Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228170 | XP_003598694.1 | 87.831 | 189 | 3 | 1 | 1 | 169 | 103 | 291 | 4.73e-114 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228170 | sp|O62518|YHPK_CAEEL | 49.735 | 189 | 72 | 3 | 1 | 169 | 98 | 283 | 6.61e-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228170 | G7IW56 | 87.831 | 189 | 3 | 1 | 1 | 169 | 103 | 291 | 2.26e-114 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0228170 | 0.827880 | 1.225214e-54 | -8.615850e-47 |
| Msa0010500 | Msa0228170 | 0.812147 | 4.907308e-51 | -8.615850e-47 |
| Msa0019390 | Msa0228170 | 0.812664 | 3.782937e-51 | -8.615850e-47 |
| Msa0037160 | Msa0228170 | 0.802957 | 4.384286e-49 | -8.615850e-47 |
| Msa0043660 | Msa0228170 | 0.832729 | 8.007518e-56 | -8.615850e-47 |
| Msa0047160 | Msa0228170 | 0.840284 | 9.542493e-58 | -8.615850e-47 |
| Msa0054440 | Msa0228170 | 0.829665 | 4.534458e-55 | -8.615850e-47 |
| Msa0090520 | Msa0228170 | 0.816841 | 4.491947e-52 | -8.615850e-47 |
| Msa0094470 | Msa0228170 | 0.830622 | 2.648165e-55 | -8.615850e-47 |
| Msa0115130 | Msa0228170 | 0.801767 | 7.709972e-49 | -8.615850e-47 |
| Msa0127020 | Msa0228170 | 0.810974 | 8.824436e-51 | -8.615850e-47 |
| Msa0137550 | Msa0228170 | 0.829216 | 5.828444e-55 | -8.615850e-47 |
| Msa0137990 | Msa0228170 | 0.817597 | 3.036816e-52 | -8.615850e-47 |
| Msa0146770 | Msa0228170 | 0.856144 | 3.924632e-62 | -8.615850e-47 |
| Msa0159170 | Msa0228170 | 0.806573 | 7.703428e-50 | -8.615850e-47 |
| Msa0169280 | Msa0228170 | 0.807201 | 5.673859e-50 | -8.615850e-47 |
| Msa0177210 | Msa0228170 | 0.809929 | 1.484120e-50 | -8.615850e-47 |
| Msa0183900 | Msa0228170 | 0.813917 | 2.008019e-51 | -8.615850e-47 |
| Msa0189300 | Msa0228170 | 0.863766 | 1.968585e-64 | -8.615850e-47 |
| Msa0228120 | Msa0228170 | 0.992688 | 8.051998e-195 | -8.615850e-47 |
| Msa0228170 | Msa0231660 | 0.852252 | 5.216219e-61 | -8.615850e-47 |
| Msa0228170 | Msa0279240 | 0.812572 | 3.962554e-51 | -8.615850e-47 |
| Msa0228170 | Msa0309750 | 0.828046 | 1.117596e-54 | -8.615850e-47 |
| Msa0228170 | Msa0388700 | 0.810408 | 1.169706e-50 | -8.615850e-47 |
| Msa0228170 | Msa0397070 | 0.893753 | 4.685618e-75 | -8.615850e-47 |
| Msa0228170 | Msa0422840 | 0.801382 | 9.243373e-49 | -8.615850e-47 |
| Msa0228170 | Msa0422920 | 0.802831 | 4.654470e-49 | -8.615850e-47 |
| Msa0228170 | Msa0467780 | 0.802172 | 6.365052e-49 | -8.615850e-47 |
| Msa0228170 | Msa0481030 | 0.836823 | 7.464072e-57 | -8.615850e-47 |
| Msa0228170 | Msa0481530 | 0.803013 | 4.267984e-49 | -8.615850e-47 |
| Msa0228170 | Msa0482130 | 0.835096 | 2.047158e-56 | -8.615850e-47 |
| Msa0228170 | Msa0489410 | 0.818938 | 1.509628e-52 | -8.615850e-47 |
| Msa0228170 | Msa0500470 | 0.826870 | 2.139162e-54 | -8.615850e-47 |
| Msa0228170 | Msa0502090 | 0.806442 | 8.210844e-50 | -8.615850e-47 |
| Msa0228170 | Msa0510930 | 0.825297 | 5.061819e-54 | -8.615850e-47 |
| Msa0228170 | Msa0511490 | 0.803865 | 2.842512e-49 | -8.615850e-47 |
| Msa0228170 | Msa0542090 | 0.821923 | 3.119465e-53 | -8.615850e-47 |
| Msa0228170 | Msa0542130 | 0.822479 | 2.317879e-53 | -8.615850e-47 |
| Msa0228170 | Msa0554290 | 0.827160 | 1.823303e-54 | -8.615850e-47 |
| Msa0228170 | Msa0555450 | 0.817017 | 4.101012e-52 | -8.615850e-47 |
| Msa0228170 | Msa0581280 | 0.842350 | 2.728534e-58 | -8.615850e-47 |
| Msa0228170 | Msa0603670 | 0.809492 | 1.842107e-50 | -8.615850e-47 |
| Msa0228170 | Msa0605000 | 0.832770 | 7.819439e-56 | -8.615850e-47 |
| Msa0228170 | Msa0612390 | 0.818400 | 1.999822e-52 | -8.615850e-47 |
| Msa0228170 | Msa0648780 | 0.821145 | 4.716753e-53 | -8.615850e-47 |
| Msa0228170 | Msa0685140 | 0.824532 | 7.672195e-54 | -8.615850e-47 |
| Msa0228170 | Msa0689260 | 0.821901 | 3.156270e-53 | -8.615850e-47 |
| Msa0228170 | Msa0691290 | 0.820121 | 8.109043e-53 | -8.615850e-47 |
| Msa0228170 | Msa0711780 | 0.821200 | 4.581510e-53 | -8.615850e-47 |
| Msa0228170 | Msa0715650 | 0.824417 | 8.164348e-54 | -8.615850e-47 |
| Msa0228170 | Msa0719420 | 0.836040 | 1.180902e-56 | -8.615850e-47 |
| Msa0228170 | Msa0719610 | 0.817294 | 3.552583e-52 | -8.615850e-47 |
| Msa0228170 | Msa0763330 | 0.850050 | 2.181434e-60 | -8.615850e-47 |
| Msa0228170 | Msa0772480 | 0.838120 | 3.473462e-57 | -8.615850e-47 |
| Msa0228170 | Msa0789680 | 0.837295 | 5.655111e-57 | -8.615850e-47 |
| Msa0228170 | Msa0794670 | 0.832252 | 1.051127e-55 | -8.615850e-47 |
| Msa0228170 | Msa0798440 | 0.844329 | 8.086230e-59 | -8.615850e-47 |
| Msa0228170 | Msa0802410 | 0.843771 | 1.141216e-58 | -8.615850e-47 |
| Msa0228170 | Msa0819060 | 0.817237 | 3.659838e-52 | -8.615850e-47 |
| Msa0228170 | Msa0827280 | 0.823419 | 1.399142e-53 | -8.615850e-47 |
| Msa0228170 | Msa0830540 | 0.849695 | 2.740917e-60 | -8.615850e-47 |
| Msa0228170 | Msa0859180 | 0.829140 | 6.079497e-55 | -8.615850e-47 |
| Msa0228170 | Msa0925770 | 0.819768 | 9.765121e-53 | -8.615850e-47 |
| Msa0228170 | Msa0945440 | 0.828233 | 1.007196e-54 | -8.615850e-47 |
| Msa0228170 | Msa0970530 | 0.808341 | 3.248693e-50 | -8.615850e-47 |
| Msa0228170 | Msa0989540 | 0.816817 | 4.548592e-52 | -8.615850e-47 |
| Msa0228170 | Msa1006840 | 0.807478 | 4.957790e-50 | -8.615850e-47 |
| Msa0228170 | Msa1077030 | 0.811677 | 6.210747e-51 | -8.615850e-47 |
| Msa0228170 | Msa1089320 | 0.826502 | 2.619796e-54 | -8.615850e-47 |
| Msa0228170 | Msa1144040 | 0.800772 | 1.231985e-48 | -8.615850e-47 |
| Msa0228170 | Msa1160590 | 0.811335 | 7.370490e-51 | -8.615850e-47 |
| Msa0228170 | Msa1209200 | 0.829791 | 4.223793e-55 | -8.615850e-47 |
| Msa0228170 | Msa1209260 | 0.824092 | 9.734938e-54 | -8.615850e-47 |
| Msa0228170 | Msa1209760 | 0.835388 | 1.728025e-56 | -8.615850e-47 |
| Msa0228170 | Msa1218500 | 0.806337 | 8.638748e-50 | -8.615850e-47 |
| Msa0228170 | Msa1265630 | 0.839054 | 1.992975e-57 | -8.615850e-47 |
| Msa0228170 | Msa1307180 | 0.817751 | 2.803308e-52 | -8.615850e-47 |
| Msa0228170 | Msa1316360 | 0.827567 | 1.456822e-54 | -8.615850e-47 |
| Msa0228170 | Msa1332590 | 0.812193 | 4.794094e-51 | -8.615850e-47 |
| Msa0228170 | Msa1355700 | 0.823276 | 1.511010e-53 | -8.615850e-47 |
| Msa0228170 | Msa1358250 | 0.822862 | 1.887531e-53 | -8.615850e-47 |
| Msa0228170 | Msa1359970 | 0.802952 | 4.394032e-49 | -8.615850e-47 |
| Msa0228170 | Msa1364210 | 0.826520 | 2.592737e-54 | -8.615850e-47 |
| Msa0228170 | Msa1392780 | 0.803600 | 3.225919e-49 | -8.615850e-47 |
| Msa0228170 | Msa1394290 | 0.838694 | 2.470051e-57 | -8.615850e-47 |
| Msa0228170 | Msa1419870 | 0.816461 | 5.465655e-52 | -8.615850e-47 |
| Msa0228170 | Msa1436520 | 0.813253 | 2.811301e-51 | -8.615850e-47 |
| Msa0228170 | Msa1457920 | 0.847323 | 1.243715e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228170 | MtrunA17_Chr3g0084381 | 87.831 | 189 | 3 | 1 | 1 | 169 | 103 | 291 | 4.35e-118 | 335 |
| Msa0228170 | MtrunA17_Chr8g0345651 | 30.047 | 213 | 102 | 3 | 1 | 169 | 145 | 354 | 9.77e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228170 | AT1G63780.1 | 65.263 | 190 | 45 | 1 | 1 | 169 | 103 | 292 | 1.72e-91 | 268 |
| Msa0228170 | AT4G01560.1 | 33.333 | 201 | 98 | 4 | 1 | 169 | 147 | 343 | 2.39e-27 | 105 |
Find 39 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTCCTACTGCATATTT+TGG | 0.152617 | 2_1:+79551398 | Msa0228170:CDS |
| TAGAAGAAAAGCTGAAATTT+TGG | 0.216351 | 2_1:+79555696 | Msa0228170:three_prime_UTR |
| TCCTTCAATTCTACAGATTT+AGG | 0.221306 | 2_1:-79554874 | None:intergenic |
| CATTCTAAAACATCTGTTTC+CGG | 0.297484 | 2_1:+79553076 | Msa0228170:CDS |
| ACGACACAAACAAGAGAAAA+TGG | 0.341632 | 2_1:+79555746 | Msa0228170:three_prime_UTR |
| CGATTCATTCTTTCAGCATT+GGG | 0.364675 | 2_1:-79550278 | None:intergenic |
| AATAATATGCGGATAAGCTT+CGG | 0.371784 | 2_1:-79551551 | None:intergenic |
| GAGGAACTTTCTGTGATTGA+TGG | 0.376034 | 2_1:+79555622 | Msa0228170:exon |
| TCTGTAGAATTGAAGGAAAT+TGG | 0.387754 | 2_1:+79554880 | Msa0228170:CDS |
| ATAGTTTGTCATCTACCATA+TGG | 0.392644 | 2_1:+79551380 | Msa0228170:CDS |
| TGACTATACAGATGTTATCT+TGG | 0.414988 | 2_1:+79551325 | Msa0228170:CDS |
| ATAATATGCGGATAAGCTTC+GGG | 0.448452 | 2_1:-79551550 | None:intergenic |
| TCCTAAATCTGTAGAATTGA+AGG | 0.458118 | 2_1:+79554873 | Msa0228170:CDS |
| ACGATTCATTCTTTCAGCAT+TGG | 0.464351 | 2_1:-79550279 | None:intergenic |
| TGACAAACTATTAAACCATC+TGG | 0.466080 | 2_1:-79551368 | None:intergenic |
| GCTGTTCCTTGCAGGTTACA+AGG | 0.469779 | 2_1:+79551491 | Msa0228170:intron |
| AAATATGCAGTAGGACCATA+TGG | 0.471997 | 2_1:-79551395 | None:intergenic |
| TTCCGTGTAGTGTTCATGTA+AGG | 0.489124 | 2_1:-79555599 | None:intergenic |
| AAGAATGAATCGTGGTGGTC+AGG | 0.523960 | 2_1:+79550289 | Msa0228170:CDS |
| AGCTTCGGGCATGGTTCCAA+CGG | 0.525645 | 2_1:-79551536 | None:intergenic |
| GCAGATAAAATTAGGAACAG+TGG | 0.540090 | 2_1:+79555541 | Msa0228170:intron |
| TCTATAAACAGTTAGGTGAA+AGG | 0.554062 | 2_1:+79553045 | Msa0228170:intron |
| ACATGAACACTACACGGAAG+AGG | 0.568800 | 2_1:+79555603 | Msa0228170:CDS |
| TGTTACTGTGCTGTTAGTGC+AGG | 0.580733 | 2_1:+79555663 | Msa0228170:three_prime_UTR |
| AGTAATCCAAAATATGCAGT+AGG | 0.590553 | 2_1:-79551404 | None:intergenic |
| TTGAGACACTAAACTCAGCA+AGG | 0.597537 | 2_1:+79555850 | Msa0228170:three_prime_UTR |
| GAACTTTCTGTGATTGATGG+AGG | 0.597778 | 2_1:+79555625 | Msa0228170:exon |
| ATTAGAGACAGAAAAGCCGT+TGG | 0.603528 | 2_1:+79551520 | Msa0228170:CDS |
| CATCTGTATAGTCATGTGAT+CGG | 0.609305 | 2_1:-79551316 | None:intergenic |
| ATGCGGATAAGCTTCGGGCA+TGG | 0.635152 | 2_1:-79551545 | None:intergenic |
| GAACACCGAGGTGTGCCAGA+TGG | 0.638084 | 2_1:+79551353 | Msa0228170:CDS |
| GACCTTACATGAACACTACA+CGG | 0.644746 | 2_1:+79555597 | Msa0228170:CDS |
| TGAGACACTAAACTCAGCAA+GGG | 0.685905 | 2_1:+79555851 | Msa0228170:three_prime_UTR |
| TTAAACCATCTGGCACACCT+CGG | 0.692377 | 2_1:-79551358 | None:intergenic |
| TATAGACGCAACTCAAAACG+TGG | 0.698081 | 2_1:-79554904 | None:intergenic |
| AAATTATCAAGAATAATATG+CGG | 0.698309 | 2_1:-79551562 | None:intergenic |
| GCTGAAAGAATGAATCGTGG+TGG | 0.764437 | 2_1:+79550284 | Msa0228170:CDS |
| AATGCTGAAAGAATGAATCG+TGG | 0.776928 | 2_1:+79550281 | Msa0228170:CDS |
| ATCTTGGTTCATGAACACCG+AGG | 0.787086 | 2_1:+79551341 | Msa0228170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAAAAATAAAATA+TGG | + | chr2_1:79553540-79553559 | Msa0228170:intron | 0.0% |
| !!! | TTATTTTATATTTTTTTTTT+GGG | - | chr2_1:79554506-79554525 | None:intergenic | 0.0% |
| !!! | TTTATTTTATATTTTTTTTT+TGG | - | chr2_1:79554507-79554526 | None:intergenic | 0.0% |
| !! | TTAAAAACATTAATAAATCA+GGG | - | chr2_1:79550957-79550976 | None:intergenic | 10.0% |
| !! | ATTAAAAACATTAATAAATC+AGG | - | chr2_1:79550958-79550977 | None:intergenic | 10.0% |
| !!! | AATATCATCATTATTTTTTT+CGG | - | chr2_1:79551256-79551275 | None:intergenic | 10.0% |
| !! | AGCATATAATTAAAAAAATA+TGG | - | chr2_1:79552457-79552476 | None:intergenic | 10.0% |
| !!! | TAAAAAAAAAAATTTTACAG+GGG | - | chr2_1:79553199-79553218 | None:intergenic | 10.0% |
| !!! | CTAAAAAAAAAAATTTTACA+GGG | - | chr2_1:79553200-79553219 | None:intergenic | 10.0% |
| !!! | TCTAAAAAAAAAAATTTTAC+AGG | - | chr2_1:79553201-79553220 | None:intergenic | 10.0% |
| !!! | AAAACAAAAAAATTTTATGA+GGG | - | chr2_1:79554624-79554643 | None:intergenic | 10.0% |
| !!! | CTGAAATTTTTTAAAAAAAT+TGG | + | chr2_1:79553478-79553497 | Msa0228170:intron | 10.0% |
| !! | TATAAAAAATGAAAAAATTC+TGG | + | chr2_1:79553569-79553588 | Msa0228170:intron | 10.0% |
| !!! | AAGAAATTCATATTTTTTTT+CGG | + | chr2_1:79553654-79553673 | Msa0228170:intron | 10.0% |
| !!! | AAAATTCATATTTTTTTTTC+CGG | + | chr2_1:79553710-79553729 | Msa0228170:intron | 10.0% |
| !!! | AATTTCATTAGTATTTTTTT+CGG | - | chr2_1:79553780-79553799 | None:intergenic | 10.0% |
| !!! | TTATTTCCAAATTTTTTTTT+GGG | - | chr2_1:79553889-79553908 | None:intergenic | 10.0% |
| !!! | TTTATTTCCAAATTTTTTTT+TGG | - | chr2_1:79553890-79553909 | None:intergenic | 10.0% |
| !!! | CGAAATTTTATTTAAAATTA+TGG | - | chr2_1:79554109-79554128 | None:intergenic | 10.0% |
| !!! | AAAACAAAAAAATTTTATGA+GGG | + | chr2_1:79554624-79554643 | Msa0228170:intron | 10.0% |
| !!! | ATCTAAAAAAAAATTTTTAC+AGG | + | chr2_1:79554651-79554670 | Msa0228170:intron | 10.0% |
| !!! | TCTAAAAAAAAATTTTTACA+GGG | + | chr2_1:79554652-79554671 | Msa0228170:intron | 10.0% |
| !! | ATAAAATTAATAACAACAAA+GGG | - | chr2_1:79554964-79554983 | None:intergenic | 10.0% |
| !!! | ATAATACTTTTTTTTTTTGA+AGG | - | chr2_1:79555978-79555997 | None:intergenic | 10.0% |
| !! | AATATGGAAAATTGATTATT+TGG | + | chr2_1:79550363-79550382 | Msa0228170:intron | 15.0% |
| !! | ATATTAGTATATTAACTTCA+CGG | - | chr2_1:79550548-79550567 | None:intergenic | 15.0% |
| !! | TTAATATTAGATAATATGCT+TGG | + | chr2_1:79550578-79550597 | Msa0228170:intron | 15.0% |
| !! | TAATATTAGATAATATGCTT+GGG | + | chr2_1:79550579-79550598 | Msa0228170:intron | 15.0% |
| !!! | AAATAATTTATTTGCTATTG+TGG | + | chr2_1:79551032-79551051 | Msa0228170:intron | 15.0% |
| !! | AAATTATCAAGAATAATATG+CGG | - | chr2_1:79551565-79551584 | None:intergenic | 15.0% |
| !! | AGTATTATAATTGATATAGA+TGG | - | chr2_1:79552752-79552771 | None:intergenic | 15.0% |
| !!! | CAAAACAAAAAAATTTTATG+AGG | - | chr2_1:79554623-79554642 | None:intergenic | 15.0% |
| !!! | CTCATAAAATTTTTTTGTTT+TGG | + | chr2_1:79553228-79553247 | Msa0228170:intron | 15.0% |
| !!! | AAATTTTTTTGTTTTGGTTT+TGG | + | chr2_1:79553234-79553253 | Msa0228170:intron | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | + | chr2_1:79553510-79553529 | Msa0228170:intron | 15.0% |
| !!! | ATTTCATTAGTATTTTTTTC+GGG | - | chr2_1:79553779-79553798 | None:intergenic | 15.0% |
| !! | AAAATTCCCAAAAAAAAATT+TGG | + | chr2_1:79553880-79553899 | Msa0228170:intron | 15.0% |
| !! | TCTGAAAAAAATTAAAATTC+TGG | - | chr2_1:79554180-79554199 | None:intergenic | 15.0% |
| !! | CTGAAAATATTAAAAAATTC+TGG | - | chr2_1:79554396-79554415 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTGTTTTGGTTT+TGG | - | chr2_1:79553234-79553253 | None:intergenic | 15.0% |
| !!! | CTCATAAAATTTTTTTGTTT+TGG | - | chr2_1:79553228-79553247 | None:intergenic | 15.0% |
| !!! | CAAAACAAAAAAATTTTATG+AGG | + | chr2_1:79554623-79554642 | Msa0228170:intron | 15.0% |
| !!! | CTAAAAAAAAATTTTTACAG+GGG | + | chr2_1:79554653-79554672 | Msa0228170:intron | 15.0% |
| !! | ATAAAACAGGATAAATAAAA+GGG | - | chr2_1:79554726-79554745 | None:intergenic | 15.0% |
| !! | TAAAATTAATAACAACAAAG+GGG | - | chr2_1:79554963-79554982 | None:intergenic | 15.0% |
| !! | CATAAAATTAATAACAACAA+AGG | - | chr2_1:79554965-79554984 | None:intergenic | 15.0% |
| !!! | CTTTGTTGTTATTAATTTTA+TGG | + | chr2_1:79554963-79554982 | Msa0228170:intron | 15.0% |
| !!! | ATTTGGATTTTCAATTCTTT+TGG | - | chr2_1:79550444-79550463 | None:intergenic | 20.0% |
| !! | TATTAGTATATTAACTTCAC+GGG | - | chr2_1:79550547-79550566 | None:intergenic | 20.0% |
| !! | AATATTAGATAATATGCTTG+GGG | + | chr2_1:79550580-79550599 | Msa0228170:intron | 20.0% |
| !! | AAATGTAATGTGTAAAATGT+TGG | - | chr2_1:79550687-79550706 | None:intergenic | 20.0% |
| !!! | TTATGTAGAAAGTACAATAA+TGG | - | chr2_1:79550735-79550754 | None:intergenic | 20.0% |
| !! | ACAAAAACTATATAGAGATA+TGG | - | chr2_1:79550773-79550792 | None:intergenic | 20.0% |
| !!! | TTAATTTTCACACTGTTATT+TGG | + | chr2_1:79550973-79550992 | Msa0228170:intron | 20.0% |
| !!! | GTGTTAACTATATAGATTTT+AGG | + | chr2_1:79551451-79551470 | Msa0228170:intron | 20.0% |
| !!! | TCTTGATAATTTTGAAACTA+AGG | + | chr2_1:79551573-79551592 | Msa0228170:CDS | 20.0% |
| !!! | TTTGTACATACTAATTTTAC+TGG | + | chr2_1:79551626-79551645 | Msa0228170:intron | 20.0% |
| !! | ATGAAAATATAGAATGATTG+TGG | + | chr2_1:79551730-79551749 | Msa0228170:intron | 20.0% |
| !! | TAAGTAAAATTAAACGATGT+AGG | + | chr2_1:79551796-79551815 | Msa0228170:intron | 20.0% |
| !! | AACATTAGAAATACTTCATT+TGG | + | chr2_1:79551850-79551869 | Msa0228170:intron | 20.0% |
| !! | CTTAATCTTATTATGTAAGT+CGG | - | chr2_1:79552095-79552114 | None:intergenic | 20.0% |
| !! | TAATCAACTCTTATTATTAG+GGG | - | chr2_1:79552215-79552234 | None:intergenic | 20.0% |
| !! | CTAATCAACTCTTATTATTA+GGG | - | chr2_1:79552216-79552235 | None:intergenic | 20.0% |
| !! | TCTAATCAACTCTTATTATT+AGG | - | chr2_1:79552217-79552236 | None:intergenic | 20.0% |
| !! | TATATTGAGGTTATATTCAA+TGG | - | chr2_1:79552295-79552314 | None:intergenic | 20.0% |
| !! | ATGGTTAATATTAATAACAC+AGG | - | chr2_1:79552438-79552457 | None:intergenic | 20.0% |
| !!! | TTCATTTGAATCTATTTTGA+AGG | + | chr2_1:79552948-79552967 | Msa0228170:intron | 20.0% |
| !!! | TTCCAAATTTTTTACAATAC+CGG | + | chr2_1:79553623-79553642 | Msa0228170:intron | 20.0% |
| !!! | ATGAATTTCTTTCATTTTTC+CGG | - | chr2_1:79553645-79553664 | None:intergenic | 20.0% |
| !!! | TGAATTTTTTTTCCGTTATA+CGG | - | chr2_1:79553698-79553717 | None:intergenic | 20.0% |
| !! | TATTTATAAACCGAGAATAA+GGG | - | chr2_1:79553856-79553875 | None:intergenic | 20.0% |
| !! | TAAAAATTGTGAAAAACTTC+TGG | - | chr2_1:79554056-79554075 | None:intergenic | 20.0% |
| !! | CATAAAACAGGATAAATAAA+AGG | - | chr2_1:79554727-79554746 | None:intergenic | 20.0% |
| !!! | TGTTGTTATTAATTTTATGG+AGG | + | chr2_1:79554966-79554985 | Msa0228170:intron | 20.0% |
| !!! | ACCAATAATTCAATATTTTC+TGG | + | chr2_1:79555087-79555106 | Msa0228170:intron | 20.0% |
| !! | ACCAGAAAATATTGAATTAT+TGG | - | chr2_1:79555091-79555110 | None:intergenic | 20.0% |
| !! | GCAAGAAAATATTGAATTAT+TGG | - | chr2_1:79555147-79555166 | None:intergenic | 20.0% |
| !! | TTCAAGAGAATATCTATTAT+TGG | - | chr2_1:79555186-79555205 | None:intergenic | 20.0% |
| ! | GCACATATAGAAAATGATAA+CGG | - | chr2_1:79550339-79550358 | None:intergenic | 25.0% |
| ! | TTCTATATGTGCTTGTAATA+TGG | + | chr2_1:79550347-79550366 | Msa0228170:intron | 25.0% |
| ! | CAATGCAAAAATATCTTCAA+GGG | - | chr2_1:79550875-79550894 | None:intergenic | 25.0% |
| ! | GCATGTTATATCATATATAC+TGG | + | chr2_1:79550894-79550913 | Msa0228170:intron | 25.0% |
| !!! | ATTATTTTGACACATACATG+AGG | - | chr2_1:79551019-79551038 | None:intergenic | 25.0% |
| ! | TTAAGGTATGTATCTTATCA+TGG | - | chr2_1:79551161-79551180 | None:intergenic | 25.0% |
| !! | AACTATTACTGATTAGTTAG+AGG | - | chr2_1:79551210-79551229 | None:intergenic | 25.0% |
| ! | TGAAATAACCTGAAATGAAA+GGG | - | chr2_1:79551279-79551298 | None:intergenic | 25.0% |
| !!! | ATATTTTGGATTACTCAATG+TGG | + | chr2_1:79551412-79551431 | Msa0228170:CDS | 25.0% |
| !!! | TGTTTTGAATACTGCAAAAA+AGG | - | chr2_1:79551763-79551782 | None:intergenic | 25.0% |
| ! | TCAGTACTTCAATCATAATT+TGG | - | chr2_1:79552012-79552031 | None:intergenic | 25.0% |
| !!! | AATTTACAGAAGCACTTATA+AGG | - | chr2_1:79552706-79552725 | None:intergenic | 25.0% |
| !! | CTTTTTGTCTATAAACAGTT+AGG | + | chr2_1:79553038-79553057 | Msa0228170:intron | 25.0% |
| !!! | AAACAGATGTTTTAGAATGT+TGG | - | chr2_1:79553075-79553094 | None:intergenic | 25.0% |
| !!! | GTTCAGGTTAGTTTTATTTA+GGG | + | chr2_1:79553157-79553176 | Msa0228170:intron | 25.0% |
| !! | ACAAAAAAATTTTATGAGGG+TGG | - | chr2_1:79554627-79554646 | None:intergenic | 25.0% |
| ! | TTCCGGTATTGTAAAAAATT+TGG | - | chr2_1:79553628-79553647 | None:intergenic | 25.0% |
| ! | ATATGTGTATTTATAAACCG+AGG | - | chr2_1:79553828-79553847 | None:intergenic | 25.0% |
| !!! | CATATTTTTTCCCTTATTCT+CGG | + | chr2_1:79553843-79553862 | Msa0228170:intron | 25.0% |
| ! | GTATTTATAAACCGAGAATA+AGG | - | chr2_1:79553857-79553876 | None:intergenic | 25.0% |
| !! | ACAAAAAAATTTTATGAGGG+TGG | + | chr2_1:79554627-79554646 | Msa0228170:intron | 25.0% |
| !! | TTAATTTTATGGAGGAATGA+AGG | + | chr2_1:79554974-79554993 | Msa0228170:intron | 25.0% |
| !! | TTCAACTTTAGGAATAAGAT+TGG | - | chr2_1:79555500-79555519 | None:intergenic | 25.0% |
| !!! | AGTTTTTGGTATTCAACTTT+AGG | - | chr2_1:79555511-79555530 | None:intergenic | 25.0% |
| !! | AACCTTTTGCAGATAAAATT+AGG | + | chr2_1:79555533-79555552 | Msa0228170:intron | 25.0% |
| !! | TTCCTAATTTTATCTGCAAA+AGG | - | chr2_1:79555538-79555557 | None:intergenic | 25.0% |
| !! | TAGAAGAAAAGCTGAAATTT+TGG | + | chr2_1:79555696-79555715 | Msa0228170:three_prime_UTR | 25.0% |
| !! | AATGATAACGGAGGATAAAA+TGG | - | chr2_1:79550327-79550346 | None:intergenic | 30.0% |
| !! | CATATAGAAAATGATAACGG+AGG | - | chr2_1:79550336-79550355 | None:intergenic | 30.0% |
| ACGCAACAGTAGAAAATATT+TGG | - | chr2_1:79550461-79550480 | None:intergenic | 30.0% | |
| TGTTGCGTTAGCAAAAATAT+GGG | + | chr2_1:79550473-79550492 | Msa0228170:intron | 30.0% | |
| ! | AGTACAATAATGGAACATAG+TGG | - | chr2_1:79550725-79550744 | None:intergenic | 30.0% |
| GCAATGCAAAAATATCTTCA+AGG | - | chr2_1:79550876-79550895 | None:intergenic | 30.0% | |
| ! | TGGCTTATTTAGAGTTTCTA+TGG | + | chr2_1:79550914-79550933 | Msa0228170:intron | 30.0% |
| GGTTAAACCAAAAACAATGT+TGG | - | chr2_1:79551140-79551159 | None:intergenic | 30.0% | |
| ATGATATTCCCTTTCATTTC+AGG | + | chr2_1:79551268-79551287 | Msa0228170:intron | 30.0% | |
| CTGAAATAACCTGAAATGAA+AGG | - | chr2_1:79551280-79551299 | None:intergenic | 30.0% | |
| TGACTATACAGATGTTATCT+TGG | + | chr2_1:79551325-79551344 | Msa0228170:CDS | 30.0% | |
| TGACAAACTATTAAACCATC+TGG | - | chr2_1:79551371-79551390 | None:intergenic | 30.0% | |
| ! | ATAGTTTGTCATCTACCATA+TGG | + | chr2_1:79551380-79551399 | Msa0228170:CDS | 30.0% |
| AGTAATCCAAAATATGCAGT+AGG | - | chr2_1:79551407-79551426 | None:intergenic | 30.0% | |
| !!! | ATGTGGTAAGTGTTAGTTTT+AGG | + | chr2_1:79551429-79551448 | Msa0228170:intron | 30.0% |
| AATAATATGCGGATAAGCTT+CGG | - | chr2_1:79551554-79551573 | None:intergenic | 30.0% | |
| ! | CATACTAATTTTACTGGCAA+TGG | + | chr2_1:79551632-79551651 | Msa0228170:intron | 30.0% |
| !!! | AATGTTTTAGCCAAATGCTA+TGG | - | chr2_1:79551836-79551855 | None:intergenic | 30.0% |
| GAAATACTTCATTTGGAGAA+TGG | + | chr2_1:79551857-79551876 | Msa0228170:intron | 30.0% | |
| TTCAATCATAATTTGGACCA+GGG | - | chr2_1:79552005-79552024 | None:intergenic | 30.0% | |
| TAAGCTCAGTAGAATGATTA+AGG | + | chr2_1:79552243-79552262 | Msa0228170:intron | 30.0% | |
| AATTATATGCTGTGTACTCA+TGG | + | chr2_1:79552466-79552485 | Msa0228170:intron | 30.0% | |
| ATTATATGCTGTGTACTCAT+GGG | + | chr2_1:79552467-79552486 | Msa0228170:intron | 30.0% | |
| TATAATTGATATCCGACCTT+AGG | + | chr2_1:79552510-79552529 | Msa0228170:intron | 30.0% | |
| ! | ATCTTTTCCAAATTGACCTA+AGG | - | chr2_1:79552529-79552548 | None:intergenic | 30.0% |
| AGGTCAATTTGGAAAAGATT+AGG | + | chr2_1:79552530-79552549 | Msa0228170:intron | 30.0% | |
| TTTCAATGTGAACATATGCT+TGG | - | chr2_1:79552601-79552620 | None:intergenic | 30.0% | |
| AAGGTAGTTGGGAAATAAAA+AGG | - | chr2_1:79552687-79552706 | None:intergenic | 30.0% | |
| AATTGATATAGATGGCGATT+AGG | - | chr2_1:79552744-79552763 | None:intergenic | 30.0% | |
| ! | CAGAAAGGTAATTATTTTCG+CGG | - | chr2_1:79552843-79552862 | None:intergenic | 30.0% |
| ACTGTAAACAGTTATGTGAA+AGG | + | chr2_1:79552919-79552938 | Msa0228170:intron | 30.0% | |
| ! | AGTGTTACTATTGTTATGGA+TGG | - | chr2_1:79552983-79553002 | None:intergenic | 30.0% |
| ! | AAGCAGTGTTACTATTGTTA+TGG | - | chr2_1:79552987-79553006 | None:intergenic | 30.0% |
| TCTATAAACAGTTAGGTGAA+AGG | + | chr2_1:79553045-79553064 | Msa0228170:intron | 30.0% | |
| !! | CATTCTAAAACATCTGTTTC+CGG | + | chr2_1:79553076-79553095 | Msa0228170:CDS | 30.0% |
| !!! | CGTTCAGGTTAGTTTTATTT+AGG | + | chr2_1:79553156-79553175 | Msa0228170:intron | 30.0% |
| GTTAAATGACAAGTACTTTC+CGG | - | chr2_1:79553732-79553751 | None:intergenic | 30.0% | |
| ATACACAAAAAACCTAACCT+CGG | + | chr2_1:79553808-79553827 | Msa0228170:intron | 30.0% | |
| TGTATTTATAAACCGAGGTT+AGG | - | chr2_1:79553823-79553842 | None:intergenic | 30.0% | |
| TTAGTATATATGTCGAGCTT+AGG | - | chr2_1:79553926-79553945 | None:intergenic | 30.0% | |
| GAAAGTCAAATGCATAAAAC+AGG | - | chr2_1:79554739-79554758 | None:intergenic | 30.0% | |
| CTGTTAACTTTCTCTTGTTA+CGG | + | chr2_1:79554781-79554800 | Msa0228170:intron | 30.0% | |
| GCATCATATATATGAAAAGC+AGG | + | chr2_1:79554846-79554865 | Msa0228170:intron | 30.0% | |
| TCATATATATGAAAAGCAGG+CGG | + | chr2_1:79554849-79554868 | Msa0228170:intron | 30.0% | |
| TCCTAAATCTGTAGAATTGA+AGG | + | chr2_1:79554873-79554892 | Msa0228170:CDS | 30.0% | |
| TCCTTCAATTCTACAGATTT+AGG | - | chr2_1:79554877-79554896 | None:intergenic | 30.0% | |
| TCTGTAGAATTGAAGGAAAT+TGG | + | chr2_1:79554880-79554899 | Msa0228170:CDS | 30.0% | |
| TATAGCATATACGCAGTTTA+TGG | + | chr2_1:79555299-79555318 | Msa0228170:intron | 30.0% | |
| !!! | AAATTTTTTGAAATCGACGC+AGG | + | chr2_1:79555439-79555458 | Msa0228170:intron | 30.0% |
| !! | GAAAAGCTGAAATTTTGGAA+TGG | + | chr2_1:79555701-79555720 | Msa0228170:three_prime_UTR | 30.0% |
| CGATTCATTCTTTCAGCATT+GGG | - | chr2_1:79550281-79550300 | None:intergenic | 35.0% | |
| ACGATTCATTCTTTCAGCAT+TGG | - | chr2_1:79550282-79550301 | None:intergenic | 35.0% | |
| AATGCTGAAAGAATGAATCG+TGG | + | chr2_1:79550281-79550300 | Msa0228170:CDS | 35.0% | |
| AACGGAGGATAAAATGGTAA+AGG | - | chr2_1:79550321-79550340 | None:intergenic | 35.0% | |
| CTGTTGCGTTAGCAAAAATA+TGG | + | chr2_1:79550472-79550491 | Msa0228170:intron | 35.0% | |
| CATAACATCCTCTTTGAATC+AGG | + | chr2_1:79550521-79550540 | Msa0228170:intron | 35.0% | |
| ! | ATAATGGAACATAGTGGTCT+GGG | - | chr2_1:79550719-79550738 | None:intergenic | 35.0% |
| ! | AATAATGGAACATAGTGGTC+TGG | - | chr2_1:79550720-79550739 | None:intergenic | 35.0% |
| ! | GAGATATGGTTTTCTTGCTA+TGG | - | chr2_1:79550759-79550778 | None:intergenic | 35.0% |
| ATGACTCTGTTTATTCGATC+TGG | + | chr2_1:79551092-79551111 | Msa0228170:intron | 35.0% | |
| AACCAAAAACAATGTTGGAC+AGG | - | chr2_1:79551135-79551154 | None:intergenic | 35.0% | |
| CATCTGTATAGTCATGTGAT+CGG | - | chr2_1:79551319-79551338 | None:intergenic | 35.0% | |
| AAATATGCAGTAGGACCATA+TGG | - | chr2_1:79551398-79551417 | None:intergenic | 35.0% | |
| ! | TATGGTCCTACTGCATATTT+TGG | + | chr2_1:79551398-79551417 | Msa0228170:CDS | 35.0% |
| ATAATATGCGGATAAGCTTC+GGG | - | chr2_1:79551553-79551572 | None:intergenic | 35.0% | |
| TCAGAAGGTCGGATAAATAA+CGG | - | chr2_1:79551672-79551691 | None:intergenic | 35.0% | |
| TCGGAAAATTATCAGAAGGT+CGG | - | chr2_1:79551683-79551702 | None:intergenic | 35.0% | |
| TGAGTCGGAAAATTATCAGA+AGG | - | chr2_1:79551687-79551706 | None:intergenic | 35.0% | |
| !! | ATTTGGAGAATGGTTTTACG+AGG | + | chr2_1:79551867-79551886 | Msa0228170:intron | 35.0% |
| AAGAAACAGATCAATCATGC+AGG | - | chr2_1:79551902-79551921 | None:intergenic | 35.0% | |
| ! | ATTGATCTGTTTCTTGCAAG+CGG | + | chr2_1:79551907-79551926 | Msa0228170:intron | 35.0% |
| ACAAGTCTAGCAATCAATCA+TGG | + | chr2_1:79551963-79551982 | Msa0228170:intron | 35.0% | |
| CTTCAATCATAATTTGGACC+AGG | - | chr2_1:79552006-79552025 | None:intergenic | 35.0% | |
| CACTTAAATTATGCTCTTGC+AGG | - | chr2_1:79552047-79552066 | None:intergenic | 35.0% | |
| !!! | GTGTTGCACATAGTGTTTTT+TGG | + | chr2_1:79552064-79552083 | Msa0228170:intron | 35.0% |
| AAGAGAACAAATCAGAATGC+AGG | + | chr2_1:79552112-79552131 | Msa0228170:intron | 35.0% | |
| AGCATCTAATGAGGAAAAGA+TGG | + | chr2_1:79552138-79552157 | Msa0228170:intron | 35.0% | |
| TTATTATTAGGGGCTTCTAG+GGG | - | chr2_1:79552205-79552224 | None:intergenic | 35.0% | |
| CTTATTATTAGGGGCTTCTA+GGG | - | chr2_1:79552206-79552225 | None:intergenic | 35.0% | |
| TCTTATTATTAGGGGCTTCT+AGG | - | chr2_1:79552207-79552226 | None:intergenic | 35.0% | |
| TCGAGACGTGATTTATATTG+AGG | - | chr2_1:79552308-79552327 | None:intergenic | 35.0% | |
| TTATATGCTGTGTACTCATG+GGG | + | chr2_1:79552468-79552487 | Msa0228170:intron | 35.0% | |
| TTTCCAAATTGACCTAAGGT+CGG | - | chr2_1:79552525-79552544 | None:intergenic | 35.0% | |
| ! | GAAGCACTTATAAGGTAGTT+GGG | - | chr2_1:79552698-79552717 | None:intergenic | 35.0% |
| !! | AGAAGCACTTATAAGGTAGT+TGG | - | chr2_1:79552699-79552718 | None:intergenic | 35.0% |
| !! | ATACTGCTTTTGTGCCAATT+TGG | + | chr2_1:79552767-79552786 | Msa0228170:intron | 35.0% |
| AAGCTGTTTACAGTCCAAAT+TGG | - | chr2_1:79552784-79552803 | None:intergenic | 35.0% | |
| AATTTGGACTGTAAACAGCT+TGG | + | chr2_1:79552783-79552802 | Msa0228170:intron | 35.0% | |
| ! | GTGTCACTAGTATTACAGAA+AGG | - | chr2_1:79552858-79552877 | None:intergenic | 35.0% |
| !! | ATACGTTTTGTGTCTGGTTT+TGG | - | chr2_1:79553104-79553123 | None:intergenic | 35.0% |
| ATAGATTCTACTGAGTCACA+GGG | - | chr2_1:79553268-79553287 | None:intergenic | 35.0% | |
| AAAAAATCAGAAATGCCACG+TGG | - | chr2_1:79553360-79553379 | None:intergenic | 35.0% | |
| CTTGTCATTCAACCGTATAA+CGG | + | chr2_1:79553683-79553702 | Msa0228170:intron | 35.0% | |
| ! | CTTGTCATTTAACCTAAGCT+CGG | + | chr2_1:79553739-79553758 | Msa0228170:intron | 35.0% |
| ! | TTTTTGTGTATTCCGAGCTT+AGG | - | chr2_1:79553754-79553773 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGGGGTACACG+TGG | - | chr2_1:79554496-79554515 | None:intergenic | 35.0% |
| !!! | CTGTAATATAGGCCACTTTT+GGG | - | chr2_1:79554684-79554703 | None:intergenic | 35.0% |
| CAAAAGTGGCCTATATTACA+GGG | + | chr2_1:79554683-79554702 | Msa0228170:intron | 35.0% | |
| AAAAGTGGCCTATATTACAG+GGG | + | chr2_1:79554684-79554703 | Msa0228170:intron | 35.0% | |
| !!! | GTTTTTAGCCCCTGTAATAT+AGG | - | chr2_1:79554695-79554714 | None:intergenic | 35.0% |
| ATATTGTATCTGCTGCATAC+AGG | + | chr2_1:79554824-79554843 | Msa0228170:intron | 35.0% | |
| CATATATATGAAAAGCAGGC+GGG | + | chr2_1:79554850-79554869 | Msa0228170:intron | 35.0% | |
| !!! | TTTTGAGTTGCGTCTATATC+AGG | + | chr2_1:79554909-79554928 | Msa0228170:CDS | 35.0% |
| TGAATATATTGTGCTGCAAC+TGG | + | chr2_1:79555040-79555059 | Msa0228170:intron | 35.0% | |
| GAATATATTGTGCTGCAACT+GGG | + | chr2_1:79555041-79555060 | Msa0228170:intron | 35.0% | |
| TATTTCTTGCGTCTCTAACT+TGG | + | chr2_1:79555212-79555231 | Msa0228170:intron | 35.0% | |
| ! | CTGCAAAAGGTTTCAGTTTT+TGG | - | chr2_1:79555525-79555544 | None:intergenic | 35.0% |
| GCAGATAAAATTAGGAACAG+TGG | + | chr2_1:79555541-79555560 | Msa0228170:intron | 35.0% | |
| ACGACACAAACAAGAGAAAA+TGG | + | chr2_1:79555746-79555765 | Msa0228170:three_prime_UTR | 35.0% | |
| CTTCTTTGACAAGTAGCAAG+AGG | - | chr2_1:79550632-79550651 | None:intergenic | 40.0% | |
| TTGACACATACATGAGGAAC+AGG | - | chr2_1:79551013-79551032 | None:intergenic | 40.0% | |
| ! | TGCCTGTCCAACATTGTTTT+TGG | + | chr2_1:79551130-79551149 | Msa0228170:intron | 40.0% |
| ATTAGAGACAGAAAAGCCGT+TGG | + | chr2_1:79551520-79551539 | Msa0228170:CDS | 40.0% | |
| !! | TCGGATAAATAACGGGTGAA+AGG | - | chr2_1:79551664-79551683 | None:intergenic | 40.0% |
| CAGAAGGTCGGATAAATAAC+GGG | - | chr2_1:79551671-79551690 | None:intergenic | 40.0% | |
| ! | TTTCCGACTCAGAGTATCAT+TGG | + | chr2_1:79551696-79551715 | Msa0228170:intron | 40.0% |
| GAACCAATGATACTCTGAGT+CGG | - | chr2_1:79551702-79551721 | None:intergenic | 40.0% | |
| ! | TCAATCATGGTTCTGTTGAC+AGG | + | chr2_1:79551976-79551995 | Msa0228170:intron | 40.0% |
| TAAATCACGTCTCGAAGACT+TGG | + | chr2_1:79552313-79552332 | Msa0228170:intron | 40.0% | |
| !! | AAAGCATTTTTCCACGAGGT+CGG | - | chr2_1:79552375-79552394 | None:intergenic | 40.0% |
| !! | CAACAAAGCATTTTTCCACG+AGG | - | chr2_1:79552379-79552398 | None:intergenic | 40.0% |
| TTGTGTTCATCCACTTGTAC+TGG | + | chr2_1:79552412-79552431 | Msa0228170:intron | 40.0% | |
| TATCCGACCTTAGGTCAATT+TGG | + | chr2_1:79552519-79552538 | Msa0228170:intron | 40.0% | |
| AAGATTAGGTGCTCTATCAC+TGG | + | chr2_1:79552544-79552563 | Msa0228170:intron | 40.0% | |
| CTCTATCACTGGAATACTTG+TGG | + | chr2_1:79552555-79552574 | Msa0228170:intron | 40.0% | |
| CAATGTGAACATATGCTTGG+TGG | - | chr2_1:79552598-79552617 | None:intergenic | 40.0% | |
| ! | ACTGTAAACAGCTTGGTGAA+AGG | + | chr2_1:79552790-79552809 | Msa0228170:intron | 40.0% |
| ! | CTGTAAACAGCTTGGTGAAA+GGG | + | chr2_1:79552791-79552810 | Msa0228170:intron | 40.0% |
| !! | AGTAACACTGCTTTTGTGTC+AGG | + | chr2_1:79552994-79553013 | Msa0228170:intron | 40.0% |
| ! | GTGACAATACGTTTTGTGTC+TGG | - | chr2_1:79553110-79553129 | None:intergenic | 40.0% |
| CGAGATATAGTCAGACTTGT+TGG | - | chr2_1:79553138-79553157 | None:intergenic | 40.0% | |
| AGTCTGACTATATCTCGTTC+AGG | + | chr2_1:79553141-79553160 | Msa0228170:intron | 40.0% | |
| TAGATTCTACTGAGTCACAG+GGG | - | chr2_1:79553267-79553286 | None:intergenic | 40.0% | |
| CATAGATTCTACTGAGTCAC+AGG | - | chr2_1:79553269-79553288 | None:intergenic | 40.0% | |
| GTGACTCAGTAGAATCTATG+AGG | + | chr2_1:79553269-79553288 | Msa0228170:intron | 40.0% | |
| ACTCAGTAGAATCTATGAGG+TGG | + | chr2_1:79553272-79553291 | Msa0228170:intron | 40.0% | |
| TGGACATTCATTTACACACG+TGG | - | chr2_1:79553340-79553359 | None:intergenic | 40.0% | |
| TGTGTAAATGAATGTCCACG+TGG | + | chr2_1:79553342-79553361 | Msa0228170:intron | 40.0% | |
| !! | TCAAAGATTCTGCTGACTCA+AGG | + | chr2_1:79554583-79554602 | Msa0228170:intron | 40.0% |
| !! | CAAAGATTCTGCTGACTCAA+GGG | + | chr2_1:79554584-79554603 | Msa0228170:intron | 40.0% |
| !! | AAAGATTCTGCTGACTCAAG+GGG | + | chr2_1:79554585-79554604 | Msa0228170:intron | 40.0% |
| !! | CCTGTAATATAGGCCACTTT+TGG | - | chr2_1:79554685-79554704 | None:intergenic | 40.0% |
| CCAAAAGTGGCCTATATTAC+AGG | + | chr2_1:79554682-79554701 | Msa0228170:intron | 40.0% | |
| TATAGACGCAACTCAAAACG+TGG | - | chr2_1:79554907-79554926 | None:intergenic | 40.0% | |
| TTTCCGATCTGTTCTTGAGT+TGG | + | chr2_1:79555110-79555129 | Msa0228170:intron | 40.0% | |
| AGACCAACTCAAGAACAGAT+CGG | - | chr2_1:79555116-79555135 | None:intergenic | 40.0% | |
| GACCTTACATGAACACTACA+CGG | + | chr2_1:79555597-79555616 | Msa0228170:CDS | 40.0% | |
| TTCCGTGTAGTGTTCATGTA+AGG | - | chr2_1:79555602-79555621 | None:intergenic | 40.0% | |
| GAGGAACTTTCTGTGATTGA+TGG | + | chr2_1:79555622-79555641 | Msa0228170:exon | 40.0% | |
| GAACTTTCTGTGATTGATGG+AGG | + | chr2_1:79555625-79555644 | Msa0228170:exon | 40.0% | |
| TTGAGACACTAAACTCAGCA+AGG | + | chr2_1:79555850-79555869 | Msa0228170:three_prime_UTR | 40.0% | |
| TGAGACACTAAACTCAGCAA+GGG | + | chr2_1:79555851-79555870 | Msa0228170:three_prime_UTR | 40.0% | |
| GCTGAAAGAATGAATCGTGG+TGG | + | chr2_1:79550284-79550303 | Msa0228170:CDS | 45.0% | |
| AAGAATGAATCGTGGTGGTC+AGG | + | chr2_1:79550289-79550308 | Msa0228170:CDS | 45.0% | |
| GACAAGTAGCAAGAGGAGTA+AGG | - | chr2_1:79550625-79550644 | None:intergenic | 45.0% | |
| ATCTTGGTTCATGAACACCG+AGG | + | chr2_1:79551341-79551360 | Msa0228170:CDS | 45.0% | |
| TTAAACCATCTGGCACACCT+CGG | - | chr2_1:79551361-79551380 | None:intergenic | 45.0% | |
| GCTAATATGCTGTTCCTTGC+AGG | + | chr2_1:79551483-79551502 | Msa0228170:intron | 45.0% | |
| TTCATGCCTTGTAACCTGCA+AGG | - | chr2_1:79551500-79551519 | None:intergenic | 45.0% | |
| ACCGTGATGTCCATAGCATT+TGG | + | chr2_1:79551823-79551842 | Msa0228170:intron | 45.0% | |
| GCCAAATGCTATGGACATCA+CGG | - | chr2_1:79551827-79551846 | None:intergenic | 45.0% | |
| AGATCAATCATGCAGGAGAC+TGG | - | chr2_1:79551895-79551914 | None:intergenic | 45.0% | |
| TTATGCTCTTGCAGGCGATT+AGG | - | chr2_1:79552039-79552058 | None:intergenic | 45.0% | |
| TGCAGGAGTAGCATCTAATG+AGG | + | chr2_1:79552129-79552148 | Msa0228170:intron | 45.0% | |
| ACGTGTACAGTAGTTTAGCC+AGG | + | chr2_1:79552168-79552187 | Msa0228170:intron | 45.0% | |
| GATTCATATAACCGACCTCG+TGG | + | chr2_1:79552361-79552380 | Msa0228170:intron | 45.0% | |
| ATAACACAGGCCAGTACAAG+TGG | - | chr2_1:79552425-79552444 | None:intergenic | 45.0% | |
| !!! | TTTGTGTCTGGTTTTGGCAC+CGG | - | chr2_1:79553098-79553117 | None:intergenic | 45.0% |
| GCGTGACACGTCATCAAAAA+AGG | + | chr2_1:79554543-79554562 | Msa0228170:intron | 45.0% | |
| AGTCAGCAGAATCTTTGACG+TGG | - | chr2_1:79554581-79554600 | None:intergenic | 45.0% | |
| ACATGAACACTACACGGAAG+AGG | + | chr2_1:79555603-79555622 | Msa0228170:CDS | 45.0% | |
| ! | TGTTACTGTGCTGTTAGTGC+AGG | + | chr2_1:79555663-79555682 | Msa0228170:three_prime_UTR | 45.0% |
| !! | TTAATGAATTATTATATTTA+AGG | - | chr2_1:79551178-79551197 | None:intergenic | 5.0% |
| !!! | TGAAATTTTTTTAAAAAATA+CGG | - | chr2_1:79554301-79554320 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr2_1:79554346-79554365 | None:intergenic | 5.0% |
| !! | TAAAAAAAATTAAAAAATTC+TGG | - | chr2_1:79554455-79554474 | None:intergenic | 5.0% |
| !!! | TATTTTATATTTTTTTTTTG+GGG | - | chr2_1:79554505-79554524 | None:intergenic | 5.0% |
| ATGAATCGTGGTGGTCAGGT+TGG | + | chr2_1:79550293-79550312 | Msa0228170:intron | 50.0% | |
| TTCACGGGCCTGATTCAAAG+AGG | - | chr2_1:79550532-79550551 | None:intergenic | 50.0% | |
| GCTGTTCCTTGCAGGTTACA+AGG | + | chr2_1:79551491-79551510 | Msa0228170:intron | 50.0% | |
| GTTCTGTTGACAGGTTACCC+TGG | + | chr2_1:79551985-79552004 | Msa0228170:intron | 50.0% | |
| ! | TTATTAGGGGCTTCTAGGGG+TGG | - | chr2_1:79552202-79552221 | None:intergenic | 50.0% |
| ACAGGGGCTAAACCCAAAAG+TGG | + | chr2_1:79554669-79554688 | Msa0228170:intron | 50.0% | |
| AGCTTCGGGCATGGTTCCAA+CGG | - | chr2_1:79551539-79551558 | None:intergenic | 55.0% | |
| ATGCGGATAAGCTTCGGGCA+TGG | - | chr2_1:79551548-79551567 | None:intergenic | 55.0% | |
| GCTCTTGCAGGCGATTAGGT+GGG | - | chr2_1:79552035-79552054 | None:intergenic | 55.0% | |
| TGCTCTTGCAGGCGATTAGG+TGG | - | chr2_1:79552036-79552055 | None:intergenic | 55.0% | |
| TACTGAGTCACAGGGGTCAG+GGG | - | chr2_1:79553260-79553279 | None:intergenic | 55.0% | |
| CTACTGAGTCACAGGGGTCA+GGG | - | chr2_1:79553261-79553280 | None:intergenic | 55.0% | |
| TCTACTGAGTCACAGGGGTC+AGG | - | chr2_1:79553262-79553281 | None:intergenic | 55.0% | |
| !! | TCTGCTGACTCAAGGGGTTC+AGG | + | chr2_1:79554591-79554610 | Msa0228170:intron | 55.0% |
| !! | CTGCTGACTCAAGGGGTTCA+GGG | + | chr2_1:79554592-79554611 | Msa0228170:intron | 55.0% |
| !! | TGCTGACTCAAGGGGTTCAG+GGG | + | chr2_1:79554593-79554612 | Msa0228170:intron | 55.0% |
| GAACACCGAGGTGTGCCAGA+TGG | + | chr2_1:79551353-79551372 | Msa0228170:CDS | 60.0% | |
| CTAGGGGTGGTCTTCTCACC+TGG | - | chr2_1:79552189-79552208 | None:intergenic | 60.0% | |
| !! | TCTATGAGGTGGCGCTGACG+TGG | + | chr2_1:79553283-79553302 | Msa0228170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 79550260 | 79556012 | 79550260 | ID=Msa0228170;Name=Msa0228170 |
| chr2_1 | mRNA | 79550260 | 79556012 | 79550260 | ID=Msa0228170-mRNA-1;Parent=Msa0228170;Name=Msa0228170-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.42|0.85|0.66|0.57|7|349|169 |
| chr2_1 | exon | 79550260 | 79550310 | 79550260 | ID=Msa0228170-mRNA-1:exon:24198;Parent=Msa0228170-mRNA-1 |
| chr2_1 | exon | 79551290 | 79551433 | 79551290 | ID=Msa0228170-mRNA-1:exon:24199;Parent=Msa0228170-mRNA-1 |
| chr2_1 | exon | 79551505 | 79551594 | 79551505 | ID=Msa0228170-mRNA-1:exon:24200;Parent=Msa0228170-mRNA-1 |
| chr2_1 | exon | 79553056 | 79553124 | 79553056 | ID=Msa0228170-mRNA-1:exon:24201;Parent=Msa0228170-mRNA-1 |
| chr2_1 | exon | 79554868 | 79554930 | 79554868 | ID=Msa0228170-mRNA-1:exon:24202;Parent=Msa0228170-mRNA-1 |
| chr2_1 | exon | 79555545 | 79555964 | 79555545 | ID=Msa0228170-mRNA-1:exon:24203;Parent=Msa0228170-mRNA-1 |
| chr2_1 | exon | 79555991 | 79556012 | 79555991 | ID=Msa0228170-mRNA-1:exon:24204;Parent=Msa0228170-mRNA-1 |
| chr2_1 | CDS | 79550260 | 79550310 | 79550260 | ID=Msa0228170-mRNA-1:cds;Parent=Msa0228170-mRNA-1 |
| chr2_1 | CDS | 79551290 | 79551433 | 79551290 | ID=Msa0228170-mRNA-1:cds;Parent=Msa0228170-mRNA-1 |
| chr2_1 | CDS | 79551505 | 79551594 | 79551505 | ID=Msa0228170-mRNA-1:cds;Parent=Msa0228170-mRNA-1 |
| chr2_1 | CDS | 79553056 | 79553124 | 79553056 | ID=Msa0228170-mRNA-1:cds;Parent=Msa0228170-mRNA-1 |
| chr2_1 | CDS | 79554868 | 79554930 | 79554868 | ID=Msa0228170-mRNA-1:cds;Parent=Msa0228170-mRNA-1 |
| chr2_1 | CDS | 79555545 | 79555637 | 79555545 | ID=Msa0228170-mRNA-1:cds;Parent=Msa0228170-mRNA-1 |
| chr2_1 | three_prime_UTR | 79555638 | 79555964 | 79555638 | ID=Msa0228170-mRNA-1:three_prime_utr;Parent=Msa0228170-mRNA-1 |
| chr2_1 | three_prime_UTR | 79555991 | 79556012 | 79555991 | ID=Msa0228170-mRNA-1:three_prime_utr;Parent=Msa0228170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
