AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552660 MtrunA17_Chr4g0038181 55.482 456 130 9 31 415 4 457 1.37e-165 481
Msa0552660 MtrunA17_Chr4g0038201 63.091 317 48 3 10 316 1 258 1.33e-131 389
Msa0552660 MtrunA17_Chr4g0037981 75.916 191 25 2 464 633 61 251 1.76e-88 275
Msa0552660 MtrunA17_Chr2g0329221 42.857 329 172 6 31 357 69 383 2.64e-85 278
Msa0552660 MtrunA17_Chr2g0329221 46.269 134 70 2 302 434 423 555 1.40e-26 114
Msa0552660 MtrunA17_Chr4g0033361 42.553 329 173 7 31 357 59 373 1.54e-84 276
Msa0552660 MtrunA17_Chr3g0110331 47.670 279 133 6 31 307 54 321 1.35e-83 274
Msa0552660 MtrunA17_Chr3g0110331 52.336 107 50 1 302 407 405 511 5.62e-25 109
Msa0552660 MtrunA17_Chr3g0110341 46.939 294 138 7 19 310 71 348 1.55e-82 271
Msa0552660 MtrunA17_Chr3g0110341 50.000 104 51 1 302 404 424 527 2.72e-24 107
Msa0552660 MtrunA17_Chr4g0038191 92.982 114 8 0 319 432 2 115 1.94e-70 223
Msa0552660 MtrunA17_Chr4g0034371 29.893 281 175 9 34 307 48 313 6.84e-37 145
Msa0552660 MtrunA17_Chr5g0447801 52.885 104 48 1 302 404 162 265 1.14e-26 110
Msa0552660 MtrunA17_Chr5g0447801 66.667 72 21 2 237 307 3 72 4.05e-23 100
Msa0552660 MtrunA17_Chr3g0103961 28.218 202 128 8 113 309 55 244 3.64e-19 87.8
Msa0552660 MtrunA17_Chr3g0104451 27.358 212 132 9 113 312 26 227 4.14e-15 75.5
Msa0552660 MtrunA17_Chr3g0103941 26.866 201 129 9 113 307 46 234 2.29e-14 73.6
Msa0552660 MtrunA17_Chr5g0434721 26.633 199 97 6 112 307 156 308 7.00e-14 73.2
Msa0552660 MtrunA17_Chr3g0103911 25.258 194 128 8 113 300 46 228 2.17e-13 70.1
Msa0552660 MtrunA17_Chr2g0291681 28.085 235 143 9 87 307 186 408 2.36e-13 72.8
Msa0552660 MtrunA17_Chr3g0103871 25.888 197 128 7 111 300 60 245 2.89e-13 70.1
Msa0552660 MtrunA17_Chr3g0103891 25.258 194 128 8 113 300 46 228 3.19e-13 70.1
Msa0552660 MtrunA17_Chr3g0082091 26.866 201 134 6 113 311 1243 1432 3.96e-12 69.7
Msa0552660 MtrunA17_Chr1g0164621 26.866 201 134 6 113 311 1245 1434 7.98e-12 68.9
Msa0552660 MtrunA17_Chr5g0425671 25.000 196 127 8 113 300 105 288 1.38e-11 66.2
Msa0552660 MtrunA17_Chr3g0104441 24.891 229 149 7 101 312 10 232 1.63e-11 65.5
Msa0552660 MtrunA17_Chr2g0301821 25.837 209 129 9 105 305 79 269 3.72e-11 64.3
Msa0552660 MtrunA17_Chr2g0301761 23.762 202 135 6 105 300 72 260 6.16e-11 63.5
Msa0552660 MtrunA17_Chr2g0301841 23.944 213 136 8 105 308 88 283 7.13e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552660 AT1G65430.1 45.289 329 164 7 31 357 50 364 3.58e-85 278
Msa0552660 AT1G65430.1 49.533 107 53 1 302 407 404 510 4.76e-24 107
Msa0552660 AT1G05890.1 41.667 348 185 8 14 357 35 368 6.01e-83 271
Msa0552660 AT1G05890.1 46.154 104 53 2 302 404 408 509 5.80e-21 97.4
Msa0552660 AT1G05890.2 42.598 331 174 7 29 357 94 410 2.44e-82 271
Msa0552660 AT1G05890.2 46.154 104 53 2 302 404 450 551 8.33e-21 97.1
Msa0552660 AT2G31510.2 41.379 348 186 8 14 357 40 373 9.83e-82 266
Msa0552660 AT2G31510.2 48.276 87 44 1 302 387 413 499 3.83e-19 91.7
Msa0552660 AT2G31510.1 41.379 348 186 8 14 357 40 373 1.42e-81 268
Msa0552660 AT2G31510.1 50.962 104 50 1 302 404 413 516 5.97e-26 112
Msa0552660 AT2G31770.1 33.962 477 214 15 20 404 27 494 5.20e-79 261
Msa0552660 AT2G31780.1 41.667 300 157 7 20 313 45 332 5.59e-79 258
Msa0552660 AT2G31510.3 42.038 314 166 7 46 357 2 301 1.37e-76 253
Msa0552660 AT2G31510.3 50.467 107 52 1 302 407 341 447 5.06e-26 112
Msa0552660 AT2G31760.1 37.971 345 178 9 32 355 43 372 6.72e-76 251
Msa0552660 AT3G19800.1 43.434 198 88 7 454 630 34 228 4.30e-40 146
Msa0552660 AT3G19800.2 45.699 186 77 7 466 630 43 225 8.15e-40 145
Msa0552660 AT1G05880.2 33.681 288 152 9 30 307 37 295 1.69e-39 152
Msa0552660 AT1G05880.2 35.514 107 68 1 302 407 377 483 5.86e-15 78.6
Msa0552660 AT1G05880.3 33.681 288 152 9 30 307 37 295 2.60e-39 151
Msa0552660 AT1G05880.3 33.673 98 64 1 302 398 377 474 1.83e-11 67.4
Msa0552660 AT4G34370.1 32.270 282 168 9 34 307 43 309 8.83e-39 151
Msa0552660 AT2G16090.3 31.788 302 181 10 16 307 24 310 3.12e-37 146
Msa0552660 AT2G16090.4 31.788 302 181 10 16 307 24 310 3.69e-37 147
Msa0552660 AT2G16090.1 31.788 302 181 10 16 307 24 310 4.03e-37 146
Msa0552660 AT1G05880.1 31.597 288 151 8 30 307 37 288 6.08e-37 144
Msa0552660 AT1G05880.1 34.746 118 75 2 302 417 370 487 5.37e-15 78.6
Msa0552660 AT3G27710.1 29.693 293 191 9 17 307 28 307 9.40e-36 142
Msa0552660 AT2G16090.2 33.585 265 152 9 52 307 1 250 1.83e-33 135
Msa0552660 AT2G16090.5 33.585 265 152 9 52 307 1 250 2.00e-33 134
Msa0552660 AT5G63750.1 30.097 309 179 10 32 311 9 309 2.89e-32 131
Msa0552660 AT5G08730.1 29.795 292 175 11 28 311 4 273 1.53e-28 120
Msa0552660 AT5G63730.1 28.276 290 189 8 32 311 9 289 2.08e-26 114
Msa0552660 AT5G63760.1 32.663 199 120 6 123 311 47 241 8.54e-25 108
Msa0552660 AT5G63760.3 32.663 199 120 6 123 311 47 241 8.54e-25 108
Msa0552660 AT5G63760.2 32.663 199 120 6 123 311 47 241 8.54e-25 108
Msa0552660 AT4G34370.2 39.073 151 74 7 162 307 5 142 1.41e-21 98.2
Msa0552660 AT3G27720.1 40.441 136 70 5 173 307 142 267 1.50e-21 99.0
Msa0552660 AT3G53690.1 28.311 219 135 8 98 308 99 303 6.60e-16 79.7
Msa0552660 AT5G63760.4 34.307 137 79 4 183 311 2 135 1.18e-15 79.3
Msa0552660 AT1G32340.1 26.147 218 131 4 108 307 373 578 1.22e-15 81.3
Msa0552660 AT5G10370.1 27.586 232 145 10 85 310 1537 1751 1.46e-15 81.3
Msa0552660 AT4G01020.1 26.201 229 152 8 85 310 1534 1748 6.99e-14 75.9

Find 106 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCGAGACCTACATTTAC+AGG 0.224233 4_1:-49322824 Msa0552660:CDS
TTGGAAACCCTAATTCAAAA+TGG 0.237895 4_1:+49326313 None:intergenic
TGAAATACCTGTCGGCAATA+TGG 0.256325 4_1:+49322331 None:intergenic
CTCAAATGGGCTTATGTATA+TGG 0.266622 4_1:-49325378 Msa0552660:CDS
ATGGAACACCACTCATGTTT+TGG 0.266775 4_1:-49326394 Msa0552660:CDS
CTTATAGCATAACAACAATT+TGG 0.269139 4_1:+49325988 None:intergenic
AAGACGCCGCTACCTGAAAT+TGG 0.280726 4_1:-49321832 Msa0552660:CDS
ATTTGTAGTTGGTGAGTAAA+AGG 0.283329 4_1:+49326415 None:intergenic
TTCCAACAGTTGATGCAAAA+TGG 0.305577 4_1:+49326207 None:intergenic
TAAGGGTCATCTCCAATTTC+AGG 0.323199 4_1:+49321820 None:intergenic
TGGTACGTGAGTACCGAATT+CGG 0.325954 4_1:-49323833 Msa0552660:CDS
GTAACATCATAATTTAATCT+AGG 0.330680 4_1:+49325937 None:intergenic
GAAATACCTGTCGGCAATAT+GGG 0.350769 4_1:+49322332 None:intergenic
GGCTAGACTCTGATAATAAT+TGG 0.352382 4_1:+49325959 None:intergenic
GTGAGAGTTTGTGATGAGTT+TGG 0.356423 4_1:+49326294 None:intergenic
ATGTGGAAAACAACAGTGAT+AGG 0.360514 4_1:-49326032 Msa0552660:CDS
ATCAAGATCAACTTCGTATC+CGG 0.376867 4_1:+49321225 None:intergenic
AAAAGGGCGTTAAGTGAAAT+TGG 0.377437 4_1:-49325090 Msa0552660:CDS
GCATGCAAGTGGTCTTGATA+TGG 0.379308 4_1:+49326437 None:intergenic
TGGAAACCCTAATTCAAAAT+GGG 0.381580 4_1:+49326314 None:intergenic
TAATGATATAGATTTCAAAA+AGG 0.385501 4_1:+49320718 None:intergenic
CAAAAGGTGGTCGAGACTAT+TGG 0.396305 4_1:-49320862 Msa0552660:CDS
CTTTGGTACTCTTGATTCGC+TGG 0.399323 4_1:+49323783 None:intergenic
AATGTAGAAGAGTTCTCAAA+TGG 0.404222 4_1:-49325392 Msa0552660:CDS
CTGAGGTTACAAATAATAGT+TGG 0.406910 4_1:-49325810 Msa0552660:CDS
GTCAGGCTTCTTTCGACAAA+AGG 0.416003 4_1:-49320878 Msa0552660:CDS
AGATACAAGTGGACAAAGTC+AGG 0.421106 4_1:-49320895 Msa0552660:CDS
TACGCCGAAGTACCCGAATT+CGG 0.436567 4_1:+49323820 None:intergenic
ACGTCATGTGTCTGCACCCT+TGG 0.442086 4_1:+49325734 None:intergenic
CATTTACTGCAGAGTTTAGC+CGG 0.442228 4_1:+49321182 None:intergenic
ATTCGGGTACTTCGGCGTAT+TGG 0.454389 4_1:-49323816 Msa0552660:CDS
AAACTTCACTGGGGTGAAAA+GGG 0.455355 4_1:-49325106 Msa0552660:CDS
TTGGTTAGTGGATTAGAGAA+TGG 0.456737 4_1:-49325150 Msa0552660:CDS
ATCAAGGGAGAATTGCGAAT+TGG 0.457762 4_1:-49323853 Msa0552660:intron
GGTACGTGAGTACCGAATTC+GGG 0.457839 4_1:-49323832 Msa0552660:CDS
ATCAACTTCGTATCCGGGTC+TGG 0.462073 4_1:+49321231 None:intergenic
TTAAGAAAGGTTCTGAAAGA+TGG 0.465584 4_1:-49325249 Msa0552660:CDS
AAAACTTCACTGGGGTGAAA+AGG 0.466144 4_1:-49325107 Msa0552660:CDS
CCTTCTCTAGAGATGAGATT+AGG 0.466440 4_1:-49326248 Msa0552660:CDS
TATCATTACCAACGAATACT+TGG 0.467784 4_1:-49320703 Msa0552660:three_prime_UTR
AAAGGATGCACTGAAACAAT+TGG 0.471509 4_1:-49325418 Msa0552660:intron
TGCAGAAAGTGAATTAAGAA+AGG 0.477434 4_1:-49325262 Msa0552660:CDS
ACGGAAAATATCACGGGGAA+TGG 0.484568 4_1:-49322867 Msa0552660:CDS
GTAATCATCTTCTTCGATGA+TGG 0.486394 4_1:+49326594 None:intergenic
GGGTTGGTTGGACAAGCCTA+TGG 0.488531 4_1:+49326335 None:intergenic
ACCCTAATTCAAAATGGGGT+TGG 0.493488 4_1:+49326319 None:intergenic
TAATGTATAGAATAATCGTC+AGG 0.498300 4_1:-49320792 Msa0552660:three_prime_UTR
CAATCAAATCCTGTAAATGT+AGG 0.499167 4_1:+49322815 None:intergenic
CATCAATCTCTGCGTCCAAA+AGG 0.501589 4_1:-49322755 Msa0552660:intron
TAATTCAAAATGGGGTTGGT+TGG 0.504809 4_1:+49326323 None:intergenic
AGTGGTGTTCCATTTGTAGT+TGG 0.505495 4_1:+49326404 None:intergenic
AATCAGCGGTAACCATGCTT+TGG 0.512668 4_1:+49323766 None:intergenic
TAACATCATAATTTAATCTA+GGG 0.513895 4_1:+49325938 None:intergenic
GTGATTGTTATCTTCTGCAA+TGG 0.521138 4_1:+49326533 None:intergenic
TTTGTTGCAGGATACGTGCT+CGG 0.521238 4_1:-49321079 Msa0552660:intron
TCATATAAGAAGCTGAATAC+CGG 0.522583 4_1:-49325060 Msa0552660:CDS
TCAAGATCAACTTCGTATCC+GGG 0.528329 4_1:+49321226 None:intergenic
CTTCGATGATGGTAAGCTCA+TGG 0.528457 4_1:+49326605 None:intergenic
AAAGATTAGTTCTGATTCTG+AGG 0.528596 4_1:-49325827 Msa0552660:CDS
TACTGCAGAGTTTAGCCGGA+TGG 0.530577 4_1:+49321186 None:intergenic
CTGCATTACAAGAAGGTTGA+GGG 0.530874 4_1:+49326133 None:intergenic
TTCTTCCCCATATTGCCGAC+AGG 0.531443 4_1:-49322338 Msa0552660:intron
CTATTGTAAAAGATGCCATC+CGG 0.538715 4_1:-49321201 Msa0552660:CDS
CGGCCGACGGAAAATATCAC+GGG 0.539700 4_1:-49322873 Msa0552660:CDS
GCATATAGAAAGCATAGCTC+AGG 0.539865 4_1:-49325310 Msa0552660:CDS
GCTGCATTACAAGAAGGTTG+AGG 0.551191 4_1:+49326132 None:intergenic
TAGCTCAGGTTGCTTTGAAG+AGG 0.552027 4_1:-49325296 Msa0552660:CDS
TCAACAGCTGCATTACAAGA+AGG 0.553628 4_1:+49326126 None:intergenic
TGAAACTAATCAATCTGACT+AGG 0.557079 4_1:-49325197 Msa0552660:CDS
ACAAAAGTTTCACAATCCAC+AGG 0.558495 4_1:+49325862 None:intergenic
GGAAACCCTAATTCAAAATG+GGG 0.561455 4_1:+49326315 None:intergenic
ATTGTTATCTTCTGCAATGG+AGG 0.567433 4_1:+49326536 None:intergenic
TGTGGAAAACAACAGTGATA+GGG 0.570958 4_1:-49326031 Msa0552660:CDS
TCATCTCCAATTTCAGGTAG+CGG 0.574462 4_1:+49321826 None:intergenic
TAGTTTATCCAAGTATTCGT+TGG 0.574722 4_1:+49320695 None:intergenic
GAAACTAATCAATCTGACTA+GGG 0.578979 4_1:-49325196 Msa0552660:CDS
GATTGGGAAGAACACGAGTA+GGG 0.580793 4_1:-49322923 Msa0552660:CDS
AGATTGGGAAGAACACGAGT+AGG 0.581186 4_1:-49322924 Msa0552660:CDS
GAGATGAGATTAGGTCATCA+TGG 0.581589 4_1:-49326239 Msa0552660:CDS
GCATAACAACAATTTGGAGC+AGG 0.582662 4_1:+49325994 None:intergenic
ATGTAGAAGAGTTCTCAAAT+GGG 0.582859 4_1:-49325391 Msa0552660:CDS
AGGCTTCTTTCGACAAAAGG+TGG 0.591222 4_1:-49320875 Msa0552660:CDS
CCTAATCTCATCTCTAGAGA+AGG 0.594329 4_1:+49326248 None:intergenic
TGATATTGTGATCAGACGGC+GGG 0.594893 4_1:+49322897 None:intergenic
CCGTCTGATCACAATATCAC+CGG 0.596646 4_1:-49322893 Msa0552660:CDS
TTCCTGAGAATGAAAATGCT+AGG 0.599982 4_1:-49325347 Msa0552660:CDS
AAATACCTGTCGGCAATATG+GGG 0.600836 4_1:+49322333 None:intergenic
AGTACCGAATTCGGGTACTT+CGG 0.602606 4_1:-49323824 Msa0552660:CDS
GGTTCTGAAAGATGGATCAG+AGG 0.604599 4_1:-49325241 Msa0552660:CDS
GCTACTTGTGCATTCTTACG+TGG 0.605254 4_1:+49322778 None:intergenic
CAGGTGATATATACCAGACC+CGG 0.614257 4_1:-49321244 Msa0552660:CDS
ATCACAATATCACCGGCCGA+CGG 0.621526 4_1:-49322886 Msa0552660:CDS
GATTACACCTCCATTTCACA+TGG 0.622757 4_1:-49326577 Msa0552660:CDS
CCGGCCGACGGAAAATATCA+CGG 0.651457 4_1:-49322874 Msa0552660:CDS
CCATGATTCCAAAACATGAG+TGG 0.652445 4_1:+49326386 None:intergenic
GAGATTAGGTCATCATGGTG+TGG 0.654493 4_1:-49326234 Msa0552660:CDS
ACTAATCAATCTGACTAGGG+TGG 0.654976 4_1:-49325193 Msa0552660:CDS
GAATCAAGAGTACCAAAGCA+TGG 0.660282 4_1:-49323778 Msa0552660:intron
CCGGTGATATTGTGATCAGA+CGG 0.661138 4_1:+49322893 None:intergenic
ATAAGAAGCTGAATACCGGA+AGG 0.662649 4_1:-49325056 Msa0552660:intron
GTGAGTAAAAGGCATGCAAG+TGG 0.668157 4_1:+49326426 None:intergenic
GTGATATTGTGATCAGACGG+CGG 0.677413 4_1:+49322896 None:intergenic
ACAGTGATAGGGATCTGAAG+TGG 0.681498 4_1:-49326020 Msa0552660:CDS
TTCGAAACAGATATTACACA+TGG 0.689278 4_1:+49326272 None:intergenic
TGAAGAAGCTCATACACCTG+TGG 0.696216 4_1:-49325878 Msa0552660:CDS
GGCCGACGGAAAATATCACG+GGG 0.713779 4_1:-49322872 Msa0552660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGTTATTTTATGAATT+TGG - chr4_1:49322121-49322140 Msa0552660:intron 10.0%
!!! ATATTTTACTATACAAAATT+GGG + chr4_1:49325762-49325781 None:intergenic 10.0%
!!! TATATTTTACTATACAAAAT+TGG + chr4_1:49325763-49325782 None:intergenic 10.0%
!!! AATATGATCAATTTTTCTTT+CGG - chr4_1:49321231-49321250 Msa0552660:CDS 15.0%
!! TAACATCATAATTTAATCTA+GGG + chr4_1:49321355-49321374 None:intergenic 15.0%
!!! CTATGAAATTTTAAGAAAAA+AGG - chr4_1:49321758-49321777 Msa0552660:intron 15.0%
!!! AACTTATTTTGATTTCATAA+AGG - chr4_1:49321854-49321873 Msa0552660:CDS 15.0%
!!! TAATGTTATTTGTATTATTC+AGG - chr4_1:49322530-49322549 Msa0552660:intron 15.0%
!!! GATTTTATCGTATTATTTTT+AGG - chr4_1:49323016-49323035 Msa0552660:intron 15.0%
!!! TAATTTGTTGTCTTAATTAA+AGG - chr4_1:49323149-49323168 Msa0552660:intron 15.0%
!! AAAGTCCAATATAAAAAAAA+TGG + chr4_1:49323761-49323780 None:intergenic 15.0%
!! TTAGTAATTCAAAATTCTTT+GGG + chr4_1:49323795-49323814 None:intergenic 15.0%
!!! CATGAATTCATTTTTTAATA+TGG - chr4_1:49324320-49324339 Msa0552660:intron 15.0%
!!! TTTTTCCTACATAAATATTA+TGG - chr4_1:49325071-49325090 Msa0552660:CDS 15.0%
!!! ACTTTTTTTGTCTTAATAAT+GGG + chr4_1:49325195-49325214 None:intergenic 15.0%
!!! TACTTTTTTTGTCTTAATAA+TGG + chr4_1:49325196-49325215 None:intergenic 15.0%
!! TAATGATATAGATTTCAAAA+AGG + chr4_1:49326575-49326594 None:intergenic 15.0%
!! GTAACATCATAATTTAATCT+AGG + chr4_1:49321356-49321375 None:intergenic 20.0%
!!! ATTGTGAAACTTTTGTTAAA+TGG - chr4_1:49321435-49321454 Msa0552660:intron 20.0%
!! ATGTCTATATGCATAAAAAA+AGG - chr4_1:49321623-49321642 Msa0552660:intron 20.0%
!! CTTTAAATAATGTACAAGTT+TGG - chr4_1:49321657-49321676 Msa0552660:intron 20.0%
!!! TATTTTATGAATTTGGTTAG+TGG - chr4_1:49322128-49322147 Msa0552660:intron 20.0%
!!! ATGTTAAAAAAAAGTGTCTA+AGG + chr4_1:49322367-49322386 None:intergenic 20.0%
!! CTCTTAAATTATCTTTGAAT+TGG - chr4_1:49322472-49322491 Msa0552660:intron 20.0%
!!! ATCTTAAATTCATTGACTAT+TGG + chr4_1:49323195-49323214 None:intergenic 20.0%
!!! TTGGACCATTTTTTTTATAT+TGG - chr4_1:49323753-49323772 Msa0552660:intron 20.0%
!! GTTAGTAATTCAAAATTCTT+TGG + chr4_1:49323796-49323815 None:intergenic 20.0%
!! TACTTCTTAAAGAAATCAAT+AGG + chr4_1:49323849-49323868 None:intergenic 20.0%
!! ATAGCTCACTATATTTATTT+AGG - chr4_1:49323966-49323985 Msa0552660:intron 20.0%
!! AAAAAATAATAGACCAAACT+GGG + chr4_1:49325285-49325304 None:intergenic 20.0%
!! ATAAAAAAGTCTTACAAATC+TGG + chr4_1:49325308-49325327 None:intergenic 20.0%
!!! TTTTATTTGAAAACTTCAGA+AGG - chr4_1:49326278-49326297 Msa0552660:CDS 20.0%
!!! TGGTTTTTTGAACTTTTTGT+GGG + chr4_1:49320938-49320957 None:intergenic 25.0%
!!! ATGGTTTTTTGAACTTTTTG+TGG + chr4_1:49320939-49320958 None:intergenic 25.0%
! CAAAAAGTTCAAAAAACCAT+AGG - chr4_1:49320939-49320958 Msa0552660:intron 25.0%
! CTTATAGCATAACAACAATT+TGG + chr4_1:49321305-49321324 None:intergenic 25.0%
!! ATTGTTATCATAGCTTTTGT+TGG - chr4_1:49321381-49321400 Msa0552660:intron 25.0%
!!! TCAATAGCTATTTTGCAATT+AGG + chr4_1:49321530-49321549 None:intergenic 25.0%
! TACCATTGCAAAAAATTGTT+TGG - chr4_1:49321722-49321741 Msa0552660:intron 25.0%
!!! ATCCAAACAATTTTTTGCAA+TGG + chr4_1:49321727-49321746 None:intergenic 25.0%
!! AGGAAGAATTTTGTGATTTT+CGG - chr4_1:49322069-49322088 Msa0552660:intron 25.0%
! AATCGACATTATGGATATTA+TGG - chr4_1:49322265-49322284 Msa0552660:intron 25.0%
! AACAATGAGATAATGATACT+TGG - chr4_1:49322291-49322310 Msa0552660:intron 25.0%
!! CAACAGGTAATTATTTTCAT+TGG - chr4_1:49322437-49322456 Msa0552660:intron 25.0%
! TACAAATAACATTAACCCTT+TGG + chr4_1:49322524-49322543 None:intergenic 25.0%
! ATTGCACAAAACAATTTGAA+AGG - chr4_1:49322742-49322761 Msa0552660:intron 25.0%
! TGAAAGGTAAAATTGATAGA+AGG - chr4_1:49322758-49322777 Msa0552660:CDS 25.0%
!!! CTTTTTTACATAGATGAAAC+AGG - chr4_1:49322931-49322950 Msa0552660:intron 25.0%
! AACATGTTAATAGCAAACAA+CGG + chr4_1:49323047-49323066 None:intergenic 25.0%
!!! ACTATTGGTATTGATTTTAC+AGG + chr4_1:49323180-49323199 None:intergenic 25.0%
! ATGAGGAAGATGATAAAATT+TGG - chr4_1:49323701-49323720 Msa0552660:intron 25.0%
! TGAGGAAGATGATAAAATTT+GGG - chr4_1:49323702-49323721 Msa0552660:intron 25.0%
!! TGATAAAATTTGGGTTATTG+TGG - chr4_1:49323711-49323730 Msa0552660:intron 25.0%
!! AAATTGAGTTTTTCTCTTGT+TGG - chr4_1:49323734-49323753 Msa0552660:intron 25.0%
! AAATGCTAATAAGTAGTAAG+TGG - chr4_1:49324208-49324227 Msa0552660:intron 25.0%
! TATGTGATCAAAATCAAGAT+TGG - chr4_1:49324350-49324369 Msa0552660:intron 25.0%
! ATGTGATCAAAATCAAGATT+GGG - chr4_1:49324351-49324370 Msa0552660:intron 25.0%
! ACAAGTCAGGATAAAATATT+TGG + chr4_1:49324570-49324589 None:intergenic 25.0%
! GTAATTGTAATTGTAACCAA+AGG - chr4_1:49324615-49324634 Msa0552660:intron 25.0%
!! ACGACTTAAAAAGTATAAGT+CGG - chr4_1:49324693-49324712 Msa0552660:intron 25.0%
!!! CAATTCTTGTTCTAAGAAAA+TGG + chr4_1:49324762-49324781 None:intergenic 25.0%
! TTCCTACATAAATATTATGG+TGG - chr4_1:49325074-49325093 Msa0552660:CDS 25.0%
! TTCCACCATAATATTTATGT+AGG + chr4_1:49325079-49325098 None:intergenic 25.0%
! GAAAAAATAATAGACCAAAC+TGG + chr4_1:49325286-49325305 None:intergenic 25.0%
! ATAGAATTTGACATTGTAGA+TGG + chr4_1:49325345-49325364 None:intergenic 25.0%
! ATGTCAAATTCTATTCTATG+TGG - chr4_1:49325351-49325370 Msa0552660:CDS 25.0%
! TTGACACAAAATTTAACGTA+TGG - chr4_1:49325405-49325424 Msa0552660:CDS 25.0%
! TGACACAAAATTTAACGTAT+GGG - chr4_1:49325406-49325425 Msa0552660:CDS 25.0%
!! TTGATTTGAGACTTACATAA+GGG + chr4_1:49325490-49325509 None:intergenic 25.0%
!!! ATTGATTTGAGACTTACATA+AGG + chr4_1:49325491-49325510 None:intergenic 25.0%
!!! GTATATTTGATAGCATTTTC+AGG + chr4_1:49325649-49325668 None:intergenic 25.0%
! TATATAAGTTGTCTATCACT+AGG + chr4_1:49325717-49325736 None:intergenic 25.0%
! TTACTATACAAAATTGGGAA+AGG + chr4_1:49325757-49325776 None:intergenic 25.0%
!!! ATGTACCAAATTTTTAGTCA+TGG - chr4_1:49325969-49325988 Msa0552660:CDS 25.0%
!!! TGTACCAAATTTTTAGTCAT+GGG - chr4_1:49325970-49325989 Msa0552660:CDS 25.0%
! TATATCACCTGTATTATATG+AGG + chr4_1:49326037-49326056 None:intergenic 25.0%
!! GAAATTTTCGTTTTCAATGT+TGG + chr4_1:49326342-49326361 None:intergenic 25.0%
!!! TTTTGTTTTTCAGATACAAG+TGG - chr4_1:49326384-49326403 Msa0552660:CDS 25.0%
! TAATGTATAGAATAATCGTC+AGG - chr4_1:49326498-49326517 Msa0552660:CDS 25.0%
!!! GTTTTGAAGATGCTTTATGT+TGG + chr4_1:49320802-49320821 None:intergenic 30.0%
!! ATTTGTAGTTGGTGAGTAAA+AGG + chr4_1:49320878-49320897 None:intergenic 30.0%
! TTTTACTCACCAACTACAAA+TGG - chr4_1:49320877-49320896 Msa0552660:CDS 30.0%
TGGAAACCCTAATTCAAAAT+GGG + chr4_1:49320979-49320998 None:intergenic 30.0%
TTGGAAACCCTAATTCAAAA+TGG + chr4_1:49320980-49320999 None:intergenic 30.0%
TTCGAAACAGATATTACACA+TGG + chr4_1:49321021-49321040 None:intergenic 30.0%
!! ATTTTTCTTTCGGTCTTATG+TGG - chr4_1:49321241-49321260 Msa0552660:CDS 30.0%
!! AAAGATTAGTTCTGATTCTG+AGG - chr4_1:49321463-49321482 Msa0552660:intron 30.0%
CTGAGGTTACAAATAATAGT+TGG - chr4_1:49321480-49321499 Msa0552660:intron 30.0%
ATAGCTATTGAGAAAAACCA+AGG - chr4_1:49321539-49321558 Msa0552660:intron 30.0%
TAGCTATTGAGAAAAACCAA+GGG - chr4_1:49321540-49321559 Msa0552660:intron 30.0%
!! TATGTAAGTTTCACTTTTGC+TGG - chr4_1:49321585-49321604 Msa0552660:intron 30.0%
!! ATGTAAGTTTCACTTTTGCT+GGG - chr4_1:49321586-49321605 Msa0552660:intron 30.0%
AATGTAGAAGAGTTCTCAAA+TGG - chr4_1:49321898-49321917 Msa0552660:intron 30.0%
ATGTAGAAGAGTTCTCAAAT+GGG - chr4_1:49321899-49321918 Msa0552660:intron 30.0%
TGCAGAAAGTGAATTAAGAA+AGG - chr4_1:49322028-49322047 Msa0552660:intron 30.0%
!! TTAAGAAAGGTTCTGAAAGA+TGG - chr4_1:49322041-49322060 Msa0552660:intron 30.0%
! GGAAGAATTTTGTGATTTTC+GGG - chr4_1:49322070-49322089 Msa0552660:intron 30.0%
TGAAACTAATCAATCTGACT+AGG - chr4_1:49322093-49322112 Msa0552660:intron 30.0%
GAAACTAATCAATCTGACTA+GGG - chr4_1:49322094-49322113 Msa0552660:intron 30.0%
TCATATAAGAAGCTGAATAC+CGG - chr4_1:49322230-49322249 Msa0552660:intron 30.0%
! TCATGGTTTGTCATTGTATT+TGG - chr4_1:49322325-49322344 Msa0552660:intron 30.0%
! GATTTTTGTAGATCTTCAAC+AGG - chr4_1:49322421-49322440 Msa0552660:intron 30.0%
! TTTTGTCAACTACATACCAA+AGG - chr4_1:49322505-49322524 Msa0552660:intron 30.0%
TTTGTCAACTACATACCAAA+GGG - chr4_1:49322506-49322525 Msa0552660:intron 30.0%
ACTACTTCAGTTATGTACTA+TGG + chr4_1:49322801-49322820 None:intergenic 30.0%
TACATAACTGAAGTAGTAAC+AGG - chr4_1:49322804-49322823 Msa0552660:CDS 30.0%
! ATCGAAAGGCATAGATAATA+TGG - chr4_1:49322986-49323005 Msa0552660:intron 30.0%
TTATTCCCGTTATTTACTCA+AGG - chr4_1:49323229-49323248 Msa0552660:intron 30.0%
TAGGATCCTTGAGTAAATAA+CGG + chr4_1:49323238-49323257 None:intergenic 30.0%
GTAACAATGAGTGTAATTGT+AGG + chr4_1:49323351-49323370 None:intergenic 30.0%
TCACATAATTCGTGTAATCA+AGG - chr4_1:49323421-49323440 Msa0552660:intron 30.0%
CACATAATTCGTGTAATCAA+GGG - chr4_1:49323422-49323441 Msa0552660:intron 30.0%
GAAACTTGGTAGAAGAAATT+AGG - chr4_1:49323644-49323663 Msa0552660:intron 30.0%
GTATTATTAGTACTACGAAC+CGG - chr4_1:49323988-49324007 Msa0552660:intron 30.0%
!! TCTTGATTTTGATCACATAG+AGG + chr4_1:49324349-49324368 None:intergenic 30.0%
CAATCAAATCCTGTAAATGT+AGG + chr4_1:49324478-49324497 None:intergenic 30.0%
GAATTTCTAATTCACAAGTC+AGG + chr4_1:49324583-49324602 None:intergenic 30.0%
AAGTAGCACTAATATGGTTA+AGG - chr4_1:49324638-49324657 Msa0552660:intron 30.0%
! CGACTTAAAAAGTATAAGTC+GGG - chr4_1:49324694-49324713 Msa0552660:intron 30.0%
! TCGGGTCAAATGAATTTTAT+TGG - chr4_1:49324712-49324731 Msa0552660:intron 30.0%
GAATGAAATGAAATACCTGT+CGG + chr4_1:49324970-49324989 None:intergenic 30.0%
TATTGTGTTGTGTAATGTTG+AGG + chr4_1:49325041-49325060 None:intergenic 30.0%
ATGATGTCAAGGATATACTA+AGG + chr4_1:49325241-49325260 None:intergenic 30.0%
AGATCAAATTCATGATGTCA+AGG + chr4_1:49325252-49325271 None:intergenic 30.0%
! CGTTAAATTTTGTGTCAATC+TGG + chr4_1:49325403-49325422 None:intergenic 30.0%
TCACTAGGCAAATTCAAAAT+TGG + chr4_1:49325702-49325721 None:intergenic 30.0%
TAGCACTCAAATATTGCTTA+GGG + chr4_1:49325832-49325851 None:intergenic 30.0%
! TATTTGAGTGCTACTACTAA+AGG - chr4_1:49325839-49325858 Msa0552660:CDS 30.0%
TCATCCCATGACTAAAAATT+TGG + chr4_1:49325977-49325996 None:intergenic 30.0%
TGCAACAAAAGAATGTTATG+GGG + chr4_1:49326200-49326219 None:intergenic 30.0%
CTGCAACAAAAGAATGTTAT+GGG + chr4_1:49326201-49326220 None:intergenic 30.0%
TATCATTACCAACGAATACT+TGG - chr4_1:49326587-49326606 Msa0552660:CDS 30.0%
TAGTTTATCCAAGTATTCGT+TGG + chr4_1:49326598-49326617 None:intergenic 30.0%
GTAATCATCTTCTTCGATGA+TGG + chr4_1:49320699-49320718 None:intergenic 35.0%
ATTGTTATCTTCTGCAATGG+AGG + chr4_1:49320757-49320776 None:intergenic 35.0%
GTGATTGTTATCTTCTGCAA+TGG + chr4_1:49320760-49320779 None:intergenic 35.0%
! TAATTCAAAATGGGGTTGGT+TGG + chr4_1:49320970-49320989 None:intergenic 35.0%
! AACCAACCCCATTTTGAATT+AGG - chr4_1:49320969-49320988 Msa0552660:intron 35.0%
! ACCAACCCCATTTTGAATTA+GGG - chr4_1:49320970-49320989 Msa0552660:intron 35.0%
GGAAACCCTAATTCAAAATG+GGG + chr4_1:49320978-49320997 None:intergenic 35.0%
! ATCCATTTTGCATCAACTGT+TGG - chr4_1:49321081-49321100 Msa0552660:intron 35.0%
! TTCCAACAGTTGATGCAAAA+TGG + chr4_1:49321086-49321105 None:intergenic 35.0%
ATGTGGAAAACAACAGTGAT+AGG - chr4_1:49321258-49321277 Msa0552660:intron 35.0%
TGTGGAAAACAACAGTGATA+GGG - chr4_1:49321259-49321278 Msa0552660:intron 35.0%
GGCTAGACTCTGATAATAAT+TGG + chr4_1:49321334-49321353 None:intergenic 35.0%
! CATAGCTTTTGTTGGAATTG+TGG - chr4_1:49321389-49321408 Msa0552660:intron 35.0%
ACAAAAGTTTCACAATCCAC+AGG + chr4_1:49321431-49321450 None:intergenic 35.0%
!! GCTATTTTGCAATTAGGACA+TGG + chr4_1:49321524-49321543 None:intergenic 35.0%
TGCATAAAAAAAGGTTGCAG+CGG - chr4_1:49321632-49321651 Msa0552660:intron 35.0%
TAAAGAGACTGAGTGTATCA+TGG - chr4_1:49321820-49321839 Msa0552660:CDS 35.0%
AAAGAGACTGAGTGTATCAT+GGG - chr4_1:49321821-49321840 Msa0552660:CDS 35.0%
AAAGGATGCACTGAAACAAT+TGG - chr4_1:49321872-49321891 Msa0552660:intron 35.0%
! CTCAAATGGGCTTATGTATA+TGG - chr4_1:49321912-49321931 Msa0552660:intron 35.0%
TTCCTGAGAATGAAAATGCT+AGG - chr4_1:49321943-49321962 Msa0552660:intron 35.0%
! ATCCTAGCATTTTCATTCTC+AGG + chr4_1:49321948-49321967 None:intergenic 35.0%
!! TTGGTTAGTGGATTAGAGAA+TGG - chr4_1:49322140-49322159 Msa0552660:intron 35.0%
TGTGTGTGAAAAACTTCACT+GGG - chr4_1:49322174-49322193 Msa0552660:intron 35.0%
!! AAAAGGGCGTTAAGTGAAAT+TGG - chr4_1:49322200-49322219 Msa0552660:intron 35.0%
! ACTTGGAGAACAACTTTTCA+TGG - chr4_1:49322308-49322327 Msa0552660:intron 35.0%
ACCTATTACAGTCTCATTTG+GGG + chr4_1:49322672-49322691 None:intergenic 35.0%
CACCTATTACAGTCTCATTT+GGG + chr4_1:49322673-49322692 None:intergenic 35.0%
GTTGTTGCAAATAGCTAGAA+GGG + chr4_1:49322870-49322889 None:intergenic 35.0%
AGGATCCTTGAGTAAATAAC+GGG + chr4_1:49323237-49323256 None:intergenic 35.0%
GATCCTATGTTTATGCACAA+AGG - chr4_1:49323251-49323270 Msa0552660:intron 35.0%
GTACCTTTGTGCATAAACAT+AGG + chr4_1:49323257-49323276 None:intergenic 35.0%
GAGATGTAGAGAAAATGTGA+AGG - chr4_1:49323314-49323333 Msa0552660:intron 35.0%
TGAGTGTAATTGTAGGATGT+TGG + chr4_1:49323344-49323363 None:intergenic 35.0%
!!! CCTTTTTTTCAACCAATCAG+CGG + chr4_1:49323541-49323560 None:intergenic 35.0%
AAATGAATCACCATGAGTTG+AGG - chr4_1:49323583-49323602 Msa0552660:intron 35.0%
TTGGTAGAAGAAATTAGGTC+TGG - chr4_1:49323649-49323668 Msa0552660:intron 35.0%
ATATTGGACTTTGCTGCAAT+TGG - chr4_1:49323769-49323788 Msa0552660:intron 35.0%
AGAAGAATTCGGTACGTATA+GGG + chr4_1:49324034-49324053 None:intergenic 35.0%
! ATTTGGATGAAACCACCTTT+TGG + chr4_1:49324553-49324572 None:intergenic 35.0%
!! CATATTAGTGCTACTTCCTT+TGG + chr4_1:49324634-49324653 None:intergenic 35.0%
CAAAGGAAGTAGCACTAATA+TGG - chr4_1:49324632-49324651 Msa0552660:intron 35.0%
GCACTAATATGGTTAAGGAT+TGG - chr4_1:49324643-49324662 Msa0552660:intron 35.0%
TATGGTTAAGGATTGGAACT+TGG - chr4_1:49324650-49324669 Msa0552660:intron 35.0%
GCATTACCATTTACAAGTGT+TGG + chr4_1:49324861-49324880 None:intergenic 35.0%
! AACAGTTGCTGCATTTTGAA+GGG + chr4_1:49324934-49324953 None:intergenic 35.0%
TAATTATGATTTACCCGAGC+TGG - chr4_1:49325106-49325125 Msa0552660:CDS 35.0%
! TTGTGTCAATCTGGAATCAT+TGG + chr4_1:49325394-49325413 None:intergenic 35.0%
AATTTAACGTATGGGTTCTC+AGG - chr4_1:49325414-49325433 Msa0552660:CDS 35.0%
ATTTAACGTATGGGTTCTCA+GGG - chr4_1:49325415-49325434 Msa0552660:CDS 35.0%
TATTCCTATCATTGTGCAGA+AGG + chr4_1:49325537-49325556 None:intergenic 35.0%
GTAGCACTCAAATATTGCTT+AGG + chr4_1:49325833-49325852 None:intergenic 35.0%
AAAGGCTCAAAATGAGTTAC+AGG - chr4_1:49325857-49325876 Msa0552660:CDS 35.0%
!!! TGTTGCATAGTCTTTTTCAG+TGG - chr4_1:49325906-49325925 Msa0552660:CDS 35.0%
ATCAAGATCAACTTCGTATC+CGG + chr4_1:49326068-49326087 None:intergenic 35.0%
CTATTGTAAAAGATGCCATC+CGG - chr4_1:49326089-49326108 Msa0552660:CDS 35.0%
CCTGCAACAAAAGAATGTTA+TGG + chr4_1:49326202-49326221 None:intergenic 35.0%
! CCATAACATTCTTTTGTTGC+AGG - chr4_1:49326199-49326218 Msa0552660:CDS 35.0%
GAGTTGTGCAAAAAATCTGA+GGG - chr4_1:49326233-49326252 Msa0552660:CDS 35.0%
TCATTGCAATACAAGGATGT+AGG - chr4_1:49326301-49326320 Msa0552660:CDS 35.0%
GATTACACCTCCATTTCACA+TGG - chr4_1:49320713-49320732 Msa0552660:three_prime_UTR 40.0%
! TCGTTTTCCATGTGAAATGG+AGG + chr4_1:49320723-49320742 None:intergenic 40.0%
!! TCGTCGTTTTCCATGTGAAA+TGG + chr4_1:49320726-49320745 None:intergenic 40.0%
AGTGGTGTTCCATTTGTAGT+TGG + chr4_1:49320889-49320908 None:intergenic 40.0%
! ATGGAACACCACTCATGTTT+TGG - chr4_1:49320896-49320915 Msa0552660:CDS 40.0%
CCATGATTCCAAAACATGAG+TGG + chr4_1:49320907-49320926 None:intergenic 40.0%
!!! CCACTCATGTTTTGGAATCA+TGG - chr4_1:49320904-49320923 Msa0552660:intron 40.0%
ACCCTAATTCAAAATGGGGT+TGG + chr4_1:49320974-49320993 None:intergenic 40.0%
GTGAGAGTTTGTGATGAGTT+TGG + chr4_1:49320999-49321018 None:intergenic 40.0%
! CCTAATCTCATCTCTAGAGA+AGG + chr4_1:49321045-49321064 None:intergenic 40.0%
! CCTTCTCTAGAGATGAGATT+AGG - chr4_1:49321042-49321061 Msa0552660:intron 40.0%
GAGATGAGATTAGGTCATCA+TGG - chr4_1:49321051-49321070 Msa0552660:CDS 40.0%
CTGCATTACAAGAAGGTTGA+GGG + chr4_1:49321160-49321179 None:intergenic 40.0%
TCAACAGCTGCATTACAAGA+AGG + chr4_1:49321167-49321186 None:intergenic 40.0%
! GCATAACAACAATTTGGAGC+AGG + chr4_1:49321299-49321318 None:intergenic 40.0%
! GCATATAGAAAGCATAGCTC+AGG - chr4_1:49321980-49321999 Msa0552660:intron 40.0%
ACTAATCAATCTGACTAGGG+TGG - chr4_1:49322097-49322116 Msa0552660:intron 40.0%
GTGTGTGTGAAAAACTTCAC+TGG - chr4_1:49322173-49322192 Msa0552660:intron 40.0%
GTGTGTGAAAAACTTCACTG+GGG - chr4_1:49322175-49322194 Msa0552660:intron 40.0%
AAAACTTCACTGGGGTGAAA+AGG - chr4_1:49322183-49322202 Msa0552660:intron 40.0%
AAACTTCACTGGGGTGAAAA+GGG - chr4_1:49322184-49322203 Msa0552660:intron 40.0%
ATAAGAAGCTGAATACCGGA+AGG - chr4_1:49322234-49322253 Msa0552660:intron 40.0%
GTGAAGCAGAATCGACATTA+TGG - chr4_1:49322256-49322275 Msa0552660:intron 40.0%
TCCCCAAATGAGACTGTAAT+AGG - chr4_1:49322668-49322687 Msa0552660:intron 40.0%
CCACCTATTACAGTCTCATT+TGG + chr4_1:49322674-49322693 None:intergenic 40.0%
CCAAATGAGACTGTAATAGG+TGG - chr4_1:49322671-49322690 Msa0552660:intron 40.0%
AATGAGACTGTAATAGGTGG+AGG - chr4_1:49322674-49322693 Msa0552660:intron 40.0%
CGTTGTTGCAAATAGCTAGA+AGG + chr4_1:49322871-49322890 None:intergenic 40.0%
TGTAGCAGAGGATTCAACAA+GGG + chr4_1:49323386-49323405 None:intergenic 40.0%
ATGTAGCAGAGGATTCAACA+AGG + chr4_1:49323387-49323406 None:intergenic 40.0%
TTGTTGAATCCTCTGCTACA+TGG - chr4_1:49323386-49323405 Msa0552660:intron 40.0%
ATCAAGGGAGAATTGCGAAT+TGG - chr4_1:49323437-49323456 Msa0552660:intron 40.0%
!! GAATCAAGAGTACCAAAGCA+TGG - chr4_1:49323512-49323531 Msa0552660:intron 40.0%
! CCGCTGATTGGTTGAAAAAA+AGG - chr4_1:49323538-49323557 Msa0552660:intron 40.0%
AGAGTAGAGAGTGAGAAACT+TGG - chr4_1:49323630-49323649 Msa0552660:intron 40.0%
! AGAAATTAGGTCTGGAACAG+TGG - chr4_1:49323657-49323676 Msa0552660:intron 40.0%
GAAGAATTCGGTACGTATAG+GGG + chr4_1:49324033-49324052 None:intergenic 40.0%
GAGAAGAATTCGGTACGTAT+AGG + chr4_1:49324035-49324054 None:intergenic 40.0%
TTTGCGAGACCTACATTTAC+AGG - chr4_1:49324466-49324485 Msa0552660:intron 40.0%
CACTTGCCAACACTTGTAAA+TGG - chr4_1:49324852-49324871 Msa0552660:intron 40.0%
ATAAACCAAAGCTAGCATGC+TGG + chr4_1:49324883-49324902 None:intergenic 40.0%
!! GCATGCTAGCTTTGGTTTAT+CGG - chr4_1:49324883-49324902 Msa0552660:intron 40.0%
! GAACAGTTGCTGCATTTTGA+AGG + chr4_1:49324935-49324954 None:intergenic 40.0%
AAATACCTGTCGGCAATATG+GGG + chr4_1:49324960-49324979 None:intergenic 40.0%
GAAATACCTGTCGGCAATAT+GGG + chr4_1:49324961-49324980 None:intergenic 40.0%
TGAAATACCTGTCGGCAATA+TGG + chr4_1:49324962-49324981 None:intergenic 40.0%
TTCCACTTAGAATTCCAGCT+CGG + chr4_1:49325123-49325142 None:intergenic 40.0%
!! AAGAGGTTCTGAGTAAAGTC+TGG + chr4_1:49325163-49325182 None:intergenic 40.0%
!! ATAATGGGCAAAGAGAGAAG+AGG + chr4_1:49325180-49325199 None:intergenic 40.0%
ATAATAGACCAAACTGGGCA+AGG + chr4_1:49325280-49325299 None:intergenic 40.0%
! TCATCTCCAATTTCAGGTAG+CGG + chr4_1:49325467-49325486 None:intergenic 40.0%
TAAGGGTCATCTCCAATTTC+AGG + chr4_1:49325473-49325492 None:intergenic 40.0%
TTCTCCTTCTGCACAATGAT+AGG - chr4_1:49325530-49325549 Msa0552660:intron 40.0%
CACAGCTCCTCATATAATAC+AGG - chr4_1:49326027-49326046 Msa0552660:CDS 40.0%
TCAAGATCAACTTCGTATCC+GGG + chr4_1:49326067-49326086 None:intergenic 40.0%
CATTTACTGCAGAGTTTAGC+CGG + chr4_1:49326111-49326130 None:intergenic 40.0%
GGAGTTGTGCAAAAAATCTG+AGG - chr4_1:49326232-49326251 Msa0552660:CDS 40.0%
CAGAAGGTCATTGCAATACA+AGG - chr4_1:49326294-49326313 Msa0552660:CDS 40.0%
AGATACAAGTGGACAAAGTC+AGG - chr4_1:49326395-49326414 Msa0552660:CDS 40.0%
! GCATGCAAGTGGTCTTGATA+TGG + chr4_1:49320856-49320875 None:intergenic 45.0%
! GTGAGTAAAAGGCATGCAAG+TGG + chr4_1:49320867-49320886 None:intergenic 45.0%
GAGATTAGGTCATCATGGTG+TGG - chr4_1:49321056-49321075 Msa0552660:CDS 45.0%
GCTGCATTACAAGAAGGTTG+AGG + chr4_1:49321161-49321180 None:intergenic 45.0%
ACAGTGATAGGGATCTGAAG+TGG - chr4_1:49321270-49321289 Msa0552660:intron 45.0%
TGAAGAAGCTCATACACCTG+TGG - chr4_1:49321412-49321431 Msa0552660:intron 45.0%
!! TAGCTCAGGTTGCTTTGAAG+AGG - chr4_1:49321994-49322013 Msa0552660:intron 45.0%
!! GGTTCTGAAAGATGGATCAG+AGG - chr4_1:49322049-49322068 Msa0552660:intron 45.0%
GAGATGACACGAGTCTCATT+CGG - chr4_1:49322569-49322588 Msa0552660:intron 45.0%
CGTCATCATTGCAGATCGAA+AGG - chr4_1:49322972-49322991 Msa0552660:intron 45.0%
! TGTGTTGTTCCATGTAGCAG+AGG + chr4_1:49323398-49323417 None:intergenic 45.0%
!! TGGTACGTGAGTACCGAATT+CGG - chr4_1:49323457-49323476 Msa0552660:intron 45.0%
! AGTACCGAATTCGGGTACTT+CGG - chr4_1:49323466-49323485 Msa0552660:intron 45.0%
! CTTTGGTACTCTTGATTCGC+TGG + chr4_1:49323510-49323529 None:intergenic 45.0%
AATCAGCGGTAACCATGCTT+TGG + chr4_1:49323527-49323546 None:intergenic 45.0%
AAAGCATGGTTACCGCTGAT+TGG - chr4_1:49323526-49323545 Msa0552660:intron 45.0%
! AATTAGGTCTGGAACAGTGG+TGG - chr4_1:49323660-49323679 Msa0552660:intron 45.0%
! CGTATAGGGGTATACAGCTT+CGG + chr4_1:49324020-49324039 None:intergenic 45.0%
TACGCGACAGGAGAAGAATT+CGG + chr4_1:49324045-49324064 None:intergenic 45.0%
AGATTGGGAAGAACACGAGT+AGG - chr4_1:49324366-49324385 Msa0552660:intron 45.0%
GATTGGGAAGAACACGAGTA+GGG - chr4_1:49324367-49324386 Msa0552660:intron 45.0%
TGATATTGTGATCAGACGGC+GGG + chr4_1:49324396-49324415 None:intergenic 45.0%
GTGATATTGTGATCAGACGG+CGG + chr4_1:49324397-49324416 None:intergenic 45.0%
CCGGTGATATTGTGATCAGA+CGG + chr4_1:49324400-49324419 None:intergenic 45.0%
CCGTCTGATCACAATATCAC+CGG - chr4_1:49324397-49324416 Msa0552660:intron 45.0%
! TTCCCCGTGATATTTTCCGT+CGG + chr4_1:49324423-49324442 None:intergenic 45.0%
ACGGAAAATATCACGGGGAA+TGG - chr4_1:49324423-49324442 Msa0552660:intron 45.0%
GCTACTTGTGCATTCTTACG+TGG + chr4_1:49324515-49324534 None:intergenic 45.0%
! CTTTTGGACGCAGAGATTGA+TGG + chr4_1:49324537-49324556 None:intergenic 45.0%
CATCAATCTCTGCGTCCAAA+AGG - chr4_1:49324535-49324554 Msa0552660:intron 45.0%
! TAATGCCAGCATGCTAGCTT+TGG - chr4_1:49324875-49324894 Msa0552660:intron 45.0%
!! GCATTTTGAAGGGAAGGATG+TGG + chr4_1:49324924-49324943 None:intergenic 45.0%
!! GTTGCTGCATTTTGAAGGGA+AGG + chr4_1:49324930-49324949 None:intergenic 45.0%
TCCACTTAGAATTCCAGCTC+GGG + chr4_1:49325122-49325141 None:intergenic 45.0%
CAGGTGATATATACCAGACC+CGG - chr4_1:49326046-49326065 Msa0552660:CDS 45.0%
TTTGTTGCAGGATACGTGCT+CGG - chr4_1:49326211-49326230 Msa0552660:CDS 45.0%
GTCAGGCTTCTTTCGACAAA+AGG - chr4_1:49326412-49326431 Msa0552660:CDS 45.0%
AGGCTTCTTTCGACAAAAGG+TGG - chr4_1:49326415-49326434 Msa0552660:CDS 45.0%
CAAAAGGTGGTCGAGACTAT+TGG - chr4_1:49326428-49326447 Msa0552660:CDS 45.0%
!!! ATATTTAATTATTGATTAAA+AGG - chr4_1:49322702-49322721 Msa0552660:intron 5.0%
!!! TATTTAATTATTGATTAAAA+GGG - chr4_1:49322703-49322722 Msa0552660:intron 5.0%
!! ATTGTTAAAAAAAAATAAAA+TGG + chr4_1:49323092-49323111 None:intergenic 5.0%
! GTCGATTCTGCTTCACCTTC+CGG + chr4_1:49322252-49322271 None:intergenic 50.0%
!! GGTACGTGAGTACCGAATTC+GGG - chr4_1:49323458-49323477 Msa0552660:intron 50.0%
! TACGCCGAAGTACCCGAATT+CGG + chr4_1:49323473-49323492 None:intergenic 50.0%
ATTCGGGTACTTCGGCGTAT+TGG - chr4_1:49323474-49323493 Msa0552660:intron 50.0%
CTCACTCAGTCCTCAACTCA+TGG + chr4_1:49323596-49323615 None:intergenic 50.0%
GAGGACTGAGTGAGAAGAAC+AGG - chr4_1:49323602-49323621 Msa0552660:intron 50.0%
! GGCTGTTGTTTGAGCAGATG+AGG - chr4_1:49323684-49323703 Msa0552660:intron 50.0%
TATACAGCTTCGGTACGCTC+CGG + chr4_1:49324010-49324029 None:intergenic 50.0%
ATCACAATATCACCGGCCGA+CGG - chr4_1:49324404-49324423 Msa0552660:intron 50.0%
CAATCTCTGCGTCCAAAAGG+TGG - chr4_1:49324538-49324557 Msa0552660:intron 50.0%
TTCTTCCCCATATTGCCGAC+AGG - chr4_1:49324952-49324971 Msa0552660:intron 50.0%
ACCCGAGCTGGAATTCTAAG+TGG - chr4_1:49325118-49325137 Msa0552660:CDS 50.0%
TCTCTATGCCTTGCCCAGTT+TGG - chr4_1:49325269-49325288 Msa0552660:CDS 50.0%
AAGACGCCGCTACCTGAAAT+TGG - chr4_1:49325458-49325477 Msa0552660:intron 50.0%
ATCAACTTCGTATCCGGGTC+TGG + chr4_1:49326062-49326081 None:intergenic 50.0%
TACTGCAGAGTTTAGCCGGA+TGG + chr4_1:49326107-49326126 None:intergenic 50.0%
!! GGGTTGGTTGGACAAGCCTA+TGG + chr4_1:49320958-49320977 None:intergenic 55.0%
ACGTCATGTGTCTGCACCCT+TGG + chr4_1:49321559-49321578 None:intergenic 55.0%
! TAGGTCTGGAACAGTGGTGG+CGG - chr4_1:49323663-49323682 Msa0552660:intron 55.0%
! CCGTGATATTTTCCGTCGGC+CGG + chr4_1:49324419-49324438 None:intergenic 55.0%
CCGGCCGACGGAAAATATCA+CGG - chr4_1:49324416-49324435 Msa0552660:intron 55.0%
CGGCCGACGGAAAATATCAC+GGG - chr4_1:49324417-49324436 Msa0552660:intron 55.0%
GGCCGACGGAAAATATCACG+GGG - chr4_1:49324418-49324437 Msa0552660:intron 55.0%
TCCGGTACGCGGTACGGGTA+CGG + chr4_1:49324076-49324095 None:intergenic 65.0%
ACGGGTTCGCGGTACGCGAC+AGG + chr4_1:49324057-49324076 None:intergenic 70.0%
GCGGTACGGGTACGGGTTCG+CGG + chr4_1:49324068-49324087 None:intergenic 70.0%
CCGGTACGCGGTACGGGTAC+GGG + chr4_1:49324075-49324094 None:intergenic 70.0%
CCCGTACCCGTACCGCGTAC+CGG - chr4_1:49324072-49324091 Msa0552660:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49320687 49326625 49320687 ID=Msa0552660;Name=Msa0552660
chr4_1 mRNA 49320687 49326625 49320687 ID=Msa0552660-mRNA-1;Parent=Msa0552660;Name=Msa0552660-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.37|0.33|0.88|1|1|9|152|633
chr4_1 exon 49320687 49320915 49320687 ID=Msa0552660-mRNA-1:exon:13839;Parent=Msa0552660-mRNA-1
chr4_1 exon 49321046 49321091 49321046 ID=Msa0552660-mRNA-1:exon:13838;Parent=Msa0552660-mRNA-1
chr4_1 exon 49321189 49321263 49321189 ID=Msa0552660-mRNA-1:exon:13837;Parent=Msa0552660-mRNA-1
chr4_1 exon 49321819 49321876 49321819 ID=Msa0552660-mRNA-1:exon:13836;Parent=Msa0552660-mRNA-1
chr4_1 exon 49322339 49322403 49322339 ID=Msa0552660-mRNA-1:exon:13835;Parent=Msa0552660-mRNA-1
chr4_1 exon 49322756 49322944 49322756 ID=Msa0552660-mRNA-1:exon:13834;Parent=Msa0552660-mRNA-1
chr4_1 exon 49323779 49323869 49323779 ID=Msa0552660-mRNA-1:exon:13833;Parent=Msa0552660-mRNA-1
chr4_1 exon 49325057 49325436 49325057 ID=Msa0552660-mRNA-1:exon:13832;Parent=Msa0552660-mRNA-1
chr4_1 exon 49325705 49326625 49325705 ID=Msa0552660-mRNA-1:exon:13831;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49325705 49326625 49325705 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49325057 49325436 49325057 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49323779 49323869 49323779 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49322756 49322944 49322756 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49322339 49322403 49322339 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49321819 49321876 49321819 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49321189 49321263 49321189 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49321046 49321091 49321046 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 CDS 49320839 49320915 49320839 ID=Msa0552660-mRNA-1:cds;Parent=Msa0552660-mRNA-1
chr4_1 three_prime_UTR 49320687 49320838 49320687 ID=Msa0552660-mRNA-1:three_prime_utr;Parent=Msa0552660-mRNA-1
Gene Sequence

>Msa0552660

ATGAGCTTACCATCATCGAAGAAGATGATTACACCTCCATTTCACATGGAAAACGACGATGATTACTCCTCCATTGCAGAAGATAACAATCACTTCTCAGTCTTGAGTGAATCCAACATAAAGCATCTTCAAAACAATGACATCAATCATATTCTATCAATTCTTTCCATATCAAGACCACTTGCATGCCTTTTACTCACCAACTACAAATGGAACACCACTCATGTTTTGGAATCATGGTTTGATAACCCACAAAAAGTTCAAAAAACCATAGGCTTGTCCAACCAACCCCATTTTGAATTAGGGTTTCCAAACTCATCACAAACTCTCACCATGTGTAATATCTGTTTCGAAACCTTCTCTAGAGATGAGATTAGGTCATCATGGTGTGGACATCCATTTTGCATCAACTGTTGGAATCAATATGTCGATATAAACATCGATGATCTTAACTGTTTCAAACTTAGATGCCCTCAACCTTCTTGTAATGCAGCTGTTGATCAAGATATGATTCATCAACTTGCAAGTAAGTCAAGAAAGATTAAATATGATCAATTTTTCTTTCGGTCTTATGTGGAAAACAACAGTGATAGGGATCTGAAGTGGTGTCCTGCTCCAAATTGTTGTTATGCTATAAGTTATGACCAATTATTATCAGAGTCTAGCCCTAGATTAAATTATGATGTTACATGTCATTGTTATCATAGCTTTTGTTGGAATTGTGGTGAAGAAGCTCATACACCTGTGGATTGTGAAACTTTTGTTAAATGGAAGAGAAAGATTAGTTCTGATTCTGAGGTTACAAATAATAGTTGGATTATTGCTAACACAAAACCATGTCCTAATTGCAAAATAGCTATTGAGAAAAACCAAGGGTGCAGACACATGACGTGCAGATTATGTAAGTTTCACTTTTGCTGGGATGCACTGAAACAATTGGTTGAATGTAGAAGAGTTCTCAAATGGGCTTATGTATATGGATATTATCTTCCTGAGAATGAAAATGCTAGGATTGAGTTTTTTGAGCATATAGAAAGCATAGCTCAGGTTGCTTTGAAGAGGCTTCGTCATTGTGCAGAAAGTGAATTAAGAAAGGTTCTGAAAGATGGATCAGAGGAAGAATTTTGTGATTTTCGGGTGAAACTAATCAATCTGACTAGGGTGGCTAAAAGTTATTTTATGAATTTGGTTAGTGGATTAGAGAATGGTTTAGATGTTGTGTGTGTGAAAAACTTCACTGGGGTGAAAAGGGCGTTAAGTGAAATTGGTGACAACTCATATAAGAAGCTGAATACCGGAAGGGAGAATTGCGAATTGGTACGTGAGTACCGAATTCGGGTACTTCGGCGTATTGGTACGCACAAACCAGCGAATCAAGAGTACCAAAGCATGATTGGGAAGAACACGAGTAGGGCAACCCGCCGTCTGATCACAATATCACCGGCCGACGGAAAATATCACGGGGAATGGACATGTGATTATCTTGTATCTTTGCGAGACCTACATTTACAGGATTTGATTGAAGTTGAAGATGATCCACGTAAGAATGCACAAGTAGCCATCAATCTCTGCGTCCAAAAGATGCAAGAATCACCACATCCTTCCCTTCAAAATGCAGCAACTGTTCTTCCCCATATTGCCGACAGGGCTACAAATAGAGATAAACGTAAGACGCCGCTACCTGAAATTGGAGATGACCCTTATGTGATATATACCAGACCCGGATACGAAGTTGATCTTGATTCTATTGTAAAAGATGCCATCCGGCTAAACTCTGCAGATACGTGCTCGGAGTTGTGCAAAAAATCTGAGGGTACTATACAATATACAAGTGGACAAAGTCAGGCTTCTTTCGACAAAAGGTGGTCGAGACTATTGGAACTAAAGAAAACAATTGTATGA

Protein sequence

>Msa0552660

MSLPSSKKMITPPFHMENDDDYSSIAEDNNHFSVLSESNIKHLQNNDINHILSILSISRPLACLLLTNYKWNTTHVLESWFDNPQKVQKTIGLSNQPHFELGFPNSSQTLTMCNICFETFSRDEIRSSWCGHPFCINCWNQYVDINIDDLNCFKLRCPQPSCNAAVDQDMIHQLASKSRKIKYDQFFFRSYVENNSDRDLKWCPAPNCCYAISYDQLLSESSPRLNYDVTCHCYHSFCWNCGEEAHTPVDCETFVKWKRKISSDSEVTNNSWIIANTKPCPNCKIAIEKNQGCRHMTCRLCKFHFCWDALKQLVECRRVLKWAYVYGYYLPENENARIEFFEHIESIAQVALKRLRHCAESELRKVLKDGSEEEFCDFRVKLINLTRVAKSYFMNLVSGLENGLDVVCVKNFTGVKRALSEIGDNSYKKLNTGRENCELVREYRIRVLRRIGTHKPANQEYQSMIGKNTSRATRRLITISPADGKYHGEWTCDYLVSLRDLHLQDLIEVEDDPRKNAQVAINLCVQKMQESPHPSLQNAATVLPHIADRATNRDKRKTPLPEIGDDPYVIYTRPGYEVDLDSIVKDAIRLNSADTCSELCKKSEGTIQYTSGQSQASFDKRWSRLLELKKTIV*