Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228120 | XP_003598694.1 | 87.831 | 189 | 3 | 1 | 1 | 169 | 103 | 291 | 4.73e-114 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228120 | sp|O62518|YHPK_CAEEL | 49.735 | 189 | 72 | 3 | 1 | 169 | 98 | 283 | 6.61e-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228120 | G7IW56 | 87.831 | 189 | 3 | 1 | 1 | 169 | 103 | 291 | 2.26e-114 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0228120 | 0.821515 | 3.875755e-53 | -8.615850e-47 |
| Msa0010500 | Msa0228120 | 0.805861 | 1.087864e-49 | -8.615850e-47 |
| Msa0019390 | Msa0228120 | 0.812412 | 4.294987e-51 | -8.615850e-47 |
| Msa0032580 | Msa0228120 | 0.800122 | 1.671390e-48 | -8.615850e-47 |
| Msa0043660 | Msa0228120 | 0.836579 | 8.613032e-57 | -8.615850e-47 |
| Msa0047160 | Msa0228120 | 0.840028 | 1.112946e-57 | -8.615850e-47 |
| Msa0054440 | Msa0228120 | 0.823941 | 1.055932e-53 | -8.615850e-47 |
| Msa0090520 | Msa0228120 | 0.808341 | 3.248075e-50 | -8.615850e-47 |
| Msa0094470 | Msa0228120 | 0.831601 | 1.521522e-55 | -8.615850e-47 |
| Msa0127020 | Msa0228120 | 0.807341 | 5.300950e-50 | -8.615850e-47 |
| Msa0137550 | Msa0228120 | 0.832788 | 7.740094e-56 | -8.615850e-47 |
| Msa0137990 | Msa0228120 | 0.808538 | 2.947966e-50 | -8.615850e-47 |
| Msa0146770 | Msa0228120 | 0.856315 | 3.495707e-62 | -8.615850e-47 |
| Msa0159170 | Msa0228120 | 0.804268 | 2.343218e-49 | -8.615850e-47 |
| Msa0169280 | Msa0228120 | 0.802896 | 4.512098e-49 | -8.615850e-47 |
| Msa0177210 | Msa0228120 | 0.803365 | 3.610373e-49 | -8.615850e-47 |
| Msa0183900 | Msa0228120 | 0.806203 | 9.221308e-50 | -8.615850e-47 |
| Msa0189300 | Msa0228120 | 0.861658 | 8.789057e-64 | -8.615850e-47 |
| Msa0228120 | Msa0228170 | 0.992688 | 8.051998e-195 | -8.615850e-47 |
| Msa0228120 | Msa0231660 | 0.851541 | 8.296455e-61 | -8.615850e-47 |
| Msa0228120 | Msa0279240 | 0.812386 | 4.352702e-51 | -8.615850e-47 |
| Msa0228120 | Msa0309750 | 0.821767 | 3.389351e-53 | -8.615850e-47 |
| Msa0228120 | Msa0388700 | 0.809250 | 2.075965e-50 | -8.615850e-47 |
| Msa0228120 | Msa0397070 | 0.891898 | 2.607734e-74 | -8.615850e-47 |
| Msa0228120 | Msa0481030 | 0.834593 | 2.740509e-56 | -8.615850e-47 |
| Msa0228120 | Msa0482130 | 0.835986 | 1.218921e-56 | -8.615850e-47 |
| Msa0228120 | Msa0489410 | 0.815896 | 7.307629e-52 | -8.615850e-47 |
| Msa0228120 | Msa0500470 | 0.824177 | 9.295985e-54 | -8.615850e-47 |
| Msa0228120 | Msa0502090 | 0.805394 | 1.363572e-49 | -8.615850e-47 |
| Msa0228120 | Msa0510930 | 0.815201 | 1.043748e-51 | -8.615850e-47 |
| Msa0228120 | Msa0542090 | 0.818353 | 2.049082e-52 | -8.615850e-47 |
| Msa0228120 | Msa0542130 | 0.818218 | 2.198384e-52 | -8.615850e-47 |
| Msa0228120 | Msa0554290 | 0.821011 | 5.064575e-53 | -8.615850e-47 |
| Msa0228120 | Msa0555450 | 0.812406 | 4.308629e-51 | -8.615850e-47 |
| Msa0228120 | Msa0581280 | 0.836244 | 1.048356e-56 | -8.615850e-47 |
| Msa0228120 | Msa0603670 | 0.807891 | 4.050477e-50 | -8.615850e-47 |
| Msa0228120 | Msa0605000 | 0.829364 | 5.363759e-55 | -8.615850e-47 |
| Msa0228120 | Msa0612390 | 0.818179 | 2.243614e-52 | -8.615850e-47 |
| Msa0228120 | Msa0648780 | 0.816246 | 6.104957e-52 | -8.615850e-47 |
| Msa0228120 | Msa0685140 | 0.822087 | 2.857872e-53 | -8.615850e-47 |
| Msa0228120 | Msa0689260 | 0.815568 | 8.647572e-52 | -8.615850e-47 |
| Msa0228120 | Msa0691290 | 0.813383 | 2.631842e-51 | -8.615850e-47 |
| Msa0228120 | Msa0711780 | 0.817647 | 2.958943e-52 | -8.615850e-47 |
| Msa0228120 | Msa0715650 | 0.829630 | 4.623851e-55 | -8.615850e-47 |
| Msa0228120 | Msa0719420 | 0.838252 | 3.211290e-57 | -8.615850e-47 |
| Msa0228120 | Msa0719610 | 0.814142 | 1.791012e-51 | -8.615850e-47 |
| Msa0228120 | Msa0763330 | 0.845686 | 3.478914e-59 | -8.615850e-47 |
| Msa0228120 | Msa0772480 | 0.841088 | 5.873156e-58 | -8.615850e-47 |
| Msa0228120 | Msa0789680 | 0.839626 | 1.415544e-57 | -8.615850e-47 |
| Msa0228120 | Msa0794670 | 0.829488 | 5.005690e-55 | -8.615850e-47 |
| Msa0228120 | Msa0798440 | 0.847890 | 8.683058e-60 | -8.615850e-47 |
| Msa0228120 | Msa0802410 | 0.842289 | 2.832754e-58 | -8.615850e-47 |
| Msa0228120 | Msa0819060 | 0.816964 | 4.215183e-52 | -8.615850e-47 |
| Msa0228120 | Msa0827280 | 0.813285 | 2.765085e-51 | -8.615850e-47 |
| Msa0228120 | Msa0830540 | 0.849405 | 3.302121e-60 | -8.615850e-47 |
| Msa0228120 | Msa0859180 | 0.830033 | 3.687844e-55 | -8.615850e-47 |
| Msa0228120 | Msa0925770 | 0.815516 | 8.881712e-52 | -8.615850e-47 |
| Msa0228120 | Msa0945440 | 0.825695 | 4.073740e-54 | -8.615850e-47 |
| Msa0228120 | Msa0989540 | 0.817877 | 2.625327e-52 | -8.615850e-47 |
| Msa0228120 | Msa1006840 | 0.802821 | 4.676849e-49 | -8.615850e-47 |
| Msa0228120 | Msa1077030 | 0.809343 | 1.982738e-50 | -8.615850e-47 |
| Msa0228120 | Msa1089320 | 0.815991 | 6.961955e-52 | -8.615850e-47 |
| Msa0228120 | Msa1160590 | 0.808328 | 3.269258e-50 | -8.615850e-47 |
| Msa0228120 | Msa1209200 | 0.824174 | 9.309194e-54 | -8.615850e-47 |
| Msa0228120 | Msa1209260 | 0.827642 | 1.397319e-54 | -8.615850e-47 |
| Msa0228120 | Msa1209760 | 0.832476 | 9.250142e-56 | -8.615850e-47 |
| Msa0228120 | Msa1218500 | 0.800982 | 1.116171e-48 | -8.615850e-47 |
| Msa0228120 | Msa1265630 | 0.838760 | 2.375176e-57 | -8.615850e-47 |
| Msa0228120 | Msa1307180 | 0.808158 | 3.553650e-50 | -8.615850e-47 |
| Msa0228120 | Msa1316360 | 0.817167 | 3.794629e-52 | -8.615850e-47 |
| Msa0228120 | Msa1332590 | 0.810833 | 9.469616e-51 | -8.615850e-47 |
| Msa0228120 | Msa1355700 | 0.820555 | 6.446996e-53 | -8.615850e-47 |
| Msa0228120 | Msa1358250 | 0.816644 | 4.971457e-52 | -8.615850e-47 |
| Msa0228120 | Msa1359970 | 0.805702 | 1.174905e-49 | -8.615850e-47 |
| Msa0228120 | Msa1364210 | 0.816192 | 6.275776e-52 | -8.615850e-47 |
| Msa0228120 | Msa1394290 | 0.838300 | 3.120593e-57 | -8.615850e-47 |
| Msa0228120 | Msa1419870 | 0.813928 | 1.997124e-51 | -8.615850e-47 |
| Msa0228120 | Msa1436520 | 0.807557 | 4.769037e-50 | -8.615850e-47 |
| Msa0228120 | Msa1457920 | 0.843962 | 1.014376e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228120 | MtrunA17_Chr3g0084381 | 87.831 | 189 | 3 | 1 | 1 | 169 | 103 | 291 | 4.35e-118 | 335 |
| Msa0228120 | MtrunA17_Chr8g0345651 | 30.047 | 213 | 102 | 3 | 1 | 169 | 145 | 354 | 9.77e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228120 | AT1G63780.1 | 65.263 | 190 | 45 | 1 | 1 | 169 | 103 | 292 | 1.72e-91 | 268 |
| Msa0228120 | AT4G01560.1 | 33.333 | 201 | 98 | 4 | 1 | 169 | 147 | 343 | 2.39e-27 | 105 |
Find 39 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTCCTACTGCATATTT+TGG | 0.152617 | 2_1:+79509119 | Msa0228120:CDS |
| TAGAAGAAAAGCTGAAATTT+TGG | 0.216351 | 2_1:+79513417 | Msa0228120:three_prime_UTR |
| TCCTTCAATTCTACAGATTT+AGG | 0.221306 | 2_1:-79512595 | None:intergenic |
| CATTCTAAAACATCTGTTTC+CGG | 0.297484 | 2_1:+79510797 | Msa0228120:CDS |
| ACGACACAAACAAGAGAAAA+TGG | 0.341632 | 2_1:+79513467 | Msa0228120:three_prime_UTR |
| CGATTCATTCTTTCAGCATT+GGG | 0.364675 | 2_1:-79507999 | None:intergenic |
| AATAATATGCGGATAAGCTT+CGG | 0.371784 | 2_1:-79509272 | None:intergenic |
| GAGGAACTTTCTGTGATTGA+TGG | 0.376034 | 2_1:+79513343 | Msa0228120:exon |
| TCTGTAGAATTGAAGGAAAT+TGG | 0.387754 | 2_1:+79512601 | Msa0228120:CDS |
| ATAGTTTGTCATCTACCATA+TGG | 0.392644 | 2_1:+79509101 | Msa0228120:CDS |
| TGACTATACAGATGTTATCT+TGG | 0.414988 | 2_1:+79509046 | Msa0228120:CDS |
| ATAATATGCGGATAAGCTTC+GGG | 0.448452 | 2_1:-79509271 | None:intergenic |
| TCCTAAATCTGTAGAATTGA+AGG | 0.458118 | 2_1:+79512594 | Msa0228120:CDS |
| ACGATTCATTCTTTCAGCAT+TGG | 0.464351 | 2_1:-79508000 | None:intergenic |
| TGACAAACTATTAAACCATC+TGG | 0.466080 | 2_1:-79509089 | None:intergenic |
| GCTGTTCCTTGCAGGTTACA+AGG | 0.469779 | 2_1:+79509212 | Msa0228120:intron |
| AAATATGCAGTAGGACCATA+TGG | 0.471997 | 2_1:-79509116 | None:intergenic |
| TTCCGTGTAGTGTTCATGTA+AGG | 0.489124 | 2_1:-79513320 | None:intergenic |
| AAGAATGAATCGTGGTGGTC+AGG | 0.523960 | 2_1:+79508010 | Msa0228120:CDS |
| AGCTTCGGGCATGGTTCCAA+CGG | 0.525645 | 2_1:-79509257 | None:intergenic |
| GCAGATAAAATTAGGAACAG+TGG | 0.540090 | 2_1:+79513262 | Msa0228120:intron |
| TCTATAAACAGTTAGGTGAA+AGG | 0.554062 | 2_1:+79510766 | Msa0228120:intron |
| ACATGAACACTACACGGAAG+AGG | 0.568800 | 2_1:+79513324 | Msa0228120:CDS |
| TGTTACTGTGCTGTTAGTGC+AGG | 0.580733 | 2_1:+79513384 | Msa0228120:three_prime_UTR |
| AGTAATCCAAAATATGCAGT+AGG | 0.590553 | 2_1:-79509125 | None:intergenic |
| TTGAGACACTAAACTCAGCA+AGG | 0.597537 | 2_1:+79513571 | Msa0228120:three_prime_UTR |
| GAACTTTCTGTGATTGATGG+AGG | 0.597778 | 2_1:+79513346 | Msa0228120:exon |
| ATTAGAGACAGAAAAGCCGT+TGG | 0.603528 | 2_1:+79509241 | Msa0228120:CDS |
| CATCTGTATAGTCATGTGAT+CGG | 0.609305 | 2_1:-79509037 | None:intergenic |
| ATGCGGATAAGCTTCGGGCA+TGG | 0.635152 | 2_1:-79509266 | None:intergenic |
| GAACACCGAGGTGTGCCAGA+TGG | 0.638084 | 2_1:+79509074 | Msa0228120:CDS |
| GACCTTACATGAACACTACA+CGG | 0.644746 | 2_1:+79513318 | Msa0228120:CDS |
| TGAGACACTAAACTCAGCAA+GGG | 0.685905 | 2_1:+79513572 | Msa0228120:three_prime_UTR |
| TTAAACCATCTGGCACACCT+CGG | 0.692377 | 2_1:-79509079 | None:intergenic |
| TATAGACGCAACTCAAAACG+TGG | 0.698081 | 2_1:-79512625 | None:intergenic |
| AAATTATCAAGAATAATATG+CGG | 0.698309 | 2_1:-79509283 | None:intergenic |
| GCTGAAAGAATGAATCGTGG+TGG | 0.764437 | 2_1:+79508005 | Msa0228120:CDS |
| AATGCTGAAAGAATGAATCG+TGG | 0.776928 | 2_1:+79508002 | Msa0228120:CDS |
| ATCTTGGTTCATGAACACCG+AGG | 0.787086 | 2_1:+79509062 | Msa0228120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAAAAATAAAATA+TGG | + | chr2_1:79511261-79511280 | Msa0228120:intron | 0.0% |
| !!! | TTATTTTATATTTTTTTTTT+GGG | - | chr2_1:79512227-79512246 | None:intergenic | 0.0% |
| !!! | TTTATTTTATATTTTTTTTT+TGG | - | chr2_1:79512228-79512247 | None:intergenic | 0.0% |
| !! | TTAAAAACATTAATAAATCA+GGG | - | chr2_1:79508678-79508697 | None:intergenic | 10.0% |
| !! | ATTAAAAACATTAATAAATC+AGG | - | chr2_1:79508679-79508698 | None:intergenic | 10.0% |
| !!! | AATATCATCATTATTTTTTT+CGG | - | chr2_1:79508977-79508996 | None:intergenic | 10.0% |
| !! | AGCATATAATTAAAAAAATA+TGG | - | chr2_1:79510178-79510197 | None:intergenic | 10.0% |
| !!! | TAAAAAAAAAAATTTTACAG+GGG | - | chr2_1:79510920-79510939 | None:intergenic | 10.0% |
| !!! | CTAAAAAAAAAAATTTTACA+GGG | - | chr2_1:79510921-79510940 | None:intergenic | 10.0% |
| !!! | TCTAAAAAAAAAAATTTTAC+AGG | - | chr2_1:79510922-79510941 | None:intergenic | 10.0% |
| !!! | AAAACAAAAAAATTTTATGA+GGG | - | chr2_1:79512345-79512364 | None:intergenic | 10.0% |
| !!! | CTGAAATTTTTTAAAAAAAT+TGG | + | chr2_1:79511199-79511218 | Msa0228120:intron | 10.0% |
| !! | TATAAAAAATGAAAAAATTC+TGG | + | chr2_1:79511290-79511309 | Msa0228120:intron | 10.0% |
| !!! | AAGAAATTCATATTTTTTTT+CGG | + | chr2_1:79511375-79511394 | Msa0228120:intron | 10.0% |
| !!! | AAAATTCATATTTTTTTTTC+CGG | + | chr2_1:79511431-79511450 | Msa0228120:intron | 10.0% |
| !!! | AATTTCATTAGTATTTTTTT+CGG | - | chr2_1:79511501-79511520 | None:intergenic | 10.0% |
| !!! | TTATTTCCAAATTTTTTTTT+GGG | - | chr2_1:79511610-79511629 | None:intergenic | 10.0% |
| !!! | TTTATTTCCAAATTTTTTTT+TGG | - | chr2_1:79511611-79511630 | None:intergenic | 10.0% |
| !!! | AAAACAAAAAAATTTTATGA+GGG | + | chr2_1:79512345-79512364 | Msa0228120:intron | 10.0% |
| !!! | ATCTAAAAAAAAATTTTTAC+AGG | + | chr2_1:79512372-79512391 | Msa0228120:intron | 10.0% |
| !!! | TCTAAAAAAAAATTTTTACA+GGG | + | chr2_1:79512373-79512392 | Msa0228120:intron | 10.0% |
| !! | ATAAAATTAATAACAACAAA+GGG | - | chr2_1:79512685-79512704 | None:intergenic | 10.0% |
| !!! | ATAATACTTTTTTTTTTTGA+AGG | - | chr2_1:79513699-79513718 | None:intergenic | 10.0% |
| !! | AATATGGAAAATTGATTATT+TGG | + | chr2_1:79508084-79508103 | Msa0228120:intron | 15.0% |
| !! | ATATTAGTATATTAACTTCA+CGG | - | chr2_1:79508269-79508288 | None:intergenic | 15.0% |
| !! | TTAATATTAGATAATATGCT+TGG | + | chr2_1:79508299-79508318 | Msa0228120:intron | 15.0% |
| !! | TAATATTAGATAATATGCTT+GGG | + | chr2_1:79508300-79508319 | Msa0228120:intron | 15.0% |
| !!! | AAATAATTTATTTGCTATTG+TGG | + | chr2_1:79508753-79508772 | Msa0228120:intron | 15.0% |
| !! | AAATTATCAAGAATAATATG+CGG | - | chr2_1:79509286-79509305 | None:intergenic | 15.0% |
| !! | AGTATTATAATTGATATAGA+TGG | - | chr2_1:79510473-79510492 | None:intergenic | 15.0% |
| !!! | CAAAACAAAAAAATTTTATG+AGG | - | chr2_1:79512344-79512363 | None:intergenic | 15.0% |
| !!! | CTCATAAAATTTTTTTGTTT+TGG | + | chr2_1:79510949-79510968 | Msa0228120:intron | 15.0% |
| !!! | AAATTTTTTTGTTTTGGTTT+TGG | + | chr2_1:79510955-79510974 | Msa0228120:intron | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | + | chr2_1:79511231-79511250 | Msa0228120:intron | 15.0% |
| !!! | ATTTCATTAGTATTTTTTTC+GGG | - | chr2_1:79511500-79511519 | None:intergenic | 15.0% |
| !! | AAAATTCCCAAAAAAAAATT+TGG | + | chr2_1:79511601-79511620 | Msa0228120:intron | 15.0% |
| !!! | CGAAATTTTATTTAAAATTC+TGG | - | chr2_1:79511830-79511849 | None:intergenic | 15.0% |
| !! | TCTGAAAAAAATTAAAATTC+TGG | - | chr2_1:79511901-79511920 | None:intergenic | 15.0% |
| !! | CTGAAAATATTAAAAAATTC+TGG | - | chr2_1:79512117-79512136 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTGTTTTGGTTT+TGG | - | chr2_1:79510955-79510974 | None:intergenic | 15.0% |
| !!! | CTCATAAAATTTTTTTGTTT+TGG | - | chr2_1:79510949-79510968 | None:intergenic | 15.0% |
| !!! | CAAAACAAAAAAATTTTATG+AGG | + | chr2_1:79512344-79512363 | Msa0228120:intron | 15.0% |
| !!! | CTAAAAAAAAATTTTTACAG+GGG | + | chr2_1:79512374-79512393 | Msa0228120:intron | 15.0% |
| !! | ATAAAACAGGATAAATAAAA+GGG | - | chr2_1:79512447-79512466 | None:intergenic | 15.0% |
| !! | TAAAATTAATAACAACAAAG+GGG | - | chr2_1:79512684-79512703 | None:intergenic | 15.0% |
| !! | CATAAAATTAATAACAACAA+AGG | - | chr2_1:79512686-79512705 | None:intergenic | 15.0% |
| !!! | CTTTGTTGTTATTAATTTTA+TGG | + | chr2_1:79512684-79512703 | Msa0228120:intron | 15.0% |
| !!! | ATTTGGATTTTCAATTCTTT+TGG | - | chr2_1:79508165-79508184 | None:intergenic | 20.0% |
| !! | TATTAGTATATTAACTTCAC+GGG | - | chr2_1:79508268-79508287 | None:intergenic | 20.0% |
| !! | AATATTAGATAATATGCTTG+GGG | + | chr2_1:79508301-79508320 | Msa0228120:intron | 20.0% |
| !! | AAATGTAATGTGTAAAATGT+TGG | - | chr2_1:79508408-79508427 | None:intergenic | 20.0% |
| !!! | TTATGTAGAAAGTACAATAA+TGG | - | chr2_1:79508456-79508475 | None:intergenic | 20.0% |
| !! | ACAAAAACTATATAGAGATA+TGG | - | chr2_1:79508494-79508513 | None:intergenic | 20.0% |
| !!! | TTAATTTTCACACTGTTATT+TGG | + | chr2_1:79508694-79508713 | Msa0228120:intron | 20.0% |
| !!! | GTGTTAACTATATAGATTTT+AGG | + | chr2_1:79509172-79509191 | Msa0228120:intron | 20.0% |
| !!! | TCTTGATAATTTTGAAACTA+AGG | + | chr2_1:79509294-79509313 | Msa0228120:CDS | 20.0% |
| !!! | TTTGTACATACTAATTTTAC+TGG | + | chr2_1:79509347-79509366 | Msa0228120:intron | 20.0% |
| !! | ATGAAAATATAGAATGATTG+TGG | + | chr2_1:79509451-79509470 | Msa0228120:intron | 20.0% |
| !! | TAAGTAAAATTAAACGATGT+AGG | + | chr2_1:79509517-79509536 | Msa0228120:intron | 20.0% |
| !! | AACATTAGAAATACTTCATT+TGG | + | chr2_1:79509571-79509590 | Msa0228120:intron | 20.0% |
| !! | CTTAATCTTATTATGTAAGT+CGG | - | chr2_1:79509816-79509835 | None:intergenic | 20.0% |
| !! | TAATCAACTCTTATTATTAG+GGG | - | chr2_1:79509936-79509955 | None:intergenic | 20.0% |
| !! | CTAATCAACTCTTATTATTA+GGG | - | chr2_1:79509937-79509956 | None:intergenic | 20.0% |
| !! | TCTAATCAACTCTTATTATT+AGG | - | chr2_1:79509938-79509957 | None:intergenic | 20.0% |
| !! | TATATTGAGGTTATATTCAA+TGG | - | chr2_1:79510016-79510035 | None:intergenic | 20.0% |
| !! | ATGGTTAATATTAATAACAC+AGG | - | chr2_1:79510159-79510178 | None:intergenic | 20.0% |
| !!! | TTCATTTGAATCTATTTTGA+AGG | + | chr2_1:79510669-79510688 | Msa0228120:intron | 20.0% |
| !!! | TTCCAAATTTTTTACAATAC+CGG | + | chr2_1:79511344-79511363 | Msa0228120:intron | 20.0% |
| !!! | ATGAATTTCTTTCATTTTTC+CGG | - | chr2_1:79511366-79511385 | None:intergenic | 20.0% |
| !!! | TGAATTTTTTTTCCGTTATA+CGG | - | chr2_1:79511419-79511438 | None:intergenic | 20.0% |
| !! | TATTTATAAACCGAGAATAA+GGG | - | chr2_1:79511577-79511596 | None:intergenic | 20.0% |
| !! | TAAAAATTGTGAAAAACTTC+TGG | - | chr2_1:79511777-79511796 | None:intergenic | 20.0% |
| !! | CATAAAACAGGATAAATAAA+AGG | - | chr2_1:79512448-79512467 | None:intergenic | 20.0% |
| !!! | TGTTGTTATTAATTTTATGG+AGG | + | chr2_1:79512687-79512706 | Msa0228120:intron | 20.0% |
| !!! | ACCAATAATTCAATATTTTC+TGG | + | chr2_1:79512808-79512827 | Msa0228120:intron | 20.0% |
| !! | ACCAGAAAATATTGAATTAT+TGG | - | chr2_1:79512812-79512831 | None:intergenic | 20.0% |
| !! | GCAAGAAAATATTGAATTAT+TGG | - | chr2_1:79512868-79512887 | None:intergenic | 20.0% |
| !! | TTCAAGAGAATATCTATTAT+TGG | - | chr2_1:79512907-79512926 | None:intergenic | 20.0% |
| ! | GCACATATAGAAAATGATAA+CGG | - | chr2_1:79508060-79508079 | None:intergenic | 25.0% |
| ! | TTCTATATGTGCTTGTAATA+TGG | + | chr2_1:79508068-79508087 | Msa0228120:intron | 25.0% |
| ! | CAATGCAAAAATATCTTCAA+GGG | - | chr2_1:79508596-79508615 | None:intergenic | 25.0% |
| ! | GCATGTTATATCATATATAC+TGG | + | chr2_1:79508615-79508634 | Msa0228120:intron | 25.0% |
| !!! | ATTATTTTGACACATACATG+AGG | - | chr2_1:79508740-79508759 | None:intergenic | 25.0% |
| ! | TTAAGGTATGTATCTTATCA+TGG | - | chr2_1:79508882-79508901 | None:intergenic | 25.0% |
| !! | AACTATTACTGATTAGTTAG+AGG | - | chr2_1:79508931-79508950 | None:intergenic | 25.0% |
| ! | TGAAATAACCTGAAATGAAA+GGG | - | chr2_1:79509000-79509019 | None:intergenic | 25.0% |
| !!! | ATATTTTGGATTACTCAATG+TGG | + | chr2_1:79509133-79509152 | Msa0228120:CDS | 25.0% |
| !!! | TGTTTTGAATACTGCAAAAA+AGG | - | chr2_1:79509484-79509503 | None:intergenic | 25.0% |
| ! | TCAGTACTTCAATCATAATT+TGG | - | chr2_1:79509733-79509752 | None:intergenic | 25.0% |
| !!! | AATTTACAGAAGCACTTATA+AGG | - | chr2_1:79510427-79510446 | None:intergenic | 25.0% |
| !! | CTTTTTGTCTATAAACAGTT+AGG | + | chr2_1:79510759-79510778 | Msa0228120:intron | 25.0% |
| !!! | AAACAGATGTTTTAGAATGT+TGG | - | chr2_1:79510796-79510815 | None:intergenic | 25.0% |
| !!! | GTTCAGGTTAGTTTTATTTA+GGG | + | chr2_1:79510878-79510897 | Msa0228120:intron | 25.0% |
| !! | ACAAAAAAATTTTATGAGGG+TGG | - | chr2_1:79512348-79512367 | None:intergenic | 25.0% |
| ! | TTCCGGTATTGTAAAAAATT+TGG | - | chr2_1:79511349-79511368 | None:intergenic | 25.0% |
| ! | GTATTTATAAACCGAGAATA+AGG | - | chr2_1:79511578-79511597 | None:intergenic | 25.0% |
| !! | ACAAAAAAATTTTATGAGGG+TGG | + | chr2_1:79512348-79512367 | Msa0228120:intron | 25.0% |
| !! | TTAATTTTATGGAGGAATGA+AGG | + | chr2_1:79512695-79512714 | Msa0228120:intron | 25.0% |
| !! | TTCAACTTTAGGAATAAGAT+TGG | - | chr2_1:79513221-79513240 | None:intergenic | 25.0% |
| !!! | AGTTTTTGGTATTCAACTTT+AGG | - | chr2_1:79513232-79513251 | None:intergenic | 25.0% |
| !! | AACCTTTTGCAGATAAAATT+AGG | + | chr2_1:79513254-79513273 | Msa0228120:intron | 25.0% |
| !! | TTCCTAATTTTATCTGCAAA+AGG | - | chr2_1:79513259-79513278 | None:intergenic | 25.0% |
| !! | TAGAAGAAAAGCTGAAATTT+TGG | + | chr2_1:79513417-79513436 | Msa0228120:three_prime_UTR | 25.0% |
| !! | AATGATAACGGAGGATAAAA+TGG | - | chr2_1:79508048-79508067 | None:intergenic | 30.0% |
| !! | CATATAGAAAATGATAACGG+AGG | - | chr2_1:79508057-79508076 | None:intergenic | 30.0% |
| ACGCAACAGTAGAAAATATT+TGG | - | chr2_1:79508182-79508201 | None:intergenic | 30.0% | |
| TGTTGCGTTAGCAAAAATAT+GGG | + | chr2_1:79508194-79508213 | Msa0228120:intron | 30.0% | |
| ! | AGTACAATAATGGAACATAG+TGG | - | chr2_1:79508446-79508465 | None:intergenic | 30.0% |
| GCAATGCAAAAATATCTTCA+AGG | - | chr2_1:79508597-79508616 | None:intergenic | 30.0% | |
| ! | TGGCTTATTTAGAGTTTCTA+TGG | + | chr2_1:79508635-79508654 | Msa0228120:intron | 30.0% |
| GGTTAAACCAAAAACAATGT+TGG | - | chr2_1:79508861-79508880 | None:intergenic | 30.0% | |
| ATGATATTCCCTTTCATTTC+AGG | + | chr2_1:79508989-79509008 | Msa0228120:intron | 30.0% | |
| CTGAAATAACCTGAAATGAA+AGG | - | chr2_1:79509001-79509020 | None:intergenic | 30.0% | |
| TGACTATACAGATGTTATCT+TGG | + | chr2_1:79509046-79509065 | Msa0228120:CDS | 30.0% | |
| TGACAAACTATTAAACCATC+TGG | - | chr2_1:79509092-79509111 | None:intergenic | 30.0% | |
| ! | ATAGTTTGTCATCTACCATA+TGG | + | chr2_1:79509101-79509120 | Msa0228120:CDS | 30.0% |
| AGTAATCCAAAATATGCAGT+AGG | - | chr2_1:79509128-79509147 | None:intergenic | 30.0% | |
| !!! | ATGTGGTAAGTGTTAGTTTT+AGG | + | chr2_1:79509150-79509169 | Msa0228120:intron | 30.0% |
| AATAATATGCGGATAAGCTT+CGG | - | chr2_1:79509275-79509294 | None:intergenic | 30.0% | |
| ! | CATACTAATTTTACTGGCAA+TGG | + | chr2_1:79509353-79509372 | Msa0228120:intron | 30.0% |
| !!! | AATGTTTTAGCCAAATGCTA+TGG | - | chr2_1:79509557-79509576 | None:intergenic | 30.0% |
| GAAATACTTCATTTGGAGAA+TGG | + | chr2_1:79509578-79509597 | Msa0228120:intron | 30.0% | |
| TTCAATCATAATTTGGACCA+GGG | - | chr2_1:79509726-79509745 | None:intergenic | 30.0% | |
| TAAGCTCAGTAGAATGATTA+AGG | + | chr2_1:79509964-79509983 | Msa0228120:intron | 30.0% | |
| AATTATATGCTGTGTACTCA+TGG | + | chr2_1:79510187-79510206 | Msa0228120:intron | 30.0% | |
| ATTATATGCTGTGTACTCAT+GGG | + | chr2_1:79510188-79510207 | Msa0228120:intron | 30.0% | |
| TATAATTGATATCCGACCTT+AGG | + | chr2_1:79510231-79510250 | Msa0228120:intron | 30.0% | |
| ! | ATCTTTTCCAAATTGACCTA+AGG | - | chr2_1:79510250-79510269 | None:intergenic | 30.0% |
| AGGTCAATTTGGAAAAGATT+AGG | + | chr2_1:79510251-79510270 | Msa0228120:intron | 30.0% | |
| TTTCAATGTGAACATATGCT+TGG | - | chr2_1:79510322-79510341 | None:intergenic | 30.0% | |
| AAGGTAGTTGGGAAATAAAA+AGG | - | chr2_1:79510408-79510427 | None:intergenic | 30.0% | |
| AATTGATATAGATGGCGATT+AGG | - | chr2_1:79510465-79510484 | None:intergenic | 30.0% | |
| ! | CAGAAAGGTAATTATTTTCG+CGG | - | chr2_1:79510564-79510583 | None:intergenic | 30.0% |
| ACTGTAAACAGTTATGTGAA+AGG | + | chr2_1:79510640-79510659 | Msa0228120:intron | 30.0% | |
| ! | AGTGTTACTATTGTTATGGA+TGG | - | chr2_1:79510704-79510723 | None:intergenic | 30.0% |
| ! | AAGCAGTGTTACTATTGTTA+TGG | - | chr2_1:79510708-79510727 | None:intergenic | 30.0% |
| TCTATAAACAGTTAGGTGAA+AGG | + | chr2_1:79510766-79510785 | Msa0228120:intron | 30.0% | |
| !! | CATTCTAAAACATCTGTTTC+CGG | + | chr2_1:79510797-79510816 | Msa0228120:CDS | 30.0% |
| !!! | CGTTCAGGTTAGTTTTATTT+AGG | + | chr2_1:79510877-79510896 | Msa0228120:intron | 30.0% |
| GTTAAATGACAAGTACTTTC+CGG | - | chr2_1:79511453-79511472 | None:intergenic | 30.0% | |
| ATACACAAAAAACCTAAGCT+CGG | + | chr2_1:79511529-79511548 | Msa0228120:intron | 30.0% | |
| TGTATTTATAAACCGAGCTT+AGG | - | chr2_1:79511544-79511563 | None:intergenic | 30.0% | |
| ! | CATATCTTTTCCCTTATTCT+CGG | + | chr2_1:79511564-79511583 | Msa0228120:intron | 30.0% |
| TTAGTATATATGTCGAGCTT+AGG | - | chr2_1:79511647-79511666 | None:intergenic | 30.0% | |
| GAAAGTCAAATGCATAAAAC+AGG | - | chr2_1:79512460-79512479 | None:intergenic | 30.0% | |
| CTGTTAACTTTCTCTTGTTA+CGG | + | chr2_1:79512502-79512521 | Msa0228120:intron | 30.0% | |
| GCATCATATATATGAAAAGC+AGG | + | chr2_1:79512567-79512586 | Msa0228120:intron | 30.0% | |
| TCATATATATGAAAAGCAGG+CGG | + | chr2_1:79512570-79512589 | Msa0228120:intron | 30.0% | |
| TCCTAAATCTGTAGAATTGA+AGG | + | chr2_1:79512594-79512613 | Msa0228120:CDS | 30.0% | |
| TCCTTCAATTCTACAGATTT+AGG | - | chr2_1:79512598-79512617 | None:intergenic | 30.0% | |
| TCTGTAGAATTGAAGGAAAT+TGG | + | chr2_1:79512601-79512620 | Msa0228120:CDS | 30.0% | |
| TATAGCATATACGCAGTTTA+TGG | + | chr2_1:79513020-79513039 | Msa0228120:intron | 30.0% | |
| !!! | AAATTTTTTGAAATCGACGC+AGG | + | chr2_1:79513160-79513179 | Msa0228120:intron | 30.0% |
| !! | GAAAAGCTGAAATTTTGGAA+TGG | + | chr2_1:79513422-79513441 | Msa0228120:three_prime_UTR | 30.0% |
| CGATTCATTCTTTCAGCATT+GGG | - | chr2_1:79508002-79508021 | None:intergenic | 35.0% | |
| ACGATTCATTCTTTCAGCAT+TGG | - | chr2_1:79508003-79508022 | None:intergenic | 35.0% | |
| AATGCTGAAAGAATGAATCG+TGG | + | chr2_1:79508002-79508021 | Msa0228120:CDS | 35.0% | |
| AACGGAGGATAAAATGGTAA+AGG | - | chr2_1:79508042-79508061 | None:intergenic | 35.0% | |
| CTGTTGCGTTAGCAAAAATA+TGG | + | chr2_1:79508193-79508212 | Msa0228120:intron | 35.0% | |
| CATAACATCCTCTTTGAATC+AGG | + | chr2_1:79508242-79508261 | Msa0228120:intron | 35.0% | |
| ! | ATAATGGAACATAGTGGTCT+GGG | - | chr2_1:79508440-79508459 | None:intergenic | 35.0% |
| ! | AATAATGGAACATAGTGGTC+TGG | - | chr2_1:79508441-79508460 | None:intergenic | 35.0% |
| ! | GAGATATGGTTTTCTTGCTA+TGG | - | chr2_1:79508480-79508499 | None:intergenic | 35.0% |
| ATGACTCTGTTTATTCGATC+TGG | + | chr2_1:79508813-79508832 | Msa0228120:intron | 35.0% | |
| AACCAAAAACAATGTTGGAC+AGG | - | chr2_1:79508856-79508875 | None:intergenic | 35.0% | |
| CATCTGTATAGTCATGTGAT+CGG | - | chr2_1:79509040-79509059 | None:intergenic | 35.0% | |
| AAATATGCAGTAGGACCATA+TGG | - | chr2_1:79509119-79509138 | None:intergenic | 35.0% | |
| ! | TATGGTCCTACTGCATATTT+TGG | + | chr2_1:79509119-79509138 | Msa0228120:CDS | 35.0% |
| ATAATATGCGGATAAGCTTC+GGG | - | chr2_1:79509274-79509293 | None:intergenic | 35.0% | |
| TCAGAAGGTCGGATAAATAA+CGG | - | chr2_1:79509393-79509412 | None:intergenic | 35.0% | |
| TCGGAAAATTATCAGAAGGT+CGG | - | chr2_1:79509404-79509423 | None:intergenic | 35.0% | |
| TGAGTCGGAAAATTATCAGA+AGG | - | chr2_1:79509408-79509427 | None:intergenic | 35.0% | |
| !! | ATTTGGAGAATGGTTTTACG+AGG | + | chr2_1:79509588-79509607 | Msa0228120:intron | 35.0% |
| AAGAAACAGATCAATCATGC+AGG | - | chr2_1:79509623-79509642 | None:intergenic | 35.0% | |
| ! | ATTGATCTGTTTCTTGCAAG+CGG | + | chr2_1:79509628-79509647 | Msa0228120:intron | 35.0% |
| ACAAGTCTAGCAATCAATCA+TGG | + | chr2_1:79509684-79509703 | Msa0228120:intron | 35.0% | |
| CTTCAATCATAATTTGGACC+AGG | - | chr2_1:79509727-79509746 | None:intergenic | 35.0% | |
| CACTTAAATTATGCTCTTGC+AGG | - | chr2_1:79509768-79509787 | None:intergenic | 35.0% | |
| !!! | GTGTTGCACATAGTGTTTTT+TGG | + | chr2_1:79509785-79509804 | Msa0228120:intron | 35.0% |
| AAGAGAACAAATCAGAATGC+AGG | + | chr2_1:79509833-79509852 | Msa0228120:intron | 35.0% | |
| AGCATCTAATGAGGAAAAGA+TGG | + | chr2_1:79509859-79509878 | Msa0228120:intron | 35.0% | |
| TTATTATTAGGGGCTTCTAG+GGG | - | chr2_1:79509926-79509945 | None:intergenic | 35.0% | |
| CTTATTATTAGGGGCTTCTA+GGG | - | chr2_1:79509927-79509946 | None:intergenic | 35.0% | |
| TCTTATTATTAGGGGCTTCT+AGG | - | chr2_1:79509928-79509947 | None:intergenic | 35.0% | |
| TCGAGACGTGATTTATATTG+AGG | - | chr2_1:79510029-79510048 | None:intergenic | 35.0% | |
| TTATATGCTGTGTACTCATG+GGG | + | chr2_1:79510189-79510208 | Msa0228120:intron | 35.0% | |
| TTTCCAAATTGACCTAAGGT+CGG | - | chr2_1:79510246-79510265 | None:intergenic | 35.0% | |
| ! | GAAGCACTTATAAGGTAGTT+GGG | - | chr2_1:79510419-79510438 | None:intergenic | 35.0% |
| !! | AGAAGCACTTATAAGGTAGT+TGG | - | chr2_1:79510420-79510439 | None:intergenic | 35.0% |
| !! | ATACTGCTTTTGTGCCAATT+TGG | + | chr2_1:79510488-79510507 | Msa0228120:intron | 35.0% |
| AAGCTGTTTACAGTCCAAAT+TGG | - | chr2_1:79510505-79510524 | None:intergenic | 35.0% | |
| AATTTGGACTGTAAACAGCT+TGG | + | chr2_1:79510504-79510523 | Msa0228120:intron | 35.0% | |
| ! | GTGTCACTAGTATTACAGAA+AGG | - | chr2_1:79510579-79510598 | None:intergenic | 35.0% |
| !! | ATACGTTTTGTGTCTGGTTT+TGG | - | chr2_1:79510825-79510844 | None:intergenic | 35.0% |
| ATAGATTCTACTGAGTCACA+GGG | - | chr2_1:79510989-79511008 | None:intergenic | 35.0% | |
| AAAAAATCAGAAATGCCACG+TGG | - | chr2_1:79511081-79511100 | None:intergenic | 35.0% | |
| CTTGTCATTCAACCGTATAA+CGG | + | chr2_1:79511404-79511423 | Msa0228120:intron | 35.0% | |
| ! | CTTGTCATTTAACCTAAGCT+CGG | + | chr2_1:79511460-79511479 | Msa0228120:intron | 35.0% |
| ! | TTTTTGTGTATTCCGAGCTT+AGG | - | chr2_1:79511475-79511494 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGGGGTACACG+TGG | - | chr2_1:79512217-79512236 | None:intergenic | 35.0% |
| !!! | CTGTAATATAGGCCACTTTT+GGG | - | chr2_1:79512405-79512424 | None:intergenic | 35.0% |
| CAAAAGTGGCCTATATTACA+GGG | + | chr2_1:79512404-79512423 | Msa0228120:intron | 35.0% | |
| AAAAGTGGCCTATATTACAG+GGG | + | chr2_1:79512405-79512424 | Msa0228120:intron | 35.0% | |
| !!! | GTTTTTAGCCCCTGTAATAT+AGG | - | chr2_1:79512416-79512435 | None:intergenic | 35.0% |
| ATATTGTATCTGCTGCATAC+AGG | + | chr2_1:79512545-79512564 | Msa0228120:intron | 35.0% | |
| CATATATATGAAAAGCAGGC+GGG | + | chr2_1:79512571-79512590 | Msa0228120:intron | 35.0% | |
| !!! | TTTTGAGTTGCGTCTATATC+AGG | + | chr2_1:79512630-79512649 | Msa0228120:CDS | 35.0% |
| TGAATATATTGTGCTGCAAC+TGG | + | chr2_1:79512761-79512780 | Msa0228120:intron | 35.0% | |
| GAATATATTGTGCTGCAACT+GGG | + | chr2_1:79512762-79512781 | Msa0228120:intron | 35.0% | |
| TATTTCTTGCGTCTCTAACT+TGG | + | chr2_1:79512933-79512952 | Msa0228120:intron | 35.0% | |
| ! | CTGCAAAAGGTTTCAGTTTT+TGG | - | chr2_1:79513246-79513265 | None:intergenic | 35.0% |
| GCAGATAAAATTAGGAACAG+TGG | + | chr2_1:79513262-79513281 | Msa0228120:intron | 35.0% | |
| ACGACACAAACAAGAGAAAA+TGG | + | chr2_1:79513467-79513486 | Msa0228120:three_prime_UTR | 35.0% | |
| CTTCTTTGACAAGTAGCAAG+AGG | - | chr2_1:79508353-79508372 | None:intergenic | 40.0% | |
| TTGACACATACATGAGGAAC+AGG | - | chr2_1:79508734-79508753 | None:intergenic | 40.0% | |
| ! | TGCCTGTCCAACATTGTTTT+TGG | + | chr2_1:79508851-79508870 | Msa0228120:intron | 40.0% |
| ATTAGAGACAGAAAAGCCGT+TGG | + | chr2_1:79509241-79509260 | Msa0228120:CDS | 40.0% | |
| !! | TCGGATAAATAACGGGTGAA+AGG | - | chr2_1:79509385-79509404 | None:intergenic | 40.0% |
| CAGAAGGTCGGATAAATAAC+GGG | - | chr2_1:79509392-79509411 | None:intergenic | 40.0% | |
| ! | TTTCCGACTCAGAGTATCAT+TGG | + | chr2_1:79509417-79509436 | Msa0228120:intron | 40.0% |
| GAACCAATGATACTCTGAGT+CGG | - | chr2_1:79509423-79509442 | None:intergenic | 40.0% | |
| ! | TCAATCATGGTTCTGTTGAC+AGG | + | chr2_1:79509697-79509716 | Msa0228120:intron | 40.0% |
| TAAATCACGTCTCGAAGACT+TGG | + | chr2_1:79510034-79510053 | Msa0228120:intron | 40.0% | |
| !! | AAAGCATTTTTCCACGAGGT+CGG | - | chr2_1:79510096-79510115 | None:intergenic | 40.0% |
| !! | CAACAAAGCATTTTTCCACG+AGG | - | chr2_1:79510100-79510119 | None:intergenic | 40.0% |
| TTGTGTTCATCCACTTGTAC+TGG | + | chr2_1:79510133-79510152 | Msa0228120:intron | 40.0% | |
| TATCCGACCTTAGGTCAATT+TGG | + | chr2_1:79510240-79510259 | Msa0228120:intron | 40.0% | |
| AAGATTAGGTGCTCTATCAC+TGG | + | chr2_1:79510265-79510284 | Msa0228120:intron | 40.0% | |
| CTCTATCACTGGAATACTTG+TGG | + | chr2_1:79510276-79510295 | Msa0228120:intron | 40.0% | |
| CAATGTGAACATATGCTTGG+TGG | - | chr2_1:79510319-79510338 | None:intergenic | 40.0% | |
| ! | ACTGTAAACAGCTTGGTGAA+AGG | + | chr2_1:79510511-79510530 | Msa0228120:intron | 40.0% |
| ! | CTGTAAACAGCTTGGTGAAA+GGG | + | chr2_1:79510512-79510531 | Msa0228120:intron | 40.0% |
| !! | AGTAACACTGCTTTTGTGTC+AGG | + | chr2_1:79510715-79510734 | Msa0228120:intron | 40.0% |
| ! | GTGACAATACGTTTTGTGTC+TGG | - | chr2_1:79510831-79510850 | None:intergenic | 40.0% |
| CGAGATATAGTCAGACTTGT+TGG | - | chr2_1:79510859-79510878 | None:intergenic | 40.0% | |
| AGTCTGACTATATCTCGTTC+AGG | + | chr2_1:79510862-79510881 | Msa0228120:intron | 40.0% | |
| TAGATTCTACTGAGTCACAG+GGG | - | chr2_1:79510988-79511007 | None:intergenic | 40.0% | |
| CATAGATTCTACTGAGTCAC+AGG | - | chr2_1:79510990-79511009 | None:intergenic | 40.0% | |
| GTGACTCAGTAGAATCTATG+AGG | + | chr2_1:79510990-79511009 | Msa0228120:intron | 40.0% | |
| ACTCAGTAGAATCTATGAGG+TGG | + | chr2_1:79510993-79511012 | Msa0228120:intron | 40.0% | |
| TGGACATTCATTTACACACG+TGG | - | chr2_1:79511061-79511080 | None:intergenic | 40.0% | |
| TGTGTAAATGAATGTCCACG+TGG | + | chr2_1:79511063-79511082 | Msa0228120:intron | 40.0% | |
| !! | TCAAAGATTCTGCTGACTCA+AGG | + | chr2_1:79512304-79512323 | Msa0228120:intron | 40.0% |
| !! | CAAAGATTCTGCTGACTCAA+GGG | + | chr2_1:79512305-79512324 | Msa0228120:intron | 40.0% |
| !! | AAAGATTCTGCTGACTCAAG+GGG | + | chr2_1:79512306-79512325 | Msa0228120:intron | 40.0% |
| !! | CCTGTAATATAGGCCACTTT+TGG | - | chr2_1:79512406-79512425 | None:intergenic | 40.0% |
| CCAAAAGTGGCCTATATTAC+AGG | + | chr2_1:79512403-79512422 | Msa0228120:intron | 40.0% | |
| TATAGACGCAACTCAAAACG+TGG | - | chr2_1:79512628-79512647 | None:intergenic | 40.0% | |
| TTTCCGATCTGTTCTTGAGT+TGG | + | chr2_1:79512831-79512850 | Msa0228120:intron | 40.0% | |
| AGACCAACTCAAGAACAGAT+CGG | - | chr2_1:79512837-79512856 | None:intergenic | 40.0% | |
| GACCTTACATGAACACTACA+CGG | + | chr2_1:79513318-79513337 | Msa0228120:CDS | 40.0% | |
| TTCCGTGTAGTGTTCATGTA+AGG | - | chr2_1:79513323-79513342 | None:intergenic | 40.0% | |
| GAGGAACTTTCTGTGATTGA+TGG | + | chr2_1:79513343-79513362 | Msa0228120:exon | 40.0% | |
| GAACTTTCTGTGATTGATGG+AGG | + | chr2_1:79513346-79513365 | Msa0228120:exon | 40.0% | |
| TTGAGACACTAAACTCAGCA+AGG | + | chr2_1:79513571-79513590 | Msa0228120:three_prime_UTR | 40.0% | |
| TGAGACACTAAACTCAGCAA+GGG | + | chr2_1:79513572-79513591 | Msa0228120:three_prime_UTR | 40.0% | |
| GCTGAAAGAATGAATCGTGG+TGG | + | chr2_1:79508005-79508024 | Msa0228120:CDS | 45.0% | |
| AAGAATGAATCGTGGTGGTC+AGG | + | chr2_1:79508010-79508029 | Msa0228120:CDS | 45.0% | |
| GACAAGTAGCAAGAGGAGTA+AGG | - | chr2_1:79508346-79508365 | None:intergenic | 45.0% | |
| ATCTTGGTTCATGAACACCG+AGG | + | chr2_1:79509062-79509081 | Msa0228120:CDS | 45.0% | |
| TTAAACCATCTGGCACACCT+CGG | - | chr2_1:79509082-79509101 | None:intergenic | 45.0% | |
| GCTAATATGCTGTTCCTTGC+AGG | + | chr2_1:79509204-79509223 | Msa0228120:intron | 45.0% | |
| TTCATGCCTTGTAACCTGCA+AGG | - | chr2_1:79509221-79509240 | None:intergenic | 45.0% | |
| ACCGTGATGTCCATAGCATT+TGG | + | chr2_1:79509544-79509563 | Msa0228120:intron | 45.0% | |
| GCCAAATGCTATGGACATCA+CGG | - | chr2_1:79509548-79509567 | None:intergenic | 45.0% | |
| AGATCAATCATGCAGGAGAC+TGG | - | chr2_1:79509616-79509635 | None:intergenic | 45.0% | |
| TTATGCTCTTGCAGGCGATT+AGG | - | chr2_1:79509760-79509779 | None:intergenic | 45.0% | |
| TGCAGGAGTAGCATCTAATG+AGG | + | chr2_1:79509850-79509869 | Msa0228120:intron | 45.0% | |
| ACGTGTACAGTAGTTTAGCC+AGG | + | chr2_1:79509889-79509908 | Msa0228120:intron | 45.0% | |
| GATTCATATAACCGACCTCG+TGG | + | chr2_1:79510082-79510101 | Msa0228120:intron | 45.0% | |
| ATAACACAGGCCAGTACAAG+TGG | - | chr2_1:79510146-79510165 | None:intergenic | 45.0% | |
| !!! | TTTGTGTCTGGTTTTGGCAC+CGG | - | chr2_1:79510819-79510838 | None:intergenic | 45.0% |
| GCGTGACACGTCATCAAAAA+AGG | + | chr2_1:79512264-79512283 | Msa0228120:intron | 45.0% | |
| AGTCAGCAGAATCTTTGACG+TGG | - | chr2_1:79512302-79512321 | None:intergenic | 45.0% | |
| ACATGAACACTACACGGAAG+AGG | + | chr2_1:79513324-79513343 | Msa0228120:CDS | 45.0% | |
| ! | TGTTACTGTGCTGTTAGTGC+AGG | + | chr2_1:79513384-79513403 | Msa0228120:three_prime_UTR | 45.0% |
| !! | TTAATGAATTATTATATTTA+AGG | - | chr2_1:79508899-79508918 | None:intergenic | 5.0% |
| !!! | TGAAATTTTTTTAAAAAATA+CGG | - | chr2_1:79512022-79512041 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr2_1:79512067-79512086 | None:intergenic | 5.0% |
| !! | TAAAAAAAATTAAAAAATTC+TGG | - | chr2_1:79512176-79512195 | None:intergenic | 5.0% |
| !!! | TATTTTATATTTTTTTTTTG+GGG | - | chr2_1:79512226-79512245 | None:intergenic | 5.0% |
| ATGAATCGTGGTGGTCAGGT+TGG | + | chr2_1:79508014-79508033 | Msa0228120:intron | 50.0% | |
| TTCACGGGCCTGATTCAAAG+AGG | - | chr2_1:79508253-79508272 | None:intergenic | 50.0% | |
| GCTGTTCCTTGCAGGTTACA+AGG | + | chr2_1:79509212-79509231 | Msa0228120:intron | 50.0% | |
| GTTCTGTTGACAGGTTACCC+TGG | + | chr2_1:79509706-79509725 | Msa0228120:intron | 50.0% | |
| ! | TTATTAGGGGCTTCTAGGGG+TGG | - | chr2_1:79509923-79509942 | None:intergenic | 50.0% |
| ACAGGGGCTAAACCCAAAAG+TGG | + | chr2_1:79512390-79512409 | Msa0228120:intron | 50.0% | |
| AGCTTCGGGCATGGTTCCAA+CGG | - | chr2_1:79509260-79509279 | None:intergenic | 55.0% | |
| ATGCGGATAAGCTTCGGGCA+TGG | - | chr2_1:79509269-79509288 | None:intergenic | 55.0% | |
| GCTCTTGCAGGCGATTAGGT+GGG | - | chr2_1:79509756-79509775 | None:intergenic | 55.0% | |
| TGCTCTTGCAGGCGATTAGG+TGG | - | chr2_1:79509757-79509776 | None:intergenic | 55.0% | |
| TACTGAGTCACAGGGGTCAG+GGG | - | chr2_1:79510981-79511000 | None:intergenic | 55.0% | |
| CTACTGAGTCACAGGGGTCA+GGG | - | chr2_1:79510982-79511001 | None:intergenic | 55.0% | |
| TCTACTGAGTCACAGGGGTC+AGG | - | chr2_1:79510983-79511002 | None:intergenic | 55.0% | |
| !! | TCTGCTGACTCAAGGGGTTC+AGG | + | chr2_1:79512312-79512331 | Msa0228120:intron | 55.0% |
| !! | CTGCTGACTCAAGGGGTTCA+GGG | + | chr2_1:79512313-79512332 | Msa0228120:intron | 55.0% |
| !! | TGCTGACTCAAGGGGTTCAG+GGG | + | chr2_1:79512314-79512333 | Msa0228120:intron | 55.0% |
| GAACACCGAGGTGTGCCAGA+TGG | + | chr2_1:79509074-79509093 | Msa0228120:CDS | 60.0% | |
| CTAGGGGTGGTCTTCTCACC+TGG | - | chr2_1:79509910-79509929 | None:intergenic | 60.0% | |
| !! | TCTATGAGGTGGCGCTGACG+TGG | + | chr2_1:79511004-79511023 | Msa0228120:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 79507981 | 79513733 | 79507981 | ID=Msa0228120;Name=Msa0228120 |
| chr2_1 | mRNA | 79507981 | 79513733 | 79507981 | ID=Msa0228120-mRNA-1;Parent=Msa0228120;Name=Msa0228120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.42|0.85|0.66|0.57|7|349|169 |
| chr2_1 | exon | 79507981 | 79508031 | 79507981 | ID=Msa0228120-mRNA-1:exon:24191;Parent=Msa0228120-mRNA-1 |
| chr2_1 | exon | 79509011 | 79509154 | 79509011 | ID=Msa0228120-mRNA-1:exon:24192;Parent=Msa0228120-mRNA-1 |
| chr2_1 | exon | 79509226 | 79509315 | 79509226 | ID=Msa0228120-mRNA-1:exon:24193;Parent=Msa0228120-mRNA-1 |
| chr2_1 | exon | 79510777 | 79510845 | 79510777 | ID=Msa0228120-mRNA-1:exon:24194;Parent=Msa0228120-mRNA-1 |
| chr2_1 | exon | 79512589 | 79512651 | 79512589 | ID=Msa0228120-mRNA-1:exon:24195;Parent=Msa0228120-mRNA-1 |
| chr2_1 | exon | 79513266 | 79513685 | 79513266 | ID=Msa0228120-mRNA-1:exon:24196;Parent=Msa0228120-mRNA-1 |
| chr2_1 | exon | 79513712 | 79513733 | 79513712 | ID=Msa0228120-mRNA-1:exon:24197;Parent=Msa0228120-mRNA-1 |
| chr2_1 | CDS | 79507981 | 79508031 | 79507981 | ID=Msa0228120-mRNA-1:cds;Parent=Msa0228120-mRNA-1 |
| chr2_1 | CDS | 79509011 | 79509154 | 79509011 | ID=Msa0228120-mRNA-1:cds;Parent=Msa0228120-mRNA-1 |
| chr2_1 | CDS | 79509226 | 79509315 | 79509226 | ID=Msa0228120-mRNA-1:cds;Parent=Msa0228120-mRNA-1 |
| chr2_1 | CDS | 79510777 | 79510845 | 79510777 | ID=Msa0228120-mRNA-1:cds;Parent=Msa0228120-mRNA-1 |
| chr2_1 | CDS | 79512589 | 79512651 | 79512589 | ID=Msa0228120-mRNA-1:cds;Parent=Msa0228120-mRNA-1 |
| chr2_1 | CDS | 79513266 | 79513358 | 79513266 | ID=Msa0228120-mRNA-1:cds;Parent=Msa0228120-mRNA-1 |
| chr2_1 | three_prime_UTR | 79513359 | 79513685 | 79513359 | ID=Msa0228120-mRNA-1:three_prime_utr;Parent=Msa0228120-mRNA-1 |
| chr2_1 | three_prime_UTR | 79513712 | 79513733 | 79513712 | ID=Msa0228120-mRNA-1:three_prime_utr;Parent=Msa0228120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
