Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342200 | XP_039689544.1 | 41.897 | 253 | 100 | 7 | 3 | 222 | 21 | 259 | 3.79e-56 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342200 | A0A396I0Y9 | 41.897 | 253 | 100 | 7 | 3 | 222 | 50 | 288 | 7.49e-56 | 190 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa1342200 | 0.802081 | 6.644561e-49 | -8.615850e-47 |
| Msa0102070 | Msa1342200 | 0.829149 | 6.048710e-55 | -8.615850e-47 |
| Msa0111510 | Msa1342200 | 0.803535 | 3.328735e-49 | -8.615850e-47 |
| Msa0678930 | Msa1342200 | 0.809838 | 1.552493e-50 | -8.615850e-47 |
| Msa0726140 | Msa1342200 | 0.869251 | 3.560517e-66 | -8.615850e-47 |
| Msa0729800 | Msa1342200 | 0.817228 | 3.676544e-52 | -8.615850e-47 |
| Msa0733290 | Msa1342200 | 0.831151 | 1.963861e-55 | -8.615850e-47 |
| Msa0743810 | Msa1342200 | 0.847401 | 1.183485e-59 | -8.615850e-47 |
| Msa0745060 | Msa1342200 | 0.848731 | 5.085621e-60 | -8.615850e-47 |
| Msa0767720 | Msa1342200 | 0.838962 | 2.105526e-57 | -8.615850e-47 |
| Msa0783160 | Msa1342200 | 0.845209 | 4.682798e-59 | -8.615850e-47 |
| Msa0787600 | Msa1342200 | 0.843740 | 1.163592e-58 | -8.615850e-47 |
| Msa0808010 | Msa1342200 | 0.823011 | 1.742291e-53 | -8.615850e-47 |
| Msa0808020 | Msa1342200 | 0.812449 | 4.215842e-51 | -8.615850e-47 |
| Msa0825860 | Msa1342200 | 0.856322 | 3.478667e-62 | -8.615850e-47 |
| Msa0833290 | Msa1342200 | 0.813558 | 2.409228e-51 | -8.615850e-47 |
| Msa0833300 | Msa1342200 | 0.812238 | 4.688782e-51 | -8.615850e-47 |
| Msa0145750 | Msa1342200 | 0.837219 | 5.915550e-57 | -8.615850e-47 |
| Msa0153910 | Msa1342200 | 0.805540 | 1.270440e-49 | -8.615850e-47 |
| Msa0200000 | Msa1342200 | 0.809703 | 1.659747e-50 | -8.615850e-47 |
| Msa0227480 | Msa1342200 | 0.809654 | 1.700696e-50 | -8.615850e-47 |
| Msa0231000 | Msa1342200 | 0.801730 | 7.842690e-49 | -8.615850e-47 |
| Msa0232850 | Msa1342200 | 0.816729 | 4.759339e-52 | -8.615850e-47 |
| Msa1246880 | Msa1342200 | 0.803368 | 3.604158e-49 | -8.615850e-47 |
| Msa1260100 | Msa1342200 | 0.829604 | 4.691056e-55 | -8.615850e-47 |
| Msa1269670 | Msa1342200 | 0.858753 | 6.633735e-63 | -8.615850e-47 |
| Msa1270230 | Msa1342200 | 0.866596 | 2.539803e-65 | -8.615850e-47 |
| Msa1270240 | Msa1342200 | 0.862657 | 4.339620e-64 | -8.615850e-47 |
| Msa1270270 | Msa1342200 | 0.868906 | 4.608727e-66 | -8.615850e-47 |
| Msa1283330 | Msa1342200 | 0.854297 | 1.351998e-61 | -8.615850e-47 |
| Msa1285930 | Msa1342200 | 0.892213 | 1.952159e-74 | -8.615850e-47 |
| Msa1287800 | Msa1342200 | 0.848800 | 4.864248e-60 | -8.615850e-47 |
| Msa1287810 | Msa1342200 | 0.852590 | 4.177809e-61 | -8.615850e-47 |
| Msa1287830 | Msa1342200 | 0.813002 | 3.190276e-51 | -8.615850e-47 |
| Msa1289430 | Msa1342200 | 0.818901 | 1.539169e-52 | -8.615850e-47 |
| Msa1297210 | Msa1342200 | 0.826739 | 2.300001e-54 | -8.615850e-47 |
| Msa1307890 | Msa1342200 | 0.804122 | 2.513331e-49 | -8.615850e-47 |
| Msa1320300 | Msa1342200 | 0.814328 | 1.629210e-51 | -8.615850e-47 |
| Msa1340590 | Msa1342200 | 0.826474 | 2.659426e-54 | -8.615850e-47 |
| Msa1342200 | Msa1369430 | 0.814756 | 1.310368e-51 | -8.615850e-47 |
| Msa1342200 | Msa1370210 | 0.802105 | 6.568475e-49 | -8.615850e-47 |
| Msa1342200 | Msa1386330 | 0.808732 | 2.679819e-50 | -8.615850e-47 |
| Msa1342200 | Msa1397580 | 0.805362 | 1.384860e-49 | -8.615850e-47 |
| Msa1342200 | Msa1404000 | 0.883884 | 3.074315e-71 | -8.615850e-47 |
| Msa1342200 | Msa1415310 | 0.857142 | 1.997004e-62 | -8.615850e-47 |
| Msa1342200 | Msa1422180 | 0.823884 | 1.089114e-53 | -8.615850e-47 |
| Msa1342200 | Msa1433120 | 0.820077 | 8.296295e-53 | -8.615850e-47 |
| Msa0365500 | Msa1342200 | 0.857459 | 1.609528e-62 | -8.615850e-47 |
| Msa0366580 | Msa1342200 | 0.858611 | 7.314455e-63 | -8.615850e-47 |
| Msa0384800 | Msa1342200 | 0.890195 | 1.226957e-73 | -8.615850e-47 |
| Msa0406120 | Msa1342200 | 0.847527 | 1.093004e-59 | -8.615850e-47 |
| Msa0414410 | Msa1342200 | 0.828804 | 7.332388e-55 | -8.615850e-47 |
| Msa0414420 | Msa1342200 | 0.854731 | 1.012353e-61 | -8.615850e-47 |
| Msa0423020 | Msa1342200 | 0.826937 | 2.062602e-54 | -8.615850e-47 |
| Msa0436780 | Msa1342200 | 0.811311 | 7.460288e-51 | -8.615850e-47 |
| Msa0438620 | Msa1342200 | 0.821530 | 3.845503e-53 | -8.615850e-47 |
| Msa0450000 | Msa1342200 | 0.805514 | 1.287069e-49 | -8.615850e-47 |
| Msa0450570 | Msa1342200 | 0.800507 | 1.395319e-48 | -8.615850e-47 |
| Msa0451730 | Msa1342200 | 0.802753 | 4.829586e-49 | -8.615850e-47 |
| Msa0452900 | Msa1342200 | 0.871073 | 9.021743e-67 | -8.615850e-47 |
| Msa0452910 | Msa1342200 | 0.800003 | 1.767322e-48 | -8.615850e-47 |
| Msa0453120 | Msa1342200 | 0.808543 | 2.940962e-50 | -8.615850e-47 |
| Msa0454370 | Msa1342200 | 0.807357 | 5.257746e-50 | -8.615850e-47 |
| Msa0454910 | Msa1342200 | 0.846086 | 2.709134e-59 | -8.615850e-47 |
| Msa0989060 | Msa1342200 | 0.815265 | 1.009911e-51 | -8.615850e-47 |
| Msa1016280 | Msa1342200 | 0.869076 | 4.058453e-66 | -8.615850e-47 |
| Msa1024240 | Msa1342200 | 0.834417 | 3.033043e-56 | -8.615850e-47 |
| Msa1025360 | Msa1342200 | 0.846914 | 1.610142e-59 | -8.615850e-47 |
| Msa1025370 | Msa1342200 | 0.862119 | 6.349277e-64 | -8.615850e-47 |
| Msa1044830 | Msa1342200 | 0.869364 | 3.273456e-66 | -8.615850e-47 |
| Msa1044840 | Msa1342200 | 0.850555 | 1.574332e-60 | -8.615850e-47 |
| Msa1092990 | Msa1342200 | 0.846396 | 2.230475e-59 | -8.615850e-47 |
| Msa1100980 | Msa1342200 | 0.870653 | 1.239952e-66 | -8.615850e-47 |
| Msa0267000 | Msa1342200 | 0.867411 | 1.396055e-65 | -8.615850e-47 |
| Msa0267010 | Msa1342200 | 0.845734 | 3.375689e-59 | -8.615850e-47 |
| Msa0270520 | Msa1342200 | 0.813619 | 2.334940e-51 | -8.615850e-47 |
| Msa0313760 | Msa1342200 | 0.800848 | 1.188927e-48 | -8.615850e-47 |
| Msa0342240 | Msa1342200 | 0.850205 | 1.973611e-60 | -8.615850e-47 |
| Msa0360510 | Msa1342200 | 0.823895 | 1.082616e-53 | -8.615850e-47 |
| Msa1109440 | Msa1342200 | 0.840114 | 1.056925e-57 | -8.615850e-47 |
| Msa1121200 | Msa1342200 | 0.829257 | 5.696985e-55 | -8.615850e-47 |
| Msa1135740 | Msa1342200 | 0.851751 | 7.237212e-61 | -8.615850e-47 |
| Msa1136090 | Msa1342200 | 0.833245 | 5.956050e-56 | -8.615850e-47 |
| Msa1146110 | Msa1342200 | 0.843891 | 1.060049e-58 | -8.615850e-47 |
| Msa1150370 | Msa1342200 | 0.809422 | 1.906968e-50 | -8.615850e-47 |
| Msa1173920 | Msa1342200 | 0.851817 | 6.931749e-61 | -8.615850e-47 |
| Msa1187940 | Msa1342200 | 0.869242 | 3.585381e-66 | -8.615850e-47 |
| Msa1187950 | Msa1342200 | 0.826525 | 2.585888e-54 | -8.615850e-47 |
| Msa1192640 | Msa1342200 | 0.868686 | 5.431079e-66 | -8.615850e-47 |
| Msa0491590 | Msa1342200 | 0.831238 | 1.869169e-55 | -8.615850e-47 |
| Msa0502760 | Msa1342200 | 0.821261 | 4.436465e-53 | -8.615850e-47 |
| Msa0506270 | Msa1342200 | 0.802128 | 6.496931e-49 | -8.615850e-47 |
| Msa0564890 | Msa1342200 | 0.840101 | 1.064863e-57 | -8.615850e-47 |
| Msa0846210 | Msa1342200 | 0.811845 | 5.709254e-51 | -8.615850e-47 |
| Msa0846330 | Msa1342200 | 0.858741 | 6.691015e-63 | -8.615850e-47 |
| Msa0846350 | Msa1342200 | 0.840623 | 7.778573e-58 | -8.615850e-47 |
| Msa0865320 | Msa1342200 | 0.831016 | 2.119486e-55 | -8.615850e-47 |
| Msa0885280 | Msa1342200 | 0.817595 | 3.039356e-52 | -8.615850e-47 |
| Msa0885290 | Msa1342200 | 0.858939 | 5.835517e-63 | -8.615850e-47 |
| Msa0888370 | Msa1342200 | 0.821495 | 3.916385e-53 | -8.615850e-47 |
| Msa0888420 | Msa1342200 | 0.808816 | 2.571118e-50 | -8.615850e-47 |
| Msa0956270 | Msa1342200 | 0.809176 | 2.153336e-50 | -8.615850e-47 |
| Msa0957860 | Msa1342200 | 0.804431 | 2.167951e-49 | -8.615850e-47 |
| Msa0957960 | Msa1342200 | 0.805859 | 1.089065e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342200 | MtrunA17_Chr4g0002051 | 41.897 | 253 | 100 | 7 | 3 | 222 | 50 | 288 | 1.44e-59 | 190 |
| Msa1342200 | MtrunA17_Chr8g0381471 | 51.613 | 124 | 51 | 3 | 101 | 222 | 28 | 144 | 1.16e-36 | 127 |
| Msa1342200 | MtrunA17_Chr2g0287671 | 25.781 | 256 | 128 | 5 | 3 | 204 | 137 | 384 | 1.13e-21 | 92.4 |
| Msa1342200 | MtrunA17_Chr8g0361701 | 35.185 | 108 | 55 | 4 | 102 | 204 | 145 | 242 | 2.49e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTGGCAGTTTACATATT+TGG | 0.149377 | tig0005289:+48728 | Msa1342200:CDS |
| TCAAGTTTCAAATCAACTTA+TGG | 0.227227 | tig0005289:+49727 | Msa1342200:CDS |
| AACCAATATTTAGGATAAAA+TGG | 0.269706 | tig0005289:-49132 | None:intergenic |
| GCTGATGAATATAAGATTAA+AGG | 0.289801 | tig0005289:+49968 | Msa1342200:CDS |
| ATTGTTTCAGGTAATTGATT+TGG | 0.299049 | tig0005289:+49071 | Msa1342200:intron |
| TAGGAATGATTGTGCGATTT+GGG | 0.304560 | tig0005289:+49919 | Msa1342200:intron |
| TTTCATGGAAAACTTGTTGA+TGG | 0.314872 | tig0005289:+49681 | Msa1342200:CDS |
| ATCAAATGGATGATGGAAAA+AGG | 0.314997 | tig0005289:+49944 | Msa1342200:CDS |
| ATCAAATGGATGATGGAAAA+AGG | 0.314997 | tig0005289:+49993 | Msa1342200:CDS |
| GTCGGAATAAACCAATATTT+AGG | 0.320561 | tig0005289:-49141 | None:intergenic |
| CTTGATACTTGTCTTCCTCT+TGG | 0.328648 | tig0005289:-49561 | None:intergenic |
| TTAGGAATGATTGTGCGATT+TGG | 0.345924 | tig0005289:+49918 | Msa1342200:intron |
| GAAGACAAGTATCAAGAAAA+TGG | 0.346177 | tig0005289:+49568 | Msa1342200:CDS |
| TGACATCGGCAGAAAGGAAT+TGG | 0.366356 | tig0005289:+49502 | Msa1342200:CDS |
| TTGATACTTGTCTTCCTCTT+GGG | 0.380492 | tig0005289:-49560 | None:intergenic |
| ATCATCGTCAATAAATTTGT+TGG | 0.391722 | tig0005289:-48962 | None:intergenic |
| GTTTATTCCGACCACATTAT+CGG | 0.391757 | tig0005289:+49152 | Msa1342200:CDS |
| TCATCGTCAATAAATTTGTT+GGG | 0.434932 | tig0005289:-48961 | None:intergenic |
| AAATGATGAAGAATCTAATC+TGG | 0.436512 | tig0005289:+48712 | Msa1342200:CDS |
| CGATACATGATACCGTTCAT+TGG | 0.450387 | tig0005289:+49465 | Msa1342200:CDS |
| TAAGATTAAAGGTAATCAAA+TGG | 0.465017 | tig0005289:+49979 | Msa1342200:CDS |
| GTGCGATTTGGGTAATCAAA+TGG | 0.465432 | tig0005289:+49930 | Msa1342200:CDS |
| ACAGAGATAGATTACGTTGA+AGG | 0.486255 | tig0005289:+48910 | Msa1342200:CDS |
| ATGGATCCCTCTTTCTATGT+GGG | 0.495254 | tig0005289:+49700 | Msa1342200:CDS |
| TTTGTTGCTCCACGTGGTTA+CGG | 0.500598 | tig0005289:+49772 | Msa1342200:CDS |
| GATGGATCCCTCTTTCTATG+TGG | 0.506410 | tig0005289:+49699 | Msa1342200:CDS |
| AGGAACTAGGAAGTTGCTGC+AGG | 0.508385 | tig0005289:+48930 | Msa1342200:CDS |
| AAAGGTAATCAAATGGATGA+TGG | 0.510152 | tig0005289:+49986 | Msa1342200:CDS |
| TTGGGTAATCAAATGGATGA+TGG | 0.515751 | tig0005289:+49937 | Msa1342200:CDS |
| CATAATTGACATCGGCAGAA+AGG | 0.522205 | tig0005289:+49496 | Msa1342200:CDS |
| TAGATTACGTTGAAGGAACT+AGG | 0.550308 | tig0005289:+48917 | Msa1342200:CDS |
| GATCCCTCTTTCTATGTGGG+TGG | 0.554391 | tig0005289:+49703 | Msa1342200:CDS |
| TGAACCACCCACATAGAAAG+AGG | 0.556566 | tig0005289:-49707 | None:intergenic |
| CCACGTGGTTACGGAAGTCA+AGG | 0.569221 | tig0005289:+49781 | Msa1342200:CDS |
| TGCCGATGTCAATTATGAGA+AGG | 0.572917 | tig0005289:-49490 | None:intergenic |
| CAATGAACGGTATCATGTAT+CGG | 0.573628 | tig0005289:-49464 | None:intergenic |
| TTAATAATTTACCGATAATG+TGG | 0.589365 | tig0005289:-49163 | None:intergenic |
| TAATTTACCGATAATGTGGT+CGG | 0.599623 | tig0005289:-49159 | None:intergenic |
| TTCCTTCTCATAATTGACAT+CGG | 0.629925 | tig0005289:+49488 | Msa1342200:CDS |
| GGAACTAGGAAGTTGCTGCA+GGG | 0.630697 | tig0005289:+48931 | Msa1342200:CDS |
| TCTTAATTGATGTAGGCAAG+AGG | 0.631666 | tig0005289:+48876 | Msa1342200:intron |
| GTTCGTCAGCTCTTCCCAAG+AGG | 0.633659 | tig0005289:+49546 | Msa1342200:CDS |
| TATGAGAAGGAACCAATGAA+CGG | 0.646603 | tig0005289:-49477 | None:intergenic |
| TTCATCATTTAACTTCAGTG+TGG | 0.647375 | tig0005289:-48699 | None:intergenic |
| TTTAAGTTTGTTGCTCCACG+TGG | 0.650344 | tig0005289:+49766 | Msa1342200:CDS |
| GAACCACCCACATAGAAAGA+GGG | 0.662397 | tig0005289:-49706 | None:intergenic |
| CCTTGACTTCCGTAACCACG+TGG | 0.696038 | tig0005289:-49781 | None:intergenic |
| CACGTGGTTACGGAAGTCAA+GGG | 0.703622 | tig0005289:+49782 | Msa1342200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTCATAATTTTTTATTT+AGG | + | tig0005289:49900-49919 | Msa1342200:intron | 10.0% |
| !!! | ATACTCATAATTTTTTATTT+AGG | + | tig0005289:49900-49919 | Msa1342200:intron | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49327-49346 | Msa1342200:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49327-49346 | Msa1342200:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49327-49346 | Msa1342200:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49327-49346 | Msa1342200:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49327-49346 | Msa1342200:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49327-49346 | Msa1342200:intron | 100.0% |
| !! | TAATTAATCTTAATTGATGT+AGG | + | tig0005289:48869-48888 | Msa1342200:intron | 15.0% |
| !! | TAATTAATCTTAATTGATGT+AGG | + | tig0005289:48869-48888 | Msa1342200:intron | 15.0% |
| !! | ATTTCTCTTTAAATTGTTTC+AGG | + | tig0005289:49059-49078 | Msa1342200:intron | 20.0% |
| !!! | AACCAATATTTAGGATAAAA+TGG | - | tig0005289:49135-49154 | None:intergenic | 20.0% |
| !! | TTAATAATTTACCGATAATG+TGG | - | tig0005289:49166-49185 | None:intergenic | 20.0% |
| !!! | TTTTTTATATCTTACGAGTT+TGG | - | tig0005289:49808-49827 | None:intergenic | 20.0% |
| !! | TAAGATTAAAGGTAATCAAA+TGG | + | tig0005289:49979-49998 | Msa1342200:CDS | 20.0% |
| !! | ATTTCTCTTTAAATTGTTTC+AGG | + | tig0005289:49059-49078 | Msa1342200:intron | 20.0% |
| !!! | AACCAATATTTAGGATAAAA+TGG | - | tig0005289:49135-49154 | None:intergenic | 20.0% |
| !! | TTAATAATTTACCGATAATG+TGG | - | tig0005289:49166-49185 | None:intergenic | 20.0% |
| !!! | TTTTTTATATCTTACGAGTT+TGG | - | tig0005289:49808-49827 | None:intergenic | 20.0% |
| !! | TAAGATTAAAGGTAATCAAA+TGG | + | tig0005289:49979-49998 | Msa1342200:CDS | 20.0% |
| ! | AAATGATGAAGAATCTAATC+TGG | + | tig0005289:48712-48731 | Msa1342200:CDS | 25.0% |
| !!! | CAGCTTTTTGATTATATTGA+TGG | - | tig0005289:48754-48773 | None:intergenic | 25.0% |
| !! | TCATCGTCAATAAATTTGTT+GGG | - | tig0005289:48964-48983 | None:intergenic | 25.0% |
| ! | ATCATCGTCAATAAATTTGT+TGG | - | tig0005289:48965-48984 | None:intergenic | 25.0% |
| !! | ATTGTTTCAGGTAATTGATT+TGG | + | tig0005289:49071-49090 | Msa1342200:intron | 25.0% |
| !! | CACCATTTTATCCTAAATAT+TGG | + | tig0005289:49130-49149 | Msa1342200:CDS | 25.0% |
| !!! | ATTTTAATGTATGCTCATTG+TGG | + | tig0005289:49215-49234 | Msa1342200:intron | 25.0% |
| ! | ACCAACAGAAAAAATGATAA+AGG | + | tig0005289:49281-49300 | Msa1342200:intron | 25.0% |
| ! | CCAACAGAAAAAATGATAAA+GGG | + | tig0005289:49282-49301 | Msa1342200:intron | 25.0% |
| ! | CATAGCTATGTAGATAAAAA+GGG | - | tig0005289:49410-49429 | None:intergenic | 25.0% |
| ! | TCATAGCTATGTAGATAAAA+AGG | - | tig0005289:49411-49430 | None:intergenic | 25.0% |
| !!! | ACATTTTTAGTCTCTTTTCA+TGG | + | tig0005289:49666-49685 | Msa1342200:intron | 25.0% |
| ! | TCAAGTTTCAAATCAACTTA+TGG | + | tig0005289:49727-49746 | Msa1342200:CDS | 25.0% |
| ! | GCTGATGAATATAAGATTAA+AGG | + | tig0005289:49968-49987 | Msa1342200:CDS | 25.0% |
| ! | AAATGATGAAGAATCTAATC+TGG | + | tig0005289:48712-48731 | Msa1342200:CDS | 25.0% |
| !!! | CAGCTTTTTGATTATATTGA+TGG | - | tig0005289:48754-48773 | None:intergenic | 25.0% |
| !! | TCATCGTCAATAAATTTGTT+GGG | - | tig0005289:48964-48983 | None:intergenic | 25.0% |
| ! | ATCATCGTCAATAAATTTGT+TGG | - | tig0005289:48965-48984 | None:intergenic | 25.0% |
| !! | ATTGTTTCAGGTAATTGATT+TGG | + | tig0005289:49071-49090 | Msa1342200:intron | 25.0% |
| !! | CACCATTTTATCCTAAATAT+TGG | + | tig0005289:49130-49149 | Msa1342200:CDS | 25.0% |
| !!! | ATTTTAATGTATGCTCATTG+TGG | + | tig0005289:49215-49234 | Msa1342200:intron | 25.0% |
| ! | ACCAACAGAAAAAATGATAA+AGG | + | tig0005289:49281-49300 | Msa1342200:intron | 25.0% |
| ! | CCAACAGAAAAAATGATAAA+GGG | + | tig0005289:49282-49301 | Msa1342200:intron | 25.0% |
| ! | CATAGCTATGTAGATAAAAA+GGG | - | tig0005289:49410-49429 | None:intergenic | 25.0% |
| ! | TCATAGCTATGTAGATAAAA+AGG | - | tig0005289:49411-49430 | None:intergenic | 25.0% |
| !!! | ACATTTTTAGTCTCTTTTCA+TGG | + | tig0005289:49666-49685 | Msa1342200:intron | 25.0% |
| ! | TCAAGTTTCAAATCAACTTA+TGG | + | tig0005289:49727-49746 | Msa1342200:CDS | 25.0% |
| ! | GCTGATGAATATAAGATTAA+AGG | + | tig0005289:49968-49987 | Msa1342200:CDS | 25.0% |
| !! | TTTAACTTCAGTGTGGTTTT+AGG | - | tig0005289:48695-48714 | None:intergenic | 30.0% |
| ! | TTCATCATTTAACTTCAGTG+TGG | - | tig0005289:48702-48721 | None:intergenic | 30.0% |
| AATCTGGCAGTTTACATATT+TGG | + | tig0005289:48728-48747 | Msa1342200:CDS | 30.0% | |
| GTCGGAATAAACCAATATTT+AGG | - | tig0005289:49144-49163 | None:intergenic | 30.0% | |
| TAATTTACCGATAATGTGGT+CGG | - | tig0005289:49162-49181 | None:intergenic | 30.0% | |
| ATTTATTTAGCAACTCGTGT+TGG | + | tig0005289:49248-49267 | Msa1342200:intron | 30.0% | |
| !!! | CCCTTTATCATTTTTTCTGT+TGG | - | tig0005289:49285-49304 | None:intergenic | 30.0% |
| TTCCTTCTCATAATTGACAT+CGG | + | tig0005289:49488-49507 | Msa1342200:CDS | 30.0% | |
| GAAGACAAGTATCAAGAAAA+TGG | + | tig0005289:49568-49587 | Msa1342200:CDS | 30.0% | |
| !! | TTTCATGGAAAACTTGTTGA+TGG | + | tig0005289:49681-49700 | Msa1342200:CDS | 30.0% |
| !! | ATCAAATGGATGATGGAAAA+AGG | + | tig0005289:49944-49963 | Msa1342200:CDS | 30.0% |
| AAAGGTAATCAAATGGATGA+TGG | + | tig0005289:49986-50005 | Msa1342200:CDS | 30.0% | |
| !! | ATCAAATGGATGATGGAAAA+AGG | + | tig0005289:49944-49963 | Msa1342200:CDS | 30.0% |
| !! | TTTAACTTCAGTGTGGTTTT+AGG | - | tig0005289:48695-48714 | None:intergenic | 30.0% |
| ! | TTCATCATTTAACTTCAGTG+TGG | - | tig0005289:48702-48721 | None:intergenic | 30.0% |
| AATCTGGCAGTTTACATATT+TGG | + | tig0005289:48728-48747 | Msa1342200:CDS | 30.0% | |
| GTCGGAATAAACCAATATTT+AGG | - | tig0005289:49144-49163 | None:intergenic | 30.0% | |
| TAATTTACCGATAATGTGGT+CGG | - | tig0005289:49162-49181 | None:intergenic | 30.0% | |
| ATTTATTTAGCAACTCGTGT+TGG | + | tig0005289:49248-49267 | Msa1342200:intron | 30.0% | |
| !!! | CCCTTTATCATTTTTTCTGT+TGG | - | tig0005289:49285-49304 | None:intergenic | 30.0% |
| TTCCTTCTCATAATTGACAT+CGG | + | tig0005289:49488-49507 | Msa1342200:CDS | 30.0% | |
| GAAGACAAGTATCAAGAAAA+TGG | + | tig0005289:49568-49587 | Msa1342200:CDS | 30.0% | |
| !! | TTTCATGGAAAACTTGTTGA+TGG | + | tig0005289:49681-49700 | Msa1342200:CDS | 30.0% |
| !! | ATCAAATGGATGATGGAAAA+AGG | + | tig0005289:49944-49963 | Msa1342200:CDS | 30.0% |
| AAAGGTAATCAAATGGATGA+TGG | + | tig0005289:49986-50005 | Msa1342200:CDS | 30.0% | |
| !! | ATCAAATGGATGATGGAAAA+AGG | + | tig0005289:49944-49963 | Msa1342200:CDS | 30.0% |
| TCTTAATTGATGTAGGCAAG+AGG | + | tig0005289:48876-48895 | Msa1342200:intron | 35.0% | |
| ACAGAGATAGATTACGTTGA+AGG | + | tig0005289:48910-48929 | Msa1342200:CDS | 35.0% | |
| TAGATTACGTTGAAGGAACT+AGG | + | tig0005289:48917-48936 | Msa1342200:CDS | 35.0% | |
| GTTTATTCCGACCACATTAT+CGG | + | tig0005289:49152-49171 | Msa1342200:CDS | 35.0% | |
| TATCGAAAGCGATTTATGTG+TGG | + | tig0005289:49306-49325 | Msa1342200:intron | 35.0% | |
| ATCGAAAGCGATTTATGTGT+GGG | + | tig0005289:49307-49326 | Msa1342200:intron | 35.0% | |
| !! | GAGTGCTGAGTTTATTTCAA+AGG | + | tig0005289:49351-49370 | Msa1342200:intron | 35.0% |
| CAATGAACGGTATCATGTAT+CGG | - | tig0005289:49467-49486 | None:intergenic | 35.0% | |
| TATGAGAAGGAACCAATGAA+CGG | - | tig0005289:49480-49499 | None:intergenic | 35.0% | |
| TTGATACTTGTCTTCCTCTT+GGG | - | tig0005289:49563-49582 | None:intergenic | 35.0% | |
| TTAGGAATGATTGTGCGATT+TGG | + | tig0005289:49918-49937 | Msa1342200:intron | 35.0% | |
| TAGGAATGATTGTGCGATTT+GGG | + | tig0005289:49919-49938 | Msa1342200:intron | 35.0% | |
| TTGGGTAATCAAATGGATGA+TGG | + | tig0005289:49937-49956 | Msa1342200:CDS | 35.0% | |
| TCTTAATTGATGTAGGCAAG+AGG | + | tig0005289:48876-48895 | Msa1342200:intron | 35.0% | |
| ACAGAGATAGATTACGTTGA+AGG | + | tig0005289:48910-48929 | Msa1342200:CDS | 35.0% | |
| TAGATTACGTTGAAGGAACT+AGG | + | tig0005289:48917-48936 | Msa1342200:CDS | 35.0% | |
| GTTTATTCCGACCACATTAT+CGG | + | tig0005289:49152-49171 | Msa1342200:CDS | 35.0% | |
| TATCGAAAGCGATTTATGTG+TGG | + | tig0005289:49306-49325 | Msa1342200:intron | 35.0% | |
| ATCGAAAGCGATTTATGTGT+GGG | + | tig0005289:49307-49326 | Msa1342200:intron | 35.0% | |
| !! | GAGTGCTGAGTTTATTTCAA+AGG | + | tig0005289:49351-49370 | Msa1342200:intron | 35.0% |
| CAATGAACGGTATCATGTAT+CGG | - | tig0005289:49467-49486 | None:intergenic | 35.0% | |
| TATGAGAAGGAACCAATGAA+CGG | - | tig0005289:49480-49499 | None:intergenic | 35.0% | |
| TTGATACTTGTCTTCCTCTT+GGG | - | tig0005289:49563-49582 | None:intergenic | 35.0% | |
| TTAGGAATGATTGTGCGATT+TGG | + | tig0005289:49918-49937 | Msa1342200:intron | 35.0% | |
| TAGGAATGATTGTGCGATTT+GGG | + | tig0005289:49919-49938 | Msa1342200:intron | 35.0% | |
| TTGGGTAATCAAATGGATGA+TGG | + | tig0005289:49937-49956 | Msa1342200:CDS | 35.0% | |
| TCGAAAGCGATTTATGTGTG+GGG | + | tig0005289:49308-49327 | Msa1342200:intron | 40.0% | |
| CGATACATGATACCGTTCAT+TGG | + | tig0005289:49465-49484 | Msa1342200:CDS | 40.0% | |
| TGCCGATGTCAATTATGAGA+AGG | - | tig0005289:49493-49512 | None:intergenic | 40.0% | |
| CATAATTGACATCGGCAGAA+AGG | + | tig0005289:49496-49515 | Msa1342200:CDS | 40.0% | |
| CTTGATACTTGTCTTCCTCT+TGG | - | tig0005289:49564-49583 | None:intergenic | 40.0% | |
| ATGGATCCCTCTTTCTATGT+GGG | + | tig0005289:49700-49719 | Msa1342200:CDS | 40.0% | |
| !! | TTTAAGTTTGTTGCTCCACG+TGG | + | tig0005289:49766-49785 | Msa1342200:CDS | 40.0% |
| ! | GTGCGATTTGGGTAATCAAA+TGG | + | tig0005289:49930-49949 | Msa1342200:CDS | 40.0% |
| TCGAAAGCGATTTATGTGTG+GGG | + | tig0005289:49308-49327 | Msa1342200:intron | 40.0% | |
| CGATACATGATACCGTTCAT+TGG | + | tig0005289:49465-49484 | Msa1342200:CDS | 40.0% | |
| TGCCGATGTCAATTATGAGA+AGG | - | tig0005289:49493-49512 | None:intergenic | 40.0% | |
| CATAATTGACATCGGCAGAA+AGG | + | tig0005289:49496-49515 | Msa1342200:CDS | 40.0% | |
| CTTGATACTTGTCTTCCTCT+TGG | - | tig0005289:49564-49583 | None:intergenic | 40.0% | |
| ATGGATCCCTCTTTCTATGT+GGG | + | tig0005289:49700-49719 | Msa1342200:CDS | 40.0% | |
| !! | TTTAAGTTTGTTGCTCCACG+TGG | + | tig0005289:49766-49785 | Msa1342200:CDS | 40.0% |
| ! | GTGCGATTTGGGTAATCAAA+TGG | + | tig0005289:49930-49949 | Msa1342200:CDS | 40.0% |
| ! | TTAGCAACTCGTGTTGGCAT+TGG | + | tig0005289:49254-49273 | Msa1342200:intron | 45.0% |
| CGAAAGCGATTTATGTGTGG+GGG | + | tig0005289:49309-49328 | Msa1342200:intron | 45.0% | |
| GAAAGCGATTTATGTGTGGG+GGG | + | tig0005289:49310-49329 | Msa1342200:intron | 45.0% | |
| AAAGCGATTTATGTGTGGGG+GGG | + | tig0005289:49311-49330 | Msa1342200:intron | 45.0% | |
| TGACATCGGCAGAAAGGAAT+TGG | + | tig0005289:49502-49521 | Msa1342200:CDS | 45.0% | |
| GATGGATCCCTCTTTCTATG+TGG | + | tig0005289:49699-49718 | Msa1342200:CDS | 45.0% | |
| GAACCACCCACATAGAAAGA+GGG | - | tig0005289:49709-49728 | None:intergenic | 45.0% | |
| TGAACCACCCACATAGAAAG+AGG | - | tig0005289:49710-49729 | None:intergenic | 45.0% | |
| TTTGTTGCTCCACGTGGTTA+CGG | + | tig0005289:49772-49791 | Msa1342200:CDS | 45.0% | |
| ! | TTAGCAACTCGTGTTGGCAT+TGG | + | tig0005289:49254-49273 | Msa1342200:intron | 45.0% |
| CGAAAGCGATTTATGTGTGG+GGG | + | tig0005289:49309-49328 | Msa1342200:intron | 45.0% | |
| GAAAGCGATTTATGTGTGGG+GGG | + | tig0005289:49310-49329 | Msa1342200:intron | 45.0% | |
| AAAGCGATTTATGTGTGGGG+GGG | + | tig0005289:49311-49330 | Msa1342200:intron | 45.0% | |
| TGACATCGGCAGAAAGGAAT+TGG | + | tig0005289:49502-49521 | Msa1342200:CDS | 45.0% | |
| GATGGATCCCTCTTTCTATG+TGG | + | tig0005289:49699-49718 | Msa1342200:CDS | 45.0% | |
| GAACCACCCACATAGAAAGA+GGG | - | tig0005289:49709-49728 | None:intergenic | 45.0% | |
| TGAACCACCCACATAGAAAG+AGG | - | tig0005289:49710-49729 | None:intergenic | 45.0% | |
| TTTGTTGCTCCACGTGGTTA+CGG | + | tig0005289:49772-49791 | Msa1342200:CDS | 45.0% | |
| !!! | TAAATATTATCTTATTTTAT+AGG | + | tig0005289:48829-48848 | Msa1342200:intron | 5.0% |
| !!! | TAAATATTATCTTATTTTAT+AGG | + | tig0005289:48829-48848 | Msa1342200:intron | 5.0% |
| AGGAACTAGGAAGTTGCTGC+AGG | + | tig0005289:48930-48949 | Msa1342200:CDS | 50.0% | |
| GGAACTAGGAAGTTGCTGCA+GGG | + | tig0005289:48931-48950 | Msa1342200:CDS | 50.0% | |
| AAGCGATTTATGTGTGGGGG+GGG | + | tig0005289:49312-49331 | Msa1342200:intron | 50.0% | |
| GATCCCTCTTTCTATGTGGG+TGG | + | tig0005289:49703-49722 | Msa1342200:CDS | 50.0% | |
| CACGTGGTTACGGAAGTCAA+GGG | + | tig0005289:49782-49801 | Msa1342200:CDS | 50.0% | |
| AGGAACTAGGAAGTTGCTGC+AGG | + | tig0005289:48930-48949 | Msa1342200:CDS | 50.0% | |
| GGAACTAGGAAGTTGCTGCA+GGG | + | tig0005289:48931-48950 | Msa1342200:CDS | 50.0% | |
| AAGCGATTTATGTGTGGGGG+GGG | + | tig0005289:49312-49331 | Msa1342200:intron | 50.0% | |
| GATCCCTCTTTCTATGTGGG+TGG | + | tig0005289:49703-49722 | Msa1342200:CDS | 50.0% | |
| CACGTGGTTACGGAAGTCAA+GGG | + | tig0005289:49782-49801 | Msa1342200:CDS | 50.0% | |
| AGCGATTTATGTGTGGGGGG+GGG | + | tig0005289:49313-49332 | Msa1342200:intron | 55.0% | |
| GTTCGTCAGCTCTTCCCAAG+AGG | + | tig0005289:49546-49565 | Msa1342200:CDS | 55.0% | |
| CCTTGACTTCCGTAACCACG+TGG | - | tig0005289:49784-49803 | None:intergenic | 55.0% | |
| CCACGTGGTTACGGAAGTCA+AGG | + | tig0005289:49781-49800 | Msa1342200:CDS | 55.0% | |
| AGCGATTTATGTGTGGGGGG+GGG | + | tig0005289:49313-49332 | Msa1342200:intron | 55.0% | |
| GTTCGTCAGCTCTTCCCAAG+AGG | + | tig0005289:49546-49565 | Msa1342200:CDS | 55.0% | |
| CCTTGACTTCCGTAACCACG+TGG | - | tig0005289:49784-49803 | None:intergenic | 55.0% | |
| CCACGTGGTTACGGAAGTCA+AGG | + | tig0005289:49781-49800 | Msa1342200:CDS | 55.0% | |
| GCGATTTATGTGTGGGGGGG+GGG | + | tig0005289:49314-49333 | Msa1342200:intron | 60.0% | |
| CGATTTATGTGTGGGGGGGG+GGG | + | tig0005289:49315-49334 | Msa1342200:intron | 60.0% | |
| GATTTATGTGTGGGGGGGGG+GGG | + | tig0005289:49316-49335 | Msa1342200:intron | 60.0% | |
| ATTTATGTGTGGGGGGGGGG+GGG | + | tig0005289:49317-49336 | Msa1342200:intron | 60.0% | |
| GCGATTTATGTGTGGGGGGG+GGG | + | tig0005289:49314-49333 | Msa1342200:intron | 60.0% | |
| CGATTTATGTGTGGGGGGGG+GGG | + | tig0005289:49315-49334 | Msa1342200:intron | 60.0% | |
| GATTTATGTGTGGGGGGGGG+GGG | + | tig0005289:49316-49335 | Msa1342200:intron | 60.0% | |
| ATTTATGTGTGGGGGGGGGG+GGG | + | tig0005289:49317-49336 | Msa1342200:intron | 60.0% | |
| TTTATGTGTGGGGGGGGGGG+GGG | + | tig0005289:49318-49337 | Msa1342200:intron | 65.0% | |
| TTTATGTGTGGGGGGGGGGG+GGG | + | tig0005289:49318-49337 | Msa1342200:intron | 65.0% | |
| TTATGTGTGGGGGGGGGGGG+GGG | + | tig0005289:49319-49338 | Msa1342200:intron | 70.0% | |
| TTATGTGTGGGGGGGGGGGG+GGG | + | tig0005289:49319-49338 | Msa1342200:intron | 70.0% | |
| TATGTGTGGGGGGGGGGGGG+GGG | + | tig0005289:49320-49339 | Msa1342200:intron | 75.0% | |
| TATGTGTGGGGGGGGGGGGG+GGG | + | tig0005289:49320-49339 | Msa1342200:intron | 75.0% | |
| ! | ATGTGTGGGGGGGGGGGGGG+GGG | + | tig0005289:49321-49340 | Msa1342200:intron | 80.0% |
| ! | ATGTGTGGGGGGGGGGGGGG+GGG | + | tig0005289:49321-49340 | Msa1342200:intron | 80.0% |
| ! | TGTGTGGGGGGGGGGGGGGG+GGG | + | tig0005289:49322-49341 | Msa1342200:intron | 85.0% |
| ! | TGTGTGGGGGGGGGGGGGGG+GGG | + | tig0005289:49322-49341 | Msa1342200:intron | 85.0% |
| ! | GTGTGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49323-49342 | Msa1342200:intron | 90.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49324-49343 | Msa1342200:intron | 90.0% |
| ! | GTGTGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49323-49342 | Msa1342200:intron | 90.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49324-49343 | Msa1342200:intron | 90.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49325-49344 | Msa1342200:intron | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49326-49345 | Msa1342200:intron | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49325-49344 | Msa1342200:intron | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | tig0005289:49326-49345 | Msa1342200:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0005289 | gene | 48655 | 50021 | 48655 | ID=Msa1342200;Name=Msa1342200 |
| tig0005289 | mRNA | 48655 | 50021 | 48655 | ID=Msa1342200-mRNA-1;Parent=Msa1342200;Name=Msa1342200-mRNA-1;_AED=0.48;_eAED=0.49;_QI=0|0|0|0.42|1|1|7|0|223 |
| tig0005289 | exon | 48655 | 48660 | 48655 | ID=Msa1342200-mRNA-1:exon:3494;Parent=Msa1342200-mRNA-1 |
| tig0005289 | exon | 48671 | 48777 | 48671 | ID=Msa1342200-mRNA-1:exon:3495;Parent=Msa1342200-mRNA-1 |
| tig0005289 | exon | 48891 | 48984 | 48891 | ID=Msa1342200-mRNA-1:exon:3496;Parent=Msa1342200-mRNA-1 |
| tig0005289 | exon | 49081 | 49173 | 49081 | ID=Msa1342200-mRNA-1:exon:3497;Parent=Msa1342200-mRNA-1 |
| tig0005289 | exon | 49455 | 49589 | 49455 | ID=Msa1342200-mRNA-1:exon:3498;Parent=Msa1342200-mRNA-1 |
| tig0005289 | exon | 49676 | 49812 | 49676 | ID=Msa1342200-mRNA-1:exon:3499;Parent=Msa1342200-mRNA-1 |
| tig0005289 | exon | 49922 | 50021 | 49922 | ID=Msa1342200-mRNA-1:exon:3500;Parent=Msa1342200-mRNA-1 |
| tig0005289 | CDS | 48655 | 48660 | 48655 | ID=Msa1342200-mRNA-1:cds;Parent=Msa1342200-mRNA-1 |
| tig0005289 | CDS | 48671 | 48777 | 48671 | ID=Msa1342200-mRNA-1:cds;Parent=Msa1342200-mRNA-1 |
| tig0005289 | CDS | 48891 | 48984 | 48891 | ID=Msa1342200-mRNA-1:cds;Parent=Msa1342200-mRNA-1 |
| tig0005289 | CDS | 49081 | 49173 | 49081 | ID=Msa1342200-mRNA-1:cds;Parent=Msa1342200-mRNA-1 |
| tig0005289 | CDS | 49455 | 49589 | 49455 | ID=Msa1342200-mRNA-1:cds;Parent=Msa1342200-mRNA-1 |
| tig0005289 | CDS | 49676 | 49812 | 49676 | ID=Msa1342200-mRNA-1:cds;Parent=Msa1342200-mRNA-1 |
| tig0005289 | CDS | 49922 | 50021 | 49922 | ID=Msa1342200-mRNA-1:cds;Parent=Msa1342200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
