AlfalfaGEDB | Msa1226210

M. sativa cultivar zhongmu-4 / Msa1226210

KEGG: K01180
GO: GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819
PFAM: PF03639.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226210	XP_013451227.1	97.309	669	18	0	1	669	1	669	0.0	1328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226210	sp\|D4AZ24\|ENG1_ARTBC	27.596	703	416	31	36	670	225	902	4.85e-44	173

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226210	A0EJF0	97.309	669	18	0	1	669	1	669	0.0	1328

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa1226210	0.807249	5.544145e-50	-8.615850e-47
Msa0014590	Msa1226210	0.813240	2.828708e-51	-8.615850e-47
Msa0027860	Msa1226210	0.806219	9.147357e-50	-8.615850e-47
Msa0040210	Msa1226210	0.841078	5.908521e-58	-8.615850e-47
Msa0046680	Msa1226210	0.810213	1.289089e-50	-8.615850e-47
Msa0059880	Msa1226210	0.821168	4.660183e-53	-8.615850e-47
Msa0064990	Msa1226210	0.824686	7.057631e-54	-8.615850e-47
Msa0087900	Msa1226210	0.869108	3.962229e-66	-8.615850e-47
Msa0095910	Msa1226210	0.801486	8.800648e-49	-8.615850e-47
Msa0134570	Msa1226210	0.823587	1.278256e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1226210	MtrunA17_Chr6g0456601	97.309	669	18	0	1	669	1	669	1328
Msa1226210	MtrunA17_Chr6g0456571	78.464	664	141	2	7	670	6	667	1029
Msa1226210	MtrunA17_Chr6g0456561	77.037	675	150	4	1	674	54	724	1019
Msa1226210	MtrunA17_Chr6g0456541	70.615	667	194	2	8	674	71	735	994
Msa1226210	MtrunA17_Chr6g0456611	74.118	680	169	4	1	674	1	679	981
Msa1226210	MtrunA17_Chr6g0456551	67.634	655	203	5	17	668	11	659	877
Msa1226210	MtrunA17_Chr7g0218781	65.244	656	221	6	15	668	13	663	873
Msa1226210	MtrunA17_Chr6g0456581	66.566	661	212	5	11	668	5	659	859
Msa1226210	MtrunA17_Chr7g0219071	64.545	660	227	6	11	668	58	712	848
Msa1226210	MtrunA17_Chr6g0456621	66.667	672	195	7	1	668	7	653	833

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226210	AT5G15870.1	63.922	668	231	6	6	668	50	712	0.0	862
Msa1226210	AT1G18310.1	59.680	687	208	9	8	668	5	648	0.0	798

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Find 140 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTCCACAAGTGAAT+AGG	0.404198	8_2:-272617	None:intergenic
AAATTCTTGGAACCAAAATG+TGG	0.667091	8_2:+272860	Msa1226210:CDS
AACAAGAAAGAAACTGAGAT+TGG	0.428185	8_2:-271639	None:intergenic
AACTTAACAATGGTCAAACA+TGG	0.576597	8_2:+271777	Msa1226210:CDS
AACTTATACTCAACACAAAA+TGG	0.314989	8_2:-271977	None:intergenic
AAGAAACTGAGATTGGAAGA+AGG	0.461405	8_2:-271632	None:intergenic
AAGAAAGAGTTTGTAGGGAG+GGG	0.509342	8_2:-271371	None:intergenic
AAGAAGATAAGAAGTTTGAA+TGG	0.450385	8_2:+273195	Msa1226210:CDS
AAGGTGGTGTTGGAGAAGGA+TGG	0.504399	8_2:+273121	Msa1226210:CDS
AAGTTATGGTGAGATCATTG+TGG	0.597525	8_2:-271526	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGATTTGGAGAGAAGAATT+TGG	-	chr8_2:271342-271361	None:intergenic	30.0%
TTTGGAAGAAAGAGTTTGTA+GGG	-	chr8_2:271379-271398	None:intergenic	30.0%
CAAAACTTTGTTCTCAACAA+TGG	+	chr8_2:271395-271414	Msa1226210:CDS	30.0%
AACAAGAAAGAAACTGAGAT+TGG	-	chr8_2:271642-271661	None:intergenic	30.0%
AACTTAACAATGGTCAAACA+TGG	+	chr8_2:271777-271796	Msa1226210:CDS	30.0%
GTAAAATGACTCAACTTGAT+TGG	-	chr8_2:271821-271840	None:intergenic	30.0%
AAAATCTTCCACAAGTGAAT+AGG	-	chr8_2:272620-272639	None:intergenic	30.0%
CTAACATCATTGGAAATTCT+TGG	+	chr8_2:272847-272866	Msa1226210:CDS	30.0%
AAATTCTTGGAACCAAAATG+TGG	+	chr8_2:272860-272879	Msa1226210:CDS	30.0%
ATGTTAAAGATCTTGTGGAA+TGG	+	chr8_2:273076-273095	Msa1226210:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	271266	273290	271266	ID=Msa1226210;Name=Msa1226210
chr8_2	mRNA	271266	273290	271266	ID=Msa1226210-mRNA-1;Parent=Msa1226210;Name=Msa1226210-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|674
chr8_2	exon	271266	273290	271266	ID=Msa1226210-mRNA-1:exon:10;Parent=Msa1226210-mRNA-1
chr8_2	CDS	271266	273290	271266	ID=Msa1226210-mRNA-1:cds;Parent=Msa1226210-mRNA-1

Gene Sequence

>Msa1226210

ATGTCTTCAACTATCAACAAGAACAAATCTTTTCTATTCCCACAGGGTAATTCCACTGTCCTCCCTGACCCCTCCAAATTCTTCTCTCCAAATCTACTATCCACACCCCTCCCTACAAACTCTTTCTTCCAAAACTTTGTTCTCAACAATGGTGATGCACCTGAATACTTTCATCCTTACCTCATCAAATCATCAAACTCATCACTTTCTGTCTCATACCCTACTCGCTCTTCGAATTCTGCTGTCATATCCCAAGTTTTCCACAATGATCTCACCATAACTTCTAATCAGCAGAATACCAAACAAAGTTCTAATGGAAAACATATAATCTCTTCTTATAGTGATCTCAGTGTTACCTTAGATATCCCTTCTTCCAATCTCAGTTTCTTTCTTGTTAGAGGAAGTCCTTATTTGACTTTTTCTGTAACAAAACCAACCCCTCTTTCCATTTCCACCATTCATGCCATTACTTCTTTCTCTTCAAATAGCTCCCTTACCAGGTTCAAGTTTCAACTTAACAATGGTCAAACATGGATACTATATGCTTCCTCACCAATCAAGTTGAGTCATTTTACTTCTCAGATCATTTCTGACACCTTTTCCGGCATAATTCGGATTGCTTTGCTACCGGATTCTGATTCGAAAAACGAAGCTGTTCTTGACAGATTTAGTTCTTGTCACCCTTTAGCAGGTAATGCTAAACTCAGAGAACCATTTTGTGTTGAGTATAAGTTTGATAAAAATGGTTCAGGTGATTTGTTATTGTTAGCACACCCTCTTCATCTTCAACTTCTGTCAAAAAGTGTTAGTGATGTAACTGTTCTTGATGATTTCAAGTATAAAAGCATTGATGGTGACCTTGTCGGTGTTGTTGGTGATTCATGGATTTTGAAAACAGAACCTGTTTCAATGACTTGGCACTCAAGCAAAGGTGTAAAAGAAGAATCACGCGATGAAATTGTTTCATCACTTTCTAAAGATGTTGAAGGTTTAAACTCATCTGCAACAAAAGCAACAACATCATCTTATTTTTATGGAAAATTGATTGCAAGAGCAGCTAGGCTTGCATTGATAGCTGAAGAGGTTTTCTTCTTTGATGCTATTGAAAAAGTTAGAAACTTTTTGAAGGAAACCATTGAGCCTTGGCTTGATGGAACTTTTAATGGAAATGGATTTCTATATGATAGAAAATGGGGAGGACTTATTACTCAACAAGGGTCTAATGATGGTGGTGGTGATTTCGGTTTCGGAATTTACAATGATCATCATTTTCACTTAGGATATTTTCTTTACGCAATCGCAGTGCTTGTAAAGATCGATCCATCATGGGGTAGGAAGTATAAGGCTCAAGCCTATTCACTTGTGGAAGATTTTATGAACTTAAGCATAGAATCGAACTCAAATTATACGCGTTTGAGGTGTTTCGATCTTTACAAGTTGCATTCGTGGGCCGGAGGGCTAACCGAGTTTTCAGATGGAAGGAATCAAGAGAGTACTAGTGAAGCTGTGAATGCATACTATGCTGCAGCATTAATGGGAATGGCATATGGTGATTCTCAACTTGTGTCTATTGGATCAACACTAACATCATTGGAAATTCTTGGAACCAAAATGTGGTGGCATGTTAAAAAGAATGGGAAATTGTATGAAGAAGAGTTTACAAAAGAGAATAGAATAGTGGGAGTTTTGTGGAATAATAAAAGAGATAGTGGACTTTGGTTTGCACCTGCTGAATGGAGAGAAGCTAGGACAGGAATTCAGCTTATACCATTGGCTCCTATTTCTGAAGATTTGTTTTCTGATGTTGATTATGTTAAAGATCTTGTGGAATGGACATTGCCTGCTTTGAATAGGGAAGGTGGTGTTGGAGAAGGATGGAAGGGATTCTTGTATTCATTGGAAGGAATTTATGATAATGAAAGTGCATTGAAGAAGATAAGAAGTTTGAATGGTTTTGATGGTGGAAACTCTTTGACTAATCTTTTGTGGTGGATTCATAGCAGAGGTGAAGGTGGTGATGAGTAG

Protein sequence

>Msa1226210

MSSTINKNKSFLFPQGNSTVLPDPSKFFSPNLLSTPLPTNSFFQNFVLNNGDAPEYFHPYLIKSSNSSLSVSYPTRSSNSAVISQVFHNDLTITSNQQNTKQSSNGKHIISSYSDLSVTLDIPSSNLSFFLVRGSPYLTFSVTKPTPLSISTIHAITSFSSNSSLTRFKFQLNNGQTWILYASSPIKLSHFTSQIISDTFSGIIRIALLPDSDSKNEAVLDRFSSCHPLAGNAKLREPFCVEYKFDKNGSGDLLLLAHPLHLQLLSKSVSDVTVLDDFKYKSIDGDLVGVVGDSWILKTEPVSMTWHSSKGVKEESRDEIVSSLSKDVEGLNSSATKATTSSYFYGKLIARAARLALIAEEVFFFDAIEKVRNFLKETIEPWLDGTFNGNGFLYDRKWGGLITQQGSNDGGGDFGFGIYNDHHFHLGYFLYAIAVLVKIDPSWGRKYKAQAYSLVEDFMNLSIESNSNYTRLRCFDLYKLHSWAGGLTEFSDGRNQESTSEAVNAYYAAALMGMAYGDSQLVSIGSTLTSLEILGTKMWWHVKKNGKLYEEEFTKENRIVGVLWNNKRDSGLWFAPAEWREARTGIQLIPLAPISEDLFSDVDYVKDLVEWTLPALNREGGVGEGWKGFLYSLEGIYDNESALKKIRSLNGFDGGNSLTNLLWWIHSRGEGGDE*