Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073170 | A0A072VKL0 | 93.902 | 82 | 5 | 0 | 1 | 82 | 1 | 82 | 9.12e-49 | 158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026910 | Msa0073170 | 0.811320 | 7.425123e-51 | -8.615850e-47 |
| Msa0031340 | Msa0073170 | 0.816257 | 6.071134e-52 | -8.615850e-47 |
| Msa0037880 | Msa0073170 | 0.833327 | 5.683033e-56 | -8.615850e-47 |
| Msa0043980 | Msa0073170 | 0.813157 | 2.951110e-51 | -8.615850e-47 |
| Msa0044260 | Msa0073170 | 0.821743 | 3.433293e-53 | -8.615850e-47 |
| Msa0044330 | Msa0073170 | 0.801789 | 7.628765e-49 | -8.615850e-47 |
| Msa0073170 | Msa0090100 | 0.811508 | 6.759677e-51 | -8.615850e-47 |
| Msa0073170 | Msa0092990 | 0.836228 | 1.058135e-56 | -8.615850e-47 |
| Msa0073170 | Msa0150800 | 0.815323 | 9.806945e-52 | -8.615850e-47 |
| Msa0073170 | Msa0182690 | 0.819056 | 1.418741e-52 | -8.615850e-47 |
| Msa0073170 | Msa0220580 | 0.825511 | 4.504903e-54 | -8.615850e-47 |
| Msa0073170 | Msa0269450 | 0.816432 | 5.547283e-52 | -8.615850e-47 |
| Msa0073170 | Msa0280090 | 0.806475 | 8.078665e-50 | -8.615850e-47 |
| Msa0073170 | Msa0282250 | 0.804546 | 2.050591e-49 | -8.615850e-47 |
| Msa0073170 | Msa0287410 | 0.809777 | 1.600221e-50 | -8.615850e-47 |
| Msa0073170 | Msa0288100 | 0.816768 | 4.664742e-52 | -8.615850e-47 |
| Msa0073170 | Msa0291500 | 0.802887 | 4.531804e-49 | -8.615850e-47 |
| Msa0073170 | Msa0336250 | 0.838841 | 2.263282e-57 | -8.615850e-47 |
| Msa0073170 | Msa0356960 | 0.806365 | 8.521593e-50 | -8.615850e-47 |
| Msa0073170 | Msa0359030 | 0.818283 | 2.125560e-52 | -8.615850e-47 |
| Msa0073170 | Msa0379640 | 0.834305 | 3.236759e-56 | -8.615850e-47 |
| Msa0073170 | Msa0391430 | 0.814887 | 1.225608e-51 | -8.615850e-47 |
| Msa0073170 | Msa0477130 | -0.825081 | 5.693043e-54 | -8.615850e-47 |
| Msa0073170 | Msa0484780 | 0.814196 | 1.742866e-51 | -8.615850e-47 |
| Msa0073170 | Msa0493630 | 0.812146 | 4.910256e-51 | -8.615850e-47 |
| Msa0073170 | Msa0512750 | 0.803688 | 3.094141e-49 | -8.615850e-47 |
| Msa0073170 | Msa0516440 | 0.805413 | 1.351167e-49 | -8.615850e-47 |
| Msa0073170 | Msa0585230 | 0.847420 | 1.169292e-59 | -8.615850e-47 |
| Msa0073170 | Msa0626090 | 0.822254 | 2.613185e-53 | -8.615850e-47 |
| Msa0073170 | Msa0639310 | 0.814959 | 1.181320e-51 | -8.615850e-47 |
| Msa0073170 | Msa0644840 | 0.801198 | 1.008277e-48 | -8.615850e-47 |
| Msa0073170 | Msa0649490 | 0.808248 | 3.399132e-50 | -8.615850e-47 |
| Msa0073170 | Msa0662650 | 0.816253 | 6.082963e-52 | -8.615850e-47 |
| Msa0073170 | Msa0672690 | 0.856971 | 2.242621e-62 | -8.615850e-47 |
| Msa0073170 | Msa0679710 | 0.811326 | 7.404357e-51 | -8.615850e-47 |
| Msa0073170 | Msa0688480 | 0.813979 | 1.945147e-51 | -8.615850e-47 |
| Msa0073170 | Msa0708860 | 0.821448 | 4.016613e-53 | -8.615850e-47 |
| Msa0073170 | Msa0740510 | 0.810221 | 1.284003e-50 | -8.615850e-47 |
| Msa0073170 | Msa0742380 | 0.802933 | 4.433724e-49 | -8.615850e-47 |
| Msa0073170 | Msa0777230 | 0.804142 | 2.489176e-49 | -8.615850e-47 |
| Msa0073170 | Msa0803890 | 0.801770 | 7.698227e-49 | -8.615850e-47 |
| Msa0073170 | Msa0820770 | 0.810838 | 9.444280e-51 | -8.615850e-47 |
| Msa0073170 | Msa0832150 | 0.800422 | 1.452340e-48 | -8.615850e-47 |
| Msa0073170 | Msa0861090 | 0.810102 | 1.361760e-50 | -8.615850e-47 |
| Msa0073170 | Msa0861130 | 0.801717 | 7.893826e-49 | -8.615850e-47 |
| Msa0073170 | Msa0931520 | 0.865553 | 5.432085e-65 | -8.615850e-47 |
| Msa0073170 | Msa0935670 | 0.812727 | 3.665767e-51 | -8.615850e-47 |
| Msa0073170 | Msa0993290 | 0.803105 | 4.086073e-49 | -8.615850e-47 |
| Msa0073170 | Msa0993600 | 0.803499 | 3.385460e-49 | -8.615850e-47 |
| Msa0073170 | Msa1014540 | 0.819612 | 1.060193e-52 | -8.615850e-47 |
| Msa0073170 | Msa1039880 | 0.830880 | 2.289427e-55 | -8.615850e-47 |
| Msa0073170 | Msa1043390 | 0.812088 | 5.055350e-51 | -8.615850e-47 |
| Msa0073170 | Msa1043450 | 0.806863 | 6.691431e-50 | -8.615850e-47 |
| Msa0073170 | Msa1045200 | 0.801379 | 9.259062e-49 | -8.615850e-47 |
| Msa0073170 | Msa1063510 | 0.821950 | 3.074445e-53 | -8.615850e-47 |
| Msa0073170 | Msa1082500 | 0.816237 | 6.132542e-52 | -8.615850e-47 |
| Msa0073170 | Msa1109680 | 0.802339 | 5.880578e-49 | -8.615850e-47 |
| Msa0073170 | Msa1154280 | 0.822876 | 1.873735e-53 | -8.615850e-47 |
| Msa0073170 | Msa1174040 | 0.808161 | 3.548424e-50 | -8.615850e-47 |
| Msa0073170 | Msa1201560 | 0.811565 | 6.569077e-51 | -8.615850e-47 |
| Msa0073170 | Msa1219010 | 0.802952 | 4.394021e-49 | -8.615850e-47 |
| Msa0073170 | Msa1233890 | 0.809949 | 1.469161e-50 | -8.615850e-47 |
| Msa0073170 | Msa1246510 | 0.802298 | 5.995678e-49 | -8.615850e-47 |
| Msa0073170 | Msa1251730 | 0.802354 | 5.839317e-49 | -8.615850e-47 |
| Msa0073170 | Msa1267520 | 0.803689 | 3.091555e-49 | -8.615850e-47 |
| Msa0073170 | Msa1294480 | 0.805213 | 1.487948e-49 | -8.615850e-47 |
| Msa0073170 | Msa1296280 | 0.822324 | 2.517806e-53 | -8.615850e-47 |
| Msa0073170 | Msa1296940 | 0.816767 | 4.666266e-52 | -8.615850e-47 |
| Msa0073170 | Msa1331000 | 0.806216 | 9.160238e-50 | -8.615850e-47 |
| Msa0073170 | Msa1335540 | 0.804937 | 1.699427e-49 | -8.615850e-47 |
| Msa0073170 | Msa1346370 | 0.811260 | 7.652333e-51 | -8.615850e-47 |
| Msa0073170 | Msa1375840 | 0.810123 | 1.347803e-50 | -8.615850e-47 |
| Msa0073170 | Msa1377500 | 0.836562 | 8.703032e-57 | -8.615850e-47 |
| Msa0073170 | Msa1411020 | 0.822688 | 2.072208e-53 | -8.615850e-47 |
| Msa0073170 | Msa1420490 | 0.819791 | 9.649646e-53 | -8.615850e-47 |
| Msa0073170 | Msa1423390 | 0.819561 | 1.088645e-52 | -8.615850e-47 |
| Msa0073170 | Msa1424290 | 0.819439 | 1.160834e-52 | -8.615850e-47 |
| Msa0073170 | Msa1424450 | 0.830734 | 2.484839e-55 | -8.615850e-47 |
| Msa0073170 | Msa1434350 | 0.821246 | 4.470801e-53 | -8.615850e-47 |
| Msa0073170 | Msa1439320 | 0.823092 | 1.667953e-53 | -8.615850e-47 |
| Msa0073170 | Msa1440370 | 0.814826 | 1.263895e-51 | -8.615850e-47 |
| Msa0073170 | Msa1440810 | 0.819150 | 1.350564e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073170 | MtrunA17_Chr1g0180431 | 93.902 | 82 | 5 | 0 | 1 | 82 | 1 | 82 | 1.76e-52 | 158 |
| Msa0073170 | MtrunA17_Chr7g0264791 | 62.857 | 70 | 26 | 0 | 13 | 82 | 13 | 82 | 6.63e-22 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073170 | AT5G03460.1 | 53.933 | 89 | 34 | 3 | 1 | 82 | 1 | 89 | 1.95e-27 | 95.5 |
Find 33 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTTACTACTCAGTAATT+TGG | 0.210341 | 1_2:+46645104 | None:intergenic |
| GGGAAAATCTATGCGGCTTT+TGG | 0.275103 | 1_2:-46647010 | Msa0073170:CDS |
| ATCGATTATTCATCACAAAA+TGG | 0.285304 | 1_2:-46647288 | Msa0073170:intron |
| GTAACTTCTATTATAAATAT+TGG | 0.301494 | 1_2:-46646204 | Msa0073170:three_prime_UTR |
| TATAATACAAATTGGTAGTT+TGG | 0.302534 | 1_2:-46646144 | Msa0073170:intron |
| TGCTTGACATCTACACTTCC+AGG | 0.321651 | 1_2:+46646318 | None:intergenic |
| AGATCGTTTATAATACAAAT+TGG | 0.359263 | 1_2:-46646152 | Msa0073170:three_prime_UTR |
| GATGTCAAGCAGGATTAATC+TGG | 0.359971 | 1_2:-46646306 | Msa0073170:exon |
| ATAGGTTTGCTTGGTTTGTT+TGG | 0.366801 | 1_2:-46647171 | Msa0073170:intron |
| GTATTGTTTGAAGGCTTGAT+TGG | 0.390160 | 1_2:+46646947 | None:intergenic |
| TCTACACTTCCAGGTTTAGT+AGG | 0.414150 | 1_2:+46646327 | None:intergenic |
| ATAGAGTAAAACAGAATGAT+TGG | 0.416515 | 1_2:+46645063 | None:intergenic |
| CATGCTGGAGGAGCCCTCTC+TGG | 0.417215 | 1_2:+46646971 | None:intergenic |
| TACATCAAGGTTTGATTGAA+AGG | 0.446685 | 1_2:-46646272 | Msa0073170:three_prime_UTR |
| TTATTAATAGTATTGTTTGA+AGG | 0.448328 | 1_2:+46646938 | None:intergenic |
| CCTACAGAACCTACTAAACC+TGG | 0.487175 | 1_2:-46646336 | Msa0073170:CDS |
| GAGGGAGAAAGTTAACGATT+GGG | 0.501202 | 1_2:+46647132 | None:intergenic |
| CCAGGTTTAGTAGGTTCTGT+AGG | 0.502249 | 1_2:+46646336 | None:intergenic |
| AGAGGGAGAAAGTTAACGAT+TGG | 0.504291 | 1_2:+46647131 | None:intergenic |
| TAGCAGGACGGGGCAAATGT+TGG | 0.521837 | 1_2:-46646366 | Msa0073170:intron |
| ATGTCAAGCAGGATTAATCT+GGG | 0.534833 | 1_2:-46646305 | Msa0073170:exon |
| TCAATCAAACCTTGATGTAG+AGG | 0.546537 | 1_2:+46646276 | None:intergenic |
| GAAGGCTTGATTGGACATGC+TGG | 0.554550 | 1_2:+46646956 | None:intergenic |
| TTAGTAGGTTCTGTAGGAGA+TGG | 0.555725 | 1_2:+46646342 | None:intergenic |
| ATTAGAAAATCGAAGAGAAG+AGG | 0.559856 | 1_2:+46647113 | None:intergenic |
| TTAGAAAATCGAAGAGAAGA+GGG | 0.563192 | 1_2:+46647114 | None:intergenic |
| GGGGTAGCTCCTCTACATCA+AGG | 0.578877 | 1_2:-46646285 | Msa0073170:three_prime_UTR |
| TGGAAGTGTAGATGTCAAGC+AGG | 0.579376 | 1_2:-46646316 | Msa0073170:CDS |
| GGAGTATAGAAAACCAGAGA+GGG | 0.622440 | 1_2:-46646984 | Msa0073170:CDS |
| ACGATTGGGACGAGAAAGAG+AGG | 0.630172 | 1_2:+46647146 | None:intergenic |
| GGCTTGATTGGACATGCTGG+AGG | 0.694736 | 1_2:+46646959 | None:intergenic |
| TGTCAAGCAGGATTAATCTG+GGG | 0.713429 | 1_2:-46646304 | Msa0073170:exon |
| GGGAGTATAGAAAACCAGAG+AGG | 0.717755 | 1_2:-46646985 | Msa0073170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACGAAATTTAATTTTTTTTT+TGG | - | chr1_2:46645227-46645246 | Msa0073170:intron | 10.0% |
| !!! | TTTAATTTTTTTTTTGGTAT+AGG | - | chr1_2:46645233-46645252 | Msa0073170:intron | 10.0% |
| !!! | ATTTAATTTATATAGATAAG+AGG | - | chr1_2:46646952-46646971 | Msa0073170:CDS | 10.0% |
| !!! | TTTAATTTATATAGATAAGA+GGG | - | chr1_2:46646953-46646972 | Msa0073170:CDS | 10.0% |
| !! | ATGTATATATTATAGAATAA+TGG | - | chr1_2:46647199-46647218 | Msa0073170:intron | 10.0% |
| !! | TGTATATATTATAGAATAAT+GGG | - | chr1_2:46647200-46647219 | Msa0073170:intron | 10.0% |
| !!! | ACGAAATTTAATTTTTTTTT+TGG | - | chr1_2:46645227-46645246 | Msa0073170:intron | 10.0% |
| !!! | TTTAATTTTTTTTTTGGTAT+AGG | - | chr1_2:46645233-46645252 | Msa0073170:intron | 10.0% |
| !!! | ATTTAATTTATATAGATAAG+AGG | - | chr1_2:46646952-46646971 | Msa0073170:CDS | 10.0% |
| !!! | TTTAATTTATATAGATAAGA+GGG | - | chr1_2:46646953-46646972 | Msa0073170:CDS | 10.0% |
| !! | ATGTATATATTATAGAATAA+TGG | - | chr1_2:46647199-46647218 | Msa0073170:intron | 10.0% |
| !! | TGTATATATTATAGAATAAT+GGG | - | chr1_2:46647200-46647219 | Msa0073170:intron | 10.0% |
| !! | TAAATTGAAAAGAAAAATCA+TGG | + | chr1_2:46645184-46645203 | None:intergenic | 15.0% |
| !!! | AAAATAATGATAATGATTAG+TGG | + | chr1_2:46645351-46645370 | None:intergenic | 15.0% |
| !! | TTATTAATAGTATTGTTTGA+AGG | + | chr1_2:46645487-46645506 | None:intergenic | 15.0% |
| !! | GTAACTTCTATTATAAATAT+TGG | - | chr1_2:46646218-46646237 | Msa0073170:three_prime_UTR | 15.0% |
| !! | TAAATTGAAAAGAAAAATCA+TGG | + | chr1_2:46645184-46645203 | None:intergenic | 15.0% |
| !!! | AAAATAATGATAATGATTAG+TGG | + | chr1_2:46645351-46645370 | None:intergenic | 15.0% |
| !! | TTATTAATAGTATTGTTTGA+AGG | + | chr1_2:46645487-46645506 | None:intergenic | 15.0% |
| !! | GTAACTTCTATTATAAATAT+TGG | - | chr1_2:46646218-46646237 | Msa0073170:three_prime_UTR | 15.0% |
| !!! | TAATTTTGAATTAAAACGCA+GGG | + | chr1_2:46645071-46645090 | None:intergenic | 20.0% |
| !!! | TATTTTATCCTTCTTAAAGA+TGG | - | chr1_2:46645797-46645816 | Msa0073170:intron | 20.0% |
| !! | AGATCGTTTATAATACAAAT+TGG | - | chr1_2:46646270-46646289 | Msa0073170:three_prime_UTR | 20.0% |
| !!! | TATAATACAAATTGGTAGTT+TGG | - | chr1_2:46646278-46646297 | Msa0073170:three_prime_UTR | 20.0% |
| !!! | TTTTTGCATATCTATAACAT+CGG | - | chr1_2:46646377-46646396 | Msa0073170:intron | 20.0% |
| !! | ATTCAATGAACATTGAATAT+TGG | - | chr1_2:46646674-46646693 | Msa0073170:intron | 20.0% |
| !! | TTAAAACATATACCTCAAAA+GGG | - | chr1_2:46646697-46646716 | Msa0073170:intron | 20.0% |
| !!! | CTTTGTTATATGTTTTTTGT+GGG | - | chr1_2:46646735-46646754 | Msa0073170:intron | 20.0% |
| !!! | TTTGTTATATGTTTTTTGTG+GGG | - | chr1_2:46646736-46646755 | Msa0073170:intron | 20.0% |
| !!! | TTTTCAACTTGTCTTTATTA+GGG | - | chr1_2:46646804-46646823 | Msa0073170:intron | 20.0% |
| !!! | ATATATTATAGAATAATGGG+CGG | - | chr1_2:46647203-46647222 | Msa0073170:intron | 20.0% |
| !! | ATCATTCAACATCAAATTAT+TGG | - | chr1_2:46647271-46647290 | Msa0073170:intron | 20.0% |
| !!! | TAATTTTGAATTAAAACGCA+GGG | + | chr1_2:46645071-46645090 | None:intergenic | 20.0% |
| !!! | TATTTTATCCTTCTTAAAGA+TGG | - | chr1_2:46645797-46645816 | Msa0073170:intron | 20.0% |
| !! | AGATCGTTTATAATACAAAT+TGG | - | chr1_2:46646270-46646289 | Msa0073170:three_prime_UTR | 20.0% |
| !!! | TATAATACAAATTGGTAGTT+TGG | - | chr1_2:46646278-46646297 | Msa0073170:three_prime_UTR | 20.0% |
| !!! | TTTTTGCATATCTATAACAT+CGG | - | chr1_2:46646377-46646396 | Msa0073170:intron | 20.0% |
| !! | ATTCAATGAACATTGAATAT+TGG | - | chr1_2:46646674-46646693 | Msa0073170:intron | 20.0% |
| !! | TTAAAACATATACCTCAAAA+GGG | - | chr1_2:46646697-46646716 | Msa0073170:intron | 20.0% |
| !!! | CTTTGTTATATGTTTTTTGT+GGG | - | chr1_2:46646735-46646754 | Msa0073170:intron | 20.0% |
| !!! | TTTGTTATATGTTTTTTGTG+GGG | - | chr1_2:46646736-46646755 | Msa0073170:intron | 20.0% |
| !!! | TTTTCAACTTGTCTTTATTA+GGG | - | chr1_2:46646804-46646823 | Msa0073170:intron | 20.0% |
| !!! | ATATATTATAGAATAATGGG+CGG | - | chr1_2:46647203-46647222 | Msa0073170:intron | 20.0% |
| !! | ATCATTCAACATCAAATTAT+TGG | - | chr1_2:46647271-46647290 | Msa0073170:intron | 20.0% |
| !! | GTAATTTTGAATTAAAACGC+AGG | + | chr1_2:46645072-46645091 | None:intergenic | 25.0% |
| ! | ATCGATTATTCATCACAAAA+TGG | - | chr1_2:46645134-46645153 | Msa0073170:intron | 25.0% |
| !! | ATCCTAATTTTTGTGTTTTC+AGG | - | chr1_2:46645390-46645409 | Msa0073170:intron | 25.0% |
| !! | TCCTAATTTTTGTGTTTTCA+GGG | - | chr1_2:46645391-46645410 | Msa0073170:intron | 25.0% |
| ! | ATTACTTACTATCCAAGTTA+AGG | - | chr1_2:46645701-46645720 | Msa0073170:intron | 25.0% |
| ! | AAGTTAAGGTTACTATTCAA+GGG | - | chr1_2:46645715-46645734 | Msa0073170:intron | 25.0% |
| !! | TAAAGATGGATTCTGTATAA+AGG | - | chr1_2:46645811-46645830 | Msa0073170:intron | 25.0% |
| ! | ACAAATTTCAATGTTATAGC+AGG | - | chr1_2:46646040-46646059 | Msa0073170:intron | 25.0% |
| ! | AAAAACATGATCACATCTAA+TGG | - | chr1_2:46646186-46646205 | Msa0073170:three_prime_UTR | 25.0% |
| !!! | GATTTTTTTCCTTCCTATTT+CGG | - | chr1_2:46646320-46646339 | Msa0073170:CDS | 25.0% |
| !! | TTCCAGTGTCATTAAAATAA+AGG | - | chr1_2:46646530-46646549 | Msa0073170:intron | 25.0% |
| !!! | TTCCTTTATTTTAATGACAC+TGG | + | chr1_2:46646535-46646554 | None:intergenic | 25.0% |
| !!! | TTTTGCTCTTGTTTAGAAAA+AGG | + | chr1_2:46646596-46646615 | None:intergenic | 25.0% |
| ! | GTTAAAACATATACCTCAAA+AGG | - | chr1_2:46646696-46646715 | Msa0073170:intron | 25.0% |
| ! | CCACAAAAAACATATAACAA+AGG | + | chr1_2:46646737-46646756 | None:intergenic | 25.0% |
| !!! | CCTTTGTTATATGTTTTTTG+TGG | - | chr1_2:46646734-46646753 | Msa0073170:intron | 25.0% |
| !!! | TTGTTATATGTTTTTTGTGG+GGG | - | chr1_2:46646737-46646756 | Msa0073170:intron | 25.0% |
| !! | GTTTTCAACTTGTCTTTATT+AGG | - | chr1_2:46646803-46646822 | Msa0073170:intron | 25.0% |
| ! | AAATTAAGAGTGGAAAAAAG+AGG | - | chr1_2:46646839-46646858 | Msa0073170:intron | 25.0% |
| ! | AGACTTATTATCACAAAAGT+AGG | - | chr1_2:46646871-46646890 | Msa0073170:intron | 25.0% |
| ! | GACTTATTATCACAAAAGTA+GGG | - | chr1_2:46646872-46646891 | Msa0073170:intron | 25.0% |
| ! | AATTTATATAGATAAGAGGG+AGG | - | chr1_2:46646956-46646975 | Msa0073170:CDS | 25.0% |
| ! | ATTTATATAGATAAGAGGGA+GGG | - | chr1_2:46646957-46646976 | Msa0073170:CDS | 25.0% |
| !!! | TTGTTTGAAACATGATTTTG+TGG | - | chr1_2:46647170-46647189 | Msa0073170:CDS | 25.0% |
| !!! | TGTTTGAAACATGATTTTGT+GGG | - | chr1_2:46647171-46647190 | Msa0073170:intron | 25.0% |
| !! | ACTTCAAATATTTCTGTCTA+AGG | + | chr1_2:46647248-46647267 | None:intergenic | 25.0% |
| ! | ATAGAGTAAAACAGAATGAT+TGG | + | chr1_2:46647362-46647381 | None:intergenic | 25.0% |
| !! | GTAATTTTGAATTAAAACGC+AGG | + | chr1_2:46645072-46645091 | None:intergenic | 25.0% |
| ! | ATCGATTATTCATCACAAAA+TGG | - | chr1_2:46645134-46645153 | Msa0073170:intron | 25.0% |
| !! | ATCCTAATTTTTGTGTTTTC+AGG | - | chr1_2:46645390-46645409 | Msa0073170:intron | 25.0% |
| !! | TCCTAATTTTTGTGTTTTCA+GGG | - | chr1_2:46645391-46645410 | Msa0073170:intron | 25.0% |
| ! | ATTACTTACTATCCAAGTTA+AGG | - | chr1_2:46645701-46645720 | Msa0073170:intron | 25.0% |
| ! | AAGTTAAGGTTACTATTCAA+GGG | - | chr1_2:46645715-46645734 | Msa0073170:intron | 25.0% |
| !! | TAAAGATGGATTCTGTATAA+AGG | - | chr1_2:46645811-46645830 | Msa0073170:intron | 25.0% |
| ! | ACAAATTTCAATGTTATAGC+AGG | - | chr1_2:46646040-46646059 | Msa0073170:intron | 25.0% |
| ! | AAAAACATGATCACATCTAA+TGG | - | chr1_2:46646186-46646205 | Msa0073170:three_prime_UTR | 25.0% |
| !!! | GATTTTTTTCCTTCCTATTT+CGG | - | chr1_2:46646320-46646339 | Msa0073170:CDS | 25.0% |
| !! | TTCCAGTGTCATTAAAATAA+AGG | - | chr1_2:46646530-46646549 | Msa0073170:intron | 25.0% |
| !!! | TTCCTTTATTTTAATGACAC+TGG | + | chr1_2:46646535-46646554 | None:intergenic | 25.0% |
| !!! | TTTTGCTCTTGTTTAGAAAA+AGG | + | chr1_2:46646596-46646615 | None:intergenic | 25.0% |
| ! | GTTAAAACATATACCTCAAA+AGG | - | chr1_2:46646696-46646715 | Msa0073170:intron | 25.0% |
| ! | CCACAAAAAACATATAACAA+AGG | + | chr1_2:46646737-46646756 | None:intergenic | 25.0% |
| !!! | CCTTTGTTATATGTTTTTTG+TGG | - | chr1_2:46646734-46646753 | Msa0073170:intron | 25.0% |
| !!! | TTGTTATATGTTTTTTGTGG+GGG | - | chr1_2:46646737-46646756 | Msa0073170:intron | 25.0% |
| !! | GTTTTCAACTTGTCTTTATT+AGG | - | chr1_2:46646803-46646822 | Msa0073170:intron | 25.0% |
| ! | AAATTAAGAGTGGAAAAAAG+AGG | - | chr1_2:46646839-46646858 | Msa0073170:intron | 25.0% |
| ! | AGACTTATTATCACAAAAGT+AGG | - | chr1_2:46646871-46646890 | Msa0073170:intron | 25.0% |
| ! | GACTTATTATCACAAAAGTA+GGG | - | chr1_2:46646872-46646891 | Msa0073170:intron | 25.0% |
| ! | AATTTATATAGATAAGAGGG+AGG | - | chr1_2:46646956-46646975 | Msa0073170:CDS | 25.0% |
| ! | ATTTATATAGATAAGAGGGA+GGG | - | chr1_2:46646957-46646976 | Msa0073170:CDS | 25.0% |
| !!! | TTGTTTGAAACATGATTTTG+TGG | - | chr1_2:46647170-46647189 | Msa0073170:CDS | 25.0% |
| !!! | TGTTTGAAACATGATTTTGT+GGG | - | chr1_2:46647171-46647190 | Msa0073170:intron | 25.0% |
| !! | ACTTCAAATATTTCTGTCTA+AGG | + | chr1_2:46647248-46647267 | None:intergenic | 25.0% |
| ! | ATAGAGTAAAACAGAATGAT+TGG | + | chr1_2:46647362-46647381 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTATAGGTTTGCT+TGG | - | chr1_2:46645242-46645261 | Msa0073170:intron | 30.0% |
| TTAGAAAATCGAAGAGAAGA+GGG | + | chr1_2:46645311-46645330 | None:intergenic | 30.0% | |
| ATTAGAAAATCGAAGAGAAG+AGG | + | chr1_2:46645312-46645331 | None:intergenic | 30.0% | |
| ! | TCTTCTCTTCGATTTTCTAA+TGG | - | chr1_2:46645311-46645330 | Msa0073170:intron | 30.0% |
| ! | CCTAATTTTTGTGTTTTCAG+GGG | - | chr1_2:46645392-46645411 | Msa0073170:intron | 30.0% |
| CAAAAAACAGTATTCAGTTC+AGG | + | chr1_2:46645601-46645620 | None:intergenic | 30.0% | |
| !!! | CTGAACTGAATACTGTTTTT+TGG | - | chr1_2:46645599-46645618 | Msa0073170:intron | 30.0% |
| !!! | ACTGTTTTTTGGAATAGTGT+TGG | - | chr1_2:46645610-46645629 | Msa0073170:intron | 30.0% |
| TCTGTGCAACTAAAAGAAAA+GGG | + | chr1_2:46645665-46645684 | None:intergenic | 30.0% | |
| ATCTGTGCAACTAAAAGAAA+AGG | + | chr1_2:46645666-46645685 | None:intergenic | 30.0% | |
| CTTGAATAGTAACCTTAACT+TGG | + | chr1_2:46645716-46645735 | None:intergenic | 30.0% | |
| CAAGTTAAGGTTACTATTCA+AGG | - | chr1_2:46645714-46645733 | Msa0073170:intron | 30.0% | |
| ! | TACAGAATCCATCTTTAAGA+AGG | + | chr1_2:46645808-46645827 | None:intergenic | 30.0% |
| ATTTCAATGTTATAGCAGGA+CGG | - | chr1_2:46646044-46646063 | Msa0073170:intron | 30.0% | |
| TACATCAAGGTTTGATTGAA+AGG | - | chr1_2:46646150-46646169 | Msa0073170:three_prime_UTR | 30.0% | |
| TATTCACAATCATCCGAAAA+AGG | - | chr1_2:46646407-46646426 | Msa0073170:intron | 30.0% | |
| ATTCACAATCATCCGAAAAA+GGG | - | chr1_2:46646408-46646427 | Msa0073170:intron | 30.0% | |
| ! | CAAAATGATCTTCCCTTTTT+CGG | + | chr1_2:46646423-46646442 | None:intergenic | 30.0% |
| ! | GATCATTTTGCAATTTTGTG+AGG | - | chr1_2:46646433-46646452 | Msa0073170:intron | 30.0% |
| AAAGGAAAAACAAAATCCAC+TGG | - | chr1_2:46646548-46646567 | Msa0073170:intron | 30.0% | |
| ! | TTTAGTTTACATTAGTGTGC+TGG | + | chr1_2:46646629-46646648 | None:intergenic | 30.0% |
| ACAAAAATGAGGTGATCATT+TGG | - | chr1_2:46646898-46646917 | Msa0073170:intron | 30.0% | |
| GAGAACCAATTATGTTGATA+TGG | + | chr1_2:46646984-46647003 | None:intergenic | 30.0% | |
| ! | AACATAATTGGTTCTCACAA+AGG | - | chr1_2:46646988-46647007 | Msa0073170:CDS | 30.0% |
| !!! | ATGTTTTAACCGTCTATTGT+GGG | - | chr1_2:46647061-46647080 | Msa0073170:intron | 30.0% |
| TTCAATGGGTAGAACATATT+TGG | - | chr1_2:46647122-46647141 | Msa0073170:CDS | 30.0% | |
| TCAGTTACTACTCAGTAATT+TGG | + | chr1_2:46647321-46647340 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTATAGGTTTGCT+TGG | - | chr1_2:46645242-46645261 | Msa0073170:intron | 30.0% |
| TTAGAAAATCGAAGAGAAGA+GGG | + | chr1_2:46645311-46645330 | None:intergenic | 30.0% | |
| ATTAGAAAATCGAAGAGAAG+AGG | + | chr1_2:46645312-46645331 | None:intergenic | 30.0% | |
| ! | TCTTCTCTTCGATTTTCTAA+TGG | - | chr1_2:46645311-46645330 | Msa0073170:intron | 30.0% |
| ! | CCTAATTTTTGTGTTTTCAG+GGG | - | chr1_2:46645392-46645411 | Msa0073170:intron | 30.0% |
| CAAAAAACAGTATTCAGTTC+AGG | + | chr1_2:46645601-46645620 | None:intergenic | 30.0% | |
| !!! | CTGAACTGAATACTGTTTTT+TGG | - | chr1_2:46645599-46645618 | Msa0073170:intron | 30.0% |
| !!! | ACTGTTTTTTGGAATAGTGT+TGG | - | chr1_2:46645610-46645629 | Msa0073170:intron | 30.0% |
| TCTGTGCAACTAAAAGAAAA+GGG | + | chr1_2:46645665-46645684 | None:intergenic | 30.0% | |
| ATCTGTGCAACTAAAAGAAA+AGG | + | chr1_2:46645666-46645685 | None:intergenic | 30.0% | |
| CTTGAATAGTAACCTTAACT+TGG | + | chr1_2:46645716-46645735 | None:intergenic | 30.0% | |
| CAAGTTAAGGTTACTATTCA+AGG | - | chr1_2:46645714-46645733 | Msa0073170:intron | 30.0% | |
| ! | TACAGAATCCATCTTTAAGA+AGG | + | chr1_2:46645808-46645827 | None:intergenic | 30.0% |
| ATTTCAATGTTATAGCAGGA+CGG | - | chr1_2:46646044-46646063 | Msa0073170:intron | 30.0% | |
| TACATCAAGGTTTGATTGAA+AGG | - | chr1_2:46646150-46646169 | Msa0073170:three_prime_UTR | 30.0% | |
| TATTCACAATCATCCGAAAA+AGG | - | chr1_2:46646407-46646426 | Msa0073170:intron | 30.0% | |
| ATTCACAATCATCCGAAAAA+GGG | - | chr1_2:46646408-46646427 | Msa0073170:intron | 30.0% | |
| ! | CAAAATGATCTTCCCTTTTT+CGG | + | chr1_2:46646423-46646442 | None:intergenic | 30.0% |
| ! | GATCATTTTGCAATTTTGTG+AGG | - | chr1_2:46646433-46646452 | Msa0073170:intron | 30.0% |
| AAAGGAAAAACAAAATCCAC+TGG | - | chr1_2:46646548-46646567 | Msa0073170:intron | 30.0% | |
| ! | TTTAGTTTACATTAGTGTGC+TGG | + | chr1_2:46646629-46646648 | None:intergenic | 30.0% |
| ACAAAAATGAGGTGATCATT+TGG | - | chr1_2:46646898-46646917 | Msa0073170:intron | 30.0% | |
| GAGAACCAATTATGTTGATA+TGG | + | chr1_2:46646984-46647003 | None:intergenic | 30.0% | |
| ! | AACATAATTGGTTCTCACAA+AGG | - | chr1_2:46646988-46647007 | Msa0073170:CDS | 30.0% |
| !!! | ATGTTTTAACCGTCTATTGT+GGG | - | chr1_2:46647061-46647080 | Msa0073170:intron | 30.0% |
| TTCAATGGGTAGAACATATT+TGG | - | chr1_2:46647122-46647141 | Msa0073170:CDS | 30.0% | |
| TCAGTTACTACTCAGTAATT+TGG | + | chr1_2:46647321-46647340 | None:intergenic | 30.0% | |
| !! | ATAGGTTTGCTTGGTTTGTT+TGG | - | chr1_2:46645251-46645270 | Msa0073170:intron | 35.0% |
| CCCCTGAAAACACAAAAATT+AGG | + | chr1_2:46645395-46645414 | None:intergenic | 35.0% | |
| !! | TTTTCAGGGGAAAATCTATG+CGG | - | chr1_2:46645405-46645424 | Msa0073170:intron | 35.0% |
| GTATTGTTTGAAGGCTTGAT+TGG | + | chr1_2:46645478-46645497 | None:intergenic | 35.0% | |
| ACAACCAGATATTGATCCTT+TGG | - | chr1_2:46645847-46645866 | Msa0073170:intron | 35.0% | |
| ACAACCAAAGGATCAATATC+TGG | + | chr1_2:46645854-46645873 | None:intergenic | 35.0% | |
| CAAAACTCAACAACAACCAA+AGG | + | chr1_2:46645866-46645885 | None:intergenic | 35.0% | |
| !! | AAGTGCGTGGATTATGTTTT+GGG | - | chr1_2:46645895-46645914 | Msa0073170:intron | 35.0% |
| GCAGTGAATAATATCTGTGT+TGG | - | chr1_2:46645934-46645953 | Msa0073170:intron | 35.0% | |
| GTGAATAATATCTGTGTTGG+TGG | - | chr1_2:46645937-46645956 | Msa0073170:intron | 35.0% | |
| TTTCAATGTTATAGCAGGAC+GGG | - | chr1_2:46646045-46646064 | Msa0073170:intron | 35.0% | |
| ATGTCAAGCAGGATTAATCT+GGG | - | chr1_2:46646117-46646136 | Msa0073170:intron | 35.0% | |
| TCAATCAAACCTTGATGTAG+AGG | + | chr1_2:46646149-46646168 | None:intergenic | 35.0% | |
| !! | ATTGGTAGTTTGGTGTAAGA+TGG | - | chr1_2:46646288-46646307 | Msa0073170:three_prime_UTR | 35.0% |
| ACTTATCTTCCGAAATAGGA+AGG | + | chr1_2:46646332-46646351 | None:intergenic | 35.0% | |
| TCGGATGATTGTGAATATCA+AGG | + | chr1_2:46646404-46646423 | None:intergenic | 35.0% | |
| GTCAATATCAGTCAAGTAGT+AGG | + | chr1_2:46646574-46646593 | None:intergenic | 35.0% | |
| ! | TCAAGTAGATTTCCCTTTTG+AGG | + | chr1_2:46646712-46646731 | None:intergenic | 35.0% |
| !!! | TTATATGTTTTTTGTGGGGG+AGG | - | chr1_2:46646740-46646759 | Msa0073170:intron | 35.0% |
| !!! | TATATGTTTTTTGTGGGGGA+GGG | - | chr1_2:46646741-46646760 | Msa0073170:intron | 35.0% |
| TCAACTTGTCTTTATTAGGG+AGG | - | chr1_2:46646807-46646826 | Msa0073170:intron | 35.0% | |
| GCAGTTGTAGAAATTAAGAG+TGG | - | chr1_2:46646829-46646848 | Msa0073170:intron | 35.0% | |
| GAGTGGAAAAAAGAGGTTTA+TGG | - | chr1_2:46646846-46646865 | Msa0073170:intron | 35.0% | |
| AGGGACCATATCAACATAAT+TGG | - | chr1_2:46646976-46646995 | Msa0073170:CDS | 35.0% | |
| ! | TAAGAAAGTTGGTTGGAGAT+GGG | - | chr1_2:46647012-46647031 | Msa0073170:CDS | 35.0% |
| !!! | GATGTTTTAACCGTCTATTG+TGG | - | chr1_2:46647060-46647079 | Msa0073170:intron | 35.0% |
| !! | ATTATAGAATAATGGGCGGT+TGG | - | chr1_2:46647207-46647226 | Msa0073170:intron | 35.0% |
| !! | ATAGGTTTGCTTGGTTTGTT+TGG | - | chr1_2:46645251-46645270 | Msa0073170:intron | 35.0% |
| CCCCTGAAAACACAAAAATT+AGG | + | chr1_2:46645395-46645414 | None:intergenic | 35.0% | |
| !! | TTTTCAGGGGAAAATCTATG+CGG | - | chr1_2:46645405-46645424 | Msa0073170:intron | 35.0% |
| GTATTGTTTGAAGGCTTGAT+TGG | + | chr1_2:46645478-46645497 | None:intergenic | 35.0% | |
| ACAACCAGATATTGATCCTT+TGG | - | chr1_2:46645847-46645866 | Msa0073170:intron | 35.0% | |
| ACAACCAAAGGATCAATATC+TGG | + | chr1_2:46645854-46645873 | None:intergenic | 35.0% | |
| CAAAACTCAACAACAACCAA+AGG | + | chr1_2:46645866-46645885 | None:intergenic | 35.0% | |
| !! | AAGTGCGTGGATTATGTTTT+GGG | - | chr1_2:46645895-46645914 | Msa0073170:intron | 35.0% |
| GCAGTGAATAATATCTGTGT+TGG | - | chr1_2:46645934-46645953 | Msa0073170:intron | 35.0% | |
| GTGAATAATATCTGTGTTGG+TGG | - | chr1_2:46645937-46645956 | Msa0073170:intron | 35.0% | |
| TTTCAATGTTATAGCAGGAC+GGG | - | chr1_2:46646045-46646064 | Msa0073170:intron | 35.0% | |
| ATGTCAAGCAGGATTAATCT+GGG | - | chr1_2:46646117-46646136 | Msa0073170:intron | 35.0% | |
| TCAATCAAACCTTGATGTAG+AGG | + | chr1_2:46646149-46646168 | None:intergenic | 35.0% | |
| !! | ATTGGTAGTTTGGTGTAAGA+TGG | - | chr1_2:46646288-46646307 | Msa0073170:three_prime_UTR | 35.0% |
| ACTTATCTTCCGAAATAGGA+AGG | + | chr1_2:46646332-46646351 | None:intergenic | 35.0% | |
| TCGGATGATTGTGAATATCA+AGG | + | chr1_2:46646404-46646423 | None:intergenic | 35.0% | |
| GTCAATATCAGTCAAGTAGT+AGG | + | chr1_2:46646574-46646593 | None:intergenic | 35.0% | |
| ! | TCAAGTAGATTTCCCTTTTG+AGG | + | chr1_2:46646712-46646731 | None:intergenic | 35.0% |
| !!! | TTATATGTTTTTTGTGGGGG+AGG | - | chr1_2:46646740-46646759 | Msa0073170:intron | 35.0% |
| !!! | TATATGTTTTTTGTGGGGGA+GGG | - | chr1_2:46646741-46646760 | Msa0073170:intron | 35.0% |
| TCAACTTGTCTTTATTAGGG+AGG | - | chr1_2:46646807-46646826 | Msa0073170:intron | 35.0% | |
| GCAGTTGTAGAAATTAAGAG+TGG | - | chr1_2:46646829-46646848 | Msa0073170:intron | 35.0% | |
| GAGTGGAAAAAAGAGGTTTA+TGG | - | chr1_2:46646846-46646865 | Msa0073170:intron | 35.0% | |
| AGGGACCATATCAACATAAT+TGG | - | chr1_2:46646976-46646995 | Msa0073170:CDS | 35.0% | |
| ! | TAAGAAAGTTGGTTGGAGAT+GGG | - | chr1_2:46647012-46647031 | Msa0073170:CDS | 35.0% |
| !!! | GATGTTTTAACCGTCTATTG+TGG | - | chr1_2:46647060-46647079 | Msa0073170:intron | 35.0% |
| !! | ATTATAGAATAATGGGCGGT+TGG | - | chr1_2:46647207-46647226 | Msa0073170:intron | 35.0% |
| GAGGGAGAAAGTTAACGATT+GGG | + | chr1_2:46645293-46645312 | None:intergenic | 40.0% | |
| AGAGGGAGAAAGTTAACGAT+TGG | + | chr1_2:46645294-46645313 | None:intergenic | 40.0% | |
| ! | AAATCTATGCGGCTTTTGGT+TGG | - | chr1_2:46645416-46645435 | Msa0073170:intron | 40.0% |
| !! | AATCTATGCGGCTTTTGGTT+GGG | - | chr1_2:46645417-46645436 | Msa0073170:intron | 40.0% |
| GGAGTATAGAAAACCAGAGA+GGG | - | chr1_2:46645438-46645457 | Msa0073170:intron | 40.0% | |
| !! | TGGTTGTTGTTGAGTTTTGC+TGG | - | chr1_2:46645867-46645886 | Msa0073170:intron | 40.0% |
| AACATAATCCACGCACTTGT+TGG | + | chr1_2:46645893-46645912 | None:intergenic | 40.0% | |
| !! | CAAGTGCGTGGATTATGTTT+TGG | - | chr1_2:46645894-46645913 | Msa0073170:intron | 40.0% |
| TTCAATGTTATAGCAGGACG+GGG | - | chr1_2:46646046-46646065 | Msa0073170:intron | 40.0% | |
| TTAGTAGGTTCTGTAGGAGA+TGG | + | chr1_2:46646083-46646102 | None:intergenic | 40.0% | |
| TCTACACTTCCAGGTTTAGT+AGG | + | chr1_2:46646098-46646117 | None:intergenic | 40.0% | |
| GATGTCAAGCAGGATTAATC+TGG | - | chr1_2:46646116-46646135 | Msa0073170:intron | 40.0% | |
| TGTCAAGCAGGATTAATCTG+GGG | - | chr1_2:46646118-46646137 | Msa0073170:intron | 40.0% | |
| CGAGACTTATCTTCCGAAAT+AGG | + | chr1_2:46646336-46646355 | None:intergenic | 40.0% | |
| !!! | ATATGTTTTTTGTGGGGGAG+GGG | - | chr1_2:46646742-46646761 | Msa0073170:intron | 40.0% |
| AGGAAGTGAGAACAACTCTT+TGG | - | chr1_2:46646767-46646786 | Msa0073170:intron | 40.0% | |
| AAGTAGGGCTCACAAAAATG+AGG | - | chr1_2:46646887-46646906 | Msa0073170:intron | 40.0% | |
| ! | ATGAGGTGATCATTTGGAGT+TGG | - | chr1_2:46646904-46646923 | Msa0073170:intron | 40.0% |
| CTCACAAAGGCTAAGAAAGT+TGG | - | chr1_2:46647001-46647020 | Msa0073170:CDS | 40.0% | |
| ! | CAAAGGCTAAGAAAGTTGGT+TGG | - | chr1_2:46647005-46647024 | Msa0073170:CDS | 40.0% |
| ! | CTAAGAAAGTTGGTTGGAGA+TGG | - | chr1_2:46647011-46647030 | Msa0073170:CDS | 40.0% |
| ! | TTTTAACCGTCTATTGTGGG+TGG | - | chr1_2:46647064-46647083 | Msa0073170:intron | 40.0% |
| CATTTACCACCCACAATAGA+CGG | + | chr1_2:46647073-46647092 | None:intergenic | 40.0% | |
| GTGGTAAATGAGAGTGACTT+TGG | - | chr1_2:46647083-46647102 | Msa0073170:intron | 40.0% | |
| ! | AATGAGAGTGACTTTGGAGA+TGG | - | chr1_2:46647089-46647108 | Msa0073170:intron | 40.0% |
| ! | ATGGAGGGAGCTATTTCAAT+GGG | - | chr1_2:46647108-46647127 | Msa0073170:intron | 40.0% |
| GGGTAGAACATATTTGGTAG+AGG | - | chr1_2:46647128-46647147 | Msa0073170:CDS | 40.0% | |
| GAGGGAGAAAGTTAACGATT+GGG | + | chr1_2:46645293-46645312 | None:intergenic | 40.0% | |
| AGAGGGAGAAAGTTAACGAT+TGG | + | chr1_2:46645294-46645313 | None:intergenic | 40.0% | |
| ! | AAATCTATGCGGCTTTTGGT+TGG | - | chr1_2:46645416-46645435 | Msa0073170:intron | 40.0% |
| !! | AATCTATGCGGCTTTTGGTT+GGG | - | chr1_2:46645417-46645436 | Msa0073170:intron | 40.0% |
| GGAGTATAGAAAACCAGAGA+GGG | - | chr1_2:46645438-46645457 | Msa0073170:intron | 40.0% | |
| !! | TGGTTGTTGTTGAGTTTTGC+TGG | - | chr1_2:46645867-46645886 | Msa0073170:intron | 40.0% |
| AACATAATCCACGCACTTGT+TGG | + | chr1_2:46645893-46645912 | None:intergenic | 40.0% | |
| !! | CAAGTGCGTGGATTATGTTT+TGG | - | chr1_2:46645894-46645913 | Msa0073170:intron | 40.0% |
| TTCAATGTTATAGCAGGACG+GGG | - | chr1_2:46646046-46646065 | Msa0073170:intron | 40.0% | |
| TTAGTAGGTTCTGTAGGAGA+TGG | + | chr1_2:46646083-46646102 | None:intergenic | 40.0% | |
| TCTACACTTCCAGGTTTAGT+AGG | + | chr1_2:46646098-46646117 | None:intergenic | 40.0% | |
| GATGTCAAGCAGGATTAATC+TGG | - | chr1_2:46646116-46646135 | Msa0073170:intron | 40.0% | |
| TGTCAAGCAGGATTAATCTG+GGG | - | chr1_2:46646118-46646137 | Msa0073170:intron | 40.0% | |
| CGAGACTTATCTTCCGAAAT+AGG | + | chr1_2:46646336-46646355 | None:intergenic | 40.0% | |
| !!! | ATATGTTTTTTGTGGGGGAG+GGG | - | chr1_2:46646742-46646761 | Msa0073170:intron | 40.0% |
| AGGAAGTGAGAACAACTCTT+TGG | - | chr1_2:46646767-46646786 | Msa0073170:intron | 40.0% | |
| AAGTAGGGCTCACAAAAATG+AGG | - | chr1_2:46646887-46646906 | Msa0073170:intron | 40.0% | |
| ! | ATGAGGTGATCATTTGGAGT+TGG | - | chr1_2:46646904-46646923 | Msa0073170:intron | 40.0% |
| CTCACAAAGGCTAAGAAAGT+TGG | - | chr1_2:46647001-46647020 | Msa0073170:CDS | 40.0% | |
| ! | CAAAGGCTAAGAAAGTTGGT+TGG | - | chr1_2:46647005-46647024 | Msa0073170:CDS | 40.0% |
| ! | CTAAGAAAGTTGGTTGGAGA+TGG | - | chr1_2:46647011-46647030 | Msa0073170:CDS | 40.0% |
| ! | TTTTAACCGTCTATTGTGGG+TGG | - | chr1_2:46647064-46647083 | Msa0073170:intron | 40.0% |
| CATTTACCACCCACAATAGA+CGG | + | chr1_2:46647073-46647092 | None:intergenic | 40.0% | |
| GTGGTAAATGAGAGTGACTT+TGG | - | chr1_2:46647083-46647102 | Msa0073170:intron | 40.0% | |
| ! | AATGAGAGTGACTTTGGAGA+TGG | - | chr1_2:46647089-46647108 | Msa0073170:intron | 40.0% |
| ! | ATGGAGGGAGCTATTTCAAT+GGG | - | chr1_2:46647108-46647127 | Msa0073170:intron | 40.0% |
| GGGTAGAACATATTTGGTAG+AGG | - | chr1_2:46647128-46647147 | Msa0073170:CDS | 40.0% | |
| ! | GGGAAAATCTATGCGGCTTT+TGG | - | chr1_2:46645412-46645431 | Msa0073170:intron | 45.0% |
| ! | GGGAGTATAGAAAACCAGAG+AGG | - | chr1_2:46645437-46645456 | Msa0073170:intron | 45.0% |
| CCAGGTTTAGTAGGTTCTGT+AGG | + | chr1_2:46646089-46646108 | None:intergenic | 45.0% | |
| CCTACAGAACCTACTAAACC+TGG | - | chr1_2:46646086-46646105 | Msa0073170:intron | 45.0% | |
| TGCTTGACATCTACACTTCC+AGG | + | chr1_2:46646107-46646126 | None:intergenic | 45.0% | |
| ! | TGGAAGTGTAGATGTCAAGC+AGG | - | chr1_2:46646106-46646125 | Msa0073170:intron | 45.0% |
| ! | AGGTGATCATTTGGAGTTGG+AGG | - | chr1_2:46646907-46646926 | Msa0073170:intron | 45.0% |
| AGCTGGGTAGTATGACTCTA+AGG | - | chr1_2:46647036-46647055 | Msa0073170:intron | 45.0% | |
| GCTGGGTAGTATGACTCTAA+GGG | - | chr1_2:46647037-46647056 | Msa0073170:intron | 45.0% | |
| CTGGGTAGTATGACTCTAAG+GGG | - | chr1_2:46647038-46647057 | Msa0073170:intron | 45.0% | |
| ! | AGAGTGACTTTGGAGATGGA+GGG | - | chr1_2:46647093-46647112 | Msa0073170:intron | 45.0% |
| ! | GATGGAGGGAGCTATTTCAA+TGG | - | chr1_2:46647107-46647126 | Msa0073170:intron | 45.0% |
| ! | GGGAAAATCTATGCGGCTTT+TGG | - | chr1_2:46645412-46645431 | Msa0073170:intron | 45.0% |
| ! | GGGAGTATAGAAAACCAGAG+AGG | - | chr1_2:46645437-46645456 | Msa0073170:intron | 45.0% |
| CCAGGTTTAGTAGGTTCTGT+AGG | + | chr1_2:46646089-46646108 | None:intergenic | 45.0% | |
| CCTACAGAACCTACTAAACC+TGG | - | chr1_2:46646086-46646105 | Msa0073170:intron | 45.0% | |
| TGCTTGACATCTACACTTCC+AGG | + | chr1_2:46646107-46646126 | None:intergenic | 45.0% | |
| ! | TGGAAGTGTAGATGTCAAGC+AGG | - | chr1_2:46646106-46646125 | Msa0073170:intron | 45.0% |
| ! | AGGTGATCATTTGGAGTTGG+AGG | - | chr1_2:46646907-46646926 | Msa0073170:intron | 45.0% |
| AGCTGGGTAGTATGACTCTA+AGG | - | chr1_2:46647036-46647055 | Msa0073170:intron | 45.0% | |
| GCTGGGTAGTATGACTCTAA+GGG | - | chr1_2:46647037-46647056 | Msa0073170:intron | 45.0% | |
| CTGGGTAGTATGACTCTAAG+GGG | - | chr1_2:46647038-46647057 | Msa0073170:intron | 45.0% | |
| ! | AGAGTGACTTTGGAGATGGA+GGG | - | chr1_2:46647093-46647112 | Msa0073170:intron | 45.0% |
| ! | GATGGAGGGAGCTATTTCAA+TGG | - | chr1_2:46647107-46647126 | Msa0073170:intron | 45.0% |
| ACGATTGGGACGAGAAAGAG+AGG | + | chr1_2:46645279-46645298 | None:intergenic | 50.0% | |
| GAAGGCTTGATTGGACATGC+TGG | + | chr1_2:46645469-46645488 | None:intergenic | 50.0% | |
| TCAGTCAAGTAGTAGGCCAG+TGG | + | chr1_2:46646567-46646586 | None:intergenic | 50.0% | |
| ! | GTTGGAGGTGAAGTTCTAGC+TGG | - | chr1_2:46646922-46646941 | Msa0073170:intron | 50.0% |
| ! | GTGAAGTTCTAGCTGGTGGA+GGG | - | chr1_2:46646929-46646948 | Msa0073170:intron | 50.0% |
| TTGGTTGGAGATGGGTAGCT+GGG | - | chr1_2:46647020-46647039 | Msa0073170:intron | 50.0% | |
| ! | GAGAGTGACTTTGGAGATGG+AGG | - | chr1_2:46647092-46647111 | Msa0073170:intron | 50.0% |
| ! | ATGGGCGGTTGGTTCAAGTA+AGG | - | chr1_2:46647218-46647237 | Msa0073170:intron | 50.0% |
| ACGATTGGGACGAGAAAGAG+AGG | + | chr1_2:46645279-46645298 | None:intergenic | 50.0% | |
| GAAGGCTTGATTGGACATGC+TGG | + | chr1_2:46645469-46645488 | None:intergenic | 50.0% | |
| TCAGTCAAGTAGTAGGCCAG+TGG | + | chr1_2:46646567-46646586 | None:intergenic | 50.0% | |
| ! | GTTGGAGGTGAAGTTCTAGC+TGG | - | chr1_2:46646922-46646941 | Msa0073170:intron | 50.0% |
| ! | GTGAAGTTCTAGCTGGTGGA+GGG | - | chr1_2:46646929-46646948 | Msa0073170:intron | 50.0% |
| TTGGTTGGAGATGGGTAGCT+GGG | - | chr1_2:46647020-46647039 | Msa0073170:intron | 50.0% | |
| ! | GAGAGTGACTTTGGAGATGG+AGG | - | chr1_2:46647092-46647111 | Msa0073170:intron | 50.0% |
| ! | ATGGGCGGTTGGTTCAAGTA+AGG | - | chr1_2:46647218-46647237 | Msa0073170:intron | 50.0% |
| GGCTTGATTGGACATGCTGG+AGG | + | chr1_2:46645466-46645485 | None:intergenic | 55.0% | |
| TTTGCTGGCCAACAAGTGCG+TGG | - | chr1_2:46645882-46645901 | Msa0073170:intron | 55.0% | |
| TAGCAGGACGGGGCAAATGT+TGG | - | chr1_2:46646056-46646075 | Msa0073170:intron | 55.0% | |
| GGGGTAGCTCCTCTACATCA+AGG | - | chr1_2:46646137-46646156 | Msa0073170:intron | 55.0% | |
| ! | GGAGGTGAAGTTCTAGCTGG+TGG | - | chr1_2:46646925-46646944 | Msa0073170:intron | 55.0% |
| ! | GGTGAAGTTCTAGCTGGTGG+AGG | - | chr1_2:46646928-46646947 | Msa0073170:intron | 55.0% |
| GTTGGTTGGAGATGGGTAGC+TGG | - | chr1_2:46647019-46647038 | Msa0073170:intron | 55.0% | |
| GGCTTGATTGGACATGCTGG+AGG | + | chr1_2:46645466-46645485 | None:intergenic | 55.0% | |
| TTTGCTGGCCAACAAGTGCG+TGG | - | chr1_2:46645882-46645901 | Msa0073170:intron | 55.0% | |
| TAGCAGGACGGGGCAAATGT+TGG | - | chr1_2:46646056-46646075 | Msa0073170:intron | 55.0% | |
| GGGGTAGCTCCTCTACATCA+AGG | - | chr1_2:46646137-46646156 | Msa0073170:intron | 55.0% | |
| ! | GGAGGTGAAGTTCTAGCTGG+TGG | - | chr1_2:46646925-46646944 | Msa0073170:intron | 55.0% |
| ! | GGTGAAGTTCTAGCTGGTGG+AGG | - | chr1_2:46646928-46646947 | Msa0073170:intron | 55.0% |
| GTTGGTTGGAGATGGGTAGC+TGG | - | chr1_2:46647019-46647038 | Msa0073170:intron | 55.0% | |
| !!! | TTTTTTGTGGGGGAGGGGCG+AGG | - | chr1_2:46646747-46646766 | Msa0073170:intron | 60.0% |
| !!! | TTTTTTGTGGGGGAGGGGCG+AGG | - | chr1_2:46646747-46646766 | Msa0073170:intron | 60.0% |
| CATGCTGGAGGAGCCCTCTC+TGG | + | chr1_2:46645454-46645473 | None:intergenic | 65.0% | |
| CATGCTGGAGGAGCCCTCTC+TGG | + | chr1_2:46645454-46645473 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 46645057 | 46647387 | 46645057 | ID=Msa0073170;Name=Msa0073170 |
| chr1_2 | mRNA | 46645057 | 46647387 | 46645057 | ID=Msa0073170-mRNA-1;Parent=Msa0073170;Name=Msa0073170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=96|1|1|1|0.75|0.6|5|261|82 |
| chr1_2 | exon | 46645057 | 46645151 | 46645057 | ID=Msa0073170-mRNA-1:exon:14188;Parent=Msa0073170-mRNA-1 |
| chr1_2 | exon | 46646145 | 46646382 | 46646145 | ID=Msa0073170-mRNA-1:exon:14187;Parent=Msa0073170-mRNA-1 |
| chr1_2 | exon | 46646937 | 46647032 | 46646937 | ID=Msa0073170-mRNA-1:exon:14186;Parent=Msa0073170-mRNA-1 |
| chr1_2 | exon | 46647112 | 46647189 | 46647112 | ID=Msa0073170-mRNA-1:exon:14185;Parent=Msa0073170-mRNA-1 |
| chr1_2 | exon | 46647289 | 46647387 | 46647289 | ID=Msa0073170-mRNA-1:exon:14184;Parent=Msa0073170-mRNA-1 |
| chr1_2 | five_prime_UTR | 46647292 | 46647387 | 46647292 | ID=Msa0073170-mRNA-1:five_prime_utr;Parent=Msa0073170-mRNA-1 |
| chr1_2 | CDS | 46647289 | 46647291 | 46647289 | ID=Msa0073170-mRNA-1:cds;Parent=Msa0073170-mRNA-1 |
| chr1_2 | CDS | 46647112 | 46647189 | 46647112 | ID=Msa0073170-mRNA-1:cds;Parent=Msa0073170-mRNA-1 |
| chr1_2 | CDS | 46646937 | 46647032 | 46646937 | ID=Msa0073170-mRNA-1:cds;Parent=Msa0073170-mRNA-1 |
| chr1_2 | CDS | 46646311 | 46646382 | 46646311 | ID=Msa0073170-mRNA-1:cds;Parent=Msa0073170-mRNA-1 |
| chr1_2 | three_prime_UTR | 46646145 | 46646310 | 46646145 | ID=Msa0073170-mRNA-1:three_prime_utr;Parent=Msa0073170-mRNA-1 |
| chr1_2 | three_prime_UTR | 46645057 | 46645151 | 46645057 | ID=Msa0073170-mRNA-1:three_prime_utr;Parent=Msa0073170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
