AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051230 MtrunA17_Chr1g0154011 100.000 148 0 0 1 148 1 148 1.22e-109 307
Msa0051230 MtrunA17_Chr7g0275361 92.568 148 11 0 1 148 1 148 4.04e-103 291
Msa0051230 MtrunA17_Chr3g0108261 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0051230 MtrunA17_Chr5g0432831 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0051230 MtrunA17_Chr8g0369311 90.541 148 14 0 1 148 57 204 9.57e-101 287
Msa0051230 MtrunA17_Chr4g0037011 88.514 148 17 0 1 148 1 148 5.46e-100 283
Msa0051230 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 1.48e-55 171
Msa0051230 MtrunA17_Chr2g0316201 48.252 143 74 0 4 146 8 150 9.30e-47 149
Msa0051230 MtrunA17_Chr2g0316211 47.887 142 74 0 5 146 9 150 1.13e-45 146
Msa0051230 MtrunA17_Chr8g0362321 46.575 146 73 1 2 142 5 150 1.92e-45 145
Msa0051230 MtrunA17_Chr4g0060351 45.890 146 74 1 2 142 5 150 1.08e-44 143
Msa0051230 MtrunA17_Chr3g0131871 49.306 144 71 2 5 146 6 149 6.49e-42 137
Msa0051230 MtrunA17_Chr1g0199951 44.776 134 72 2 3 135 43 175 3.06e-34 118
Msa0051230 MtrunA17_Chr3g0139901 40.816 147 83 3 5 147 7 153 3.16e-34 117
Msa0051230 MtrunA17_Chr4g0038891 42.969 128 73 0 4 131 35 162 3.61e-33 115
Msa0051230 MtrunA17_Chr5g0396451 41.406 128 75 0 4 131 35 162 1.48e-31 110
Msa0051230 MtrunA17_Chr4g0053191 38.158 152 87 2 1 145 4 155 9.06e-31 108
Msa0051230 MtrunA17_Chr5g0401831 34.868 152 92 2 1 145 4 155 1.46e-27 100
Msa0051230 MtrunA17_Chr5g0403591 36.765 136 83 2 5 139 33 166 3.29e-27 100
Msa0051230 MtrunA17_Chr4g0031181 34.815 135 74 2 15 135 18 152 1.54e-26 97.8
Msa0051230 MtrunA17_Chr8g0348701 34.959 123 78 2 26 146 25 147 3.25e-25 95.1
Msa0051230 MtrunA17_Chr7g0254701 34.965 143 93 0 4 146 13 155 3.46e-25 97.1
Msa0051230 MtrunA17_Chr8g0387131 38.182 110 66 2 39 146 38 147 2.68e-24 92.4
Msa0051230 MtrunA17_Chr2g0328001 33.333 144 82 2 15 144 18 161 4.99e-24 91.7
Msa0051230 MtrunA17_Chr4g0059291 33.333 123 80 2 26 146 25 147 1.98e-23 90.5
Msa0051230 MtrunA17_Chr8g0372391 40.777 103 59 2 1 102 15 116 1.70e-19 79.7
Msa0051230 MtrunA17_Chr4g0068301 34.188 117 71 3 2 114 11 125 1.23e-17 77.4
Msa0051230 MtrunA17_Chr5g0404931 37.864 103 62 2 1 102 15 116 1.99e-17 74.3
Msa0051230 MtrunA17_Chr8g0376111 36.066 122 68 3 4 115 43 164 5.46e-17 75.9
Msa0051230 MtrunA17_Chr8g0345331 34.188 117 68 3 4 115 8 120 3.95e-16 72.4
Msa0051230 MtrunA17_Chr7g0233631 36.066 122 68 3 4 115 38 159 4.33e-16 73.6
Msa0051230 MtrunA17_Chr7g0233611 36.066 122 68 3 4 115 38 159 9.45e-16 72.4
Msa0051230 MtrunA17_Chr7g0222941 30.081 123 76 3 3 115 90 212 3.67e-14 67.4
Msa0051230 MtrunA17_Chr4g0047301 28.667 150 94 4 4 143 672 818 3.23e-13 65.9
Msa0051230 MtrunA17_Chr4g0045101 32.787 122 72 3 4 115 37 158 3.84e-13 65.1
Msa0051230 MtrunA17_Chr2g0282211 27.815 151 96 4 3 143 681 828 7.99e-13 64.7
Msa0051230 MtrunA17_Chr1g0186291 29.293 99 56 2 43 140 30 115 1.41e-12 61.2
Msa0051230 MtrunA17_Chr8g0376201 29.787 141 88 4 3 133 192 331 6.91e-12 62.0
Msa0051230 MtrunA17_Chr2g0317631 29.268 123 77 3 3 115 306 428 8.49e-12 61.6
Msa0051230 MtrunA17_Chr1g0198021 27.642 123 79 3 3 115 137 259 2.23e-11 60.5
Msa0051230 MtrunA17_Chr1g0211131 32.609 92 52 3 34 115 853 944 6.01e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051230 AT1G64230.2 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa0051230 AT1G64230.1 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa0051230 AT5G53300.2 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0051230 AT5G53300.4 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0051230 AT5G53300.1 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0051230 AT5G41700.5 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0051230 AT5G41700.2 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0051230 AT5G41700.1 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0051230 AT4G27960.1 91.216 148 13 0 1 148 1 148 3.33e-102 289
Msa0051230 AT4G27960.2 91.216 148 13 0 1 148 31 178 1.39e-101 288
Msa0051230 AT3G08690.2 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa0051230 AT3G08690.1 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa0051230 AT5G56150.1 88.514 148 17 0 1 148 1 148 5.36e-100 283
Msa0051230 AT5G41700.4 89.933 149 14 1 1 148 1 149 1.05e-99 283
Msa0051230 AT1G64230.3 85.350 157 14 1 1 148 1 157 2.21e-98 280
Msa0051230 AT2G16740.1 85.714 147 21 0 1 147 1 147 9.44e-97 275
Msa0051230 AT1G64230.5 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa0051230 AT1G64230.4 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa0051230 AT3G08700.2 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa0051230 AT3G08700.1 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa0051230 AT5G41700.3 91.346 104 9 0 1 104 1 104 7.72e-70 207
Msa0051230 AT5G53300.3 88.991 109 10 1 1 107 1 109 6.15e-69 204
Msa0051230 AT5G56150.2 89.320 103 11 0 1 103 1 103 9.41e-68 201
Msa0051230 AT3G13550.1 48.276 145 75 0 2 146 37 181 2.66e-53 167
Msa0051230 AT1G16890.2 48.951 143 73 0 4 146 8 150 2.41e-47 150
Msa0051230 AT5G62540.1 51.880 133 64 0 2 134 5 137 9.41e-47 149
Msa0051230 AT1G78870.2 48.252 143 74 0 4 146 8 150 1.86e-46 148
Msa0051230 AT1G14400.1 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa0051230 AT1G14400.2 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa0051230 AT1G36340.2 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa0051230 AT1G36340.1 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa0051230 AT2G02760.1 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051230 AT2G02760.2 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051230 AT2G02760.4 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051230 AT2G02760.3 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051230 AT1G16890.3 46.711 152 72 1 4 146 8 159 1.42e-44 144
Msa0051230 AT3G13550.2 50.877 114 56 0 2 115 37 150 9.52e-43 139
Msa0051230 AT1G16890.1 52.174 115 55 0 32 146 3 117 8.86e-41 133
Msa0051230 AT1G78870.4 52.174 115 55 0 32 146 3 117 1.28e-40 132
Msa0051230 AT5G50870.1 46.528 144 75 2 5 146 6 149 6.01e-39 130
Msa0051230 AT1G78870.1 51.724 116 55 1 32 146 3 118 8.58e-39 128
Msa0051230 AT5G50870.2 43.226 155 75 3 5 146 6 160 1.61e-35 122
Msa0051230 AT3G24515.1 43.312 157 76 3 3 146 8 164 5.11e-35 125
Msa0051230 AT2G32790.1 47.333 150 70 4 2 146 30 175 1.36e-34 119
Msa0051230 AT5G25760.1 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa0051230 AT5G25760.2 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa0051230 AT3G24515.3 37.912 182 75 4 3 146 8 189 3.00e-32 119
Msa0051230 AT1G78870.3 46.667 105 56 0 4 108 8 112 4.20e-31 108
Msa0051230 AT3G57870.1 38.816 152 86 3 1 145 5 156 1.46e-30 108
Msa0051230 AT3G20060.1 41.406 128 75 0 4 131 39 166 2.51e-30 108
Msa0051230 AT1G50490.1 42.188 128 74 0 4 131 38 165 6.62e-30 107
Msa0051230 AT3G20060.2 42.017 119 67 1 13 131 5 121 1.11e-28 102
Msa0051230 AT2G46030.5 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa0051230 AT2G46030.1 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa0051230 AT2G46030.4 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa0051230 AT2G46030.2 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa0051230 AT2G46030.3 36.486 148 91 3 1 146 73 219 2.12e-27 102
Msa0051230 AT5G05080.2 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051230 AT5G05080.3 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051230 AT5G05080.1 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051230 AT5G05080.4 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051230 AT4G36800.2 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa0051230 AT4G36800.1 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa0051230 AT3G55380.1 36.296 135 72 2 15 135 19 153 8.44e-27 99.0
Msa0051230 AT1G63800.2 40.000 110 64 2 39 146 23 132 4.10e-25 94.7
Msa0051230 AT1G63800.1 40.000 110 64 2 39 146 38 147 4.43e-25 95.1
Msa0051230 AT5G41340.1 35.772 123 77 2 26 146 25 147 4.65e-25 95.1
Msa0051230 AT5G59300.1 34.028 144 81 2 15 144 18 161 1.48e-24 93.2
Msa0051230 AT3G46460.1 33.333 144 82 2 15 144 18 161 2.34e-24 92.8
Msa0051230 AT2G18600.1 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa0051230 AT2G18600.2 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa0051230 AT5G41340.2 38.462 104 62 2 45 146 9 112 2.30e-22 87.0
Msa0051230 AT3G17000.1 36.752 117 68 3 2 114 12 126 1.45e-19 83.2
Msa0051230 AT3G55380.2 28.402 169 73 3 15 135 19 187 2.36e-19 80.5
Msa0051230 AT1G75440.1 39.815 108 59 3 1 107 15 117 2.60e-18 77.0
Msa0051230 AT1G45050.1 38.835 103 61 2 1 102 15 116 9.46e-18 75.5
Msa0051230 AT5G42990.1 39.806 103 60 2 1 102 15 116 1.22e-17 75.1
Msa0051230 AT1G17280.9 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT1G17280.7 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT1G17280.6 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT1G17280.2 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT1G17280.5 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT1G17280.3 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT1G17280.1 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT1G17280.8 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051230 AT4G36410.1 37.037 108 62 3 1 107 15 117 5.73e-17 73.6
Msa0051230 AT5G50430.1 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa0051230 AT5G50430.2 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa0051230 AT3G46460.3 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa0051230 AT3G46460.2 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa0051230 AT1G17280.4 32.520 123 68 3 4 115 8 126 8.83e-16 72.0

Find 71 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACCTTTGGTGGCTTAAA+TGG 0.184645 1_2:+5327071 None:intergenic
AACCTTGGAGATGGAATCTT+AGG 0.258527 1_2:+5329608 None:intergenic
CTCCCATTGCTGTTGATGTT+AGG 0.317472 1_2:+5326280 None:intergenic
ATAAAACTTGGTTGTTGGTT+TGG 0.323051 1_2:+5325419 None:intergenic
GCGTCATTGTTCTATTATAT+AGG 0.361002 1_2:-5325362 Msa0051230:three_prime_UTR
TAAAACTTGGTTGTTGGTTT+GGG 0.363426 1_2:+5325420 None:intergenic
TTGTACATGTGGGCAATATC+AGG 0.375872 1_2:+5325673 None:intergenic
TCAGGCACCAAAGGATCATC+TGG 0.377413 1_2:+5325691 None:intergenic
CCTCCTGTGTCTTGCAGTGC+TGG 0.380892 1_2:-5328200 Msa0051230:intron
GGTGGCTTAAATGGATAATC+TGG 0.389530 1_2:+5327080 None:intergenic
TGATTTGAACATATAGATAA+TGG 0.409991 1_2:+5325273 None:intergenic
GTCGGATAAAACTTGGTTGT+TGG 0.415903 1_2:+5325414 None:intergenic
AAGTTCTGTTAGCGAGAGAA+AGG 0.423440 1_2:+5329636 None:intergenic
TGAAACAGGTCTTCACCAAC+AGG 0.427366 1_2:+5327179 None:intergenic
TCCCATTGCTGTTGATGTTA+GGG 0.427658 1_2:+5326281 None:intergenic
TAGTAGCTTGCCAATGAAAC+AGG 0.428793 1_2:+5327165 None:intergenic
ACATATAGATAATGGTATAT+AGG 0.430215 1_2:+5325281 None:intergenic
TACTAGATAGTTACCTTTGG+TGG 0.430453 1_2:+5327062 None:intergenic
TGATATAGTGATTAATATAG+TGG 0.434916 1_2:+5325336 None:intergenic
TCCAAACCCAGATGATCCTT+TGG 0.446078 1_2:-5325698 Msa0051230:CDS
ATTCCACTACATAAATTAAA+CGG 0.446686 1_2:-5325384 Msa0051230:three_prime_UTR
ATAAATGCTTGTGGTTCTAA+AGG 0.456889 1_2:-5325585 Msa0051230:three_prime_UTR
GGTATATAGGTTATGTAGTA+AGG 0.460900 1_2:+5325294 None:intergenic
ATGAGACTACTGCCCGGTCT+TGG 0.466598 1_2:-5325633 Msa0051230:CDS
ACCAAAGGATCATCTGGGTT+TGG 0.469354 1_2:+5325697 None:intergenic
TTGGTGAAGACCTGTTTCAT+TGG 0.470566 1_2:-5327175 Msa0051230:CDS
TCACTTAGTCGGATAAAACT+TGG 0.471898 1_2:+5325407 None:intergenic
ACGCATTACTAAGGAGTTGA+AGG 0.472891 1_2:-5328237 Msa0051230:CDS
ACCCTAACATCAACAGCAAT+GGG 0.488484 1_2:-5326282 Msa0051230:CDS
TCATTGGCAAGCTACTATCA+TGG 0.489308 1_2:-5327159 Msa0051230:CDS
CATATTTCTGAGTCCAAGAC+CGG 0.489374 1_2:+5325620 None:intergenic
CCGGGCAGTAGTCTCATACT+TGG 0.490655 1_2:+5325639 None:intergenic
GGCCTCAAAACGCATTACTA+AGG 0.503308 1_2:-5328246 Msa0051230:CDS
TTCATTAGGTTGAACTGCAA+TGG 0.505699 1_2:-5328267 Msa0051230:intron
ACGCCGTTTAATTTATGTAG+TGG 0.509779 1_2:+5325381 None:intergenic
TGTAGTGGAATTCACTTAGT+CGG 0.514363 1_2:+5325396 None:intergenic
AGGAATACACCACCAGCATA+AGG 0.516668 1_2:+5327122 None:intergenic
TATACTCATGCAGGCCCTGT+TGG 0.522486 1_2:-5327194 Msa0051230:intron
CTTTGTCAGTCTTGTACATG+TGG 0.533650 1_2:+5325662 None:intergenic
ACATGGTAGAAACTCGACTT+AGG 0.539690 1_2:+5325250 None:intergenic
TCCTGCTCTTACTGTTTCGA+AGG 0.541092 1_2:-5326224 Msa0051230:intron
ATCGAAGCAAACCTTGGAGA+TGG 0.543129 1_2:+5329599 None:intergenic
CACCCTAACATCAACAGCAA+TGG 0.544450 1_2:-5326283 Msa0051230:CDS
CATTGGCAAGCTACTATCAT+GGG 0.548045 1_2:-5327158 Msa0051230:CDS
GCAGAGAGCAAATTGACAGC+AGG 0.555230 1_2:+5325728 None:intergenic
GCAAGCTACTATCATGGGAC+CGG 0.562370 1_2:-5327153 Msa0051230:CDS
ACCTTGGAGATGGAATCTTA+GGG 0.563827 1_2:+5329609 None:intergenic
ACCCTAAGATTCCATCTCCA+AGG 0.564855 1_2:-5329610 Msa0051230:intron
AGTTCTGTTAGCGAGAGAAA+GGG 0.567493 1_2:+5329637 None:intergenic
GGCTTAAATGGATAATCTGG+TGG 0.570933 1_2:+5327083 None:intergenic
ACCTTCGAAACAGTAAGAGC+AGG 0.586563 1_2:+5326223 None:intergenic
CCGGCAGACAGTCCTTATGC+TGG 0.594140 1_2:-5327134 Msa0051230:CDS
AAAGGGAGCGATGCGTTGTG+AGG 0.599804 1_2:+5329654 None:intergenic
GTGGGAAGTGAATGGTCACT+AGG 0.600222 1_2:+5327102 None:intergenic
CCAGCATAAGGACTGTCTGC+CGG 0.604386 1_2:+5327134 None:intergenic
CATTGCTGTTGATGTTAGGG+TGG 0.612271 1_2:+5326284 None:intergenic
TGGGCAATATCAGGCACCAA+AGG 0.612823 1_2:+5325682 None:intergenic
TTATCCATTTAAGCCACCAA+AGG 0.622832 1_2:-5327075 Msa0051230:intron
GCAGACAGTCCTTATGCTGG+TGG 0.624021 1_2:-5327131 Msa0051230:CDS
ATAATCTGGTGGGAAGTGAA+TGG 0.636084 1_2:+5327094 None:intergenic
GCTTAAATGGATAATCTGGT+GGG 0.637843 1_2:+5327084 None:intergenic
CAGGCACCAAAGGATCATCT+GGG 0.640642 1_2:+5325692 None:intergenic
TTGACATTCTGAAAGAGCAG+TGG 0.642055 1_2:-5326249 Msa0051230:CDS
CCAAGTATGAGACTACTGCC+CGG 0.645693 1_2:-5325639 Msa0051230:CDS
TGAACTAGCATAAATGCTTG+TGG 0.646131 1_2:-5325594 Msa0051230:exon
TTTGTCAGTCTTGTACATGT+GGG 0.652799 1_2:+5325663 None:intergenic
ATACCAGCACTGCAAGACAC+AGG 0.653347 1_2:+5328197 None:intergenic
CCAGCACTGCAAGACACAGG+AGG 0.655706 1_2:+5328200 None:intergenic
ATATTTCTGAGTCCAAGACC+GGG 0.658098 1_2:+5325621 None:intergenic
CAGCACTGCAAGACACAGGA+GGG 0.671340 1_2:+5328201 None:intergenic
GAAACAGGTCTTCACCAACA+GGG 0.724000 1_2:+5327180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTTTATTATAAA+TGG - chr1_2:5325768-5325787 Msa0051230:intron 0.0%
!! GTTTAAAGAAATATTATATT+TGG - chr1_2:5325982-5326001 Msa0051230:intron 10.0%
!!! GATATTTTATAATATGATTA+CGG - chr1_2:5326025-5326044 Msa0051230:intron 10.0%
!!! ATATTTTATAATATGATTAC+GGG - chr1_2:5326026-5326045 Msa0051230:intron 10.0%
!! AAAATTAAAAACTATTTGAT+GGG - chr1_2:5327320-5327339 Msa0051230:intron 10.0%
!!! AAAATTTTGAAAAGGATTTT+AGG - chr1_2:5325503-5325522 Msa0051230:three_prime_UTR 15.0%
!!! AAATTTTGAAAAGGATTTTA+GGG - chr1_2:5325504-5325523 Msa0051230:three_prime_UTR 15.0%
!! TTATATTTCGTTATAATTGT+GGG - chr1_2:5326245-5326264 Msa0051230:CDS 15.0%
!! TTCACTTTAAATTAAGTAAA+TGG + chr1_2:5326402-5326421 None:intergenic 15.0%
!!! CATCAAATAGTTTTTAATTT+TGG + chr1_2:5327321-5327340 None:intergenic 15.0%
!! CAAAATTAAAAACTATTTGA+TGG - chr1_2:5327319-5327338 Msa0051230:intron 15.0%
!! TATAATATATAAAGATAACG+AGG + chr1_2:5327662-5327681 None:intergenic 15.0%
!! ATCTATACAACAAATATTAA+AGG + chr1_2:5328366-5328385 None:intergenic 15.0%
!!! TGTTTTGAAAATAATGTTTT+TGG - chr1_2:5328503-5328522 Msa0051230:intron 15.0%
!!! TATTTCATTTTCTATACTTT+TGG - chr1_2:5328885-5328904 Msa0051230:intron 15.0%
!!! TTTTGGTGAAAATTTTGAAA+AGG - chr1_2:5325495-5325514 Msa0051230:three_prime_UTR 20.0%
!! ATATAACATGTAACTTAAGT+CGG + chr1_2:5326231-5326250 None:intergenic 20.0%
!! GTTATATTTCGTTATAATTG+TGG - chr1_2:5326244-5326263 Msa0051230:CDS 20.0%
!! GAATTGAGTTATAAATAACA+TGG - chr1_2:5326419-5326438 Msa0051230:intron 20.0%
!! AGTTATAAATAACATGGAAT+GGG - chr1_2:5326425-5326444 Msa0051230:intron 20.0%
!! AACAGAATTAAGTTTATTAC+AGG + chr1_2:5326479-5326498 None:intergenic 20.0%
!!! AACTTAATTCTGTTTTGAAA+TGG - chr1_2:5326485-5326504 Msa0051230:intron 20.0%
!! TTTGTCTTAAATTGTTCATT+AGG - chr1_2:5326591-5326610 Msa0051230:intron 20.0%
!!! TAAGAACATGTTAACTTTTT+TGG + chr1_2:5326782-5326801 None:intergenic 20.0%
!! AAAAAGTTAACATGTTCTTA+TGG - chr1_2:5326782-5326801 Msa0051230:intron 20.0%
!! ATGATTCAACAAAGAAAATA+TGG + chr1_2:5326849-5326868 None:intergenic 20.0%
!! TTTATATATTATACTCATGC+AGG - chr1_2:5327669-5327688 Msa0051230:intron 20.0%
!!! ATATAATCATCTAAGATTCT+TGG - chr1_2:5327873-5327892 Msa0051230:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG - chr1_2:5328007-5328026 Msa0051230:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG - chr1_2:5328008-5328027 Msa0051230:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG - chr1_2:5328007-5328026 Msa0051230:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG - chr1_2:5328008-5328027 Msa0051230:intron 20.0%
!!! TTTAATTGTTCTTGTTTATC+TGG - chr1_2:5328159-5328178 Msa0051230:intron 20.0%
!!! TTAATTGTTCTTGTTTATCT+GGG - chr1_2:5328160-5328179 Msa0051230:intron 20.0%
!!! GAAAATAATGTTTTTGGTTT+AGG - chr1_2:5328509-5328528 Msa0051230:intron 20.0%
!!! TTTTTACTTCTGAATTAACT+TGG + chr1_2:5328826-5328845 None:intergenic 20.0%
!! AAACTATTGCTTAAAATCTA+TGG - chr1_2:5328844-5328863 Msa0051230:intron 20.0%
!!! AGTGAAAAAAATGTTGTTTT+TGG - chr1_2:5329354-5329373 Msa0051230:intron 20.0%
!!! GTGAAAAAAATGTTGTTTTT+GGG - chr1_2:5329355-5329374 Msa0051230:intron 20.0%
!! ATTCCACTACATAAATTAAA+CGG - chr1_2:5329488-5329507 Msa0051230:intron 20.0%
!! TGATATAGTGATTAATATAG+TGG + chr1_2:5329539-5329558 None:intergenic 20.0%
!!! ACATATAGATAATGGTATAT+AGG + chr1_2:5329594-5329613 None:intergenic 20.0%
!! TGATTTGAACATATAGATAA+TGG + chr1_2:5329602-5329621 None:intergenic 20.0%
!! GGAATAGAATTTTCATTCTA+GGG - chr1_2:5325370-5325389 Msa0051230:three_prime_UTR 25.0%
!!! ATTTTCATTCTAGGGTTTTT+AGG - chr1_2:5325378-5325397 Msa0051230:three_prime_UTR 25.0%
!!! TTTTCATTCTAGGGTTTTTA+GGG - chr1_2:5325379-5325398 Msa0051230:three_prime_UTR 25.0%
!!! TTTCTTGTTTTTCGATTTAC+TGG - chr1_2:5325426-5325445 Msa0051230:three_prime_UTR 25.0%
!! CTTGAGTTTCATCTAAATTT+TGG - chr1_2:5325478-5325497 Msa0051230:three_prime_UTR 25.0%
! ACATAGAAGGATAATAACAA+TGG + chr1_2:5325866-5325885 None:intergenic 25.0%
! AAATAATAAGGACACATAGA+AGG + chr1_2:5325879-5325898 None:intergenic 25.0%
! TATGTGTCCTTATTATTTGT+TGG - chr1_2:5325881-5325900 Msa0051230:intron 25.0%
!!! TTATATTTGGGTTGATATGT+TGG - chr1_2:5325995-5326014 Msa0051230:intron 25.0%
!!! TATATTTGGGTTGATATGTT+GGG - chr1_2:5325996-5326015 Msa0051230:intron 25.0%
! GAATTATTTCCTGAAGTATA+TGG - chr1_2:5326154-5326173 Msa0051230:intron 25.0%
! TATAACATGTAACTTAAGTC+GGG + chr1_2:5326230-5326249 None:intergenic 25.0%
! AATCAAACTTATTTGGTCAA+TGG + chr1_2:5326287-5326306 None:intergenic 25.0%
! ATTGACCAAATAAGTTTGAT+TGG - chr1_2:5326286-5326305 Msa0051230:CDS 25.0%
! ACTTTCCAATCAAACTTATT+TGG + chr1_2:5326294-5326313 None:intergenic 25.0%
! AAAGCATAACAAGAACATTA+CGG + chr1_2:5326334-5326353 None:intergenic 25.0%
! GAGTTATAAATAACATGGAA+TGG - chr1_2:5326424-5326443 Msa0051230:intron 25.0%
!!! TTAATTCTGTTTTGAAATGG+AGG - chr1_2:5326488-5326507 Msa0051230:intron 25.0%
!!! TAATTCTGTTTTGAAATGGA+GGG - chr1_2:5326489-5326508 Msa0051230:intron 25.0%
!! AACAATTTAAGACAAACTTC+AGG + chr1_2:5326587-5326606 None:intergenic 25.0%
! AATATTGAAACAACAGGAAT+GGG + chr1_2:5326736-5326755 None:intergenic 25.0%
! AAATATTGAAACAACAGGAA+TGG + chr1_2:5326737-5326756 None:intergenic 25.0%
!!! TTCTGAAATATTGAAACAAC+AGG + chr1_2:5326742-5326761 None:intergenic 25.0%
! ACAAATATTTGTAAAGAGGA+AGG + chr1_2:5326825-5326844 None:intergenic 25.0%
!!! TCTTTTGCCATTTTCAAATA+TGG - chr1_2:5326895-5326914 Msa0051230:intron 25.0%
!! TGTTTTATCTTGACTATTTG+TGG - chr1_2:5327374-5327393 Msa0051230:intron 25.0%
!! GTTTTATCTTGACTATTTGT+GGG - chr1_2:5327375-5327394 Msa0051230:intron 25.0%
! TTCCAATCAAACAATCATAT+AGG - chr1_2:5327497-5327516 Msa0051230:intron 25.0%
! TAACTATCTAGTAATGAGAT+GGG - chr1_2:5327820-5327839 Msa0051230:intron 25.0%
!!! AGATTCTTGGTTTTTAATTG+TGG - chr1_2:5327886-5327905 Msa0051230:intron 25.0%
! ACCATGTCTCAATATTAAAA+TGG + chr1_2:5328208-5328227 None:intergenic 25.0%
! ATCTCTTATATTCAAGTATC+TGG + chr1_2:5328312-5328331 None:intergenic 25.0%
! TGCTTAAATTATTCACAATG+CGG - chr1_2:5328533-5328552 Msa0051230:intron 25.0%
!!! ATGTTTGTGCTTTTTACTTA+TGG - chr1_2:5328728-5328747 Msa0051230:intron 25.0%
! TTATGGAAAAAAGTCTTGAT+AGG - chr1_2:5328745-5328764 Msa0051230:intron 25.0%
! GATAGGTATATTGATGTTTA+TGG - chr1_2:5328762-5328781 Msa0051230:intron 25.0%
!!! TTTACCCAGTTTTTTATACA+AGG - chr1_2:5328995-5329014 Msa0051230:intron 25.0%
!!! TTACCCAGTTTTTTATACAA+GGG - chr1_2:5328996-5329015 Msa0051230:intron 25.0%
! ATTACTTGAGAAGAATAAAG+TGG - chr1_2:5329036-5329055 Msa0051230:intron 25.0%
! TTACTTGAGAAGAATAAAGT+GGG - chr1_2:5329037-5329056 Msa0051230:intron 25.0%
! CTGAGGTAATTAAAAAATTC+TGG + chr1_2:5329068-5329087 None:intergenic 25.0%
!!! TTTCTACCATGTTTTTATGT+AGG - chr1_2:5329633-5329652 Msa0051230:five_prime_UTR 25.0%
AAAATCGAGTGAATCGAAAA+CGG + chr1_2:5325307-5325326 None:intergenic 30.0%
TTACACAAGGATAAACAGAA+GGG + chr1_2:5325332-5325351 None:intergenic 30.0%
! TAACGCTTACTTTGTTTGAT+CGG - chr1_2:5325349-5325368 Msa0051230:three_prime_UTR 30.0%
! CGGAATAGAATTTTCATTCT+AGG - chr1_2:5325369-5325388 Msa0051230:three_prime_UTR 30.0%
!! TGTTTTTCGATTTACTGGTT+TGG - chr1_2:5325431-5325450 Msa0051230:three_prime_UTR 30.0%
!!! GTTTTTCGATTTACTGGTTT+GGG - chr1_2:5325432-5325451 Msa0051230:three_prime_UTR 30.0%
!!! TAAGCACTTTTGAGATTGTT+TGG - chr1_2:5325625-5325644 Msa0051230:CDS 30.0%
!!! AAGCACTTTTGAGATTGTTT+GGG - chr1_2:5325626-5325645 Msa0051230:CDS 30.0%
ATTACGTTGTTTATCCTAAC+AGG - chr1_2:5325840-5325859 Msa0051230:intron 30.0%
CAAACGTCCAACAAATAATA+AGG + chr1_2:5325891-5325910 None:intergenic 30.0%
! TATTTGTTGGACGTTTGAAA+TGG - chr1_2:5325894-5325913 Msa0051230:intron 30.0%
!! CTTTTACATCAAGTTGCTTT+AGG - chr1_2:5326060-5326079 Msa0051230:intron 30.0%
!! CTTGTTATGTTTTTCCTTGT+TGG - chr1_2:5326132-5326151 Msa0051230:intron 30.0%
TTCAGGAAATAATTCCAACA+AGG + chr1_2:5326149-5326168 None:intergenic 30.0%
TATTTGGTCAATGGTCAATA+AGG + chr1_2:5326278-5326297 None:intergenic 30.0%
GAATTAAGTTTATTACAGGC+AGG + chr1_2:5326475-5326494 None:intergenic 30.0%
! TTAGTTCAGTTTTTGAATCG+AGG - chr1_2:5326559-5326578 Msa0051230:intron 30.0%
AACATGTTCTTATGGTATTC+TGG - chr1_2:5326790-5326809 Msa0051230:intron 30.0%
TGGCACAAATATTTGTAAAG+AGG + chr1_2:5326829-5326848 None:intergenic 30.0%
AAATGGGCCATATTTGAAAA+TGG + chr1_2:5326905-5326924 None:intergenic 30.0%
! ATATGGCCCATTTTCAAATA+TGG - chr1_2:5326912-5326931 Msa0051230:intron 30.0%
AGCAAGCCATATTTGAAAAT+GGG + chr1_2:5326921-5326940 None:intergenic 30.0%
TAGCAAGCCATATTTGAAAA+TGG + chr1_2:5326922-5326941 None:intergenic 30.0%
GGGTCACATAATTGTATAAA+AGG - chr1_2:5327340-5327359 Msa0051230:intron 30.0%
CTTCTCGCATACTTAAAAAT+AGG - chr1_2:5327420-5327439 Msa0051230:intron 30.0%
GTCCTATATGATTGTTTGAT+TGG + chr1_2:5327502-5327521 None:intergenic 30.0%
!! GACTATATAGTAGCCATTTT+AGG + chr1_2:5327560-5327579 None:intergenic 30.0%
! GAAGCTTCTTTTCTATGTAT+AGG - chr1_2:5327631-5327650 Msa0051230:intron 30.0%
CATTACTAGATAGTTACCTT+TGG + chr1_2:5327816-5327835 None:intergenic 30.0%
GTAACTATCTAGTAATGAGA+TGG - chr1_2:5327819-5327838 Msa0051230:intron 30.0%
!! GCCATTTTAATATTGAGACA+TGG - chr1_2:5328204-5328223 Msa0051230:CDS 30.0%
GATATTTATAGCATGCTTGT+AGG - chr1_2:5328383-5328402 Msa0051230:intron 30.0%
ATGTTTATGGAGAAGTTGAA+TGG - chr1_2:5328775-5328794 Msa0051230:intron 30.0%
!!! AGTTTTTTCTAGTTAGCTGT+TGG - chr1_2:5328924-5328943 Msa0051230:intron 30.0%
TAAAAAACTGGGTAAAAGCT+AGG + chr1_2:5328991-5329010 None:intergenic 30.0%
CTTCCCTTGTATAAAAAACT+GGG + chr1_2:5329002-5329021 None:intergenic 30.0%
ACTTCCCTTGTATAAAAAAC+TGG + chr1_2:5329003-5329022 None:intergenic 30.0%
TCTACTGTAATAATCAACTG+AGG + chr1_2:5329085-5329104 None:intergenic 30.0%
ATTATTACAGTAGACAGTTG+TGG - chr1_2:5329091-5329110 Msa0051230:intron 30.0%
!! ATAAATGCTTGTGGTTCTAA+AGG - chr1_2:5329287-5329306 Msa0051230:intron 30.0%
! TCCTGTGAAAAACATGTTTT+GGG - chr1_2:5329312-5329331 Msa0051230:intron 30.0%
!! TAAAACTTGGTTGTTGGTTT+GGG + chr1_2:5329455-5329474 None:intergenic 30.0%
! ATAAAACTTGGTTGTTGGTT+TGG + chr1_2:5329456-5329475 None:intergenic 30.0%
GCGTCATTGTTCTATTATAT+AGG - chr1_2:5329510-5329529 Msa0051230:intron 30.0%
GGTATATAGGTTATGTAGTA+AGG + chr1_2:5329581-5329600 None:intergenic 30.0%
GTAGTACCTACATAAAAACA+TGG + chr1_2:5329642-5329661 None:intergenic 30.0%
GTTACACAAGGATAAACAGA+AGG + chr1_2:5325333-5325352 None:intergenic 35.0%
AACAAAGTAAGCGTTACACA+AGG + chr1_2:5325345-5325364 None:intergenic 35.0%
ACTTGTTTGAGCTTATCTAC+TGG - chr1_2:5325600-5325619 Msa0051230:exon 35.0%
GATAATAACAATGGCCTGTT+AGG + chr1_2:5325857-5325876 None:intergenic 35.0%
ACTCTTCAACCATATACTTC+AGG + chr1_2:5326166-5326185 None:intergenic 35.0%
!! CATGGAATGGGAGTATTATT+TGG - chr1_2:5326437-5326456 Msa0051230:intron 35.0%
!! TTCATTAGGTTGAACTGCAA+TGG - chr1_2:5326605-5326624 Msa0051230:intron 35.0%
AAAGCCAAAAATCCGACATA+TGG - chr1_2:5326976-5326995 Msa0051230:intron 35.0%
CGCAATAATGCATTCATATC+AGG + chr1_2:5327107-5327126 None:intergenic 35.0%
GAATGCATTATTGCGAAAGT+CGG - chr1_2:5327112-5327131 Msa0051230:CDS 35.0%
AATGCATTATTGCGAAAGTC+GGG - chr1_2:5327113-5327132 Msa0051230:CDS 35.0%
CATCTTGTCTGAACTGTATT+GGG - chr1_2:5327170-5327189 Msa0051230:CDS 35.0%
GATTTATTGCAACCTCGATA+AGG - chr1_2:5327206-5327225 Msa0051230:intron 35.0%
GATAAGGATCCTAGATTTGA+TGG - chr1_2:5327222-5327241 Msa0051230:intron 35.0%
ATCTACTGTCCATCAAATCT+AGG + chr1_2:5327234-5327253 None:intergenic 35.0%
! TGAGAGCATGATTTGATACA+AGG - chr1_2:5327468-5327487 Msa0051230:intron 35.0%
GCTTAAATGGATAATCTGGT+GGG + chr1_2:5327791-5327810 None:intergenic 35.0%
TTATCCATTTAAGCCACCAA+AGG - chr1_2:5327797-5327816 Msa0051230:intron 35.0%
TACTAGATAGTTACCTTTGG+TGG + chr1_2:5327813-5327832 None:intergenic 35.0%
TTTGACCTTAGCAATACATC+CGG + chr1_2:5327920-5327939 None:intergenic 35.0%
TGTATTGCTAAGGTCAAATG+CGG - chr1_2:5327922-5327941 Msa0051230:intron 35.0%
TTGTTGTCATGATGTAGTTG+AGG - chr1_2:5327960-5327979 Msa0051230:intron 35.0%
AATCCATGTTACCACAATTG+AGG + chr1_2:5327986-5328005 None:intergenic 35.0%
ATATCAAAGCAGAACCTTCA+TGG - chr1_2:5328255-5328274 Msa0051230:exon 35.0%
ATGGTTCATGTCATTGACAT+AGG - chr1_2:5328274-5328293 Msa0051230:intron 35.0%
! ATCTTTTCTCCCTTTTCTTG+AGG - chr1_2:5328442-5328461 Msa0051230:intron 35.0%
TACGATAATATGCCTTGGTT+GGG - chr1_2:5328671-5328690 Msa0051230:intron 35.0%
CAATAAGTTAATCCCAACCA+AGG + chr1_2:5328686-5328705 None:intergenic 35.0%
TTATGGAGAAGTTGAATGGT+AGG - chr1_2:5328779-5328798 Msa0051230:intron 35.0%
TATGGAGAAGTTGAATGGTA+GGG - chr1_2:5328780-5328799 Msa0051230:intron 35.0%
GATTTATCTTGTATTGCTGC+AGG - chr1_2:5329120-5329139 Msa0051230:intron 35.0%
! TTTGTCAGTCTTGTACATGT+GGG + chr1_2:5329212-5329231 None:intergenic 35.0%
TGAACTAGCATAAATGCTTG+TGG - chr1_2:5329278-5329297 Msa0051230:intron 35.0%
! CTCCTGTGAAAAACATGTTT+TGG - chr1_2:5329311-5329330 Msa0051230:intron 35.0%
! TCCCAAAACATGTTTTTCAC+AGG + chr1_2:5329316-5329335 None:intergenic 35.0%
!!! AACATGTTTTGGGATGCAAA+AGG - chr1_2:5329322-5329341 Msa0051230:intron 35.0%
TCACTTAGTCGGATAAAACT+TGG + chr1_2:5329468-5329487 None:intergenic 35.0%
! TGTAGTGGAATTCACTTAGT+CGG + chr1_2:5329479-5329498 None:intergenic 35.0%
! ACGCCGTTTAATTTATGTAG+TGG + chr1_2:5329494-5329513 None:intergenic 35.0%
AGTTCTGTTAGCGAGAGAAA+GGG + chr1_2:5325238-5325257 None:intergenic 40.0%
AAGTTCTGTTAGCGAGAGAA+AGG + chr1_2:5325239-5325258 None:intergenic 40.0%
ACCTTGGAGATGGAATCTTA+GGG + chr1_2:5325266-5325285 None:intergenic 40.0%
AACCTTGGAGATGGAATCTT+AGG + chr1_2:5325267-5325286 None:intergenic 40.0%
GAAGAAATCGAAGCAAACCT+TGG + chr1_2:5325282-5325301 None:intergenic 40.0%
GTTGCTTGTGTTAGAGCTTA+CGG - chr1_2:5325564-5325583 Msa0051230:three_prime_UTR 40.0%
! GTTAGAGCTTACGGTTTGTT+TGG - chr1_2:5325573-5325592 Msa0051230:three_prime_UTR 40.0%
!! TTGGGTTGATATGTTGGGAT+TGG - chr1_2:5326001-5326020 Msa0051230:intron 40.0%
TTTAGGCCTCCAAGTATGTT+GGG - chr1_2:5326077-5326096 Msa0051230:intron 40.0%
ATGCCAAGACAACAAGAACA+GGG + chr1_2:5326107-5326126 None:intergenic 40.0%
TATTACAGGCAGGCAGTAAA+AGG + chr1_2:5326465-5326484 None:intergenic 40.0%
!!! CTGTTTTGAAATGGAGGGAT+AGG - chr1_2:5326494-5326513 Msa0051230:intron 40.0%
! CTCCTTAGTAATGCGTTTTG+AGG + chr1_2:5326631-5326650 None:intergenic 40.0%
ACGCATTACTAAGGAGTTGA+AGG - chr1_2:5326635-5326654 Msa0051230:intron 40.0%
TTGAAACAACAGGAATGGGT+GGG + chr1_2:5326732-5326751 None:intergenic 40.0%
ATTGAAACAACAGGAATGGG+TGG + chr1_2:5326733-5326752 None:intergenic 40.0%
!! CTTATGGTATTCTGGAGCAT+TGG - chr1_2:5326798-5326817 Msa0051230:intron 40.0%
! TGCATTCATATCAGGCATTG+AGG + chr1_2:5327099-5327118 None:intergenic 40.0%
ATCTCTCCAAATTCCACAGT+AGG + chr1_2:5327145-5327164 None:intergenic 40.0%
TACTGTGGAATTTGGAGAGA+TGG - chr1_2:5327144-5327163 Msa0051230:CDS 40.0%
ACTGTGGAATTTGGAGAGAT+GGG - chr1_2:5327145-5327164 Msa0051230:CDS 40.0%
GCATCTTGTCTGAACTGTAT+TGG - chr1_2:5327169-5327188 Msa0051230:CDS 40.0%
! CAAATCTAGGATCCTTATCG+AGG + chr1_2:5327221-5327240 None:intergenic 40.0%
! TTTTCTCCTCTTACTCTCGA+CGG + chr1_2:5327266-5327285 None:intergenic 40.0%
TGATTCACACGTACTGTTAG+AGG + chr1_2:5327446-5327465 None:intergenic 40.0%
TCTAACAGTACGTGTGAATC+AGG - chr1_2:5327445-5327464 Msa0051230:intron 40.0%
TCTCATGCTCTCACCTAAAA+TGG - chr1_2:5327544-5327563 Msa0051230:intron 40.0%
AAAGAAGCTTCAAGCGTACT+TGG + chr1_2:5327622-5327641 None:intergenic 40.0%
TTGGTGAAGACCTGTTTCAT+TGG - chr1_2:5327697-5327716 Msa0051230:intron 40.0%
! TAGTAGCTTGCCAATGAAAC+AGG + chr1_2:5327710-5327729 None:intergenic 40.0%
TCATTGGCAAGCTACTATCA+TGG - chr1_2:5327713-5327732 Msa0051230:intron 40.0%
CATTGGCAAGCTACTATCAT+GGG - chr1_2:5327714-5327733 Msa0051230:intron 40.0%
ATAATCTGGTGGGAAGTGAA+TGG + chr1_2:5327781-5327800 None:intergenic 40.0%
GGCTTAAATGGATAATCTGG+TGG + chr1_2:5327792-5327811 None:intergenic 40.0%
GGTGGCTTAAATGGATAATC+TGG + chr1_2:5327795-5327814 None:intergenic 40.0%
! GTTACCTTTGGTGGCTTAAA+TGG + chr1_2:5327804-5327823 None:intergenic 40.0%
TTTAATTGTGGTCTGTGTCC+CGG - chr1_2:5327898-5327917 Msa0051230:intron 40.0%
TTGACCTTAGCAATACATCC+GGG + chr1_2:5327919-5327938 None:intergenic 40.0%
AATATGTACTTGGGCTGATG+TGG - chr1_2:5328017-5328036 Msa0051230:intron 40.0%
GGCTGATGTGGATTTAATTG+TGG - chr1_2:5328029-5328048 Msa0051230:intron 40.0%
TTGTGGTCATGTTGTAGTTG+AGG - chr1_2:5328046-5328065 Msa0051230:intron 40.0%
AATCCATGTGACCACAATTG+AGG + chr1_2:5328072-5328091 None:intergenic 40.0%
AATGGCTAAACGCAATGACA+TGG + chr1_2:5328190-5328209 None:intergenic 40.0%
GTCAATGACATGAACCATGA+AGG + chr1_2:5328272-5328291 None:intergenic 40.0%
ATGTCATTGACATAGGCTGA+TGG - chr1_2:5328281-5328300 Msa0051230:intron 40.0%
TGTCATTGACATAGGCTGAT+GGG - chr1_2:5328282-5328301 Msa0051230:intron 40.0%
! TTCTCCCTTTTCTTGAGGAA+CGG - chr1_2:5328447-5328466 Msa0051230:intron 40.0%
AACTCCGTTCCTCAAGAAAA+GGG + chr1_2:5328454-5328473 None:intergenic 40.0%
! ATTCACAATGCGGCTTTTGT+AGG - chr1_2:5328543-5328562 Msa0051230:intron 40.0%
! GTGGAACACTTTTGTTCGAA+AGG + chr1_2:5328572-5328591 None:intergenic 40.0%
ACCCTAACATCAACAGCAAT+GGG - chr1_2:5328590-5328609 Msa0051230:intron 40.0%
! TCCCATTGCTGTTGATGTTA+GGG + chr1_2:5328594-5328613 None:intergenic 40.0%
! TTGACATTCTGAAAGAGCAG+TGG - chr1_2:5328623-5328642 Msa0051230:intron 40.0%
! GAAGGTACGATAATATGCCT+TGG - chr1_2:5328666-5328685 Msa0051230:intron 40.0%
GTACGATAATATGCCTTGGT+TGG - chr1_2:5328670-5328689 Msa0051230:intron 40.0%
TTGTACATGTGGGCAATATC+AGG + chr1_2:5329202-5329221 None:intergenic 40.0%
! CTTTGTCAGTCTTGTACATG+TGG + chr1_2:5329213-5329232 None:intergenic 40.0%
! ATATTTCTGAGTCCAAGACC+GGG + chr1_2:5329254-5329273 None:intergenic 40.0%
! CATATTTCTGAGTCCAAGAC+CGG + chr1_2:5329255-5329274 None:intergenic 40.0%
!!! GTTGTTTTTGGGATGCATGT+TGG - chr1_2:5329366-5329385 Msa0051230:intron 40.0%
GTCGGATAAAACTTGGTTGT+TGG + chr1_2:5329461-5329480 None:intergenic 40.0%
ACATGGTAGAAACTCGACTT+AGG + chr1_2:5329625-5329644 None:intergenic 40.0%
ACCCTAAGATTCCATCTCCA+AGG - chr1_2:5325262-5325281 Msa0051230:three_prime_UTR 45.0%
ATCGAAGCAAACCTTGGAGA+TGG + chr1_2:5325276-5325295 None:intergenic 45.0%
CTTTAGGCCTCCAAGTATGT+TGG - chr1_2:5326076-5326095 Msa0051230:intron 45.0%
GATGCCAAGACAACAAGAAC+AGG + chr1_2:5326108-5326127 None:intergenic 45.0%
!! ATGGTTGAAGAGTGCTATCG+AGG - chr1_2:5326173-5326192 Msa0051230:intron 45.0%
AGGCATCAACACACTCTCAT+TGG - chr1_2:5326196-5326215 Msa0051230:intron 45.0%
GGCCTCAAAACGCATTACTA+AGG - chr1_2:5326626-5326645 Msa0051230:intron 45.0%
GTCATCAGTGTTATCGACAG+CGG - chr1_2:5326953-5326972 Msa0051230:intron 45.0%
! GGCACCATATGTCGGATTTT+TGG + chr1_2:5326983-5327002 None:intergenic 45.0%
CATCACAAAATTGGCCATGG+CGG + chr1_2:5327069-5327088 None:intergenic 45.0%
! GCCATGGCCAATTTTGTGAT+GGG - chr1_2:5327068-5327087 Msa0051230:intron 45.0%
ACCCATCACAAAATTGGCCA+TGG + chr1_2:5327072-5327091 None:intergenic 45.0%
!! ATGGCCAATTTTGTGATGGG+TGG - chr1_2:5327071-5327090 Msa0051230:intron 45.0%
TCAGCACCTACTGTGGAATT+TGG - chr1_2:5327136-5327155 Msa0051230:CDS 45.0%
TACAAACCGTCGAGAGTAAG+AGG - chr1_2:5327257-5327276 Msa0051230:intron 45.0%
GAAACAGGTCTTCACCAACA+GGG + chr1_2:5327695-5327714 None:intergenic 45.0%
TGAAACAGGTCTTCACCAAC+AGG + chr1_2:5327696-5327715 None:intergenic 45.0%
AGGAATACACCACCAGCATA+AGG + chr1_2:5327753-5327772 None:intergenic 45.0%
TGTAGTTGAGGCCTCAATTG+TGG - chr1_2:5327972-5327991 Msa0051230:intron 45.0%
AGGCCTCAATTGTGGTAACA+TGG - chr1_2:5327980-5327999 Msa0051230:intron 45.0%
TGTAGTTGAGGCCTCAATTG+TGG - chr1_2:5327972-5327991 Msa0051230:intron 45.0%
CAACTCCGTTCCTCAAGAAA+AGG + chr1_2:5328455-5328474 None:intergenic 45.0%
! CTTTTCTTGAGGAACGGAGT+TGG - chr1_2:5328453-5328472 Msa0051230:intron 45.0%
! CATTGCTGTTGATGTTAGGG+TGG + chr1_2:5328591-5328610 None:intergenic 45.0%
CACCCTAACATCAACAGCAA+TGG - chr1_2:5328589-5328608 Msa0051230:intron 45.0%
! CTCCCATTGCTGTTGATGTT+AGG + chr1_2:5328595-5328614 None:intergenic 45.0%
TCCTGCTCTTACTGTTTCGA+AGG - chr1_2:5328648-5328667 Msa0051230:intron 45.0%
ACCTTCGAAACAGTAAGAGC+AGG + chr1_2:5328652-5328671 None:intergenic 45.0%
AACTGGGTAAAAGCTAGGCA+AGG + chr1_2:5328986-5329005 None:intergenic 45.0%
TCCAAACCCAGATGATCCTT+TGG - chr1_2:5329174-5329193 Msa0051230:intron 45.0%
ACCAAAGGATCATCTGGGTT+TGG + chr1_2:5329178-5329197 None:intergenic 45.0%
!! TTTAAAGAAATATTATATTT+GGG - chr1_2:5325983-5326002 Msa0051230:intron 5.0%
CAAGACAACAAGAACAGGGC+CGG + chr1_2:5326103-5326122 None:intergenic 50.0%
!! GTTGAAGAGTGCTATCGAGG+AGG - chr1_2:5326176-5326195 Msa0051230:intron 50.0%
ATACCAGCACTGCAAGACAC+AGG + chr1_2:5326678-5326697 None:intergenic 50.0%
GAGAGAGAGAGACTGTGCAA+TGG + chr1_2:5326706-5326725 None:intergenic 50.0%
!! CTGCACAAAGTGGCGGATAA+CGG - chr1_2:5327009-5327028 Msa0051230:intron 50.0%
!!! GGATATCAGTGGCGGGTTTT+TGG - chr1_2:5327039-5327058 Msa0051230:intron 50.0%
! CGCCATGGCCAATTTTGTGA+TGG - chr1_2:5327067-5327086 Msa0051230:intron 50.0%
! GGTGCCACCCATCACAAAAT+TGG + chr1_2:5327078-5327097 None:intergenic 50.0%
TATACTCATGCAGGCCCTGT+TGG - chr1_2:5327678-5327697 Msa0051230:intron 50.0%
GCAAGCTACTATCATGGGAC+CGG - chr1_2:5327719-5327738 Msa0051230:intron 50.0%
GTGGGAAGTGAATGGTCACT+AGG + chr1_2:5327773-5327792 None:intergenic 50.0%
GTGTCCCGGATGTATTGCTA+AGG - chr1_2:5327912-5327931 Msa0051230:intron 50.0%
AAGGTCAAATGCGGCTGATG+TGG - chr1_2:5327931-5327950 Msa0051230:intron 50.0%
AGGCCTCAATTGTGGTCACA+TGG - chr1_2:5328066-5328085 Msa0051230:intron 50.0%
GCAGAGAGCAAATTGACAGC+AGG + chr1_2:5329147-5329166 None:intergenic 50.0%
CAGGCACCAAAGGATCATCT+GGG + chr1_2:5329183-5329202 None:intergenic 50.0%
TCAGGCACCAAAGGATCATC+TGG + chr1_2:5329184-5329203 None:intergenic 50.0%
TGGGCAATATCAGGCACCAA+AGG + chr1_2:5329193-5329212 None:intergenic 50.0%
CCAAGTATGAGACTACTGCC+CGG - chr1_2:5329233-5329252 Msa0051230:intron 50.0%
AAAGGGAGCGATGCGTTGTG+AGG + chr1_2:5325221-5325240 None:intergenic 55.0%
! CGGCCCTGTTCTTGTTGTCT+TGG - chr1_2:5326101-5326120 Msa0051230:intron 55.0%
CAGCACTGCAAGACACAGGA+GGG + chr1_2:5326674-5326693 None:intergenic 55.0%
! AGGATGGCGGCACCATATGT+CGG + chr1_2:5326991-5327010 None:intergenic 55.0%
! ATCCGCCACTTTGTGCAGGA+TGG + chr1_2:5327007-5327026 None:intergenic 55.0%
! CGTTATCCGCCACTTTGTGC+AGG + chr1_2:5327011-5327030 None:intergenic 55.0%
!! AAAGTGGCGGATAACGGCCA+TGG - chr1_2:5327015-5327034 Msa0051230:intron 55.0%
!!! GGGTTTTTGGCTTTCCGCCA+TGG - chr1_2:5327052-5327071 Msa0051230:intron 55.0%
CCAGCATAAGGACTGTCTGC+CGG + chr1_2:5327741-5327760 None:intergenic 55.0%
GCAGACAGTCCTTATGCTGG+TGG - chr1_2:5327741-5327760 Msa0051230:intron 55.0%
CCGGGCAGTAGTCTCATACT+TGG + chr1_2:5329236-5329255 None:intergenic 55.0%
ATGAGACTACTGCCCGGTCT+TGG - chr1_2:5329239-5329258 Msa0051230:intron 55.0%
GGCCTCCAAGTATGTTGGGC+CGG - chr1_2:5326081-5326100 Msa0051230:intron 60.0%
CCAGCACTGCAAGACACAGG+AGG + chr1_2:5326675-5326694 None:intergenic 60.0%
CCTCCTGTGTCTTGCAGTGC+TGG - chr1_2:5326672-5326691 Msa0051230:intron 60.0%
TGCCGCCATCCTGCACAAAG+TGG - chr1_2:5326999-5327018 Msa0051230:intron 60.0%
! CGCCACTTTGTGCAGGATGG+CGG + chr1_2:5327004-5327023 None:intergenic 60.0%
CGCCATCCTGCACAAAGTGG+CGG - chr1_2:5327002-5327021 Msa0051230:intron 60.0%
!! ACGGCCATGGCGGATATCAG+TGG - chr1_2:5327028-5327047 Msa0051230:intron 60.0%
!! GCCATGGCGGATATCAGTGG+CGG - chr1_2:5327031-5327050 Msa0051230:intron 60.0%
!! CCATGGCGGATATCAGTGGC+GGG - chr1_2:5327032-5327051 Msa0051230:intron 60.0%
AGTCGGGTCAGCACCTACTG+TGG - chr1_2:5327129-5327148 Msa0051230:CDS 60.0%
CCGGCAGACAGTCCTTATGC+TGG - chr1_2:5327738-5327757 Msa0051230:intron 60.0%
GGCCGGCCCAACATACTTGG+AGG + chr1_2:5326086-5326105 None:intergenic 65.0%
CAGGGCCGGCCCAACATACT+TGG + chr1_2:5326089-5326108 None:intergenic 65.0%
!! GTGGCGGATAACGGCCATGG+CGG - chr1_2:5327018-5327037 Msa0051230:intron 65.0%
CCCGCCACTGATATCCGCCA+TGG + chr1_2:5327035-5327054 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5325202 5329692 5325202 ID=Msa0051230;Name=Msa0051230
chr1_2 mRNA 5325202 5329692 5325202 ID=Msa0051230-mRNA-1;Parent=Msa0051230;Name=Msa0051230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=93|1|1|1|0.75|0.6|5|407|148
chr1_2 exon 5325202 5325752 5325202 ID=Msa0051230-mRNA-1:exon:1548;Parent=Msa0051230-mRNA-1
chr1_2 exon 5326225 5326329 5326225 ID=Msa0051230-mRNA-1:exon:1547;Parent=Msa0051230-mRNA-1
chr1_2 exon 5327076 5327203 5327076 ID=Msa0051230-mRNA-1:exon:1546;Parent=Msa0051230-mRNA-1
chr1_2 exon 5328201 5328281 5328201 ID=Msa0051230-mRNA-1:exon:1545;Parent=Msa0051230-mRNA-1
chr1_2 exon 5329611 5329692 5329611 ID=Msa0051230-mRNA-1:exon:1544;Parent=Msa0051230-mRNA-1
chr1_2 five_prime_UTR 5329611 5329692 5329611 ID=Msa0051230-mRNA-1:five_prime_utr;Parent=Msa0051230-mRNA-1
chr1_2 five_prime_UTR 5328271 5328281 5328271 ID=Msa0051230-mRNA-1:five_prime_utr;Parent=Msa0051230-mRNA-1
chr1_2 CDS 5328201 5328270 5328201 ID=Msa0051230-mRNA-1:cds;Parent=Msa0051230-mRNA-1
chr1_2 CDS 5327076 5327203 5327076 ID=Msa0051230-mRNA-1:cds;Parent=Msa0051230-mRNA-1
chr1_2 CDS 5326225 5326329 5326225 ID=Msa0051230-mRNA-1:cds;Parent=Msa0051230-mRNA-1
chr1_2 CDS 5325609 5325752 5325609 ID=Msa0051230-mRNA-1:cds;Parent=Msa0051230-mRNA-1
chr1_2 three_prime_UTR 5325202 5325608 5325202 ID=Msa0051230-mRNA-1:three_prime_utr;Parent=Msa0051230-mRNA-1
Gene Sequence

>Msa0051230

ATGGCCTCAAAACGCATTACTAAGGAGTTGAAGGACTTGCAGAAAGACCCTCCTGTGTCTTGCAGTGCTGGCCCTGTTGGTGAAGACCTGTTTCATTGGCAAGCTACTATCATGGGACCGGCAGACAGTCCTTATGCTGGTGGTGTATTCCTAGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGGTTTCCTTTCGAACAAAAGTGTTCCACCCTAACATCAACAGCAATGGGAGTATCTGTCTTGACATTCTGAAAGAGCAGTGGAGTCCTGCTCTTACTGTTTCGAAGGTCCTGCTGTCAATTTGCTCTCTGCTGACAGATCCAAACCCAGATGATCCTTTGGTGCCTGATATTGCCCACATGTACAAGACTGACAAAGCCAAGTATGAGACTACTGCCCGGTCTTGGACTCAGAAATATGCGATGAACTAG
Protein sequence

>Msa0051230

MASKRITKELKDLQKDPPVSCSAGPVGEDLFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPDIAHMYKTDKAKYETTARSWTQKYAMN*