Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522280 | CAB65283.1 | 99.145 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 1.57e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522280 | sp|Q02921|NO93_SOYBN | 58.025 | 81 | 34 | 0 | 27 | 107 | 17 | 97 | 3.19e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522280 | Q9SBR6 | 99.145 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 7.50e-79 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0522280 | 0.803790 | 2.946105e-49 | -8.615850e-47 |
| Msa0021400 | Msa0522280 | 0.810723 | 1.000494e-50 | -8.615850e-47 |
| Msa0024950 | Msa0522280 | 0.800717 | 1.264139e-48 | -8.615850e-47 |
| Msa0029700 | Msa0522280 | 0.807381 | 5.197475e-50 | -8.615850e-47 |
| Msa0032770 | Msa0522280 | 0.805628 | 1.217643e-49 | -8.615850e-47 |
| Msa0034100 | Msa0522280 | -0.815326 | 9.791172e-52 | -8.615850e-47 |
| Msa0038010 | Msa0522280 | 0.800285 | 1.548609e-48 | -8.615850e-47 |
| Msa0046430 | Msa0522280 | 0.817165 | 3.797939e-52 | -8.615850e-47 |
| Msa0048410 | Msa0522280 | -0.810827 | 9.496063e-51 | -8.615850e-47 |
| Msa0054860 | Msa0522280 | 0.808520 | 2.974415e-50 | -8.615850e-47 |
| Msa0057860 | Msa0522280 | 0.805192 | 1.503350e-49 | -8.615850e-47 |
| Msa0059880 | Msa0522280 | 0.800682 | 1.285345e-48 | -8.615850e-47 |
| Msa0064960 | Msa0522280 | 0.824172 | 9.319411e-54 | -8.615850e-47 |
| Msa0064990 | Msa0522280 | 0.809022 | 2.323344e-50 | -8.615850e-47 |
| Msa0090190 | Msa0522280 | 0.817750 | 2.805130e-52 | -8.615850e-47 |
| Msa0110240 | Msa0522280 | 0.846472 | 2.125997e-59 | -8.615850e-47 |
| Msa0120860 | Msa0522280 | 0.818102 | 2.335791e-52 | -8.615850e-47 |
| Msa0121320 | Msa0522280 | 0.815023 | 1.143325e-51 | -8.615850e-47 |
| Msa0128110 | Msa0522280 | -0.806379 | 8.466267e-50 | -8.615850e-47 |
| Msa0128340 | Msa0522280 | 0.825586 | 4.323842e-54 | -8.615850e-47 |
| Msa0128740 | Msa0522280 | 0.833695 | 4.600082e-56 | -8.615850e-47 |
| Msa0137760 | Msa0522280 | 0.834231 | 3.378119e-56 | -8.615850e-47 |
| Msa0147680 | Msa0522280 | 0.819749 | 9.864517e-53 | -8.615850e-47 |
| Msa0154730 | Msa0522280 | 0.801207 | 1.003978e-48 | -8.615850e-47 |
| Msa0155850 | Msa0522280 | 0.807654 | 4.548974e-50 | -8.615850e-47 |
| Msa0156530 | Msa0522280 | 0.808632 | 2.815802e-50 | -8.615850e-47 |
| Msa0166180 | Msa0522280 | 0.811133 | 8.151947e-51 | -8.615850e-47 |
| Msa0177260 | Msa0522280 | 0.804701 | 1.904060e-49 | -8.615850e-47 |
| Msa0177550 | Msa0522280 | 0.807853 | 4.126165e-50 | -8.615850e-47 |
| Msa0182840 | Msa0522280 | 0.808945 | 2.413452e-50 | -8.615850e-47 |
| Msa0183920 | Msa0522280 | 0.802311 | 5.958525e-49 | -8.615850e-47 |
| Msa0186200 | Msa0522280 | 0.969231 | 8.073482e-130 | -8.615850e-47 |
| Msa0189150 | Msa0522280 | -0.816886 | 4.388339e-52 | -8.615850e-47 |
| Msa0190670 | Msa0522280 | 0.803822 | 2.901155e-49 | -8.615850e-47 |
| Msa0210790 | Msa0522280 | 0.811494 | 6.806475e-51 | -8.615850e-47 |
| Msa0210850 | Msa0522280 | 0.807758 | 4.322274e-50 | -8.615850e-47 |
| Msa0238140 | Msa0522280 | 0.808400 | 3.155485e-50 | -8.615850e-47 |
| Msa0375500 | Msa0522280 | 0.802693 | 4.970965e-49 | -8.615850e-47 |
| Msa0375550 | Msa0522280 | 0.805946 | 1.044354e-49 | -8.615850e-47 |
| Msa0430460 | Msa0522280 | 0.801397 | 9.177781e-49 | -8.615850e-47 |
| Msa0432260 | Msa0522280 | -0.802897 | 4.510433e-49 | -8.615850e-47 |
| Msa0444200 | Msa0522280 | 0.806514 | 7.926336e-50 | -8.615850e-47 |
| Msa0444210 | Msa0522280 | 0.810158 | 1.324499e-50 | -8.615850e-47 |
| Msa0266140 | Msa0522280 | -0.801639 | 8.190029e-49 | -8.615850e-47 |
| Msa0274260 | Msa0522280 | 0.822301 | 2.548686e-53 | -8.615850e-47 |
| Msa0318360 | Msa0522280 | 0.805220 | 1.483229e-49 | -8.615850e-47 |
| Msa0327890 | Msa0522280 | 0.800456 | 1.429165e-48 | -8.615850e-47 |
| Msa0328870 | Msa0522280 | 0.800794 | 1.219215e-48 | -8.615850e-47 |
| Msa0489370 | Msa0522280 | 0.800132 | 1.663683e-48 | -8.615850e-47 |
| Msa0514540 | Msa0522280 | 0.808400 | 3.156054e-50 | -8.615850e-47 |
| Msa0522280 | Msa0538050 | -0.807060 | 6.077347e-50 | -8.615850e-47 |
| Msa0522280 | Msa0538450 | 0.813077 | 3.071457e-51 | -8.615850e-47 |
| Msa0522280 | Msa0538520 | 0.817030 | 4.072706e-52 | -8.615850e-47 |
| Msa0522280 | Msa0549920 | 0.800471 | 1.419174e-48 | -8.615850e-47 |
| Msa0522280 | Msa0566460 | 0.813819 | 2.110467e-51 | -8.615850e-47 |
| Msa0522280 | Msa0575950 | 0.825843 | 3.757601e-54 | -8.615850e-47 |
| Msa0522280 | Msa0580210 | 0.805649 | 1.205366e-49 | -8.615850e-47 |
| Msa0522280 | Msa0584970 | 0.819969 | 8.786046e-53 | -8.615850e-47 |
| Msa0522280 | Msa0587180 | 0.802667 | 5.033327e-49 | -8.615850e-47 |
| Msa0522280 | Msa0594320 | 0.800060 | 1.720309e-48 | -8.615850e-47 |
| Msa0522280 | Msa0612880 | -0.801207 | 1.004105e-48 | -8.615850e-47 |
| Msa0522280 | Msa0614020 | -0.807150 | 5.817561e-50 | -8.615850e-47 |
| Msa0522280 | Msa0619690 | -0.803242 | 3.827835e-49 | -8.615850e-47 |
| Msa0522280 | Msa0623980 | 0.802476 | 5.508562e-49 | -8.615850e-47 |
| Msa0522280 | Msa0673940 | 0.804772 | 1.839877e-49 | -8.615850e-47 |
| Msa0522280 | Msa0689840 | 0.807796 | 4.242156e-50 | -8.615850e-47 |
| Msa0522280 | Msa0706130 | -0.806280 | 8.880583e-50 | -8.615850e-47 |
| Msa0522280 | Msa0711240 | 0.813146 | 2.967500e-51 | -8.615850e-47 |
| Msa0522280 | Msa0716700 | 0.818106 | 2.330942e-52 | -8.615850e-47 |
| Msa0522280 | Msa0735340 | 0.807247 | 5.548315e-50 | -8.615850e-47 |
| Msa0522280 | Msa0756670 | -0.824549 | 7.598541e-54 | -8.615850e-47 |
| Msa0522280 | Msa0761830 | 0.817385 | 3.390142e-52 | -8.615850e-47 |
| Msa0522280 | Msa0772420 | 0.810656 | 1.034081e-50 | -8.615850e-47 |
| Msa0522280 | Msa0777210 | 0.800943 | 1.137097e-48 | -8.615850e-47 |
| Msa0522280 | Msa0797980 | -0.824129 | 9.540298e-54 | -8.615850e-47 |
| Msa0522280 | Msa0814350 | 0.811128 | 8.173003e-51 | -8.615850e-47 |
| Msa0522280 | Msa0836060 | -0.819201 | 1.315108e-52 | -8.615850e-47 |
| Msa0522280 | Msa0871420 | 0.803142 | 4.013736e-49 | -8.615850e-47 |
| Msa0522280 | Msa0874750 | 0.801651 | 8.140884e-49 | -8.615850e-47 |
| Msa0522280 | Msa0902340 | 0.804434 | 2.163809e-49 | -8.615850e-47 |
| Msa0522280 | Msa0921860 | 0.816928 | 4.294861e-52 | -8.615850e-47 |
| Msa0522280 | Msa0936630 | 0.815321 | 9.815454e-52 | -8.615850e-47 |
| Msa0522280 | Msa1026490 | 0.807075 | 6.035365e-50 | -8.615850e-47 |
| Msa0522280 | Msa1036590 | 0.801251 | 9.833739e-49 | -8.615850e-47 |
| Msa0522280 | Msa1053340 | 0.823658 | 1.230440e-53 | -8.615850e-47 |
| Msa0522280 | Msa1074560 | 0.824959 | 6.084374e-54 | -8.615850e-47 |
| Msa0522280 | Msa1085560 | 0.822354 | 2.477435e-53 | -8.615850e-47 |
| Msa0522280 | Msa1087380 | 0.820691 | 5.998778e-53 | -8.615850e-47 |
| Msa0522280 | Msa1111650 | 0.805962 | 1.036128e-49 | -8.615850e-47 |
| Msa0522280 | Msa1130770 | 0.800952 | 1.132217e-48 | -8.615850e-47 |
| Msa0522280 | Msa1142590 | 0.811939 | 5.448643e-51 | -8.615850e-47 |
| Msa0522280 | Msa1142600 | 0.804832 | 1.787975e-49 | -8.615850e-47 |
| Msa0522280 | Msa1146980 | 0.824868 | 6.393860e-54 | -8.615850e-47 |
| Msa0522280 | Msa1154310 | 0.803315 | 3.696531e-49 | -8.615850e-47 |
| Msa0522280 | Msa1200360 | 0.807404 | 5.140131e-50 | -8.615850e-47 |
| Msa0522280 | Msa1214960 | 0.818482 | 1.915697e-52 | -8.615850e-47 |
| Msa0522280 | Msa1302630 | 0.807152 | 5.811784e-50 | -8.615850e-47 |
| Msa0522280 | Msa1319030 | 0.806271 | 8.919509e-50 | -8.615850e-47 |
| Msa0522280 | Msa1323030 | 0.801218 | 9.988271e-49 | -8.615850e-47 |
| Msa0522280 | Msa1345390 | 0.808973 | 2.379680e-50 | -8.615850e-47 |
| Msa0522280 | Msa1359520 | 0.800446 | 1.435737e-48 | -8.615850e-47 |
| Msa0522280 | Msa1362520 | 0.805176 | 1.514725e-49 | -8.615850e-47 |
| Msa0522280 | Msa1373560 | 0.812701 | 3.713675e-51 | -8.615850e-47 |
| Msa0522280 | Msa1375640 | 0.803284 | 3.752573e-49 | -8.615850e-47 |
| Msa0522280 | Msa1377460 | 0.807769 | 4.298755e-50 | -8.615850e-47 |
| Msa0522280 | Msa1395050 | 0.800541 | 1.373358e-48 | -8.615850e-47 |
| Msa0522280 | Msa1400290 | -0.802141 | 6.457886e-49 | -8.615850e-47 |
| Msa0522280 | Msa1409060 | 0.811794 | 5.858310e-51 | -8.615850e-47 |
| Msa0522280 | Msa1429810 | 0.818641 | 1.762640e-52 | -8.615850e-47 |
| Msa0522280 | Msa1434700 | 0.826800 | 2.223943e-54 | -8.615850e-47 |
| Msa0522280 | Msa1462780 | 0.807797 | 4.239912e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522280 | MtrunA17_Chr3g0140601 | 95.726 | 117 | 5 | 0 | 1 | 117 | 1 | 117 | 3.75e-78 | 226 |
| Msa0522280 | MtrunA17_Chr1g0146471 | 70.085 | 117 | 33 | 2 | 1 | 117 | 1 | 115 | 7.78e-58 | 174 |
| Msa0522280 | MtrunA17_Chr4g0063331 | 56.790 | 81 | 35 | 0 | 27 | 107 | 21 | 101 | 2.34e-24 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522280 | AT5G25940.1 | 57.955 | 88 | 37 | 0 | 19 | 106 | 16 | 103 | 2.47e-21 | 82.4 |
Find 26 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGCTGACAAAACAATCT+TGG | 0.341283 | 3_4:-75348023 | Msa0522280:CDS |
| TCAGAGACTCTTCTAGCAGC+AGG | 0.453559 | 3_4:+75347981 | None:intergenic |
| TTGCAGTTCGGATGATTCCA+TGG | 0.467990 | 3_4:-75348530 | Msa0522280:CDS |
| AACATCTTCTGCTCTTCTGC+GGG | 0.476450 | 3_4:+75349170 | None:intergenic |
| AGGTGTGCGTGCTGGATTCA+AGG | 0.476456 | 3_4:-75348849 | Msa0522280:CDS |
| GGATTCAAGGCAGCCGGCAT+CGG | 0.492095 | 3_4:-75348836 | Msa0522280:CDS |
| ATTCACAGTTGGTTGCAGTT+CGG | 0.494528 | 3_4:-75348542 | Msa0522280:intron |
| AAACCTCAATTATACTGCTC+AGG | 0.499730 | 3_4:-75348499 | Msa0522280:CDS |
| CGTGCTGGATTCAAGGCAGC+CGG | 0.500054 | 3_4:-75348842 | Msa0522280:CDS |
| CACATGTCCCTCAGTTCTGA+TGG | 0.505127 | 3_4:+75349230 | None:intergenic |
| TTGAGGTTTGCCTTTGCCCA+TGG | 0.506394 | 3_4:+75348513 | None:intergenic |
| CAACATCTTCTGCTCTTCTG+CGG | 0.519948 | 3_4:+75349169 | None:intergenic |
| AGGTCTAGTCAATGTACAGC+TGG | 0.529239 | 3_4:-75349146 | Msa0522280:intron |
| CAGGCGCTTATCATATCTGC+CGG | 0.532856 | 3_4:-75348480 | Msa0522280:intron |
| TATGCAGAAGGTGTGCGTGC+TGG | 0.539033 | 3_4:-75348857 | Msa0522280:intron |
| GCGCCTGAGCAGTATAATTG+AGG | 0.541209 | 3_4:+75348496 | None:intergenic |
| GGCAGCCGGCATCGGATGTG+TGG | 0.545487 | 3_4:-75348828 | Msa0522280:CDS |
| CAGAGACTCTTCTAGCAGCA+GGG | 0.568654 | 3_4:+75347982 | None:intergenic |
| ACTCGCCACACATCCGATGC+CGG | 0.574386 | 3_4:+75348823 | None:intergenic |
| TGCAGTTCGGATGATTCCAT+GGG | 0.575792 | 3_4:-75348529 | Msa0522280:CDS |
| CATCAGAACTGAGGGACATG+TGG | 0.592369 | 3_4:-75349229 | Msa0522280:CDS |
| GGGAATTCCATCAGAACTGA+GGG | 0.594629 | 3_4:-75349237 | Msa0522280:CDS |
| CAGAAGAGCAGAAGATGTTG+AGG | 0.594698 | 3_4:-75349166 | Msa0522280:CDS |
| TCGGATGATTCCATGGGCAA+AGG | 0.603271 | 3_4:-75348523 | Msa0522280:CDS |
| AAGATTACGTACAGTAGGCA+CGG | 0.635926 | 3_4:+75348799 | None:intergenic |
| TGGGAATTCCATCAGAACTG+AGG | 0.659138 | 3_4:-75349238 | Msa0522280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTAAAAATACATATTTTTT+TGG | - | chr3_4:75348470-75348489 | Msa0522280:intron | 10.0% |
| !!! | ACTAAAAATACATATTTTTT+TGG | - | chr3_4:75348470-75348489 | Msa0522280:intron | 10.0% |
| !! | ATGAATAAGAAAATTAAAAC+TGG | + | chr3_4:75348118-75348137 | None:intergenic | 15.0% |
| !!! | AACAAACTTTAAGAAAATTA+TGG | - | chr3_4:75348497-75348516 | Msa0522280:CDS | 15.0% |
| !! | AAAAAAACAGAAATTCTTTA+AGG | + | chr3_4:75348576-75348595 | None:intergenic | 15.0% |
| !! | TTTACTCCTATAATTAAATT+TGG | + | chr3_4:75348846-75348865 | None:intergenic | 15.0% |
| !!! | TGATTAATGAATTTTATCTA+AGG | + | chr3_4:75349015-75349034 | None:intergenic | 15.0% |
| !!! | TTCTAATTTTGATAATATAG+TGG | - | chr3_4:75349116-75349135 | Msa0522280:intron | 15.0% |
| !! | ATGAATAAGAAAATTAAAAC+TGG | + | chr3_4:75348118-75348137 | None:intergenic | 15.0% |
| !!! | AACAAACTTTAAGAAAATTA+TGG | - | chr3_4:75348497-75348516 | Msa0522280:CDS | 15.0% |
| !! | AAAAAAACAGAAATTCTTTA+AGG | + | chr3_4:75348576-75348595 | None:intergenic | 15.0% |
| !! | TTTACTCCTATAATTAAATT+TGG | + | chr3_4:75348846-75348865 | None:intergenic | 15.0% |
| !!! | TGATTAATGAATTTTATCTA+AGG | + | chr3_4:75349015-75349034 | None:intergenic | 15.0% |
| !!! | TTCTAATTTTGATAATATAG+TGG | - | chr3_4:75349116-75349135 | Msa0522280:intron | 15.0% |
| !! | CATATTAAGAAAATGACAAA+CGG | + | chr3_4:75348333-75348352 | None:intergenic | 20.0% |
| !!! | TTTGATAATATAGTGGTTTT+TGG | - | chr3_4:75349123-75349142 | Msa0522280:intron | 20.0% |
| !! | CATATTAAGAAAATGACAAA+CGG | + | chr3_4:75348333-75348352 | None:intergenic | 20.0% |
| !!! | TTTGATAATATAGTGGTTTT+TGG | - | chr3_4:75349123-75349142 | Msa0522280:intron | 20.0% |
| !! | ATTTTCATCAATCAAGTCAT+AGG | - | chr3_4:75348218-75348237 | Msa0522280:intron | 25.0% |
| !! | TCATTTTCTTAATATGCAGA+AGG | - | chr3_4:75348337-75348356 | Msa0522280:intron | 25.0% |
| ! | ATTAAAAGATTACGTACAGT+AGG | + | chr3_4:75348415-75348434 | None:intergenic | 25.0% |
| !! | TACTGTACGTAATCTTTTAA+TGG | - | chr3_4:75348414-75348433 | Msa0522280:intron | 25.0% |
| !!! | TCTTTTAATGGACAAAACTT+AGG | - | chr3_4:75348426-75348445 | Msa0522280:intron | 25.0% |
| ! | TATCTCAAATGTAACAGATA+AGG | + | chr3_4:75348619-75348638 | None:intergenic | 25.0% |
| ! | ATGCCACCAAATTTAATTAT+AGG | - | chr3_4:75348837-75348856 | Msa0522280:CDS | 25.0% |
| ! | ACTCCTATAATTAAATTTGG+TGG | + | chr3_4:75348843-75348862 | None:intergenic | 25.0% |
| !!! | TAGGAGTAAAAGTATCATTT+CGG | - | chr3_4:75348856-75348875 | Msa0522280:intron | 25.0% |
| ! | ATCACTTGAATCTTATTACT+TGG | - | chr3_4:75349031-75349050 | Msa0522280:intron | 25.0% |
| !! | ATTTTCATCAATCAAGTCAT+AGG | - | chr3_4:75348218-75348237 | Msa0522280:intron | 25.0% |
| !! | TCATTTTCTTAATATGCAGA+AGG | - | chr3_4:75348337-75348356 | Msa0522280:intron | 25.0% |
| ! | ATTAAAAGATTACGTACAGT+AGG | + | chr3_4:75348415-75348434 | None:intergenic | 25.0% |
| !! | TACTGTACGTAATCTTTTAA+TGG | - | chr3_4:75348414-75348433 | Msa0522280:intron | 25.0% |
| !!! | TCTTTTAATGGACAAAACTT+AGG | - | chr3_4:75348426-75348445 | Msa0522280:intron | 25.0% |
| ! | TATCTCAAATGTAACAGATA+AGG | + | chr3_4:75348619-75348638 | None:intergenic | 25.0% |
| ! | ATGCCACCAAATTTAATTAT+AGG | - | chr3_4:75348837-75348856 | Msa0522280:CDS | 25.0% |
| ! | ACTCCTATAATTAAATTTGG+TGG | + | chr3_4:75348843-75348862 | None:intergenic | 25.0% |
| !!! | TAGGAGTAAAAGTATCATTT+CGG | - | chr3_4:75348856-75348875 | Msa0522280:intron | 25.0% |
| ! | ATCACTTGAATCTTATTACT+TGG | - | chr3_4:75349031-75349050 | Msa0522280:intron | 25.0% |
| !! | CAGCAAACTTGTGTTTTTAT+TGG | + | chr3_4:75348007-75348026 | None:intergenic | 30.0% |
| GACTTGATTGATGAAAATCT+TGG | + | chr3_4:75348216-75348235 | None:intergenic | 30.0% | |
| TTATGGATTTGAGAAAACCA+TGG | - | chr3_4:75348514-75348533 | Msa0522280:CDS | 30.0% | |
| !! | AGCTTTAGAAAATTCACAGT+TGG | - | chr3_4:75348653-75348672 | Msa0522280:intron | 30.0% |
| !! | CAGCAAACTTGTGTTTTTAT+TGG | + | chr3_4:75348007-75348026 | None:intergenic | 30.0% |
| GACTTGATTGATGAAAATCT+TGG | + | chr3_4:75348216-75348235 | None:intergenic | 30.0% | |
| TTATGGATTTGAGAAAACCA+TGG | - | chr3_4:75348514-75348533 | Msa0522280:CDS | 30.0% | |
| !! | AGCTTTAGAAAATTCACAGT+TGG | - | chr3_4:75348653-75348672 | Msa0522280:intron | 30.0% |
| TCAATCAAGTCATAGGTGAT+AGG | - | chr3_4:75348225-75348244 | Msa0522280:intron | 35.0% | |
| CTTCTTAACTAAGCTATCCA+TGG | + | chr3_4:75348534-75348553 | None:intergenic | 35.0% | |
| AAACCTCAATTATACTGCTC+AGG | - | chr3_4:75348707-75348726 | Msa0522280:intron | 35.0% | |
| !! | AATTTAAGTTGAGATCGCAC+CGG | + | chr3_4:75348748-75348767 | None:intergenic | 35.0% |
| TAGCTAACGATTTGATTCCA+CGG | - | chr3_4:75348907-75348926 | Msa0522280:intron | 35.0% | |
| TCAATCAAGTCATAGGTGAT+AGG | - | chr3_4:75348225-75348244 | Msa0522280:intron | 35.0% | |
| CTTCTTAACTAAGCTATCCA+TGG | + | chr3_4:75348534-75348553 | None:intergenic | 35.0% | |
| AAACCTCAATTATACTGCTC+AGG | - | chr3_4:75348707-75348726 | Msa0522280:intron | 35.0% | |
| !! | AATTTAAGTTGAGATCGCAC+CGG | + | chr3_4:75348748-75348767 | None:intergenic | 35.0% |
| TAGCTAACGATTTGATTCCA+CGG | - | chr3_4:75348907-75348926 | Msa0522280:intron | 35.0% | |
| CATAGGTGATAGGTATAGTG+TGG | - | chr3_4:75348235-75348254 | Msa0522280:intron | 40.0% | |
| AAGATTACGTACAGTAGGCA+CGG | + | chr3_4:75348410-75348429 | None:intergenic | 40.0% | |
| ATTCACAGTTGGTTGCAGTT+CGG | - | chr3_4:75348664-75348683 | Msa0522280:intron | 40.0% | |
| GACTCAACTAATCGAGAGTT+TGG | - | chr3_4:75348938-75348957 | Msa0522280:intron | 40.0% | |
| CAACTAATCGAGAGTTTGGT+TGG | - | chr3_4:75348942-75348961 | Msa0522280:intron | 40.0% | |
| CATAGGTGATAGGTATAGTG+TGG | - | chr3_4:75348235-75348254 | Msa0522280:intron | 40.0% | |
| AAGATTACGTACAGTAGGCA+CGG | + | chr3_4:75348410-75348429 | None:intergenic | 40.0% | |
| ATTCACAGTTGGTTGCAGTT+CGG | - | chr3_4:75348664-75348683 | Msa0522280:intron | 40.0% | |
| GACTCAACTAATCGAGAGTT+TGG | - | chr3_4:75348938-75348957 | Msa0522280:intron | 40.0% | |
| CAACTAATCGAGAGTTTGGT+TGG | - | chr3_4:75348942-75348961 | Msa0522280:intron | 40.0% | |
| TGGGAATTCCATCAGAACTG+AGG | - | chr3_4:75347968-75347987 | Msa0522280:CDS | 45.0% | |
| GGGAATTCCATCAGAACTGA+GGG | - | chr3_4:75347969-75347988 | Msa0522280:CDS | 45.0% | |
| AACATCTTCTGCTCTTCTGC+GGG | + | chr3_4:75348039-75348058 | None:intergenic | 45.0% | |
| CAACATCTTCTGCTCTTCTG+CGG | + | chr3_4:75348040-75348059 | None:intergenic | 45.0% | |
| CAGAAGAGCAGAAGATGTTG+AGG | - | chr3_4:75348040-75348059 | Msa0522280:CDS | 45.0% | |
| AGGTCTAGTCAATGTACAGC+TGG | - | chr3_4:75348060-75348079 | Msa0522280:intron | 45.0% | |
| TTGCAGTTCGGATGATTCCA+TGG | - | chr3_4:75348676-75348695 | Msa0522280:intron | 45.0% | |
| TGCAGTTCGGATGATTCCAT+GGG | - | chr3_4:75348677-75348696 | Msa0522280:intron | 45.0% | |
| CGCTGCTGACAAAACAATCT+TGG | - | chr3_4:75349183-75349202 | Msa0522280:CDS | 45.0% | |
| TGGGAATTCCATCAGAACTG+AGG | - | chr3_4:75347968-75347987 | Msa0522280:CDS | 45.0% | |
| GGGAATTCCATCAGAACTGA+GGG | - | chr3_4:75347969-75347988 | Msa0522280:CDS | 45.0% | |
| AACATCTTCTGCTCTTCTGC+GGG | + | chr3_4:75348039-75348058 | None:intergenic | 45.0% | |
| CAACATCTTCTGCTCTTCTG+CGG | + | chr3_4:75348040-75348059 | None:intergenic | 45.0% | |
| CAGAAGAGCAGAAGATGTTG+AGG | - | chr3_4:75348040-75348059 | Msa0522280:CDS | 45.0% | |
| AGGTCTAGTCAATGTACAGC+TGG | - | chr3_4:75348060-75348079 | Msa0522280:intron | 45.0% | |
| TTGCAGTTCGGATGATTCCA+TGG | - | chr3_4:75348676-75348695 | Msa0522280:intron | 45.0% | |
| TGCAGTTCGGATGATTCCAT+GGG | - | chr3_4:75348677-75348696 | Msa0522280:intron | 45.0% | |
| CGCTGCTGACAAAACAATCT+TGG | - | chr3_4:75349183-75349202 | Msa0522280:CDS | 45.0% | |
| ! | CACATGTCCCTCAGTTCTGA+TGG | + | chr3_4:75347979-75347998 | None:intergenic | 50.0% |
| CATCAGAACTGAGGGACATG+TGG | - | chr3_4:75347977-75347996 | Msa0522280:CDS | 50.0% | |
| TCGGATGATTCCATGGGCAA+AGG | - | chr3_4:75348683-75348702 | Msa0522280:intron | 50.0% | |
| TTGAGGTTTGCCTTTGCCCA+TGG | + | chr3_4:75348696-75348715 | None:intergenic | 50.0% | |
| GCGCCTGAGCAGTATAATTG+AGG | + | chr3_4:75348713-75348732 | None:intergenic | 50.0% | |
| CAGGCGCTTATCATATCTGC+CGG | - | chr3_4:75348726-75348745 | Msa0522280:intron | 50.0% | |
| AGTTGAGTCTGTATCGTCCG+TGG | + | chr3_4:75348927-75348946 | None:intergenic | 50.0% | |
| CAGAGACTCTTCTAGCAGCA+GGG | + | chr3_4:75349227-75349246 | None:intergenic | 50.0% | |
| TCAGAGACTCTTCTAGCAGC+AGG | + | chr3_4:75349228-75349247 | None:intergenic | 50.0% | |
| ! | CACATGTCCCTCAGTTCTGA+TGG | + | chr3_4:75347979-75347998 | None:intergenic | 50.0% |
| CATCAGAACTGAGGGACATG+TGG | - | chr3_4:75347977-75347996 | Msa0522280:CDS | 50.0% | |
| TCGGATGATTCCATGGGCAA+AGG | - | chr3_4:75348683-75348702 | Msa0522280:intron | 50.0% | |
| TTGAGGTTTGCCTTTGCCCA+TGG | + | chr3_4:75348696-75348715 | None:intergenic | 50.0% | |
| GCGCCTGAGCAGTATAATTG+AGG | + | chr3_4:75348713-75348732 | None:intergenic | 50.0% | |
| CAGGCGCTTATCATATCTGC+CGG | - | chr3_4:75348726-75348745 | Msa0522280:intron | 50.0% | |
| AGTTGAGTCTGTATCGTCCG+TGG | + | chr3_4:75348927-75348946 | None:intergenic | 50.0% | |
| CAGAGACTCTTCTAGCAGCA+GGG | + | chr3_4:75349227-75349246 | None:intergenic | 50.0% | |
| TCAGAGACTCTTCTAGCAGC+AGG | + | chr3_4:75349228-75349247 | None:intergenic | 50.0% | |
| ! | TATGCAGAAGGTGTGCGTGC+TGG | - | chr3_4:75348349-75348368 | Msa0522280:intron | 55.0% |
| AGGTGTGCGTGCTGGATTCA+AGG | - | chr3_4:75348357-75348376 | Msa0522280:intron | 55.0% | |
| ! | TATGCAGAAGGTGTGCGTGC+TGG | - | chr3_4:75348349-75348368 | Msa0522280:intron | 55.0% |
| AGGTGTGCGTGCTGGATTCA+AGG | - | chr3_4:75348357-75348376 | Msa0522280:intron | 55.0% | |
| CGTGCTGGATTCAAGGCAGC+CGG | - | chr3_4:75348364-75348383 | Msa0522280:intron | 60.0% | |
| GGATTCAAGGCAGCCGGCAT+CGG | - | chr3_4:75348370-75348389 | Msa0522280:intron | 60.0% | |
| ACTCGCCACACATCCGATGC+CGG | + | chr3_4:75348386-75348405 | None:intergenic | 60.0% | |
| CGTGCTGGATTCAAGGCAGC+CGG | - | chr3_4:75348364-75348383 | Msa0522280:intron | 60.0% | |
| GGATTCAAGGCAGCCGGCAT+CGG | - | chr3_4:75348370-75348389 | Msa0522280:intron | 60.0% | |
| ACTCGCCACACATCCGATGC+CGG | + | chr3_4:75348386-75348405 | None:intergenic | 60.0% | |
| ! | GGCAGCCGGCATCGGATGTG+TGG | - | chr3_4:75348378-75348397 | Msa0522280:intron | 70.0% |
| ! | GGCAGCCGGCATCGGATGTG+TGG | - | chr3_4:75348378-75348397 | Msa0522280:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 75347967 | 75349261 | 75347967 | ID=Msa0522280;Name=Msa0522280 |
| chr3_4 | mRNA | 75347967 | 75349261 | 75347967 | ID=Msa0522280-mRNA-1;Parent=Msa0522280;Name=Msa0522280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.25|1|1|1|4|0|117 |
| chr3_4 | exon | 75349147 | 75349261 | 75349147 | ID=Msa0522280-mRNA-1:exon:21574;Parent=Msa0522280-mRNA-1 |
| chr3_4 | exon | 75348811 | 75348872 | 75348811 | ID=Msa0522280-mRNA-1:exon:21573;Parent=Msa0522280-mRNA-1 |
| chr3_4 | exon | 75348481 | 75348556 | 75348481 | ID=Msa0522280-mRNA-1:exon:21572;Parent=Msa0522280-mRNA-1 |
| chr3_4 | exon | 75347967 | 75348067 | 75347967 | ID=Msa0522280-mRNA-1:exon:21571;Parent=Msa0522280-mRNA-1 |
| chr3_4 | CDS | 75349147 | 75349261 | 75349147 | ID=Msa0522280-mRNA-1:cds;Parent=Msa0522280-mRNA-1 |
| chr3_4 | CDS | 75348811 | 75348872 | 75348811 | ID=Msa0522280-mRNA-1:cds;Parent=Msa0522280-mRNA-1 |
| chr3_4 | CDS | 75348481 | 75348556 | 75348481 | ID=Msa0522280-mRNA-1:cds;Parent=Msa0522280-mRNA-1 |
| chr3_4 | CDS | 75347967 | 75348067 | 75347967 | ID=Msa0522280-mRNA-1:cds;Parent=Msa0522280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
