic 40.0%
ATTGAAACAACAGGAATGGG+TGG + tig0019847:152533-152552 None:intergenic 40.0%
!! CTTATGGTATTCTGGAGCAT+TGG - tig0019847:152598-152617 Msa1377100:intron 40.0%
! TGCATTCATATCAGGCATTG+AGG + tig0019847:152899-152918 None:intergenic 40.0%
ATCTCTCCAAATTCCACAGT+AGG + tig0019847:152945-152964 None:intergenic 40.0%
TACTGTGGAATTTGGAGAGA+TGG - tig0019847:152944-152963 Msa1377100:CDS 40.0%
ACTGTGGAATTTGGAGAGAT+GGG - tig0019847:152945-152964 Msa1377100:CDS 40.0%
GCATCTTGTCTGAACTGTAT+TGG - tig0019847:152969-152988 Msa1377100:CDS 40.0%
! CAAATCTAGGATCCTTATCG+AGG + tig0019847:153021-153040 None:intergenic 40.0%
! TTTTCTCCTCTTACTCTCGA+CGG + tig0019847:153066-153085 None:intergenic 40.0%
TGATTCACACGTACTGTTAG+AGG + tig0019847:153245-153264 None:intergenic 40.0%
TCTAACAGTACGTGTGAATC+AGG - tig0019847:153244-153263 Msa1377100:intron 40.0%
TCTCATGCTCTCACCTAAAA+TGG - tig0019847:153342-153361 Msa1377100:intron 40.0%
AAAGAAGCTTCAAGCGTACT+TGG + tig0019847:153420-153439 None:intergenic 40.0%
TTGGTGAAGACCTGTTTCAT+TGG - tig0019847:153495-153514 Msa1377100:intron 40.0%
! TAGTAGCTTGCCAATGAAAC+AGG + tig0019847:153508-153527 None:intergenic 40.0%
TCATTGGCAAGCTACTATCA+TGG - tig0019847:153511-153530 Msa1377100:intron 40.0%
CATTGGCAAGCTACTATCAT+GGG - tig0019847:153512-153531 Msa1377100:intron 40.0%
ATAATCTGGTGGGAAGTGAA+TGG + tig0019847:153579-153598 None:intergenic 40.0%
GGCTTAAATGGATAATCTGG+TGG + tig0019847:153590-153609 None:intergenic 40.0%
GGTGGCTTAAATGGATAATC+TGG + tig0019847:153593-153612 None:intergenic 40.0%
! GTTACCTTTGGTGGCTTAAA+TGG + tig0019847:153602-153621 None:intergenic 40.0%
TTTAATTGTGGTCTGTGTCC+CGG - tig0019847:153696-153715 Msa1377100:intron 40.0%
TTGACCTTAGCAATACATCC+GGG + tig0019847:153717-153736 None:intergenic 40.0%
AATATGTACTTGGGCTGATG+TGG - tig0019847:153815-153834 Msa1377100:intron 40.0%
GGCTGATGTGGATTTAATTG+TGG - tig0019847:153827-153846 Msa1377100:intron 40.0%
TTGTGGTCATGTTGTAGTTG+AGG - tig0019847:153844-153863 Msa1377100:intron 40.0%
AATCCATGTGACCACAATTG+AGG + tig0019847:153870-153889 None:intergenic 40.0%
AATGGCTAAACGCAATGACA+TGG + tig0019847:153988-154007 None:intergenic 40.0%
GTCAATGACATGAACCATGA+AGG + tig0019847:154070-154089 None:intergenic 40.0%
ATGTCATTGACATAGGCTGA+TGG - tig0019847:154079-154098 Msa1377100:intron 40.0%
TGTCATTGACATAGGCTGAT+GGG - tig0019847:154080-154099 Msa1377100:intron 40.0%
! TTCTCCCTTTTCTTGAGGAA+CGG - tig0019847:154245-154264 Msa1377100:intron 40.0%
AACTCCGTTCCTCAAGAAAA+GGG + tig0019847:154252-154271 None:intergenic 40.0%
! ATTCACAATGCGGCTTTTGT+AGG - tig0019847:154341-154360 Msa1377100:intron 40.0%
! GTGGAACACTTTTGTTCGAA+AGG + tig0019847:154370-154389 None:intergenic 40.0%
ACCCTAACATCAACAGCAAT+GGG - tig0019847:154388-154407 Msa1377100:intron 40.0%
! TCCCATTGCTGTTGATGTTA+GGG + tig0019847:154392-154411 None:intergenic 40.0%
! TTGACATTCTGAAAGAGCAG+TGG - tig0019847:154421-154440 Msa1377100:intron 40.0%
! GAAGGTACGATAATATGCCT+TGG - tig0019847:154464-154483 Msa1377100:intron 40.0%
GTACGATAATATGCCTTGGT+TGG - tig0019847:154468-154487 Msa1377100:intron 40.0%
TTGTACATGTGGGCAATATC+AGG + tig0019847:155000-155019 None:intergenic 40.0%
! CTTTGTCAGTCTTGTACATG+TGG + tig0019847:155011-155030 None:intergenic 40.0%
! ATATTTCTGAGTCCAAGACC+GGG + tig0019847:155052-155071 None:intergenic 40.0%
! CATATTTCTGAGTCCAAGAC+CGG + tig0019847:155053-155072 None:intergenic 40.0%
!!! GTTGTTTTTGGGATGCATGT+TGG - tig0019847:155164-155183 Msa1377100:intron 40.0%
GTCGGATAAAACTTGGTTGT+TGG + tig0019847:155259-155278 None:intergenic 40.0%
ACATGGTAGAAACTCGACTT+AGG + tig0019847:155423-155442 None:intergenic 40.0%
ACCCTAAGATTCCATCTCCA+AGG - tig0019847:151060-151079 Msa1377100:three_prime_UTR 45.0%
ATCGAAGCAAACCTTGGAGA+TGG + tig0019847:151074-151093 None:intergenic 45.0%
CTTTAGGCCTCCAAGTATGT+TGG - tig0019847:151874-151893 Msa1377100:intron 45.0%
GATGCCAAGACAACAAGAAC+AGG + tig0019847:151906-151925 None:intergenic 45.0%
!! TGGTTGAAGAGTGCTATCGA+TGG - tig0019847:151973-151992 Msa1377100:intron 45.0%
GGCCTCAAAACGCATTACTA+AGG - tig0019847:152426-152445 Msa1377100:intron 45.0%
GTCATCAGTGTTATCGACAG+CGG - tig0019847:152753-152772 Msa1377100:intron 45.0%
! GGCACCATATGTCGGATTTT+TGG + tig0019847:152783-152802 None:intergenic 45.0%
CATCACAAAATTGGCCATGG+CGG + tig0019847:152869-152888 None:intergenic 45.0%
! GCCATGGCCAATTTTGTGAT+GGG - tig0019847:152868-152887 Msa1377100:intron 45.0%
ACCCATCACAAAATTGGCCA+TGG + tig0019847:152872-152891 None:intergenic 45.0%
!! ATGGCCAATTTTGTGATGGG+TGG - tig0019847:152871-152890 Msa1377100:intron 45.0%
TCAGCACCTACTGTGGAATT+TGG - tig0019847:152936-152955 Msa1377100:CDS 45.0%
TACAAACCGTCGAGAGTAAG+AGG - tig0019847:153057-153076 Msa1377100:intron 45.0%
GAAACAGGTCTTCACCAACA+GGG + tig0019847:153493-153512 None:intergenic 45.0%
TGAAACAGGTCTTCACCAAC+AGG + tig0019847:153494-153513 None:intergenic 45.0%
AGGAATACACCACCAGCATA+AGG + tig0019847:153551-153570 None:intergenic 45.0%
TGTAGTTGAGGCCTCAATTG+TGG - tig0019847:153770-153789 Msa1377100:intron 45.0%
AGGCCTCAATTGTGGTAACA+TGG - tig0019847:153778-153797 Msa1377100:intron 45.0%
TGTAGTTGAGGCCTCAATTG+TGG - tig0019847:153770-153789 Msa1377100:intron 45.0%
CAACTCCGTTCCTCAAGAAA+AGG + tig0019847:154253-154272 None:intergenic 45.0%
! CTTTTCTTGAGGAACGGAGT+TGG - tig0019847:154251-154270 Msa1377100:intron 45.0%
! CATTGCTGTTGATGTTAGGG+TGG + tig0019847:154389-154408 None:intergenic 45.0%
CACCCTAACATCAACAGCAA+TGG - tig0019847:154387-154406 Msa1377100:intron 45.0%
! CTCCCATTGCTGTTGATGTT+AGG + tig0019847:154393-154412 None:intergenic 45.0%
TCCTGCTCTTACTGTTTCGA+AGG - tig0019847:154446-154465 Msa1377100:intron 45.0%
ACCTTCGAAACAGTAAGAGC+AGG + tig0019847:154450-154469 None:intergenic 45.0%
AACTGGGTAAAAGCTAGGCA+AGG + tig0019847:154784-154803 None:intergenic 45.0%
TCCAAACCCAGATGATCCTT+TGG - tig0019847:154972-154991 Msa1377100:intron 45.0%
ACCAAAGGATCATCTGGGTT+TGG + tig0019847:154976-154995 None:intergenic 45.0%
!! TTTAAAGAAATATTATATTT+GGG - tig0019847:151781-151800 Msa1377100:intron 5.0%
CAAGACAACAAGAACAGGGC+CGG + tig0019847:151901-151920 None:intergenic 50.0%
ATACCAGCACTGCAAGACAC+AGG + tig0019847:152478-152497 None:intergenic 50.0%
GAGAGAGAGAGACTGTGCAA+TGG + tig0019847:152506-152525 None:intergenic 50.0%
!! CTGCACAAAGTGGCGGATAA+CGG - tig0019847:152809-152828 Msa1377100:intron 50.0%
!!! GGATATCAGTGGCGGGTTTT+TGG - tig0019847:152839-152858 Msa1377100:intron 50.0%
! CGCCATGGCCAATTTTGTGA+TGG - tig0019847:152867-152886 Msa1377100:intron 50.0%
! GGTGCCACCCATCACAAAAT+TGG + tig0019847:152878-152897 None:intergenic 50.0%
TATACTCATGCAGGCCCTGT+TGG - tig0019847:153476-153495 Msa1377100:intron 50.0%
GCAAGCTACTATCATGGGAC+CGG - tig0019847:153517-153536 Msa1377100:intron 50.0%
GTGGGAAGTGAATGGTCACT+AGG + tig0019847:153571-153590 None:intergenic 50.0%
GTGTCCCGGATGTATTGCTA+AGG - tig0019847:153710-153729 Msa1377100:intron 50.0%
AAGGTCAAATGCGGCTGATG+TGG - tig0019847:153729-153748 Msa1377100:intron 50.0%
AGGCCTCAATTGTGGTCACA+TGG - tig0019847:153864-153883 Msa1377100:intron 50.0%
GCAGAGAGCAAATTGACAGC+AGG + tig0019847:154945-154964 None:intergenic 50.0%
CAGGCACCAAAGGATCATCT+GGG + tig0019847:154981-155000 None:intergenic 50.0%
TCAGGCACCAAAGGATCATC+TGG + tig0019847:154982-155001 None:intergenic 50.0%
TGGGCAATATCAGGCACCAA+AGG + tig0019847:154991-155010 None:intergenic 50.0%
CCAAGTATGAGACTACTGCC+CGG - tig0019847:155031-155050 Msa1377100:intron 50.0%
AAAGGGAGCGATGCGTTGTG+AGG + tig0019847:151019-151038 None:intergenic 55.0%
! CGGCCCTGTTCTTGTTGTCT+TGG - tig0019847:151899-151918 Msa1377100:intron 55.0%
CAGCACTGCAAGACACAGGA+GGG + tig0019847:152474-152493 None:intergenic 55.0%
! AGGATGGCGGCACCATATGT+CGG + tig0019847:152791-152810 None:intergenic 55.0%
! ATCCGCCACTTTGTGCAGGA+TGG + tig0019847:152807-152826 None:intergenic 55.0%
! CGTTATCCGCCACTTTGTGC+AGG + tig0019847:152811-152830 None:intergenic 55.0%
!! AAAGTGGCGGATAACGGCCA+TGG - tig0019847:152815-152834 Msa1377100:intron 55.0%
!!! GGGTTTTTGGCTTTCCGCCA+TGG - tig0019847:152852-152871 Msa1377100:intron 55.0%
CCAGCATAAGGACTGTCTGC+CGG + tig0019847:153539-153558 None:intergenic 55.0%
GCAGACAGTCCTTATGCTGG+TGG - tig0019847:153539-153558 Msa1377100:intron 55.0%
CCGGGCAGTAGTCTCATACT+TGG + tig0019847:155034-155053 None:intergenic 55.0%
ATGAGACTACTGCCCGGTCT+TGG - tig0019847:155037-155056 Msa1377100:intron 55.0%
GGCCTCCAAGTATGTTGGGC+CGG - tig0019847:151879-151898 Msa1377100:intron 60.0%
CCAGCACTGCAAGACACAGG+AGG + tig0019847:152475-152494 None:intergenic 60.0%
CCTCCTGTGTCTTGCAGTGC+TGG - tig0019847:152472-152491 Msa1377100:intron 60.0%
TGCCGCCATCCTGCACAAAG+TGG - tig0019847:152799-152818 Msa1377100:intron 60.0%
! CGCCACTTTGTGCAGGATGG+CGG + tig0019847:152804-152823 None:intergenic 60.0%
CGCCATCCTGCACAAAGTGG+CGG - tig0019847:152802-152821 Msa1377100:intron 60.0%
!! ACGGCCATGGCGGATATCAG+TGG - tig0019847:152828-152847 Msa1377100:intron 60.0%
!! GCCATGGCGGATATCAGTGG+CGG - tig0019847:152831-152850 Msa1377100:intron 60.0%
!! CCATGGCGGATATCAGTGGC+GGG - tig0019847:152832-152851 Msa1377100:intron 60.0%
AGTCGGGTCAGCACCTACTG+TGG - tig0019847:152929-152948 Msa1377100:CDS 60.0%
CCGGCAGACAGTCCTTATGC+TGG - tig0019847:153536-153555 Msa1377100:intron 60.0%
GGCCGGCCCAACATACTTGG+AGG + tig0019847:151884-151903 None:intergenic 65.0%
CAGGGCCGGCCCAACATACT+TGG + tig0019847:151887-151906 None:intergenic 65.0%
!! GTGGCGGATAACGGCCATGG+CGG - tig0019847:152818-152837 Msa1377100:intron 65.0%
CCCGCCACTGATATCCGCCA+TGG + tig0019847:152835-152854 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019847 gene 151000 155490 151000 ID=Msa1377100;Name=Msa1377100
tig0019847 mRNA 151000 155490 151000 ID=Msa1377100-mRNA-1;Parent=Msa1377100;Name=Msa1377100-mRNA-1;_AED=0.07;_eAED=0.07;_QI=93|1|1|1|0.75|0.6|5|407|148
tig0019847 exon 151000 151550 151000 ID=Msa1377100-mRNA-1:exon:5442;Parent=Msa1377100-mRNA-1
tig0019847 exon 152023 152127 152023 ID=Msa1377100-mRNA-1:exon:5441;Parent=Msa1377100-mRNA-1
tig0019847 exon 152874 153001 152874 ID=Msa1377100-mRNA-1:exon:5440;Parent=Msa1377100-mRNA-1
tig0019847 exon 153997 154077 153997 ID=Msa1377100-mRNA-1:exon:5439;Parent=Msa1377100-mRNA-1
tig0019847 exon 155409 155490 155409 ID=Msa1377100-mRNA-1:exon:5438;Parent=Msa1377100-mRNA-1
tig0019847 five_prime_UTR 155409 155490 155409 ID=Msa1377100-mRNA-1:five_prime_utr;Parent=Msa1377100-mRNA-1
tig0019847 five_prime_UTR 154067 154077 154067 ID=Msa1377100-mRNA-1:five_prime_utr;Parent=Msa1377100-mRNA-1
tig0019847 CDS 153997 154066 153997 ID=Msa1377100-mRNA-1:cds;Parent=Msa1377100-mRNA-1
tig0019847 CDS 152874 153001 152874 ID=Msa1377100-mRNA-1:cds;Parent=Msa1377100-mRNA-1
tig0019847 CDS 152023 152127 152023 ID=Msa1377100-mRNA-1:cds;Parent=Msa1377100-mRNA-1
tig0019847 CDS 151407 151550 151407 ID=Msa1377100-mRNA-1:cds;Parent=Msa1377100-mRNA-1
tig0019847 three_prime_UTR 151000 151406 151000 ID=Msa1377100-mRNA-1:three_prime_utr;Parent=Msa1377100-mRNA-1
Gene Sequence

>Msa1377100

ATGGCCTCAAAACGCATTACTAAGGAGTTGAAGGACTTGCAGAAAGACCCTCCTGTGTCTTGCAGTGCTGGCCCTGTTGGTGAAGACCTGTTTCATTGGCAAGCTACTATCATGGGACCGGCAGACAGTCCTTATGCTGGTGGTGTATTCCTAGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGGTTTCCTTTCGAACAAAAGTGTTCCACCCTAACATCAACAGCAATGGGAGTATCTGTCTTGACATTCTGAAAGAGCAGTGGAGTCCTGCTCTTACTGTTTCGAAGGTCCTGCTGTCAATTTGCTCTCTGCTGACAGATCCAAACCCAGATGATCCTTTGGTGCCTGATATTGCCCACATGTACAAGACTGACAAAGCCAAGTATGAGACTACTGCCCGGTCTTGGACTCAGAAATATGCGATGAACTAG
Protein sequence

>Msa1377100

MASKRITKELKDLQKDPPVSCSAGPVGEDLFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPDIAHMYKTDKAKYETTARSWTQKYAMN*