AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470330 MtrunA17_Chr3g0125521 97.037 270 6 2 1 269 1 269 0.0 536
Msa0470330 MtrunA17_Chr5g0398211 50.000 176 83 3 50 221 38 212 3.35e-54 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470330 AT1G44000.1 59.193 223 84 4 33 250 40 260 6.30e-83 249
Msa0470330 AT4G11910.1 48.792 207 100 4 19 220 6 211 5.21e-57 184
Msa0470330 AT4G22920.2 50.279 179 82 4 50 222 42 219 3.30e-53 174
Msa0470330 AT4G22920.1 50.279 179 82 4 50 222 42 219 3.30e-53 174
Msa0470330 AT4G11911.1 47.980 198 97 4 21 213 8 204 2.56e-50 167
Msa0470330 AT4G11911.2 50.307 163 76 3 55 213 3 164 2.25e-46 155

Find 78 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATGGCTTTAACATAAA+AGG 0.172024 3_3:-72416293 None:intergenic
TGTCAGTGGTCCCACCTTCC+TGG 0.218929 3_3:+72417746 Msa0470330:CDS
TCTTCTTTCAAATGTATTAC+TGG 0.239741 3_3:+72419344 Msa0470330:CDS
ACTATAGAATCCAGCAATTC+TGG 0.262310 3_3:-72418612 None:intergenic
AAAACTGAAGGTTGTTCTAT+TGG 0.270997 3_3:+72417236 Msa0470330:CDS
CATAAAAGGGAATAATAGTT+TGG 0.275576 3_3:-72416279 None:intergenic
ACCTCCATTGCATCCTTTAG+AGG 0.283350 3_3:-72418690 None:intergenic
CTTTCCTCAGCTAGAACTTT+GGG 0.299158 3_3:+72419397 Msa0470330:exon
ATCTTAGACTGTTAGGCTCT+TGG 0.300131 3_3:+72417188 Msa0470330:intron
TGTCAAGTAAATGTGTTAAC+AGG 0.321931 3_3:+72419537 Msa0470330:three_prime_UTR
CTACAATTCACTTGTTTATG+AGG 0.352131 3_3:+72416367 Msa0470330:CDS
TCTTAGACTGTTAGGCTCTT+GGG 0.362154 3_3:+72417189 Msa0470330:intron
CCAAGAGCATCCAGAATTGC+TGG 0.364161 3_3:+72418602 Msa0470330:CDS
CTCATAAACAAGTGAATTGT+AGG 0.365356 3_3:-72416366 None:intergenic
ATACAATAGAATGGAATGTT+GGG 0.373761 3_3:+72418665 Msa0470330:CDS
TGGGATAGAATGTAGGTTCT+TGG 0.374986 3_3:-72417291 None:intergenic
AGTAGTAGTGATTGAGGAAG+AGG 0.375220 3_3:-72416330 None:intergenic
TCTTTCCTCAGCTAGAACTT+TGG 0.379723 3_3:+72419396 Msa0470330:exon
GTACTTAAAGCAATTCAATA+TGG 0.404542 3_3:+72418564 Msa0470330:CDS
AATACAATAGAATGGAATGT+TGG 0.405010 3_3:+72418664 Msa0470330:CDS
CAAATGTATTACTGGTAACT+TGG 0.405426 3_3:+72419352 Msa0470330:CDS
GAGCTTGGAAGTTGGACATT+GGG 0.411745 3_3:-72419311 None:intergenic
GGAATTAGTAGTAGTGATTG+AGG 0.419635 3_3:-72416336 None:intergenic
CCAGCAATTCTGGATGCTCT+TGG 0.429925 3_3:-72418602 None:intergenic
GTTCTAGCTGAGGAAAGAAT+CGG 0.444594 3_3:-72419391 None:intergenic
AGATCGTCCTCCTGAAAAGT+TGG 0.452073 3_3:+72419284 Msa0470330:CDS
TTTGGTTGGTGAAAATGAAA+AGG 0.458744 3_3:-72416261 None:intergenic
CTGCTCTAATTTGATGACAT+TGG 0.459455 3_3:-72417349 None:intergenic
ATGATGGCTTTAACATAAAA+GGG 0.462543 3_3:-72416292 None:intergenic
TTACTGTTATGCATCTTCAA+TGG 0.480394 3_3:+72416205 Msa0470330:exon
AAAGGGAATAATAGTTTGGT+TGG 0.481979 3_3:-72416275 None:intergenic
CTCAGTTTGATTGGTTCATG+TGG 0.491052 3_3:-72416069 None:intergenic
ATTCTCCAAGGAAATGACTT+TGG 0.498853 3_3:+72417797 Msa0470330:CDS
TAAACTCAGCAGCTAGATCC+AGG 0.500066 3_3:-72417764 None:intergenic
ACATACCAAAGTCATTTCCT+TGG 0.502450 3_3:-72417802 None:intergenic
CAATGTCATCAAATTAGAGC+AGG 0.504347 3_3:+72417350 Msa0470330:CDS
ATTTGAAGCTTCAAAACTGA+AGG 0.509783 3_3:+72417224 Msa0470330:CDS
GATAACTCATATCATTGAGT+GGG 0.515433 3_3:-72419571 None:intergenic
AGGAGAAAGAAAAGTGATGT+GGG 0.515635 3_3:-72416103 None:intergenic
GTTAAGACAGAGAAGAAAGA+AGG 0.516334 3_3:-72416123 None:intergenic
AGTAGTGATTGAGGAAGAGG+AGG 0.521908 3_3:-72416327 None:intergenic
TTCTAGCTGAGGAAAGAATC+GGG 0.522802 3_3:-72419390 None:intergenic
GATCGTCCTCCTGAAAAGTT+GGG 0.523261 3_3:+72419285 Msa0470330:CDS
CATGTTCATTGCTTTGTCAG+TGG 0.525605 3_3:+72417732 Msa0470330:CDS
AAGTGAATTGTAGGAAGGAG+TGG 0.525993 3_3:-72416357 None:intergenic
TGTTAGGCTCTTGGGTCCTC+CGG 0.526180 3_3:+72417197 Msa0470330:CDS
AGAGCTTGGAAGTTGGACAT+TGG 0.533577 3_3:-72419312 None:intergenic
AAACGAGCGGATCAGTTACA+AGG 0.534539 3_3:+72419249 Msa0470330:CDS
TAATACATTTGAAAGAAGAA+AGG 0.546906 3_3:-72419340 None:intergenic
TCCTCAGCTAGAACTTTGGG+TGG 0.548419 3_3:+72419400 Msa0470330:exon
GAGGAGCATCTGAAAGATGA+TGG 0.549556 3_3:-72416308 None:intergenic
GTTGAGAGGGTGGTATATGA+AGG 0.552011 3_3:+72417662 Msa0470330:intron
AAGGAGAAAGAAAAGTGATG+TGG 0.554153 3_3:-72416104 None:intergenic
AGGATGATGTTGTAGCTGAA+TGG 0.558895 3_3:+72417682 Msa0470330:CDS
AAGTAAATGTGTTAACAGGT+TGG 0.559037 3_3:+72419541 Msa0470330:three_prime_UTR
AGCAGCTAGATCCAGGAAGG+TGG 0.563297 3_3:-72417757 None:intergenic
AGCTAGAATGGAAATATACT+CGG 0.570364 3_3:-72418635 None:intergenic
TAGATATCACATATTCTCCA+AGG 0.573339 3_3:+72417785 Msa0470330:CDS
GCCTCTAAAGGATGCAATGG+AGG 0.575264 3_3:+72418689 Msa0470330:CDS
TGATAACTCATATCATTGAG+TGG 0.579150 3_3:-72419572 None:intergenic
TACAATAGAATGGAATGTTG+GGG 0.580589 3_3:+72418666 Msa0470330:CDS
AGCATATTTCTTGTGCACAA+AGG 0.591145 3_3:+72419487 Msa0470330:three_prime_UTR
TAAACAAGTGAATTGTAGGA+AGG 0.591615 3_3:-72416362 None:intergenic
CTGTGAAATGGCAGTTGAGA+GGG 0.593385 3_3:+72417649 Msa0470330:intron
GCAGCTAGATCCAGGAAGGT+GGG 0.601168 3_3:-72417756 None:intergenic
GGGGCCTCTAAAGGATGCAA+TGG 0.602659 3_3:+72418686 Msa0470330:CDS
GTCACAGTGGGATAGAATGT+AGG 0.608968 3_3:-72417298 None:intergenic
ATTAGCTGTTAAGTCACAGT+GGG 0.615651 3_3:-72417310 None:intergenic
CTCAGCAGCTAGATCCAGGA+AGG 0.626953 3_3:-72417760 None:intergenic
TGACAAAGCAATGAACATGT+AGG 0.637146 3_3:-72417728 None:intergenic
CTTGCAAGAATGACTCCAAG+AGG 0.637333 3_3:+72419444 Msa0470330:three_prime_UTR
ACCACCCAAAGTTCTAGCTG+AGG 0.657344 3_3:-72419401 None:intergenic
TCTGTGAAATGGCAGTTGAG+AGG 0.659471 3_3:+72417648 Msa0470330:intron
ACAATAGAATGGAATGTTGG+GGG 0.673943 3_3:+72418667 Msa0470330:CDS
TGAAATGGCAGTTGAGAGGG+TGG 0.680898 3_3:+72417652 Msa0470330:intron
AACGAGCGGATCAGTTACAA+GGG 0.682090 3_3:+72419250 Msa0470330:CDS
GATTAGCTGTTAAGTCACAG+TGG 0.723492 3_3:-72417311 None:intergenic
GTGGCATGTGAAACATGAAG+AGG 0.730865 3_3:+72416173 Msa0470330:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATATAATAAAA+TGG - chr3_3:72416423-72416442 None:intergenic 0.0%
!!! TTATTTATTTATTTATTTTA+TGG + chr3_3:72416438-72416457 Msa0470330:intron 0.0%
!! AAATAAATATAATAAAATGG+TGG - chr3_3:72416420-72416439 None:intergenic 10.0%
!! ATTGAATTTATAGTTATTAG+TGG + chr3_3:72418191-72418210 Msa0470330:intron 15.0%
!! TTGAATTTATAGTTATTAGT+GGG + chr3_3:72418192-72418211 Msa0470330:intron 15.0%
!!! ATTTAATAAACTTTTTACGA+GGG + chr3_3:72418218-72418237 Msa0470330:intron 15.0%
!!! TAAATCATTGTTTAAAATTG+TGG + chr3_3:72418407-72418426 Msa0470330:intron 15.0%
!! TTCTTGTAAAAATAAAATTG+TGG + chr3_3:72418482-72418501 Msa0470330:intron 15.0%
!!! ATCAATATATTTTCACAAAA+TGG - chr3_3:72418826-72418845 None:intergenic 15.0%
!! TATATAATCTTAAACAGTAA+GGG - chr3_3:72418874-72418893 None:intergenic 15.0%
!! GAAAAAGAAAAAGAAGATAA+TGG + chr3_3:72416148-72416167 Msa0470330:five_prime_UTR 20.0%
!!! AAAATGGTGGAAATTAAAAA+GGG - chr3_3:72416407-72416426 None:intergenic 20.0%
!!! TAAAATGGTGGAAATTAAAA+AGG - chr3_3:72416408-72416427 None:intergenic 20.0%
!! TTTACTACATTATAATCTGT+TGG + chr3_3:72416739-72416758 Msa0470330:intron 20.0%
!! TTACTACATTATAATCTGTT+GGG + chr3_3:72416740-72416759 Msa0470330:intron 20.0%
!!! TAGAAATCTTAATTTTGTAC+TGG - chr3_3:72416903-72416922 None:intergenic 20.0%
!! CAATAGTCAATTATTGTTAT+TGG + chr3_3:72417009-72417028 Msa0470330:intron 20.0%
!! TATCTGGTATATGTAAAAAT+TGG + chr3_3:72417990-72418009 Msa0470330:intron 20.0%
!!! CATTTAATAAACTTTTTACG+AGG + chr3_3:72418217-72418236 Msa0470330:intron 20.0%
!!! GACTTTTACTTTTTAAACTT+TGG - chr3_3:72418276-72418295 None:intergenic 20.0%
!! CTCAAAAAAATACAATAGAA+TGG + chr3_3:72418656-72418675 Msa0470330:CDS 20.0%
!! CTATATAATCTTAAACAGTA+AGG - chr3_3:72418875-72418894 None:intergenic 20.0%
!! TTATAATCACCAATTTAACA+GGG - chr3_3:72419148-72419167 None:intergenic 20.0%
!! ATTATAATCACCAATTTAAC+AGG - chr3_3:72419149-72419168 None:intergenic 20.0%
!! TAATACATTTGAAAGAAGAA+AGG - chr3_3:72419343-72419362 None:intergenic 20.0%
!! AAAGAAAAAGAAGATAATGG+TGG + chr3_3:72416151-72416170 Msa0470330:five_prime_UTR 25.0%
! CATAAAAGGGAATAATAGTT+TGG - chr3_3:72416282-72416301 None:intergenic 25.0%
!!! ATGATGGCTTTAACATAAAA+GGG - chr3_3:72416295-72416314 None:intergenic 25.0%
! AGTAGAAACAAAATATAGCA+AGG - chr3_3:72416473-72416492 None:intergenic 25.0%
! GAAACTGTGAAGAATAAAAA+GGG - chr3_3:72416518-72416537 None:intergenic 25.0%
! AGAAACTGTGAAGAATAAAA+AGG - chr3_3:72416519-72416538 None:intergenic 25.0%
! TTCTACATTAACAAAGAAGA+TGG - chr3_3:72416603-72416622 None:intergenic 25.0%
! ACATTCACATATGAGTAATT+AGG - chr3_3:72416694-72416713 None:intergenic 25.0%
! CAAAGAATGCAATTATAACA+AGG - chr3_3:72416799-72416818 None:intergenic 25.0%
! ATTGAAGTTATCACTGAATT+AGG + chr3_3:72416831-72416850 Msa0470330:intron 25.0%
! TTGAAGTTATCACTGAATTA+GGG + chr3_3:72416832-72416851 Msa0470330:intron 25.0%
!! TCAAATTGACTTTACAACTT+TGG + chr3_3:72417074-72417093 Msa0470330:intron 25.0%
!! TTTTTGTATCTTAGACTGTT+AGG + chr3_3:72417181-72417200 Msa0470330:intron 25.0%
! TACTAATTTCAATACCAAGT+AGG - chr3_3:72417395-72417414 None:intergenic 25.0%
! AACGGTTAAAGAAATAAATG+TGG + chr3_3:72417465-72417484 Msa0470330:intron 25.0%
! TACACAAGTTATTTGATACT+AGG + chr3_3:72417530-72417549 Msa0470330:intron 25.0%
! ACACAAGTTATTTGATACTA+GGG + chr3_3:72417531-72417550 Msa0470330:intron 25.0%
!!! AAACTTGTATTTTTGCACAA+AGG - chr3_3:72417591-72417610 None:intergenic 25.0%
!!! ATTATTTCTGCTGTATTGAT+AGG - chr3_3:72417867-72417886 None:intergenic 25.0%
! CAATCATGATATACTATATC+TGG + chr3_3:72417974-72417993 Msa0470330:intron 25.0%
! TATAACACACCAATACTATT+TGG - chr3_3:72418171-72418190 None:intergenic 25.0%
!! ATCTACTAGAGTACTAAAAA+AGG + chr3_3:72418315-72418334 Msa0470330:intron 25.0%
!! TCTACTAGAGTACTAAAAAA+GGG + chr3_3:72418316-72418335 Msa0470330:intron 25.0%
! GTACTTAAAGCAATTCAATA+TGG + chr3_3:72418564-72418583 Msa0470330:CDS 25.0%
!!! TGTATTTTTTTGAGCTAGAA+TGG - chr3_3:72418650-72418669 None:intergenic 25.0%
! AATACAATAGAATGGAATGT+TGG + chr3_3:72418664-72418683 Msa0470330:CDS 25.0%
! ATACAATAGAATGGAATGTT+GGG + chr3_3:72418665-72418684 Msa0470330:CDS 25.0%
! TTAGAAATCAAAGATGTTTC+AGG - chr3_3:72418996-72419015 None:intergenic 25.0%
!! ATTAAGTTTCTTCTGTTTTC+AGG + chr3_3:72419224-72419243 Msa0470330:intron 25.0%
!! TTAAGTTTCTTCTGTTTTCA+GGG + chr3_3:72419225-72419244 Msa0470330:intron 25.0%
! TCTTCTTTCAAATGTATTAC+TGG + chr3_3:72419344-72419363 Msa0470330:CDS 25.0%
! TTTTGTGTTCTCAGTTTGAT+TGG - chr3_3:72416081-72416100 None:intergenic 30.0%
TTACTGTTATGCATCTTCAA+TGG + chr3_3:72416205-72416224 Msa0470330:exon 30.0%
!! TTTGGTTGGTGAAAATGAAA+AGG - chr3_3:72416264-72416283 None:intergenic 30.0%
AAAGGGAATAATAGTTTGGT+TGG - chr3_3:72416278-72416297 None:intergenic 30.0%
!! GATGATGGCTTTAACATAAA+AGG - chr3_3:72416296-72416315 None:intergenic 30.0%
TAAACAAGTGAATTGTAGGA+AGG - chr3_3:72416365-72416384 None:intergenic 30.0%
CTCATAAACAAGTGAATTGT+AGG - chr3_3:72416369-72416388 None:intergenic 30.0%
CTACAATTCACTTGTTTATG+AGG + chr3_3:72416367-72416386 Msa0470330:CDS 30.0%
AAGAGTAACTTGAGTAAACA+TGG - chr3_3:72416660-72416679 None:intergenic 30.0%
GGCAATACAAGTAAAAATGT+TGG - chr3_3:72416778-72416797 None:intergenic 30.0%
! TCTCATAAGCACATTAGTTT+CGG - chr3_3:72416940-72416959 None:intergenic 30.0%
TAGACAGATCTTCAATTGAA+AGG - chr3_3:72416968-72416987 None:intergenic 30.0%
TCAATTGAAGATCTGTCTAT+AGG + chr3_3:72416969-72416988 Msa0470330:intron 30.0%
GAATTCAAGAAAGAGAAAGA+AGG - chr3_3:72417056-72417075 None:intergenic 30.0%
TACTGCTATGAGAAATAACA+AGG - chr3_3:72417101-72417120 None:intergenic 30.0%
!! TTTGAAGCTTCAAATTTTGC+CGG - chr3_3:72417219-72417238 None:intergenic 30.0%
! ATTTGAAGCTTCAAAACTGA+AGG + chr3_3:72417224-72417243 Msa0470330:CDS 30.0%
AAAACTGAAGGTTGTTCTAT+TGG + chr3_3:72417236-72417255 Msa0470330:CDS 30.0%
TAGATATCACATATTCTCCA+AGG + chr3_3:72417785-72417804 Msa0470330:CDS 30.0%
TAGGAAATGGATGCATTAAA+GGG - chr3_3:72417848-72417867 None:intergenic 30.0%
ATAGGAAATGGATGCATTAA+AGG - chr3_3:72417849-72417868 None:intergenic 30.0%
GCAGAAATAATATGAAAGCT+AGG + chr3_3:72417876-72417895 Msa0470330:intron 30.0%
TGAAATTGAAGTTACCAATG+TGG - chr3_3:72418040-72418059 None:intergenic 30.0%
ATGATTTAGATATGCTCTTC+AGG - chr3_3:72418395-72418414 None:intergenic 30.0%
TTGTTCTTGTATAGATTGCA+AGG + chr3_3:72418436-72418455 Msa0470330:intron 30.0%
! ATTGAATTGCTTTAAGTACC+TGG - chr3_3:72418563-72418582 None:intergenic 30.0%
AGCTAGAATGGAAATATACT+CGG - chr3_3:72418638-72418657 None:intergenic 30.0%
TACAATAGAATGGAATGTTG+GGG + chr3_3:72418666-72418685 Msa0470330:CDS 30.0%
TCACAAAATGGCTTAATGAA+AGG - chr3_3:72418814-72418833 None:intergenic 30.0%
ATCTTAAACAGTAAGGGATA+TGG - chr3_3:72418868-72418887 None:intergenic 30.0%
TTGACTGTGACAAAAGTAAA+AGG - chr3_3:72418952-72418971 None:intergenic 30.0%
ACAAAAAAACCACATTGTTG+AGG + chr3_3:72419065-72419084 Msa0470330:intron 30.0%
TCAGACAAGAGTAAACAAAA+AGG - chr3_3:72419205-72419224 None:intergenic 30.0%
CAAATGTATTACTGGTAACT+TGG + chr3_3:72419352-72419371 Msa0470330:CDS 30.0%
TGTCAAGTAAATGTGTTAAC+AGG + chr3_3:72419537-72419556 Msa0470330:three_prime_UTR 30.0%
AAGTAAATGTGTTAACAGGT+TGG + chr3_3:72419541-72419560 Msa0470330:three_prime_UTR 30.0%
GATAACTCATATCATTGAGT+GGG - chr3_3:72419574-72419593 None:intergenic 30.0%
TGATAACTCATATCATTGAG+TGG - chr3_3:72419575-72419594 None:intergenic 30.0%
AGGAGAAAGAAAAGTGATGT+GGG - chr3_3:72416106-72416125 None:intergenic 35.0%
AAGGAGAAAGAAAAGTGATG+TGG - chr3_3:72416107-72416126 None:intergenic 35.0%
GTTAAGACAGAGAAGAAAGA+AGG - chr3_3:72416126-72416145 None:intergenic 35.0%
! GAAAAAGAAGATAATGGTGG+TGG + chr3_3:72416154-72416173 Msa0470330:five_prime_UTR 35.0%
GGAATTAGTAGTAGTGATTG+AGG - chr3_3:72416339-72416358 None:intergenic 35.0%
! CACTTGTTTATGAGGTATTC+AGG + chr3_3:72416375-72416394 Msa0470330:intron 35.0%
! TATGAGTGATGACTTCCTTT+TGG + chr3_3:72416868-72416887 Msa0470330:intron 35.0%
! CTCATAAGCACATTAGTTTC+GGG - chr3_3:72416939-72416958 None:intergenic 35.0%
ATTAGCTGTTAAGTCACAGT+GGG - chr3_3:72417313-72417332 None:intergenic 35.0%
! CTGCTCTAATTTGATGACAT+TGG - chr3_3:72417352-72417371 None:intergenic 35.0%
CAATGTCATCAAATTAGAGC+AGG + chr3_3:72417350-72417369 Msa0470330:CDS 35.0%
TTCAATACCAAGTAGGCAAA+AGG - chr3_3:72417388-72417407 None:intergenic 35.0%
CTACTAATGAACACCTTATG+TGG - chr3_3:72417565-72417584 None:intergenic 35.0%
! CACATAAGGTGTTCATTAGT+AGG + chr3_3:72417563-72417582 Msa0470330:intron 35.0%
TGACAAAGCAATGAACATGT+AGG - chr3_3:72417731-72417750 None:intergenic 35.0%
ATTCTCCAAGGAAATGACTT+TGG + chr3_3:72417797-72417816 Msa0470330:CDS 35.0%
ACATACCAAAGTCATTTCCT+TGG - chr3_3:72417805-72417824 None:intergenic 35.0%
! TCTGCTGTATTGATAGGAAA+TGG - chr3_3:72417861-72417880 None:intergenic 35.0%
! TGAGGCTTAAGTAGAAGTTT+TGG - chr3_3:72417945-72417964 None:intergenic 35.0%
TCATGATTGCACTTCATATG+AGG - chr3_3:72417963-72417982 None:intergenic 35.0%
! ATGTCTCTCTTTTCTCTTGT+GGG + chr3_3:72418143-72418162 Msa0470330:intron 35.0%
CTCTTAGTAGCGAATTCTTA+AGG + chr3_3:72418358-72418377 Msa0470330:intron 35.0%
TTAGTAGCGAATTCTTAAGG+AGG + chr3_3:72418361-72418380 Msa0470330:intron 35.0%
CCACGTGTCATAATACATTT+AGG - chr3_3:72418518-72418537 None:intergenic 35.0%
CCTAAATGTATTATGACACG+TGG + chr3_3:72418515-72418534 Msa0470330:intron 35.0%
AATGTATTATGACACGTGGT+TGG + chr3_3:72418519-72418538 Msa0470330:intron 35.0%
ACTATAGAATCCAGCAATTC+TGG - chr3_3:72418615-72418634 None:intergenic 35.0%
ACAATAGAATGGAATGTTGG+GGG + chr3_3:72418667-72418686 Msa0470330:CDS 35.0%
GATGCAATGGAGGTAATATT+AGG + chr3_3:72418699-72418718 Msa0470330:intron 35.0%
GAAATCAAAGATGTTTCAGG+AGG - chr3_3:72418993-72419012 None:intergenic 35.0%
CTAATCTGACCCTGTTAAAT+TGG + chr3_3:72419136-72419155 Msa0470330:intron 35.0%
GTAAACAAAAAGGCAAGCAA+AGG - chr3_3:72419195-72419214 None:intergenic 35.0%
! GCAATTTTACATTGTCCTCT+TGG - chr3_3:72419462-72419481 None:intergenic 35.0%
AGCATATTTCTTGTGCACAA+AGG + chr3_3:72419487-72419506 Msa0470330:three_prime_UTR 35.0%
! CTCAGTTTGATTGGTTCATG+TGG - chr3_3:72416072-72416091 None:intergenic 40.0%
AGTAGTAGTGATTGAGGAAG+AGG - chr3_3:72416333-72416352 None:intergenic 40.0%
AAGTGAATTGTAGGAAGGAG+TGG - chr3_3:72416360-72416379 None:intergenic 40.0%
AAACACAATGCTGGGTCTTT+GGG - chr3_3:72416577-72416596 None:intergenic 40.0%
AAAACACAATGCTGGGTCTT+TGG - chr3_3:72416578-72416597 None:intergenic 40.0%
GATGGTCAAAACACAATGCT+GGG - chr3_3:72416585-72416604 None:intergenic 40.0%
AGATGGTCAAAACACAATGC+TGG - chr3_3:72416586-72416605 None:intergenic 40.0%
CATGGAATTTCACATGCACA+TGG - chr3_3:72416642-72416661 None:intergenic 40.0%
!!! TGATGACTTCCTTTTGGTTC+TGG + chr3_3:72416874-72416893 Msa0470330:intron 40.0%
TACTGGATTCCAGAACCAAA+AGG - chr3_3:72416886-72416905 None:intergenic 40.0%
ATCTTAGACTGTTAGGCTCT+TGG + chr3_3:72417188-72417207 Msa0470330:intron 40.0%
TCTTAGACTGTTAGGCTCTT+GGG + chr3_3:72417189-72417208 Msa0470330:intron 40.0%
TGGGATAGAATGTAGGTTCT+TGG - chr3_3:72417294-72417313 None:intergenic 40.0%
! GATTAGCTGTTAAGTCACAG+TGG - chr3_3:72417314-72417333 None:intergenic 40.0%
! GTCTTTACCTTTTGCCTACT+TGG + chr3_3:72417378-72417397 Msa0470330:intron 40.0%
AAATGCTGACAAGTGCCTTT+AGG + chr3_3:72417440-72417459 Msa0470330:intron 40.0%
AATGCTGACAAGTGCCTTTA+GGG + chr3_3:72417441-72417460 Msa0470330:intron 40.0%
TTCTTTAACCGTTGCCCTAA+AGG - chr3_3:72417458-72417477 None:intergenic 40.0%
AATGAACACCTTATGTGGTC+AGG - chr3_3:72417560-72417579 None:intergenic 40.0%
CATTTCACAGAAGGAATGGA+AGG - chr3_3:72417639-72417658 None:intergenic 40.0%
CTTCCATTCCTTCTGTGAAA+TGG + chr3_3:72417637-72417656 Msa0470330:intron 40.0%
AGGATGATGTTGTAGCTGAA+TGG + chr3_3:72417682-72417701 Msa0470330:CDS 40.0%
CATGTTCATTGCTTTGTCAG+TGG + chr3_3:72417732-72417751 Msa0470330:CDS 40.0%
AAAGCTAGGACTGATCTAAG+AGG + chr3_3:72417890-72417909 Msa0470330:intron 40.0%
! GCAAATTAGAGCATCCACAT+TGG + chr3_3:72418023-72418042 Msa0470330:intron 40.0%
CTTCAATTTCAAACCCCGTT+AGG + chr3_3:72418049-72418068 Msa0470330:intron 40.0%
CTCCAAGTACCTCATAAGTT+GGG - chr3_3:72418077-72418096 None:intergenic 40.0%
TCTCCAAGTACCTCATAAGT+TGG - chr3_3:72418078-72418097 None:intergenic 40.0%
!! GATGGAAAGGAGTACCTATT+GGG + chr3_3:72418100-72418119 Msa0470330:intron 40.0%
TACAAGGCTTTCTTCCCAAT+AGG - chr3_3:72418117-72418136 None:intergenic 40.0%
! GATGTCTCTCTTTTCTCTTG+TGG + chr3_3:72418142-72418161 Msa0470330:intron 40.0%
TTGTGGGCTCCAAATAGTAT+TGG + chr3_3:72418159-72418178 Msa0470330:intron 40.0%
! AGGGTTACTTTAGAGAGATG+TGG + chr3_3:72418237-72418256 Msa0470330:intron 40.0%
TAGAGAGATGTGGTGCTTAT+TGG + chr3_3:72418247-72418266 Msa0470330:intron 40.0%
AAAAGGGTTGCTACATCAAG+AGG + chr3_3:72418332-72418351 Msa0470330:intron 40.0%
!! ACGTGGTTGGATTCTTGTTT+TGG + chr3_3:72418532-72418551 Msa0470330:intron 40.0%
!!! CGTGGTTGGATTCTTGTTTT+GGG + chr3_3:72418533-72418552 Msa0470330:intron 40.0%
!! TAGCTTGTTCCTCAACAATG+TGG - chr3_3:72419077-72419096 None:intergenic 40.0%
GAAGAAAGGCAAAAAGAGCT+TGG - chr3_3:72419329-72419348 None:intergenic 40.0%
! TTCTAGCTGAGGAAAGAATC+GGG - chr3_3:72419393-72419412 None:intergenic 40.0%
! GTTCTAGCTGAGGAAAGAAT+CGG - chr3_3:72419394-72419413 None:intergenic 40.0%
TCTTTCCTCAGCTAGAACTT+TGG + chr3_3:72419396-72419415 Msa0470330:exon 40.0%
CTTTCCTCAGCTAGAACTTT+GGG + chr3_3:72419397-72419416 Msa0470330:exon 40.0%
GTGGCATGTGAAACATGAAG+AGG + chr3_3:72416173-72416192 Msa0470330:five_prime_UTR 45.0%
!! GAGGAGCATCTGAAAGATGA+TGG - chr3_3:72416311-72416330 None:intergenic 45.0%
AGTAGTGATTGAGGAAGAGG+AGG - chr3_3:72416330-72416349 None:intergenic 45.0%
! GAAGCTTCAAATTTTGCCGG+AGG - chr3_3:72417216-72417235 None:intergenic 45.0%
GTCACAGTGGGATAGAATGT+AGG - chr3_3:72417301-72417320 None:intergenic 45.0%
! AAGGCACTTGTCAGCATTTG+CGG - chr3_3:72417439-72417458 None:intergenic 45.0%
! CTGCCATTTCACAGAAGGAA+TGG - chr3_3:72417643-72417662 None:intergenic 45.0%
! CTCAACTGCCATTTCACAGA+AGG - chr3_3:72417648-72417667 None:intergenic 45.0%
TCTGTGAAATGGCAGTTGAG+AGG + chr3_3:72417648-72417667 Msa0470330:intron 45.0%
CTGTGAAATGGCAGTTGAGA+GGG + chr3_3:72417649-72417668 Msa0470330:intron 45.0%
GTTGAGAGGGTGGTATATGA+AGG + chr3_3:72417662-72417681 Msa0470330:intron 45.0%
TAAACTCAGCAGCTAGATCC+AGG - chr3_3:72417767-72417786 None:intergenic 45.0%
! TCATAAGTTGGGTGCCTAAC+GGG - chr3_3:72418066-72418085 None:intergenic 45.0%
! CTCATAAGTTGGGTGCCTAA+CGG - chr3_3:72418067-72418086 None:intergenic 45.0%
! CACCCAACTTATGAGGTACT+TGG + chr3_3:72418072-72418091 Msa0470330:intron 45.0%
!! CGATGGAAAGGAGTACCTAT+TGG + chr3_3:72418099-72418118 Msa0470330:intron 45.0%
AGAGAGACATCAGCTGTACA+AGG - chr3_3:72418133-72418152 None:intergenic 45.0%
!!! ATTCTTGTTTTGGGCATGCC+AGG + chr3_3:72418542-72418561 Msa0470330:intron 45.0%
ACCTCCATTGCATCCTTTAG+AGG - chr3_3:72418693-72418712 None:intergenic 45.0%
CTAGTTCATGTCACTCTTGC+TGG + chr3_3:72419094-72419113 Msa0470330:intron 45.0%
!! CTGTTTTCAGGGAAAACGAG+CGG + chr3_3:72419236-72419255 Msa0470330:intron 45.0%
AAACGAGCGGATCAGTTACA+AGG + chr3_3:72419249-72419268 Msa0470330:CDS 45.0%
AACGAGCGGATCAGTTACAA+GGG + chr3_3:72419250-72419269 Msa0470330:CDS 45.0%
AGATCGTCCTCCTGAAAAGT+TGG + chr3_3:72419284-72419303 Msa0470330:CDS 45.0%
GATCGTCCTCCTGAAAAGTT+GGG + chr3_3:72419285-72419304 Msa0470330:CDS 45.0%
! ATTGGGCTTCCCAACTTTTC+AGG - chr3_3:72419297-72419316 None:intergenic 45.0%
GAGCTTGGAAGTTGGACATT+GGG - chr3_3:72419314-72419333 None:intergenic 45.0%
AGAGCTTGGAAGTTGGACAT+TGG - chr3_3:72419315-72419334 None:intergenic 45.0%
GGCAAAAAGAGCTTGGAAGT+TGG - chr3_3:72419322-72419341 None:intergenic 45.0%
CTTGCAAGAATGACTCCAAG+AGG + chr3_3:72419444-72419463 Msa0470330:three_prime_UTR 45.0%
!! GACAAGTGCCTTTAGGGCAA+CGG + chr3_3:72417447-72417466 Msa0470330:intron 50.0%
! TAGGGTGTCCTGACCACATA+AGG + chr3_3:72417549-72417568 Msa0470330:intron 50.0%
TGAAATGGCAGTTGAGAGGG+TGG + chr3_3:72417652-72417671 Msa0470330:intron 50.0%
! CATAAGTTGGGTGCCTAACG+GGG - chr3_3:72418065-72418084 None:intergenic 50.0%
CGTTAGGCACCCAACTTATG+AGG + chr3_3:72418065-72418084 Msa0470330:intron 50.0%
! ATGAGGTACTTGGAGAGCGA+TGG + chr3_3:72418082-72418101 Msa0470330:intron 50.0%
GTACTTGGAGAGCGATGGAA+AGG + chr3_3:72418087-72418106 Msa0470330:intron 50.0%
CCAGCAATTCTGGATGCTCT+TGG - chr3_3:72418605-72418624 None:intergenic 50.0%
!! CCAAGAGCATCCAGAATTGC+TGG + chr3_3:72418602-72418621 Msa0470330:CDS 50.0%
! GCCTCTAAAGGATGCAATGG+AGG + chr3_3:72418689-72418708 Msa0470330:CDS 50.0%
TCCTCAGCTAGAACTTTGGG+TGG + chr3_3:72419400-72419419 Msa0470330:exon 50.0%
! ACCACCCAAAGTTCTAGCTG+AGG - chr3_3:72419404-72419423 None:intergenic 50.0%
TGTTAGGCTCTTGGGTCCTC+CGG + chr3_3:72417197-72417216 Msa0470330:CDS 55.0%
GCAGCTAGATCCAGGAAGGT+GGG - chr3_3:72417759-72417778 None:intergenic 55.0%
AGCAGCTAGATCCAGGAAGG+TGG - chr3_3:72417760-72417779 None:intergenic 55.0%
CTCAGCAGCTAGATCCAGGA+AGG - chr3_3:72417763-72417782 None:intergenic 55.0%
AAAGCCTAGCTCGAGTCTGC+GGG - chr3_3:72417920-72417939 None:intergenic 55.0%
CAAAGCCTAGCTCGAGTCTG+CGG - chr3_3:72417921-72417940 None:intergenic 55.0%
GGAATGTTGGGGGCCTCTAA+AGG + chr3_3:72418677-72418696 Msa0470330:CDS 55.0%
! GGGGCCTCTAAAGGATGCAA+TGG + chr3_3:72418686-72418705 Msa0470330:CDS 55.0%
!! GGGCTTCCCAACTTTTCAGG+AGG - chr3_3:72419294-72419313 None:intergenic 55.0%
TGTCAGTGGTCCCACCTTCC+TGG + chr3_3:72417746-72417765 Msa0470330:CDS 60.0%
TACTCCCGCAGACTCGAGCT+AGG + chr3_3:72417913-72417932 Msa0470330:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72416067 72419608 72416067 ID=Msa0470330;Name=Msa0470330
chr3_3 mRNA 72416067 72419608 72416067 ID=Msa0470330-mRNA-1;Parent=Msa0470330;Name=Msa0470330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=157|1|1|1|1|1|5|198|269
chr3_3 exon 72416067 72416388 72416067 ID=Msa0470330-mRNA-1:exon:18035;Parent=Msa0470330-mRNA-1
chr3_3 exon 72417195 72417371 72417195 ID=Msa0470330-mRNA-1:exon:18036;Parent=Msa0470330-mRNA-1
chr3_3 exon 72417663 72417818 72417663 ID=Msa0470330-mRNA-1:exon:18037;Parent=Msa0470330-mRNA-1
chr3_3 exon 72418564 72418710 72418564 ID=Msa0470330-mRNA-1:exon:18038;Parent=Msa0470330-mRNA-1
chr3_3 exon 72419246 72419608 72419246 ID=Msa0470330-mRNA-1:exon:18039;Parent=Msa0470330-mRNA-1
chr3_3 five_prime_UTR 72416067 72416223 72416067 ID=Msa0470330-mRNA-1:five_prime_utr;Parent=Msa0470330-mRNA-1
chr3_3 CDS 72416224 72416388 72416224 ID=Msa0470330-mRNA-1:cds;Parent=Msa0470330-mRNA-1
chr3_3 CDS 72417195 72417371 72417195 ID=Msa0470330-mRNA-1:cds;Parent=Msa0470330-mRNA-1
chr3_3 CDS 72417663 72417818 72417663 ID=Msa0470330-mRNA-1:cds;Parent=Msa0470330-mRNA-1
chr3_3 CDS 72418564 72418710 72418564 ID=Msa0470330-mRNA-1:cds;Parent=Msa0470330-mRNA-1
chr3_3 CDS 72419246 72419410 72419246 ID=Msa0470330-mRNA-1:cds;Parent=Msa0470330-mRNA-1
chr3_3 three_prime_UTR 72419411 72419608 72419411 ID=Msa0470330-mRNA-1:three_prime_utr;Parent=Msa0470330-mRNA-1
Gene Sequence

>Msa0470330

ATGGCATCATCATTATGTTATAATAATCTTTACAATGCCTTTTCATTTTCACCAACCAAACTATTATTCCCTTTTATGTTAAAGCCATCATCTTTCAGATGCTCCTCCTCTTCCTCAATCACTACTACTAATTCCACTCCTTCCTACAATTCACTTGTTTATGAGACTGTTAGGCTCTTGGGTCCTCCGGCAAAATTTGAAGCTTCAAAACTGAAGGTTGTTCTATTGGAAGATCAGATTAACAGATATGCAAGTATTATTCCAAGAACCTACATTCTATCCCACTGTGACTTAACAGCTAATCTCACTTTAGCTGTTTCCAATGTCATCAAATTAGAGCAGTTGAGAGGGTGGTATATGAAGGATGATGTTGTAGCTGAATGGAAGAAAGTGAAAAATGAAATGTGCCTACATGTTCATTGCTTTGTCAGTGGTCCCACCTTCCTGGATCTAGCTGCTGAGTTTAGATATCACATATTCTCCAAGGAAATGACTTTGGTACTTAAAGCAATTCAATATGGAGATTCTGTACTTTTCCAAGAGCATCCAGAATTGCTGGATTCTATAGTCCGAGTATATTTCCATTCTAGCTCAAAAAAATACAATAGAATGGAATGTTGGGGGCCTCTAAAGGATGCAATGGAGGGAAAACGAGCGGATCAGTTACAAGGGTTGATAAACAGAGATCGTCCTCCTGAAAAGTTGGGAAGCCCAATGTCCAACTTCCAAGCTCTTTTTGCCTTTCTTCTTTCAAATGTATTACTGGTAACTTGGTTGATTTGTTTATATCCCGATTCTTTCCTCAGCTAG

Protein sequence

>Msa0470330

MASSLCYNNLYNAFSFSPTKLLFPFMLKPSSFRCSSSSSITTTNSTPSYNSLVYETVRLLGPPAKFEASKLKVVLLEDQINRYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLRGWYMKDDVVAEWKKVKNEMCLHVHCFVSGPTFLDLAAEFRYHIFSKEMTLVLKAIQYGDSVLFQEHPELLDSIVRVYFHSSSKKYNRMECWGPLKDAMEGKRADQLQGLINRDRPPEKLGSPMSNFQALFAFLLSNVLLVTWLICLYPDSFLS*