AlfalfaGEDB | Msa0623420

M. sativa cultivar zhongmu-4 / Msa0623420

KEGG: K14638
GO: GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039
PFAM: PF00854.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623420	XP_003602970.1	97.629	464	11	0	1	464	1	464	0.0	937

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623420	sp\|Q8VYE4\|PTR12_ARATH	44.469	452	239	5	16	463	27	470	5.92e-122	370

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006080	Msa0623420	0.802412	5.680877e-49	-8.615850e-47
Msa0013270	Msa0623420	0.815929	7.186783e-52	-8.615850e-47
Msa0024650	Msa0623420	0.804767	1.844185e-49	-8.615850e-47
Msa0025570	Msa0623420	0.801964	7.023994e-49	-8.615850e-47
Msa0045810	Msa0623420	0.811683	6.192762e-51	-8.615850e-47
Msa0073110	Msa0623420	0.823414	1.403014e-53	-8.615850e-47
Msa0087900	Msa0623420	0.812977	3.231164e-51	-8.615850e-47
Msa0120450	Msa0623420	0.812189	4.805738e-51	-8.615850e-47
Msa0606600	Msa0623420	0.831442	1.665716e-55	-8.615850e-47
Msa0618680	Msa0623420	0.828359	9.395979e-55	-8.615850e-47
Msa0618700	Msa0623420	0.853221	2.758188e-61	-8.615850e-47
Msa0623420	Msa0647300	0.835021	2.138319e-56	-8.615850e-47
Msa0623420	Msa0682110	0.805931	1.051827e-49	-8.615850e-47
Msa0623420	Msa0686830	0.842880	1.973916e-58	-8.615850e-47
Msa0623420	Msa0689840	0.808626	2.823678e-50	-8.615850e-47
Msa0623420	Msa0698280	0.822194	2.698207e-53	-8.615850e-47
Msa0623420	Msa0699170	0.811848	5.702687e-51	-8.615850e-47
Msa0623420	Msa0708680	0.820945	5.246015e-53	-8.615850e-47
Msa0623420	Msa0734080	0.807485	4.940428e-50	-8.615850e-47
Msa0623420	Msa0761950	0.811993	5.301064e-51	-8.615850e-47
Msa0623420	Msa0773030	0.804208	2.412037e-49	-8.615850e-47
Msa0623420	Msa0782590	0.803210	3.886567e-49	-8.615850e-47
Msa0623420	Msa0798840	0.820810	5.633767e-53	-8.615850e-47
Msa0623420	Msa0803880	0.806146	9.477936e-50	-8.615850e-47
Msa0623420	Msa0806930	0.809213	2.114129e-50	-8.615850e-47
Msa0623420	Msa0812720	0.824920	6.213483e-54	-8.615850e-47
Msa0623420	Msa0831890	0.806886	6.614979e-50	-8.615850e-47
Msa0623420	Msa0841930	0.801280	9.698767e-49	-8.615850e-47
Msa0623420	Msa0876600	0.802368	5.799504e-49	-8.615850e-47
Msa0623420	Msa0896920	0.810232	1.276972e-50	-8.615850e-47
Msa0623420	Msa0906680	0.802908	4.486936e-49	-8.615850e-47
Msa0623420	Msa0931680	0.803556	3.295447e-49	-8.615850e-47
Msa0623420	Msa0940780	0.821693	3.524787e-53	-8.615850e-47
Msa0623420	Msa0967780	0.800192	1.617506e-48	-8.615850e-47
Msa0623420	Msa0975950	0.804576	2.021899e-49	-8.615850e-47
Msa0623420	Msa1029860	0.811286	7.553054e-51	-8.615850e-47
Msa0623420	Msa1035050	0.804170	2.456843e-49	-8.615850e-47
Msa0623420	Msa1049400	0.807725	4.392187e-50	-8.615850e-47
Msa0623420	Msa1063210	0.813531	2.441928e-51	-8.615850e-47
Msa0623420	Msa1066150	0.808293	3.326108e-50	-8.615850e-47
Msa0623420	Msa1075090	0.801704	7.940956e-49	-8.615850e-47
Msa0623420	Msa1100330	0.818988	1.470148e-52	-8.615850e-47
Msa0623420	Msa1106680	0.800354	1.499331e-48	-8.615850e-47
Msa0623420	Msa1108560	0.806544	7.812319e-50	-8.615850e-47
Msa0623420	Msa1115980	0.800646	1.306936e-48	-8.615850e-47
Msa0623420	Msa1136630	0.824329	8.561356e-54	-8.615850e-47
Msa0623420	Msa1143250	0.815920	7.218956e-52	-8.615850e-47
Msa0623420	Msa1147010	0.818189	2.232419e-52	-8.615850e-47
Msa0623420	Msa1162430	0.811515	6.736715e-51	-8.615850e-47
Msa0623420	Msa1165460	0.819973	8.764846e-53	-8.615850e-47
Msa0623420	Msa1167960	0.804862	1.762024e-49	-8.615850e-47
Msa0623420	Msa1170340	0.821924	3.116736e-53	-8.615850e-47
Msa0623420	Msa1191350	0.819906	9.081038e-53	-8.615850e-47
Msa0623420	Msa1223960	0.815272	1.006688e-51	-8.615850e-47
Msa0623420	Msa1225890	0.809890	1.512790e-50	-8.615850e-47
Msa0623420	Msa1226210	0.803802	2.929678e-49	-8.615850e-47
Msa0623420	Msa1238250	0.818225	2.190788e-52	-8.615850e-47
Msa0623420	Msa1263110	0.822724	2.032784e-53	-8.615850e-47
Msa0623420	Msa1269500	0.868892	4.657993e-66	-8.615850e-47
Msa0623420	Msa1281780	0.801148	1.032151e-48	-8.615850e-47
Msa0623420	Msa1284020	0.827180	1.804069e-54	-8.615850e-47
Msa0623420	Msa1319030	0.822888	1.861783e-53	-8.615850e-47
Msa0623420	Msa1319190	0.823287	1.502315e-53	-8.615850e-47
Msa0623420	Msa1322500	0.814637	1.391898e-51	-8.615850e-47
Msa0623420	Msa1357840	0.819423	1.170821e-52	-8.615850e-47
Msa0623420	Msa1361980	0.801393	9.196314e-49	-8.615850e-47
Msa0623420	Msa1368420	0.813614	2.341343e-51	-8.615850e-47
Msa0623420	Msa1376880	0.807632	4.596708e-50	-8.615850e-47
Msa0623420	Msa1383220	0.819928	8.974008e-53	-8.615850e-47
Msa0623420	Msa1384130	0.812607	3.893604e-51	-8.615850e-47
Msa0623420	Msa1407810	0.818272	2.137568e-52	-8.615850e-47
Msa0623420	Msa1433360	0.809494	1.840832e-50	-8.615850e-47
Msa0623420	Msa1437780	0.816721	4.777785e-52	-8.615850e-47
Msa0623420	Msa1455360	0.823084	1.675578e-53	-8.615850e-47
Msa0121320	Msa0623420	0.809188	2.140333e-50	-8.615850e-47
Msa0132250	Msa0623420	0.804245	2.369837e-49	-8.615850e-47
Msa0141820	Msa0623420	0.965838	3.973819e-125	-8.615850e-47
Msa0163690	Msa0623420	0.806841	6.762311e-50	-8.615850e-47
Msa0166030	Msa0623420	0.806705	7.226067e-50	-8.615850e-47
Msa0166180	Msa0623420	0.806024	1.005471e-49	-8.615850e-47
Msa0224870	Msa0623420	0.810795	9.652610e-51	-8.615850e-47
Msa0234150	Msa0623420	0.806415	8.316479e-50	-8.615850e-47
Msa0238110	Msa0623420	0.805225	1.479566e-49	-8.615850e-47
Msa0374470	Msa0623420	0.806373	8.489577e-50	-8.615850e-47
Msa0374600	Msa0623420	0.806561	7.747987e-50	-8.615850e-47
Msa0380110	Msa0623420	0.930428	1.661710e-93	-8.615850e-47
Msa0386910	Msa0623420	0.810491	1.122822e-50	-8.615850e-47
Msa0418230	Msa0623420	0.819586	1.074474e-52	-8.615850e-47
Msa0429450	Msa0623420	0.979727	1.316217e-148	-8.615850e-47
Msa0429600	Msa0623420	0.963219	8.108837e-122	-8.615850e-47
Msa0457070	Msa0623420	-0.800795	1.218928e-48	-8.615850e-47
Msa0464620	Msa0623420	0.812070	5.100660e-51	-8.615850e-47
Msa0248320	Msa0623420	0.817988	2.477947e-52	-8.615850e-47
Msa0287480	Msa0623420	0.804369	2.232914e-49	-8.615850e-47
Msa0298000	Msa0623420	0.806200	9.230930e-50	-8.615850e-47
Msa0303900	Msa0623420	0.817664	2.932967e-52	-8.615850e-47
Msa0318490	Msa0623420	0.818979	1.477365e-52	-8.615850e-47
Msa0333770	Msa0623420	0.847715	9.701243e-60	-8.615850e-47
Msa0354550	Msa0623420	0.810712	1.005901e-50	-8.615850e-47
Msa0354670	Msa0623420	0.803010	4.275680e-49	-8.615850e-47
Msa0358470	Msa0623420	0.815897	7.304110e-52	-8.615850e-47
Msa0490100	Msa0623420	0.801759	7.738037e-49	-8.615850e-47
Msa0491780	Msa0623420	0.812366	4.396425e-51	-8.615850e-47
Msa0496060	Msa0623420	0.802949	4.400462e-49	-8.615850e-47
Msa0496070	Msa0623420	0.820157	7.957269e-53	-8.615850e-47
Msa0496380	Msa0623420	0.806160	9.411588e-50	-8.615850e-47
Msa0501080	Msa0623420	0.905291	5.011540e-80	-8.615850e-47
Msa0502940	Msa0623420	0.802222	6.214158e-49	-8.615850e-47
Msa0510050	Msa0623420	0.805177	1.513638e-49	-8.615850e-47
Msa0531050	Msa0623420	0.806646	7.435076e-50	-8.615850e-47
Msa0540640	Msa0623420	0.802061	6.707675e-49	-8.615850e-47
Msa0561110	Msa0623420	0.802367	5.801049e-49	-8.615850e-47
Msa0565700	Msa0623420	0.814162	1.772587e-51	-8.615850e-47
Msa0567330	Msa0623420	0.823717	1.191954e-53	-8.615850e-47
Msa0567570	Msa0623420	0.809355	1.971636e-50	-8.615850e-47
Msa0576320	Msa0623420	0.821640	3.626669e-53	-8.615850e-47
Msa0583390	Msa0623420	0.812194	4.793873e-51	-8.615850e-47
Msa0591490	Msa0623420	0.803454	3.459909e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623420	MtrunA17_Chr3g0133341	97.629	464	11	0	1	464	1	464	0.0	937
Msa0623420	MtrunA17_Chr1g0193391	49.130	460	212	6	10	464	11	453	8.74e-159	462
Msa0623420	MtrunA17_Chr7g0271221	49.669	453	210	4	14	464	17	453	4.06e-154	450
Msa0623420	MtrunA17_Chr2g0284701	47.084	463	226	7	16	461	34	494	3.54e-147	433
Msa0623420	MtrunA17_Chr4g0069581	49.195	435	205	3	32	464	4	424	2.72e-140	414
Msa0623420	MtrunA17_Chr8g0379971	42.857	490	240	9	13	466	19	504	2.43e-136	405
Msa0623420	MtrunA17_Chr8g0379991	43.312	471	221	7	35	461	1	469	4.85e-124	373
Msa0623420	MtrunA17_Chr5g0415961	40.213	470	256	6	10	463	20	480	1.32e-116	354
Msa0623420	MtrunA17_Chr8g0362711	41.754	479	246	7	9	466	19	485	7.99e-115	349
Msa0623420	MtrunA17_Chr8g0375311	37.174	460	275	3	10	461	36	489	2.31e-108	333
Msa0623420	MtrunA17_Chr8g0375291	38.696	460	268	3	10	461	36	489	1.16e-107	331
Msa0623420	MtrunA17_Chr7g0261811	39.294	453	269	4	10	459	23	472	1.30e-106	328
Msa0623420	MtrunA17_Chr8g0375341	37.716	464	273	4	10	464	36	492	1.57e-106	328
Msa0623420	MtrunA17_Chr7g0261791	38.190	453	275	4	10	459	25	475	1.69e-106	328
Msa0623420	MtrunA17_Chr8g0375321	37.609	460	273	3	10	461	33	486	2.22e-106	327
Msa0623420	MtrunA17_Chr7g0261881	39.073	453	270	4	10	459	23	472	1.15e-105	326
Msa0623420	MtrunA17_Chr8g0375351	37.716	464	273	4	10	464	36	492	1.96e-105	325
Msa0623420	MtrunA17_Chr2g0276751	39.168	457	251	7	10	461	34	468	2.48e-105	325
Msa0623420	MtrunA17_Chr5g0422881	39.427	454	262	5	14	459	20	468	2.64e-105	325
Msa0623420	MtrunA17_Chr8g0375331	37.365	463	276	3	10	464	20	476	1.00e-104	323
Msa0623420	MtrunA17_Chr1g0187241	37.199	457	281	2	6	459	18	471	5.36e-103	319
Msa0623420	MtrunA17_Chr4g0005901	37.391	460	271	6	10	461	28	478	1.60e-98	307
Msa0623420	MtrunA17_Chr7g0261851	38.158	456	278	3	6	459	20	473	6.76e-98	306
Msa0623420	MtrunA17_Chr7g0241741	36.797	462	271	8	10	461	18	468	1.04e-97	305
Msa0623420	MtrunA17_Chr7g0261771	36.062	452	285	3	10	459	27	476	2.54e-97	305
Msa0623420	MtrunA17_Chr5g0399061	35.714	462	278	6	11	459	24	479	4.70e-97	303
Msa0623420	MtrunA17_Chr3g0142101	36.703	455	266	8	14	461	35	474	9.35e-97	303
Msa0623420	MtrunA17_Chr5g0399071	36.659	461	277	4	10	459	21	477	1.07e-95	300
Msa0623420	MtrunA17_Chr8g0375361	36.383	459	274	4	13	461	38	488	5.75e-95	298
Msa0623420	MtrunA17_Chr4g0056431	36.069	463	280	5	10	459	21	480	3.16e-94	296
Msa0623420	MtrunA17_Chr7g0261751	34.958	472	267	4	10	443	27	496	2.23e-92	290
Msa0623420	MtrunA17_Chr3g0104011	34.273	461	286	6	10	461	18	470	6.19e-92	290
Msa0623420	MtrunA17_Chr1g0166791	32.967	455	299	3	10	461	20	471	3.41e-91	288
Msa0623420	MtrunA17_Chr7g0214731	36.559	465	279	9	16	466	63	525	4.63e-91	289
Msa0623420	MtrunA17_Chr3g0142091	35.903	454	272	7	14	461	26	466	8.99e-91	287
Msa0623420	MtrunA17_Chr7g0255621	34.979	466	287	6	6	460	12	472	8.68e-90	285
Msa0623420	MtrunA17_Chr1g0166711	35.841	452	285	3	10	459	21	469	1.57e-88	281
Msa0623420	MtrunA17_Chr7g0255611	34.698	464	285	8	9	461	26	482	3.40e-88	281
Msa0623420	MtrunA17_Chr1g0166771	35.000	440	270	6	27	461	3	431	3.58e-88	279
Msa0623420	MtrunA17_Chr7g0240381	35.242	454	270	6	18	464	33	469	5.16e-88	280
Msa0623420	MtrunA17_Chr4g0008651	35.463	454	275	7	18	464	38	480	1.50e-87	279
Msa0623420	MtrunA17_Chr3g0114501	36.325	468	278	8	10	466	18	476	3.42e-87	278
Msa0623420	MtrunA17_Chr1g0166741	33.407	452	288	4	13	461	26	467	8.46e-87	277
Msa0623420	MtrunA17_Chr4g0063591	36.443	461	266	7	11	459	19	464	8.27e-85	271
Msa0623420	MtrunA17_Chr7g0261661	40.947	359	206	4	104	459	3	358	4.96e-84	267
Msa0623420	MtrunA17_Chr7g0255601	34.354	457	284	6	16	461	29	480	1.47e-83	269
Msa0623420	MtrunA17_Chr3g0112611	34.444	450	277	6	18	459	36	475	4.86e-81	262
Msa0623420	MtrunA17_Chr4g0014871	33.333	462	277	8	10	464	26	463	4.64e-80	258
Msa0623420	MtrunA17_Chr8g0353031	35.345	464	253	8	16	459	20	456	3.12e-79	256
Msa0623420	MtrunA17_Chr7g0217461	32.688	465	293	5	10	461	20	477	4.74e-79	256
Msa0623420	MtrunA17_Chr5g0415791	34.829	468	286	7	14	466	29	492	2.07e-78	255
Msa0623420	MtrunA17_Chr3g0112671	33.630	449	274	5	22	464	41	471	3.55e-78	254
Msa0623420	MtrunA17_Chr4g0014801	34.490	461	272	8	10	464	25	461	6.23e-78	253
Msa0623420	MtrunA17_Chr4g0014791	34.423	459	273	8	10	464	25	459	5.78e-77	250
Msa0623420	MtrunA17_Chr4g0014781	32.898	459	282	6	10	464	25	461	5.99e-77	250
Msa0623420	MtrunA17_Chr3g0077151	33.766	462	267	7	10	464	24	453	7.10e-77	250
Msa0623420	MtrunA17_Chr4g0014841	33.115	459	279	8	10	464	25	459	2.57e-74	243
Msa0623420	MtrunA17_Chr1g0166731	36.842	361	223	3	101	459	9	366	9.44e-73	237
Msa0623420	MtrunA17_Chr4g0054891	31.102	463	298	5	10	461	106	558	1.41e-72	241
Msa0623420	MtrunA17_Chr7g0261731	36.061	330	208	2	10	338	27	354	8.97e-72	231
Msa0623420	MtrunA17_Chr5g0400371	28.942	463	313	5	10	461	108	565	1.02e-71	239
Msa0623420	MtrunA17_Chr4g0011471	32.812	448	280	5	24	459	26	464	1.46e-71	236
Msa0623420	MtrunA17_Chr4g0011041	29.957	464	301	6	10	459	32	485	1.04e-70	234
Msa0623420	MtrunA17_Chr5g0439381	31.947	457	289	4	10	459	24	465	1.83e-70	234
Msa0623420	MtrunA17_Chr1g0213711	29.694	458	298	8	14	461	21	464	8.47e-70	232
Msa0623420	MtrunA17_Chr7g0218851	30.065	459	299	9	13	461	45	491	1.94e-68	229
Msa0623420	MtrunA17_Chr7g0214461	29.670	455	300	8	15	461	79	521	1.23e-67	228
Msa0623420	MtrunA17_Chr7g0240271	29.512	471	303	7	14	464	24	485	3.34e-66	223
Msa0623420	MtrunA17_Chr4g0059981	31.635	471	286	10	11	459	30	486	1.10e-65	222
Msa0623420	MtrunA17_Chr4g0059991	30.417	480	291	11	12	464	20	483	1.37e-64	219
Msa0623420	MtrunA17_Chr4g0014861	35.928	334	202	5	136	464	12	338	1.40e-64	214
Msa0623420	MtrunA17_Chr1g0147631	31.887	461	286	8	14	459	25	472	2.57e-64	218
Msa0623420	MtrunA17_Chr4g0059971	30.361	471	294	6	10	459	32	489	4.48e-64	217
Msa0623420	MtrunA17_Chr7g0240281	30.233	473	299	9	14	464	24	487	1.05e-63	216
Msa0623420	MtrunA17_Chr2g0331511	32.128	470	293	11	7	462	16	473	7.38e-63	215
Msa0623420	MtrunA17_Chr3g0082631	35.119	336	202	4	140	459	30	365	1.19e-62	210
Msa0623420	MtrunA17_Chr4g0060001	32.604	457	280	11	15	456	30	473	1.19e-62	214
Msa0623420	MtrunA17_Chr2g0331481	31.303	476	299	9	5	464	16	479	6.52e-62	212
Msa0623420	MtrunA17_Chr8g0390331	29.783	460	300	7	12	459	13	461	8.46e-61	208
Msa0623420	MtrunA17_Chr2g0331521	30.735	449	287	10	14	448	22	460	9.06e-61	208
Msa0623420	MtrunA17_Chr8g0362781	27.826	460	315	5	7	452	23	479	7.26e-60	206
Msa0623420	MtrunA17_Chr4g0003761	30.426	470	300	11	9	464	26	482	1.17e-59	206
Msa0623420	MtrunA17_Chr2g0331471	31.646	474	294	12	7	464	83	542	7.23e-59	205
Msa0623420	MtrunA17_Chr3g0142111	36.111	288	174	4	14	298	46	326	8.67e-56	189
Msa0623420	MtrunA17_Chr1g0177591	31.158	475	286	11	2	464	32	477	1.14e-55	194
Msa0623420	MtrunA17_Chr7g0240151	31.579	380	231	7	105	464	4	374	2.24e-55	191
Msa0623420	MtrunA17_Chr7g0235521	31.579	380	231	7	105	464	4	374	2.75e-55	191
Msa0623420	MtrunA17_Chr7g0240211	31.579	380	231	7	105	464	4	374	5.94e-55	190
Msa0623420	MtrunA17_Chr7g0240181	31.579	380	231	7	105	464	4	374	7.79e-55	190
Msa0623420	MtrunA17_Chr7g0240131	31.316	380	232	7	105	464	4	374	2.07e-54	189
Msa0623420	MtrunA17_Chr8g0362801	33.242	364	227	8	113	464	12	371	4.32e-54	188
Msa0623420	MtrunA17_Chr1g0157611	30.112	445	284	11	18	448	20	451	4.66e-54	190
Msa0623420	MtrunA17_Chr1g0157601	28.442	443	294	9	18	448	19	450	8.95e-53	186
Msa0623420	MtrunA17_Chr4g0060071	51.613	155	75	0	309	463	52	206	9.16e-52	177
Msa0623420	MtrunA17_Chr7g0234151	32.692	364	208	8	101	463	3	330	2.79e-50	176
Msa0623420	MtrunA17_Chr2g0325951	27.564	468	293	12	17	462	18	461	2.61e-49	176
Msa0623420	MtrunA17_Chr7g0234381	32.418	364	209	8	101	463	3	330	5.09e-49	173
Msa0623420	MtrunA17_Chr2g0325961	28.085	470	291	12	17	463	18	463	9.10e-49	175
Msa0623420	MtrunA17_Chr2g0326211	27.601	471	292	13	14	463	20	462	9.23e-49	175
Msa0623420	MtrunA17_Chr7g0234181	31.389	360	212	6	104	463	1	325	5.32e-48	170
Msa0623420	MtrunA17_Chr2g0331461	29.474	475	309	9	5	464	16	479	1.54e-47	173
Msa0623420	MtrunA17_Chr1g0157621	30.233	387	246	12	74	448	40	414	1.51e-46	169
Msa0623420	MtrunA17_Chr5g0415841	27.624	362	250	4	104	456	3	361	1.56e-43	159
Msa0623420	MtrunA17_Chr1g0177611	32.647	340	203	8	137	464	23	348	9.25e-42	154
Msa0623420	MtrunA17_Chr6g0451841	26.923	468	287	12	15	460	8	442	3.39e-38	145
Msa0623420	MtrunA17_Chr1g0177631	31.765	340	206	8	137	464	23	348	1.60e-37	142
Msa0623420	MtrunA17_Chr4g0060061	44.715	123	68	0	128	250	6	128	3.09e-33	122
Msa0623420	MtrunA17_Chr7g0261831	43.333	150	80	3	247	392	1	149	2.89e-31	119
Msa0623420	MtrunA17_Chr3g0142121	38.506	174	95	4	292	461	11	176	7.85e-31	120
Msa0623420	MtrunA17_Chr3g0112631	37.363	182	105	4	291	464	3	183	4.47e-28	113
Msa0623420	MtrunA17_Chr3g0112651	34.731	167	108	1	126	292	38	203	2.26e-27	108
Msa0623420	MtrunA17_Chr1g0147591	30.693	202	123	3	143	332	5	201	2.22e-24	100
Msa0623420	MtrunA17_Chr4g0060051	40.659	91	54	0	10	100	18	108	2.61e-17	78.2
Msa0623420	MtrunA17_Chr7g0261721	41.176	102	60	0	358	459	5	106	4.61e-16	77.4
Msa0623420	MtrunA17_Chr7g0261671	30.769	91	63	0	10	100	28	118	1.94e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0623420	AT1G27040.2	44.469	452	239	5	16	463	23	466	4.21e-123	370
Msa0623420	AT1G27040.1	44.469	452	239	5	16	463	27	470	6.02e-123	370
Msa0623420	AT1G27040.3	44.091	440	234	5	28	463	7	438	1.40e-119	360
Msa0623420	AT1G69850.1	42.495	473	243	4	13	463	22	487	5.95e-117	355
Msa0623420	AT2G02040.1	37.149	463	277	3	10	464	35	491	2.65e-105	325
Msa0623420	AT1G59740.1	39.083	458	263	5	10	461	35	482	8.95e-104	321
Msa0623420	AT1G62200.1	37.716	464	268	5	10	464	46	497	2.46e-103	320
Msa0623420	AT5G62730.1	37.931	464	260	5	9	463	49	493	6.66e-100	311
Msa0623420	AT1G62200.2	35.772	492	268	5	10	464	46	526	4.43e-99	310
Msa0623420	AT1G62200.3	35.772	492	268	5	10	464	60	540	5.82e-99	310
Msa0623420	AT1G33440.1	40.343	466	254	8	3	461	25	473	9.61e-99	308
Msa0623420	AT5G62730.2	38.137	451	251	5	22	463	3	434	1.82e-97	303
Msa0623420	AT5G01180.2	36.207	464	278	6	10	464	19	473	3.67e-97	303
Msa0623420	AT5G01180.3	36.207	464	278	6	10	464	19	473	3.67e-97	303
Msa0623420	AT5G01180.1	36.207	464	278	6	10	464	19	473	3.67e-97	303
Msa0623420	AT3G54140.1	34.914	464	285	6	10	464	18	473	4.64e-96	301
Msa0623420	AT3G54140.2	34.914	464	285	6	10	464	18	473	4.64e-96	301
Msa0623420	AT1G68570.1	39.216	459	263	5	12	459	19	472	2.39e-95	300
Msa0623420	AT2G02020.1	35.165	455	260	3	10	464	36	455	5.82e-94	295
Msa0623420	AT5G46050.1	36.947	452	276	6	13	459	23	470	7.79e-94	295
Msa0623420	AT1G68570.2	39.503	443	252	5	28	459	5	442	6.00e-93	293
Msa0623420	AT1G12110.1	36.501	463	278	4	10	461	21	478	1.31e-92	292
Msa0623420	AT3G25280.1	37.194	449	245	9	16	463	21	433	3.68e-92	289
Msa0623420	AT5G46040.1	35.841	452	283	5	12	459	22	470	2.02e-91	289
Msa0623420	AT3G25260.1	37.969	453	244	10	10	461	15	431	2.78e-91	287
Msa0623420	AT2G26690.1	37.961	461	260	6	10	459	18	463	1.14e-90	287
Msa0623420	AT2G26690.2	38.600	443	246	6	28	459	3	430	1.98e-88	280
Msa0623420	AT2G37900.1	35.394	469	275	8	6	464	26	476	2.18e-87	278
Msa0623420	AT2G26690.3	39.302	430	235	6	41	459	4	418	2.42e-87	277
Msa0623420	AT5G13400.1	35.193	466	284	7	16	466	64	526	1.64e-85	275
Msa0623420	AT3G53960.1	33.693	463	283	8	13	464	34	483	7.99e-81	262
Msa0623420	AT2G40460.1	34.267	464	287	8	10	466	18	470	1.25e-80	261
Msa0623420	AT3G54450.1	33.548	465	274	8	14	464	10	453	2.61e-80	259
Msa0623420	AT1G69870.1	34.255	470	292	6	6	464	41	504	7.80e-80	260
Msa0623420	AT2G37900.2	36.296	405	232	7	68	464	11	397	1.66e-78	253
Msa0623420	AT5G46050.2	38.333	360	214	5	104	459	3	358	6.14e-78	251
Msa0623420	AT3G21670.1	34.348	460	277	4	10	459	23	467	1.03e-77	253
Msa0623420	AT1G22570.1	33.758	471	273	9	11	464	25	473	2.59e-77	252
Msa0623420	AT1G72140.1	33.619	467	266	9	10	464	28	462	1.39e-74	244
Msa0623420	AT1G22570.2	33.700	454	262	9	28	464	5	436	1.28e-73	241
Msa0623420	AT1G22550.1	32.409	469	278	7	11	464	25	469	2.57e-72	239
Msa0623420	AT1G32450.1	30.472	466	305	6	10	461	31	491	6.88e-72	239
Msa0623420	AT1G22540.1	33.333	459	282	8	10	464	24	462	2.92e-71	236
Msa0623420	AT1G72120.1	33.040	454	275	6	18	464	31	462	3.11e-71	236
Msa0623420	AT1G72125.1	32.026	459	286	8	14	464	26	466	2.31e-70	233
Msa0623420	AT4G21680.1	30.538	465	304	5	10	461	22	480	4.42e-69	231
Msa0623420	AT5G62680.1	31.423	471	300	7	5	459	34	497	8.55e-67	225
Msa0623420	AT1G72130.1	32.450	453	264	8	18	464	27	443	1.09e-66	223
Msa0623420	AT1G27080.1	30.169	474	305	8	1	464	1	458	7.02e-63	214
Msa0623420	AT5G19640.1	29.646	452	288	8	18	461	61	490	8.88e-63	214
Msa0623420	AT3G16180.1	29.915	468	305	8	10	461	16	476	1.63e-62	213
Msa0623420	AT2G02020.2	29.847	459	258	7	10	464	36	434	5.43e-61	207
Msa0623420	AT3G47960.1	30.454	463	299	7	14	459	57	513	1.30e-59	206
Msa0623420	AT1G18880.1	29.935	461	296	9	19	461	22	473	2.02e-59	205
Msa0623420	AT3G45660.1	29.935	461	288	11	15	463	20	457	5.22e-59	203
Msa0623420	AT3G45660.3	29.935	461	288	11	15	463	20	457	5.22e-59	203
Msa0623420	AT3G45660.2	29.935	461	288	11	15	463	41	478	6.93e-59	203
Msa0623420	AT3G45690.1	30.820	451	280	13	5	448	8	433	8.52e-59	202
Msa0623420	AT3G45720.1	30.876	434	267	8	42	464	45	456	9.86e-59	202
Msa0623420	AT3G45650.1	28.908	467	303	6	6	463	12	458	1.23e-58	202
Msa0623420	AT5G28470.2	28.788	462	308	7	6	456	7	458	3.99e-58	201
Msa0623420	AT1G52190.1	28.817	465	307	9	14	461	19	476	2.09e-57	200
Msa0623420	AT3G45650.2	29.204	452	291	6	6	448	12	443	2.17e-57	199
Msa0623420	AT1G27080.2	31.863	408	254	7	67	464	23	416	1.84e-56	196
Msa0623420	AT3G45710.1	30.529	416	257	10	59	462	63	458	4.36e-56	196
Msa0623420	AT3G45700.1	31.336	434	260	12	45	462	35	446	3.05e-55	193
Msa0623420	AT5G28470.1	28.571	462	307	8	6	456	7	456	3.13e-55	193
Msa0623420	AT1G69860.1	30.067	449	296	5	14	456	16	452	1.36e-54	191
Msa0623420	AT3G45680.1	31.265	419	254	10	42	448	46	442	4.83e-53	187
Msa0623420	AT1G72130.2	33.718	347	200	7	124	464	3	325	7.27e-52	181
Msa0623420	AT1G72130.3	33.718	347	200	7	124	464	3	325	7.27e-52	181
Msa0623420	AT5G14940.1	27.426	474	287	14	14	461	5	447	7.66e-42	156
Msa0623420	AT3G01350.1	25.786	477	307	10	14	464	5	460	2.96e-37	144
Msa0623420	AT2G38100.2	24.018	433	270	11	44	457	2	394	3.54e-22	99.8
Msa0623420	AT2G38100.1	24.018	433	270	11	44	457	18	410	4.88e-22	99.4
Msa0623420	AT2G38100.3	24.018	433	270	11	44	457	24	416	6.23e-22	99.0
Msa0623420	AT5G11570.1	21.461	438	265	11	25	457	22	385	8.90e-17	83.2

Find 100 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATTGTGCTTAATATTAT+TGG	0.168870	4_3:-710981	None:intergenic
TGCAGACATGTTACACTTAT+TGG	0.184438	4_3:+711379	Msa0623420:CDS
CTTCTGCATTCTCCGGAATT+TGG	0.196390	4_3:-710665	None:intergenic
CTTACCACAGGAGCAATATT+TGG	0.237027	4_3:+710348	Msa0623420:CDS
TTGGTGTTACTTTCATTAAT+TGG	0.238023	4_3:+710367	Msa0623420:CDS
AACAACCCTAACCAACTTAA+TGG	0.251379	4_3:+709309	Msa0623420:CDS
ACCTGTATGATTCTAATTAG+AGG	0.292803	4_3:-710510	None:intergenic
GAAAGTTGAGCTGCTTCCTT+TGG	0.308304	4_3:-710297	None:intergenic
CACCTTCAAAGAATTGGAAT+TGG	0.309993	4_3:+711206	Msa0623420:CDS
TTGGATCTTTATCATCAAAT+TGG	0.315670	4_3:-710278	None:intergenic
CCTAGTCTTCTTTGTACCCT+TGG	0.318512	4_3:-709060	None:intergenic
ATCTACCATATTATGTTCTA+TGG	0.326060	4_3:-711294	None:intergenic
CAGTTCCCATTAAGTTGGTT+AGG	0.326657	4_3:-709315	None:intergenic
ATCAGACACCTTCAAAGAAT+TGG	0.327219	4_3:+711200	Msa0623420:CDS
TCTTTGAAGGTGTCTGATTC+CGG	0.339948	4_3:-711195	None:intergenic
GCTATATCTTTGCAAGGAAT+TGG	0.342659	4_3:-710129	None:intergenic
TTAAAAGGACTGATCAATTC+AGG	0.346244	4_3:+710736	Msa0623420:CDS
CACTTGTTCCTAATGCAAAA+AGG	0.346610	4_3:-710221	None:intergenic
ACAGTTATGAAATCCTTAAA+AGG	0.349093	4_3:+710721	Msa0623420:CDS
TCACATTGGTTCATATGAAT+TGG	0.352432	4_3:-710153	None:intergenic
GCTATATCAATGTTAGTTGC+TGG	0.355294	4_3:+711242	Msa0623420:CDS
CTCAATTCTCTCTATTTGCA+TGG	0.360522	4_3:+710449	Msa0623420:CDS
TGTAGCCATAGAACATAATA+TGG	0.362955	4_3:+711289	Msa0623420:CDS
TGCATTTCTTCTGCATTCTC+CGG	0.374049	4_3:-710672	None:intergenic
AAGGAATTGGTCTTAATTGT+TGG	0.385710	4_3:-710116	None:intergenic
CTCGGTCGTATAGAGGAATT+AGG	0.398446	4_3:-711133	None:intergenic
CATTTATCTATATAAGTTCA+TGG	0.398857	4_3:+708747	Msa0623420:five_prime_UTR
ATGAACAATAGAGGGATTAC+TGG	0.402130	4_3:-711104	None:intergenic
ATCCAATTCCAATTCTTTGA+AGG	0.403302	4_3:-711208	None:intergenic
CTAATTAGAGGACTTCCCTT+TGG	0.409783	4_3:-710498	None:intergenic
CCAGGGAATCTGCAGAAGTA+TGG	0.410219	4_3:+709029	Msa0623420:intron
AGCTTAATAACTTATTTCAC+TGG	0.415965	4_3:+709256	Msa0623420:CDS
TTAATATTATTGGTAGCATT+CGG	0.424737	4_3:-710971	None:intergenic
AACCTTGGACACAAACATCT+TGG	0.425740	4_3:+711055	Msa0623420:CDS
ATCAAATTGGTCAGCTCCTA+AGG	0.427585	4_3:-710265	None:intergenic
TTGTGTTCTGTTTGCATGCA+TGG	0.432835	4_3:+709399	Msa0623420:CDS
AACCAATGTGAACCTGCTAA+TGG	0.439088	4_3:+710165	Msa0623420:CDS
ATTAGGAACAAGTGGTGTTA+AGG	0.443046	4_3:+710230	Msa0623420:CDS
TCAAAGAATTGGAATTGGAT+TGG	0.444870	4_3:+711211	Msa0623420:CDS
AAACAGAAAACTCCAAATTC+CGG	0.450491	4_3:+710653	Msa0623420:CDS
GAAGGTGTCTGATTCCGGTT+GGG	0.453057	4_3:-711190	None:intergenic
ACCTTGGACACAAACATCTT+GGG	0.453201	4_3:+711056	Msa0623420:CDS
ACAACCCTAACCAACTTAAT+GGG	0.457460	4_3:+709310	Msa0623420:CDS
CAAGCTGCTATACTTTATAC+AGG	0.458105	4_3:+710192	Msa0623420:CDS
GTACTAATCAAGGATGGTAT+TGG	0.459784	4_3:+710394	Msa0623420:CDS
GGAAACGTGCTTGAACTGTT+AGG	0.460595	4_3:-710095	None:intergenic
AGTTCCCATTAAGTTGGTTA+GGG	0.462802	4_3:-709314	None:intergenic
AAAAGCAGTTCCCATTAAGT+TGG	0.463975	4_3:-709320	None:intergenic
GCAGCTTGGCTTCCATTAGC+AGG	0.464099	4_3:-710177	None:intergenic
TTCTTAGATAGAGCAGCAGT+TGG	0.471072	4_3:+710882	Msa0623420:CDS
AGGACAAACATGAACAATAG+AGG	0.473937	4_3:-711113	None:intergenic
AATTGGATTAGTACTAATCA+AGG	0.476446	4_3:+710384	Msa0623420:CDS
GTTTGCATGCATGGAATTGT+TGG	0.479572	4_3:+709408	Msa0623420:CDS
AAGGCAGCTTTACCAGCCTT+AGG	0.482025	4_3:+710249	Msa0623420:CDS
AGTTATTAAGCTCACTGCAT+TGG	0.489046	4_3:-709245	None:intergenic
TGAAGGTGTCTGATTCCGGT+TGG	0.491653	4_3:-711191	None:intergenic
TCCTCTAATTAGAATCATAC+AGG	0.495772	4_3:+710509	Msa0623420:CDS
TACAGAAACAATACTCCAAA+GGG	0.497381	4_3:+710483	Msa0623420:CDS
GTTGAACTTTCAGGTGTTTG+TGG	0.503430	4_3:+710620	Msa0623420:intron
CAAATATTGCTCCTGTGGTA+AGG	0.505900	4_3:-710347	None:intergenic
TTTCTGATACATATTTGTCT+AGG	0.508442	4_3:+709368	Msa0623420:CDS
ATTACTGGGAGGGAGGGTCC+TGG	0.515478	4_3:-711089	None:intergenic
TTAGATAGAGCAGCAGTTGG+AGG	0.517849	4_3:+710885	Msa0623420:CDS
CTGTGATTCTTCGAATAAGC+GGG	0.518290	4_3:-711163	None:intergenic
TTATTGGTAGCATTCGGACT+AGG	0.518823	4_3:-710965	None:intergenic
ATCTTGGGATTCAAAATGCC+AGG	0.520418	4_3:+711071	Msa0623420:CDS
GAGGAAACAGTACAGGATCA+TGG	0.528992	4_3:+710904	Msa0623420:CDS
TTAGTGTCTTCTTGATCTGA+AGG	0.531501	4_3:-708809	None:intergenic
AGAATCACAGGAATCCCAAC+CGG	0.532778	4_3:+711176	Msa0623420:CDS
TCCCAAGATGTTTGTGTCCA+AGG	0.533877	4_3:-711057	None:intergenic
TCAATTCTCTCTATTTGCAT+GGG	0.538564	4_3:+710450	Msa0623420:CDS
TTCCATTAGCAGGTTCACAT+TGG	0.538946	4_3:-710167	None:intergenic
CCAAGGGTACAAAGAAGACT+AGG	0.545747	4_3:+709060	Msa0623420:CDS
CATACAACAAAGCACAACCT+TGG	0.548442	4_3:+711040	Msa0623420:CDS
GCAGTTGGAGGAAACAGTAC+AGG	0.551246	4_3:+710897	Msa0623420:CDS
AGAGGGATTACTGGGAGGGA+GGG	0.552016	4_3:-711095	None:intergenic
GATAAATGTGCCGCAAGTTG+TGG	0.555661	4_3:-708732	None:intergenic
CCGCTTATTCGAAGAATCAC+AGG	0.558543	4_3:+711164	Msa0623420:CDS
AATTGGTCAGCTCCTAAGGC+TGG	0.558800	4_3:-710261	None:intergenic
GCTTAATAACTTATTTCACT+GGG	0.561279	4_3:+709257	Msa0623420:CDS
TAGAGGGATTACTGGGAGGG+AGG	0.563260	4_3:-711096	None:intergenic
CTTACTTCATCCACAACTTG+CGG	0.568581	4_3:+708722	Msa0623420:five_prime_UTR
CAATAGAGGGATTACTGGGA+GGG	0.581806	4_3:-711099	None:intergenic
CTACAGAAACAATACTCCAA+AGG	0.582632	4_3:+710482	Msa0623420:CDS
TATGGAAGGGTTAGAGAACA+TGG	0.587825	4_3:+709213	Msa0623420:CDS
AACACCAAATATTGCTCCTG+TGG	0.591161	4_3:-710352	None:intergenic
GGACAAACATGAACAATAGA+GGG	0.591843	4_3:-711112	None:intergenic
ATTGGTGCTATATCTTTGCA+AGG	0.603950	4_3:-710135	None:intergenic
ATTTGATGATAAAGATCCAA+AGG	0.609608	4_3:+710281	Msa0623420:CDS
CTGTATAAAGTATAGCAGCT+TGG	0.610383	4_3:-710191	None:intergenic
TGAACAATAGAGGGATTACT+GGG	0.612071	4_3:-711103	None:intergenic
GAAGTATGGCAACACAACCA+AGG	0.637959	4_3:+709043	Msa0623420:CDS
CCTGTGATTCTTCGAATAAG+CGG	0.644958	4_3:-711164	None:intergenic
GGATTAGTACTAATCAAGGA+TGG	0.648794	4_3:+710388	Msa0623420:CDS
AAGTATGGCAACACAACCAA+GGG	0.650795	4_3:+709044	Msa0623420:CDS
GAAATTAATCCACCTAGGAG+TGG	0.661331	4_3:-709349	None:intergenic
GATCAAGAAGACACTAACAA+TGG	0.665654	4_3:+708815	Msa0623420:exon
TATCAGAAATTAATCCACCT+AGG	0.677447	4_3:-709354	None:intergenic
AGGGTACAAAGAAGACTAGG+AGG	0.688134	4_3:+709063	Msa0623420:CDS
ACAATAGAGGGATTACTGGG+AGG	0.708379	4_3:-711100	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGACATTATAAAAATAAATT+TGG	-	chr4_3:708675-708694	None:intergenic	10.0%
!!	TCAATTTCTTAAATTATTAT+AGG	+	chr4_3:708910-708929	Msa0623420:intron	10.0%
!!	TAAATTATTATAGGTTATAT+TGG	+	chr4_3:708919-708938	Msa0623420:intron	10.0%
!!!	AAACATTTTTAACATATAAA+AGG	-	chr4_3:709150-709169	None:intergenic	10.0%
!!!	ATTTTTAATGTTCTTCAAAA+TGG	+	chr4_3:708868-708887	Msa0623420:intron	15.0%
!!!	TAAATTGAAATTCCAATTTT+TGG	+	chr4_3:709183-709202	Msa0623420:intron	15.0%
!!	TGTTTATAATGATTAATCAT+GGG	-	chr4_3:709798-709817	None:intergenic	15.0%
!!	TTGTTTATAATGATTAATCA+TGG	-	chr4_3:709799-709818	None:intergenic	15.0%
!!!	AACTAATTTTTTTAATTGCA+GGG	+	chr4_3:710063-710082	Msa0623420:intron	15.0%
!!	AAAATGTTATTGTACTTTAA+AGG	+	chr4_3:710568-710587	Msa0623420:intron	15.0%
!!	AAATGTTATTGTACTTTAAA+GGG	+	chr4_3:710569-710588	Msa0623420:intron	15.0%
!!	AATATTGTGCTTAATATTAT+TGG	-	chr4_3:710984-711003	None:intergenic	15.0%
!!!	ATTTGGTTACATTTTTGTAA+GGG	-	chr4_3:708658-708677	None:intergenic	20.0%
!!!	AATTTGGTTACATTTTTGTA+AGG	-	chr4_3:708659-708678	None:intergenic	20.0%
!!	CATTTATCTATATAAGTTCA+TGG	+	chr4_3:708747-708766	Msa0623420:five_prime_UTR	20.0%
!!	TGAAGATAGAATAAAAATGA+GGG	-	chr4_3:709631-709650	None:intergenic	20.0%
!!!	GCATATGAGATTTTTTTAAA+AGG	+	chr4_3:710026-710045	Msa0623420:intron	20.0%
!!!	CAACTAATTTTTTTAATTGC+AGG	+	chr4_3:710062-710081	Msa0623420:intron	20.0%
!!!	AACTTTCAAGCTTTTTTAAT+TGG	+	chr4_3:710313-710332	Msa0623420:CDS	20.0%
!!!	ATTTAATTTGTTGAACTTTC+AGG	+	chr4_3:710611-710630	Msa0623420:intron	20.0%
!!!	TTAATATTATTGGTAGCATT+CGG	-	chr4_3:710974-710993	None:intergenic	20.0%
!	TGAAGAACATTAAAAATGTG+TGG	-	chr4_3:708865-708884	None:intergenic	25.0%
!!	ATTGAATCATTTTCCTTAAC+TGG	-	chr4_3:708895-708914	None:intergenic	25.0%
!!	TTTTGTATATGGTAAGAACT+TGG	+	chr4_3:709101-709120	Msa0623420:intron	25.0%
!	AGCTTAATAACTTATTTCAC+TGG	+	chr4_3:709256-709275	Msa0623420:CDS	25.0%
!	GCTTAATAACTTATTTCACT+GGG	+	chr4_3:709257-709276	Msa0623420:CDS	25.0%
!	TTTCTGATACATATTTGTCT+AGG	+	chr4_3:709368-709387	Msa0623420:CDS	25.0%
!!	TTGATTCTCAAATGTGTTTT+CGG	-	chr4_3:709515-709534	None:intergenic	25.0%
!	GTGAAGATAGAATAAAAATG+AGG	-	chr4_3:709632-709651	None:intergenic	25.0%
!	TAATTGAAGGTGAATGTTTA+AGG	+	chr4_3:709839-709858	Msa0623420:intron	25.0%
!	TAAAAAAATCTCATATGCGA+CGG	-	chr4_3:710024-710043	None:intergenic	25.0%
!	TTGGATCTTTATCATCAAAT+TGG	-	chr4_3:710281-710300	None:intergenic	25.0%
!!	ATTTGATGATAAAGATCCAA+AGG	+	chr4_3:710281-710300	Msa0623420:CDS	25.0%
!!!	TTGGTGTTACTTTCATTAAT+TGG	+	chr4_3:710367-710386	Msa0623420:CDS	25.0%
!!!	AATTGGATTAGTACTAATCA+AGG	+	chr4_3:710384-710403	Msa0623420:CDS	25.0%
!	ACAGTTATGAAATCCTTAAA+AGG	+	chr4_3:710721-710740	Msa0623420:CDS	25.0%
!	ATCTACCATATTATGTTCTA+TGG	-	chr4_3:711297-711316	None:intergenic	25.0%
!!!	GGTTTTCAATATGCTATTTT+TGG	+	chr4_3:711353-711372	Msa0623420:CDS	25.0%
	ACATATAAAAGGACACACAT+GGG	-	chr4_3:709139-709158	None:intergenic	30.0%
	AACATATAAAAGGACACACA+TGG	-	chr4_3:709140-709159	None:intergenic	30.0%
!	TTTTGTTAAGCTGAAGTTCA+TGG	-	chr4_3:709284-709303	None:intergenic	30.0%
	TATCAGAAATTAATCCACCT+AGG	-	chr4_3:709357-709376	None:intergenic	30.0%
	CATTCACCTTCAATTATTGA+AGG	-	chr4_3:709835-709854	None:intergenic	30.0%
!!	AAGGAATTGGTCTTAATTGT+TGG	-	chr4_3:710119-710138	None:intergenic	30.0%
!!	TCACATTGGTTCATATGAAT+TGG	-	chr4_3:710156-710175	None:intergenic	30.0%
	TCAATTCTCTCTATTTGCAT+GGG	+	chr4_3:710450-710469	Msa0623420:CDS	30.0%
	TACAGAAACAATACTCCAAA+GGG	+	chr4_3:710483-710502	Msa0623420:CDS	30.0%
	TCCTCTAATTAGAATCATAC+AGG	+	chr4_3:710509-710528	Msa0623420:CDS	30.0%
	ACCTGTATGATTCTAATTAG+AGG	-	chr4_3:710513-710532	None:intergenic	30.0%
	GAAGCATGTAGAAAAAAATG+AGG	-	chr4_3:710548-710567	None:intergenic	30.0%
	AAACAGAAAACTCCAAATTC+CGG	+	chr4_3:710653-710672	Msa0623420:CDS	30.0%
!	TGAATTGATCAGTCCTTTTA+AGG	-	chr4_3:710737-710756	None:intergenic	30.0%
	TTAAAAGGACTGATCAATTC+AGG	+	chr4_3:710736-710755	Msa0623420:CDS	30.0%
	ATCCAATTCCAATTCTTTGA+AGG	-	chr4_3:711211-711230	None:intergenic	30.0%
	TCAAAGAATTGGAATTGGAT+TGG	+	chr4_3:711211-711230	Msa0623420:CDS	30.0%
	TGTAGCCATAGAACATAATA+TGG	+	chr4_3:711289-711308	Msa0623420:CDS	30.0%
	CAAAAAACACTCATTGGTAA+AGG	-	chr4_3:711329-711348	None:intergenic	30.0%
!!!	CTTTACCAATGAGTGTTTTT+TGG	+	chr4_3:711327-711346	Msa0623420:CDS	30.0%
	TTAGTGTCTTCTTGATCTGA+AGG	-	chr4_3:708812-708831	None:intergenic	35.0%
	GATCAAGAAGACACTAACAA+TGG	+	chr4_3:708815-708834	Msa0623420:exon	35.0%
	TCTTCAAAATGGACCAGTTA+AGG	+	chr4_3:708879-708898	Msa0623420:intron	35.0%
!!	ATAGGTTATATTGGTGTCAC+TGG	+	chr4_3:708928-708947	Msa0623420:intron	35.0%
!	AGTGTTCTAAGCAGACAATT+CGG	-	chr4_3:708987-709006	None:intergenic	35.0%
!	AACTTGTTTGATTACTTGCC+AGG	+	chr4_3:709011-709030	Msa0623420:intron	35.0%
	ACTTGTTTGATTACTTGCCA+GGG	+	chr4_3:709012-709031	Msa0623420:intron	35.0%
!!	AGAGCTGCACTTTTTGTATA+TGG	+	chr4_3:709090-709109	Msa0623420:CDS	35.0%
	TATGGTAAGAACTTGGAACT+TGG	+	chr4_3:709108-709127	Msa0623420:intron	35.0%
	AGTTATTAAGCTCACTGCAT+TGG	-	chr4_3:709248-709267	None:intergenic	35.0%
	AACAACCCTAACCAACTTAA+TGG	+	chr4_3:709309-709328	Msa0623420:CDS	35.0%
	ACAACCCTAACCAACTTAAT+GGG	+	chr4_3:709310-709329	Msa0623420:CDS	35.0%
!!	AGTTCCCATTAAGTTGGTTA+GGG	-	chr4_3:709317-709336	None:intergenic	35.0%
	AAAAGCAGTTCCCATTAAGT+TGG	-	chr4_3:709323-709342	None:intergenic	35.0%
	CTATCTTCACTTGCATTTCA+CGG	+	chr4_3:709642-709661	Msa0623420:intron	35.0%
	TGAGAGCCTTCAATAATTGA+AGG	+	chr4_3:709826-709845	Msa0623420:intron	35.0%
	CGGTTGTAAAATAATCGCTA+TGG	-	chr4_3:710004-710023	None:intergenic	35.0%
	GCTATATCTTTGCAAGGAAT+TGG	-	chr4_3:710132-710151	None:intergenic	35.0%
!!	ATTGGTGCTATATCTTTGCA+AGG	-	chr4_3:710138-710157	None:intergenic	35.0%
	CTGTATAAAGTATAGCAGCT+TGG	-	chr4_3:710194-710213	None:intergenic	35.0%
	CAAGCTGCTATACTTTATAC+AGG	+	chr4_3:710192-710211	Msa0623420:CDS	35.0%
!	GGTCTATACCTTTTTGCATT+AGG	+	chr4_3:710213-710232	Msa0623420:CDS	35.0%
	CACTTGTTCCTAATGCAAAA+AGG	-	chr4_3:710224-710243	None:intergenic	35.0%
!	CTTTTTGCATTAGGAACAAG+TGG	+	chr4_3:710222-710241	Msa0623420:CDS	35.0%
!	ATTAGGAACAAGTGGTGTTA+AGG	+	chr4_3:710230-710249	Msa0623420:CDS	35.0%
!!!	TTTTTACTTAGCCTTACCAC+AGG	+	chr4_3:710336-710355	Msa0623420:CDS	35.0%
!	GGATTAGTACTAATCAAGGA+TGG	+	chr4_3:710388-710407	Msa0623420:CDS	35.0%
	GTACTAATCAAGGATGGTAT+TGG	+	chr4_3:710394-710413	Msa0623420:CDS	35.0%
	CTCAATTCTCTCTATTTGCA+TGG	+	chr4_3:710449-710468	Msa0623420:CDS	35.0%
	CTACAGAAACAATACTCCAA+AGG	+	chr4_3:710482-710501	Msa0623420:CDS	35.0%
!!!	TTGGAGTTTTCTGTTTCTGA+AGG	-	chr4_3:710649-710668	None:intergenic	35.0%
	GAGATCCATGAAAAAGAAAG+AGG	+	chr4_3:710696-710715	Msa0623420:CDS	35.0%
!!	TGTCTCCTCTTTCTTTTTCA+TGG	-	chr4_3:710704-710723	None:intergenic	35.0%
	TGAACAATAGAGGGATTACT+GGG	-	chr4_3:711106-711125	None:intergenic	35.0%
	ATGAACAATAGAGGGATTAC+TGG	-	chr4_3:711107-711126	None:intergenic	35.0%
	GGACAAACATGAACAATAGA+GGG	-	chr4_3:711115-711134	None:intergenic	35.0%
	AGGACAAACATGAACAATAG+AGG	-	chr4_3:711116-711135	None:intergenic	35.0%
	ATCAGACACCTTCAAAGAAT+TGG	+	chr4_3:711200-711219	Msa0623420:CDS	35.0%
	CACCTTCAAAGAATTGGAAT+TGG	+	chr4_3:711206-711225	Msa0623420:CDS	35.0%
	GCTATATCAATGTTAGTTGC+TGG	+	chr4_3:711242-711261	Msa0623420:CDS	35.0%
!!!	ACCAATGAGTGTTTTTTGGT+TGG	+	chr4_3:711331-711350	Msa0623420:CDS	35.0%
!!!	CCAATGAGTGTTTTTTGGTT+GGG	+	chr4_3:711332-711351	Msa0623420:CDS	35.0%
	TGCAGACATGTTACACTTAT+TGG	+	chr4_3:711379-711398	Msa0623420:CDS	35.0%
	CTTACTTCATCCACAACTTG+CGG	+	chr4_3:708722-708741	Msa0623420:five_prime_UTR	40.0%
	TTCTAAGCAGACAATTCGGT+TGG	-	chr4_3:708983-709002	None:intergenic	40.0%
	AAGTATGGCAACACAACCAA+GGG	+	chr4_3:709044-709063	Msa0623420:CDS	40.0%
	CCATAGCTGCATCCAAAAAT+TGG	-	chr4_3:709198-709217	None:intergenic	40.0%
!!	CCAATTTTTGGATGCAGCTA+TGG	+	chr4_3:709195-709214	Msa0623420:intron	40.0%
!	TTTTTGGATGCAGCTATGGA+AGG	+	chr4_3:709199-709218	Msa0623420:intron	40.0%
!	TTTTGGATGCAGCTATGGAA+GGG	+	chr4_3:709200-709219	Msa0623420:intron	40.0%
	TATGGAAGGGTTAGAGAACA+TGG	+	chr4_3:709213-709232	Msa0623420:CDS	40.0%
!!	CAGTTCCCATTAAGTTGGTT+AGG	-	chr4_3:709318-709337	None:intergenic	40.0%
!!!	GCTTTTTTACTACCACTCCT+AGG	+	chr4_3:709337-709356	Msa0623420:CDS	40.0%
!	TTTTTACTACCACTCCTAGG+TGG	+	chr4_3:709340-709359	Msa0623420:CDS	40.0%
	GAAATTAATCCACCTAGGAG+TGG	-	chr4_3:709352-709371	None:intergenic	40.0%
	TTGTGTTCTGTTTGCATGCA+TGG	+	chr4_3:709399-709418	Msa0623420:CDS	40.0%
	GTTTGCATGCATGGAATTGT+TGG	+	chr4_3:709408-709427	Msa0623420:CDS	40.0%
	CTCCTACATTACCAACCATA+GGG	-	chr4_3:709688-709707	None:intergenic	40.0%
	AACCAATGTGAACCTGCTAA+TGG	+	chr4_3:710165-710184	Msa0623420:CDS	40.0%
	TTCCATTAGCAGGTTCACAT+TGG	-	chr4_3:710170-710189	None:intergenic	40.0%
	ATCAAATTGGTCAGCTCCTA+AGG	-	chr4_3:710268-710287	None:intergenic	40.0%
	CAAATATTGCTCCTGTGGTA+AGG	-	chr4_3:710350-710369	None:intergenic	40.0%
	CTTACCACAGGAGCAATATT+TGG	+	chr4_3:710348-710367	Msa0623420:CDS	40.0%
	AACACCAAATATTGCTCCTG+TGG	-	chr4_3:710355-710374	None:intergenic	40.0%
	CTAATTAGAGGACTTCCCTT+TGG	-	chr4_3:710501-710520	None:intergenic	40.0%
!	GTTGAACTTTCAGGTGTTTG+TGG	+	chr4_3:710620-710639	Msa0623420:intron	40.0%
	TGCATTTCTTCTGCATTCTC+CGG	-	chr4_3:710675-710694	None:intergenic	40.0%
	TTCTTAGATAGAGCAGCAGT+TGG	+	chr4_3:710882-710901	Msa0623420:CDS	40.0%
!	TTATTGGTAGCATTCGGACT+AGG	-	chr4_3:710968-710987	None:intergenic	40.0%
	CATACAACAAAGCACAACCT+TGG	+	chr4_3:711040-711059	Msa0623420:CDS	40.0%
	AACCTTGGACACAAACATCT+TGG	+	chr4_3:711055-711074	Msa0623420:CDS	40.0%
	ACCTTGGACACAAACATCTT+GGG	+	chr4_3:711056-711075	Msa0623420:CDS	40.0%
	ATCTTGGGATTCAAAATGCC+AGG	+	chr4_3:711071-711090	Msa0623420:CDS	40.0%
	ACAAAAACTCGGTCGTATAG+AGG	-	chr4_3:711143-711162	None:intergenic	40.0%
	GAATAAGCGGGACAAAAACT+CGG	-	chr4_3:711154-711173	None:intergenic	40.0%
	CTGTGATTCTTCGAATAAGC+GGG	-	chr4_3:711166-711185	None:intergenic	40.0%
	CCTGTGATTCTTCGAATAAG+CGG	-	chr4_3:711167-711186	None:intergenic	40.0%
!!	TCTTTGAAGGTGTCTGATTC+CGG	-	chr4_3:711198-711217	None:intergenic	40.0%
	CCCAACCAAAAAACACTCAT+TGG	-	chr4_3:711335-711354	None:intergenic	40.0%
	GATAAATGTGCCGCAAGTTG+TGG	-	chr4_3:708735-708754	None:intergenic	45.0%
	GAAGTATGGCAACACAACCA+AGG	+	chr4_3:709043-709062	Msa0623420:CDS	45.0%
!	CCTAGTCTTCTTTGTACCCT+TGG	-	chr4_3:709063-709082	None:intergenic	45.0%
!	CCAAGGGTACAAAGAAGACT+AGG	+	chr4_3:709060-709079	Msa0623420:CDS	45.0%
	AGGGTACAAAGAAGACTAGG+AGG	+	chr4_3:709063-709082	Msa0623420:CDS	45.0%
	TTGCATTTCACGGTACAGCA+AGG	+	chr4_3:709652-709671	Msa0623420:intron	45.0%
	GCTCCTACATTACCAACCAT+AGG	-	chr4_3:709689-709708	None:intergenic	45.0%
!!	TGGTTGGTAATGTAGGAGCT+AGG	+	chr4_3:709690-709709	Msa0623420:intron	45.0%
!!	GGTTGGTAATGTAGGAGCTA+GGG	+	chr4_3:709691-709710	Msa0623420:intron	45.0%
	GTACTTTCAGCATCATGACG+TGG	+	chr4_3:709767-709786	Msa0623420:intron	45.0%
	GGAAACGTGCTTGAACTGTT+AGG	-	chr4_3:710098-710117	None:intergenic	45.0%
	GAAAGTTGAGCTGCTTCCTT+TGG	-	chr4_3:710300-710319	None:intergenic	45.0%
	CTTCTGCATTCTCCGGAATT+TGG	-	chr4_3:710668-710687	None:intergenic	45.0%
	TTAGATAGAGCAGCAGTTGG+AGG	+	chr4_3:710885-710904	Msa0623420:CDS	45.0%
	GAGGAAACAGTACAGGATCA+TGG	+	chr4_3:710904-710923	Msa0623420:CDS	45.0%
	TCCCAAGATGTTTGTGTCCA+AGG	-	chr4_3:711060-711079	None:intergenic	45.0%
	CAATAGAGGGATTACTGGGA+GGG	-	chr4_3:711102-711121	None:intergenic	45.0%
	ACAATAGAGGGATTACTGGG+AGG	-	chr4_3:711103-711122	None:intergenic	45.0%
	CTCGGTCGTATAGAGGAATT+AGG	-	chr4_3:711136-711155	None:intergenic	45.0%
	CCGCTTATTCGAAGAATCAC+AGG	+	chr4_3:711164-711183	Msa0623420:CDS	45.0%
	AGAATCACAGGAATCCCAAC+CGG	+	chr4_3:711176-711195	Msa0623420:CDS	45.0%
	CCATACTTCTGCAGATTCCC+TGG	-	chr4_3:709032-709051	None:intergenic	50.0%
	CCAGGGAATCTGCAGAAGTA+TGG	+	chr4_3:709029-709048	Msa0623420:intron	50.0%
	ACGGTACAGCAAGGTGAAGA+GGG	+	chr4_3:709661-709680	Msa0623420:intron	50.0%
!!	GGCCCTATGGTTGGTAATGT+AGG	+	chr4_3:709683-709702	Msa0623420:intron	50.0%
	AAGGCAGCTTTACCAGCCTT+AGG	+	chr4_3:710249-710268	Msa0623420:CDS	50.0%
	AATTGGTCAGCTCCTAAGGC+TGG	-	chr4_3:710264-710283	None:intergenic	50.0%
	GCAGTTGGAGGAAACAGTAC+AGG	+	chr4_3:710897-710916	Msa0623420:CDS	50.0%
!!	GAAGGTGTCTGATTCCGGTT+GGG	-	chr4_3:711193-711212	None:intergenic	50.0%
!!	TGAAGGTGTCTGATTCCGGT+TGG	-	chr4_3:711194-711213	None:intergenic	50.0%
	CACGGTACAGCAAGGTGAAG+AGG	+	chr4_3:709660-709679	Msa0623420:intron	55.0%
	CGGTACAGCAAGGTGAAGAG+GGG	+	chr4_3:709662-709681	Msa0623420:intron	55.0%
	GCAGCTTGGCTTCCATTAGC+AGG	-	chr4_3:710180-710199	None:intergenic	55.0%
	AGAGGGATTACTGGGAGGGA+GGG	-	chr4_3:711098-711117	None:intergenic	55.0%
	TAGAGGGATTACTGGGAGGG+AGG	-	chr4_3:711099-711118	None:intergenic	55.0%
	CAAGGTGAAGAGGGGCCCTA+TGG	+	chr4_3:709670-709689	Msa0623420:intron	60.0%
	GTGAAGAGGGGCCCTATGGT+TGG	+	chr4_3:709674-709693	Msa0623420:intron	60.0%
	ATTACTGGGAGGGAGGGTCC+TGG	-	chr4_3:711092-711111	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	708636	711409	708636	ID=Msa0623420;Name=Msa0623420
chr4_3	mRNA	708636	711409	708636	ID=Msa0623420-mRNA-1;Parent=Msa0623420;Name=Msa0623420-mRNA-1;_AED=0.14;_eAED=0.14;_QI=198\|1\|0.83\|1\|0.8\|0.66\|6\|0\|466
chr4_3	exon	708636	708836	708636	ID=Msa0623420-mRNA-1:exon:232;Parent=Msa0623420-mRNA-1
chr4_3	exon	709033	709111	709033	ID=Msa0623420-mRNA-1:exon:233;Parent=Msa0623420-mRNA-1
chr4_3	exon	709212	709429	709212	ID=Msa0623420-mRNA-1:exon:234;Parent=Msa0623420-mRNA-1
chr4_3	exon	710084	710530	710084	ID=Msa0623420-mRNA-1:exon:235;Parent=Msa0623420-mRNA-1
chr4_3	exon	710633	710757	710633	ID=Msa0623420-mRNA-1:exon:236;Parent=Msa0623420-mRNA-1
chr4_3	exon	710881	711409	710881	ID=Msa0623420-mRNA-1:exon:237;Parent=Msa0623420-mRNA-1
chr4_3	five_prime_UTR	708636	708833	708636	ID=Msa0623420-mRNA-1:five_prime_utr;Parent=Msa0623420-mRNA-1
chr4_3	CDS	708834	708836	708834	ID=Msa0623420-mRNA-1:cds;Parent=Msa0623420-mRNA-1
chr4_3	CDS	709033	709111	709033	ID=Msa0623420-mRNA-1:cds;Parent=Msa0623420-mRNA-1
chr4_3	CDS	709212	709429	709212	ID=Msa0623420-mRNA-1:cds;Parent=Msa0623420-mRNA-1
chr4_3	CDS	710084	710530	710084	ID=Msa0623420-mRNA-1:cds;Parent=Msa0623420-mRNA-1
chr4_3	CDS	710633	710757	710633	ID=Msa0623420-mRNA-1:cds;Parent=Msa0623420-mRNA-1
chr4_3	CDS	710881	711409	710881	ID=Msa0623420-mRNA-1:cds;Parent=Msa0623420-mRNA-1

Gene Sequence

>Msa0623420

ATGGGAATCTGCAGAAGTATGGCAACACAACCAAGGGTACAAAGAAGACTAGGAGGAAAAAGAGCTGCACTTTTTGTATATGCTATGGAAGGGTTAGAGAACATGGCTTTTGTTGCCAATGCAGTGAGCTTAATAACTTATTTCACTGGGTCCATGAACTTCAGCTTAACAAAATCAGCAACAACCCTAACCAACTTAATGGGAACTGCTTTTTTACTACCACTCCTAGGTGGATTAATTTCTGATACATATTTGTCTAGGTTCAAGACTTGTGTTCTGTTTGCATGCATGGAATTGTTGGGATATAGTATCCTAACAGTTCAAGCACGTTTCCAACAATTAAGACCAATTCCTTGCAAAGATATAGCACCAATTCATATGAACCAATGTGAACCTGCTAATGGAAGCCAAGCTGCTATACTTTATACAGGTCTATACCTTTTTGCATTAGGAACAAGTGGTGTTAAGGCAGCTTTACCAGCCTTAGGAGCTGACCAATTTGATGATAAAGATCCAAAGGAAGCAGCTCAACTTTCAAGCTTTTTTAATTGGTTTTTACTTAGCCTTACCACAGGAGCAATATTTGGTGTTACTTTCATTAATTGGATTAGTACTAATCAAGGATGGTATTGGAGTTTTACTGTATGCACTATAGCAGTCTTTCTCTCAATTCTCTCTATTTGCATGGGTAAGTCATTCTACAGAAACAATACTCCAAAGGGAAGTCCTCTAATTAGAATCATACAGGTGTTTGTGGCAGCCTTCAGAAACAGAAAACTCCAAATTCCGGAGAATGCAGAAGAAATGCATGAGATCCATGAAAAAGAAAGAGGAGACAGTTATGAAATCCTTAAAAGGACTGATCAATTCAGATTCTTAGATAGAGCAGCAGTTGGAGGAAACAGTACAGGATCATGGAATCTTTGCACAGTGACACAAGTAGAAGAAACAAAAATCCTAGTCCGAATGCTACCAATAATATTAAGCACAATATTTATGAACACATGTTTAGCACAGCTTCAAACTTTCAGCATACAACAAAGCACAACCTTGGACACAAACATCTTGGGATTCAAAATGCCAGGACCCTCCCTCCCAGTAATCCCTCTATTGTTCATGTTTGTCCTAATTCCTCTATACGACCGAGTTTTTGTCCCGCTTATTCGAAGAATCACAGGAATCCCAACCGGAATCAGACACCTTCAAAGAATTGGAATTGGATTGGTTCTATCAGCTATATCAATGTTAGTTGCTGGTTTTGTCGAAACACGTAGAAAATCTGTAGCCATAGAACATAATATGGTAGATAGCACTGAGCCTTTACCAATGAGTGTTTTTTGGTTGGGTTTTCAATATGCTATTTTTGGAGCTGCAGACATGTTACACTTATTGGACTTCTAG

Protein sequence

>Msa0623420

MGICRSMATQPRVQRRLGGKRAALFVYAMEGLENMAFVANAVSLITYFTGSMNFSLTKSATTLTNLMGTAFLLPLLGGLISDTYLSRFKTCVLFACMELLGYSILTVQARFQQLRPIPCKDIAPIHMNQCEPANGSQAAILYTGLYLFALGTSGVKAALPALGADQFDDKDPKEAAQLSSFFNWFLLSLTTGAIFGVTFINWISTNQGWYWSFTVCTIAVFLSILSICMGKSFYRNNTPKGSPLIRIIQVFVAAFRNRKLQIPENAEEMHEIHEKERGDSYEILKRTDQFRFLDRAAVGGNSTGSWNLCTVTQVEETKILVRMLPIILSTIFMNTCLAQLQTFSIQQSTTLDTNILGFKMPGPSLPVIPLLFMFVLIPLYDRVFVPLIRRITGIPTGIRHLQRIGIGLVLSAISMLVAGFVETRRKSVAIEHNMVDSTEPLPMSVFWLGFQYAIFGAADMLHLLDF*