AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350550 MtrunA17_Chr1g0182971 88.557 201 7 4 1 199 1 187 6.58e-104 297
Msa1350550 MtrunA17_Chr3g0117411 44.037 109 47 2 86 194 22 116 1.21e-22 88.2
Msa1350550 MtrunA17_Chr7g0228311 45.872 109 45 2 86 194 7 101 4.52e-22 86.3
Msa1350550 MtrunA17_Chr3g0117391 41.593 113 50 3 86 196 25 123 1.72e-21 85.5
Msa1350550 MtrunA17_Chr2g0299021 35.897 117 61 2 73 189 74 176 1.55e-19 82.0
Msa1350550 MtrunA17_Chr5g0404751 37.143 105 52 2 85 189 36 126 5.98e-17 73.6
Msa1350550 MtrunA17_Chr4g0066791 34.513 113 59 3 83 194 2 100 7.65e-13 62.0
Msa1350550 MtrunA17_Chr4g0066801 34.513 113 59 3 83 194 2 100 7.65e-13 62.0
Msa1350550 MtrunA17_Chr4g0066811 34.513 113 59 3 83 194 2 100 7.65e-13 62.0
Msa1350550 MtrunA17_Chr7g0224091 36.283 113 57 3 83 194 23 121 1.74e-12 61.6
Msa1350550 MtrunA17_Chr7g0268711 31.776 107 59 2 83 189 2 94 5.99e-12 59.7
Msa1350550 MtrunA17_Chr1g0195951 33.036 112 61 2 83 194 2 99 7.30e-12 59.7
Msa1350550 MtrunA17_Chr7g0222541 34.513 113 59 3 83 194 31 129 1.43e-11 59.7
Msa1350550 MtrunA17_Chr1g0195971 30.357 112 64 2 83 194 2 99 1.61e-11 58.5
Msa1350550 MtrunA17_Chr7g0222491 33.628 113 60 3 83 194 31 129 1.93e-11 59.3
Msa1350550 MtrunA17_Chr2g0286251 32.143 112 62 2 83 194 2 99 3.24e-11 57.8
Msa1350550 MtrunA17_Chr7g0268761 36.275 102 51 2 93 194 12 99 3.79e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350550 AT4G28730.1 65.833 120 28 1 77 196 65 171 1.27e-56 177
Msa1350550 AT2G20270.1 62.931 116 30 1 81 196 74 176 1.49e-48 156
Msa1350550 AT2G20270.2 51.049 143 30 2 81 196 74 203 3.30e-42 141
Msa1350550 AT4G28730.2 75.000 76 19 0 77 152 65 140 8.45e-42 138
Msa1350550 AT5G63030.1 44.037 109 47 2 86 194 23 117 1.01e-21 86.3
Msa1350550 AT5G20500.1 36.691 139 60 4 59 197 21 131 4.22e-21 85.1
Msa1350550 AT5G40370.1 44.037 109 47 2 86 194 7 101 1.21e-20 83.2
Msa1350550 AT5G40370.2 43.434 99 42 2 96 194 42 126 1.06e-16 73.6
Msa1350550 AT1G77370.1 34.906 106 55 2 85 190 37 128 5.60e-16 71.6
Msa1350550 AT2G47870.1 31.481 108 59 3 83 189 2 95 4.63e-15 68.6
Msa1350550 AT1G77370.2 29.008 131 55 2 85 190 37 154 3.28e-13 64.7
Msa1350550 AT3G62950.1 30.088 113 64 3 83 194 2 100 9.92e-13 62.4
Msa1350550 AT5G18600.1 33.036 112 61 2 83 194 2 99 4.60e-12 60.5

Find 81 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCAAACCACAGATTTATT+AGG 0.183201 tig0011622:-102006 None:intergenic
TCCACAATTGCAGAAGTTAT+TGG 0.236945 tig0011622:+99355 Msa1350550:CDS
TCGTGTAATGATTCTTAAAT+TGG 0.245100 tig0011622:+102074 Msa1350550:three_prime_UTR
ACTGTCCCAAATGTCTTTAT+TGG 0.269990 tig0011622:+99398 Msa1350550:CDS
TGCTTACCAATAAAGACATT+TGG 0.309384 tig0011622:-99404 None:intergenic
GGTCATTGAATTGGACGAAT+TGG 0.311156 tig0011622:+99227 Msa1350550:CDS
TCTTCTTCTTCTCCTTCTTT+CGG 0.329684 tig0011622:+99078 Msa1350550:CDS
CCTGCAATGAAGAAAACTTT+AGG 0.335075 tig0011622:-101290 None:intergenic
TCAACCATTGGTCATTGAAT+TGG 0.339849 tig0011622:+99218 Msa1350550:CDS
CTCAAACCACAGATTTATTA+GGG 0.347149 tig0011622:-102005 None:intergenic
ATGGGTGAAGGAGTGGAAAT+GGG 0.349172 tig0011622:-98973 None:intergenic
GATGGGTGAAGGAGTGGAAA+TGG 0.372694 tig0011622:-98974 None:intergenic
GCTTACCAATAAAGACATTT+GGG 0.379345 tig0011622:-99403 None:intergenic
AGCAGAAGACTTTAGGTGAT+TGG 0.386344 tig0011622:+98786 Msa1350550:five_prime_UTR
AAATTGGTCATTTAAATGCC+TGG 0.390626 tig0011622:+102090 Msa1350550:three_prime_UTR
CCTAATAAATCTGTGGTTTG+AGG 0.394613 tig0011622:+102006 Msa1350550:three_prime_UTR
GTTCATCAATTTCATTTGCC+TGG 0.396422 tig0011622:-102157 None:intergenic
GATTTAGAATAAACAACAAC+AGG 0.399918 tig0011622:-99144 None:intergenic
TCCAATAACTTCTGCAATTG+TGG 0.404965 tig0011622:-99356 None:intergenic
AACCGGATCAGATTCCCTTT+AGG 0.406920 tig0011622:-101919 None:intergenic
GTCATTGAATTGGACGAATT+GGG 0.409560 tig0011622:+99228 Msa1350550:CDS
CAGAACAGGAAAGTGAATAA+TGG 0.411370 tig0011622:+98849 Msa1350550:exon
GGTGTAGAAAGTGAAAATTT+TGG 0.420415 tig0011622:-98950 None:intergenic
AGACATTTGGGACAGTGTAT+TGG 0.422317 tig0011622:-99391 None:intergenic
CTAATAAATCTGTGGTTTGA+GGG 0.423527 tig0011622:+102007 Msa1350550:three_prime_UTR
CTGCAATGAAGAAAACTTTA+GGG 0.425228 tig0011622:-101289 None:intergenic
ATCTGTGGTTTGAGTGCTCC+AGG 0.428536 tig0011622:+102139 Msa1350550:three_prime_UTR
CAACACATTGGTGGCTGTAC+AGG 0.429960 tig0011622:+101317 Msa1350550:CDS
TATTCATTCATTCACAGAAC+AGG 0.431362 tig0011622:+98835 Msa1350550:five_prime_UTR
CAATATTACTCTCATCCTAA+AGG 0.442708 tig0011622:+101904 Msa1350550:three_prime_UTR
AATATTACTCTCATCCTAAA+GGG 0.445240 tig0011622:+101905 Msa1350550:three_prime_UTR
TTGTTGTTTATTCTAAATCC+TGG 0.449421 tig0011622:+99148 Msa1350550:CDS
GTGAATAATGGCTTCATCAA+TGG 0.451455 tig0011622:+98861 Msa1350550:exon
GTATTAACTCAGTGCTTTCA+AGG 0.458311 tig0011622:-101962 None:intergenic
TTCTTACAGTGTTAATTCCC+AGG 0.459473 tig0011622:-102108 None:intergenic
CAGATACACTTAAGCTGTAC+AGG 0.473714 tig0011622:+101816 Msa1350550:intron
TCGAGACGAGAGCCGAAAGA+AGG 0.476392 tig0011622:-99090 None:intergenic
CTTCTGATAGCAGAGTTTCA+AGG 0.477656 tig0011622:-101847 None:intergenic
TTCTGTGAATGAATGAATAA+TGG 0.478945 tig0011622:-98831 None:intergenic
GAGGATGAAGAAGAAGAAGA+AGG 0.484233 tig0011622:-98922 None:intergenic
AATTGGTCATTTAAATGCCT+GGG 0.489244 tig0011622:+102091 Msa1350550:three_prime_UTR
ATCCTAAAGGGAATCTGATC+CGG 0.491393 tig0011622:+101917 Msa1350550:three_prime_UTR
TGATGCATTGGTGATGATGA+TGG 0.500169 tig0011622:-98992 None:intergenic
GGAGAAGAAGAAGAGGGAGA+AGG 0.503916 tig0011622:-99069 None:intergenic
AGACATGGCTCGAGGGAAAG+TGG 0.505541 tig0011622:-99028 None:intergenic
TTCTGCAATTGTGGACCTTG+TGG 0.506196 tig0011622:-99347 None:intergenic
CTCAGAGCAATAAGAGCACC+AGG 0.519483 tig0011622:-99166 None:intergenic
AAGTTATTGGAAAGAATCAC+TGG 0.522538 tig0011622:+99368 Msa1350550:CDS
TATATGCGACAAATTGCAAC+CGG 0.524919 tig0011622:-101936 None:intergenic
GAAAGAAGGAGAAGAAGAAG+AGG 0.525353 tig0011622:-99076 None:intergenic
TGGGTGAAGGAGTGGAAATG+GGG 0.529038 tig0011622:-98972 None:intergenic
ATTGCAGGTGGCCAACACAT+TGG 0.560668 tig0011622:+101305 Msa1350550:CDS
TGCGCGGCGTGATGATGCAT+TGG 0.565062 tig0011622:-99004 None:intergenic
GATGATGATGGGTGAAGGAG+TGG 0.565535 tig0011622:-98980 None:intergenic
AATAATGGTCGAACGAAGGA+AGG 0.570467 tig0011622:-98816 None:intergenic
GACATGGCTCGAGGGAAAGT+GGG 0.576041 tig0011622:-99027 None:intergenic
GTAAGAACTAATTAGATCTG+TGG 0.576378 tig0011622:+102124 Msa1350550:three_prime_UTR
GAAGAGGCTCATAAAACAGA+AGG 0.576814 tig0011622:-102227 None:intergenic
GAAACTCGGTACTCAACCAT+TGG 0.578067 tig0011622:+99206 Msa1350550:CDS
TATTAACTCAGTGCTTTCAA+GGG 0.579305 tig0011622:-101961 None:intergenic
TCGTCCAATTCAATGACCAA+TGG 0.582756 tig0011622:-99222 None:intergenic
ATTATGAGATATAAAAGAAG+AGG 0.583284 tig0011622:-102243 None:intergenic
CTCGAGGGAAAGTGGGTGCG+CGG 0.586414 tig0011622:-99020 None:intergenic
AAAGAAGGAGAAGAAGAAGA+GGG 0.596305 tig0011622:-99075 None:intergenic
GGGTGAAGGAGTGGAAATGG+GGG 0.597848 tig0011622:-98971 None:intergenic
ACACTTAAGCTGTACAGGAA+AGG 0.605615 tig0011622:+101821 Msa1350550:CDS
AAATCCTTGTTCAAGAAACT+CGG 0.607350 tig0011622:+99192 Msa1350550:CDS
AGTACCGAGTTTCTTGAACA+AGG 0.611087 tig0011622:-99196 None:intergenic
GCAGGTGGCCAACACATTGG+TGG 0.613270 tig0011622:+101308 Msa1350550:CDS
AAGAAGAAGACATGGCTCGA+GGG 0.614920 tig0011622:-99035 None:intergenic
GAAGAAGAAGACATGGCTCG+AGG 0.618686 tig0011622:-99036 None:intergenic
TTTCTGTGTTTAGGTCCACA+AGG 0.618825 tig0011622:+99332 Msa1350550:intron
ATTAGACCCTAATAAATCTG+TGG 0.622082 tig0011622:+101999 Msa1350550:three_prime_UTR
CTGGTGCTCTTATTGCTCTG+AGG 0.633125 tig0011622:+99167 Msa1350550:CDS
GATGCATTGGTGATGATGAT+GGG 0.639376 tig0011622:-98991 None:intergenic
TTGGTGATGATGATGGGTGA+AGG 0.644107 tig0011622:-98985 None:intergenic
AAGACTTTAGGTGATTGGTA+CGG 0.645409 tig0011622:+98791 Msa1350550:five_prime_UTR
CTGTACAGCCACCAATGTGT+TGG 0.647816 tig0011622:-101316 None:intergenic
AATGAATAATGGTCGAACGA+AGG 0.652672 tig0011622:-98820 None:intergenic
GGATGAGAGTAATATTGACA+AGG 0.673752 tig0011622:-101898 None:intergenic
ATTTAGAATAAACAACAACA+GGG 0.680559 tig0011622:-99143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATTATACTATATAT+AGG + tig0011622:99994-100013 Msa1350550:intron 10.0%
!! TGAAAATTATACTATATATA+GGG + tig0011622:99995-100014 Msa1350550:intron 10.0%
!!! AATTTAAAACTTTCTTTTTT+TGG + tig0011622:101042-101061 Msa1350550:intron 10.0%
!! TTGGATAAAAAAGTTTAATT+AGG + tig0011622:99673-99692 Msa1350550:intron 15.0%
!! AATAAATTGAATAAAGCTTA+AGG + tig0011622:99793-99812 Msa1350550:intron 15.0%
!!! ATTTAAAATTTAGGTTTTTG+TGG - tig0011622:100350-100369 None:intergenic 15.0%
!! CAAATATAGTAATATTACAT+TGG + tig0011622:100974-100993 Msa1350550:intron 15.0%
!! AAAAGATAAAATTAAATGCA+GGG - tig0011622:101247-101266 None:intergenic 15.0%
!!! ATTTAGAATAAACAACAACA+GGG - tig0011622:99146-99165 None:intergenic 20.0%
!! TAGGATTAATATTTGACAAA+AGG - tig0011622:99629-99648 None:intergenic 20.0%
!!! TAAACTTTTTTATCCAAACA+AGG - tig0011622:99670-99689 None:intergenic 20.0%
!! GAAATCCAACTTAAAAAATT+AGG + tig0011622:100814-100833 Msa1350550:intron 20.0%
!! AAGAATTGAAATACTATATC+AGG - tig0011622:100884-100903 None:intergenic 20.0%
!! TTATATTAATCCATAGTTCA+AGG - tig0011622:100913-100932 None:intergenic 20.0%
!!! TTGAACTATGGATTAATATA+AGG + tig0011622:100912-100931 Msa1350550:intron 20.0%
!!! TGAACTATGGATTAATATAA+GGG + tig0011622:100913-100932 Msa1350550:intron 20.0%
!! CAAAAGATAAAATTAAATGC+AGG - tig0011622:101248-101267 None:intergenic 20.0%
!! AATGATTGATTATTTAACTG+AGG + tig0011622:101364-101383 Msa1350550:intron 20.0%
!! ATGATTGATTATTTAACTGA+GGG + tig0011622:101365-101384 Msa1350550:intron 20.0%
!!! TTTCACTGTTAAGATTTTTA+TGG - tig0011622:101750-101769 None:intergenic 20.0%
!! ATTATGAGATATAAAAGAAG+AGG - tig0011622:102246-102265 None:intergenic 20.0%
! TTCTGTGAATGAATGAATAA+TGG - tig0011622:98834-98853 None:intergenic 25.0%
!! GATTTAGAATAAACAACAAC+AGG - tig0011622:99147-99166 None:intergenic 25.0%
!!! TTGTTGTTTATTCTAAATCC+TGG + tig0011622:99148-99167 Msa1350550:CDS 25.0%
! GCAATAATTGAGGTTAATTA+GGG - tig0011622:99266-99285 None:intergenic 25.0%
! AGCAATAATTGAGGTTAATT+AGG - tig0011622:99267-99286 None:intergenic 25.0%
! ATCCATGAATAAATTTGCAA+TGG - tig0011622:99292-99311 None:intergenic 25.0%
!! CTTAATTGATTTCTGTGTTT+AGG + tig0011622:99323-99342 Msa1350550:intron 25.0%
! TTAATCCTAATTTAAACCCA+AGG + tig0011622:99640-99659 Msa1350550:intron 25.0%
!!! ATATTTTAGTCATGCTGATT+AGG + tig0011622:99896-99915 Msa1350550:intron 25.0%
! TGATTAGGTTATCATAACTT+AGG + tig0011622:99911-99930 Msa1350550:intron 25.0%
! GATATATAAGTAGTACTTCT+GGG + tig0011622:100017-100036 Msa1350550:intron 25.0%
!! ACGTGAAGCATTTAAAATTT+AGG - tig0011622:100359-100378 None:intergenic 25.0%
! TTAGAAATCATTAGATCCAA+AGG + tig0011622:100517-100536 Msa1350550:intron 25.0%
! AAAACATTGCATTGGAAATT+AGG - tig0011622:100597-100616 None:intergenic 25.0%
! AATATAAGGGTAATGTTAAC+TGG + tig0011622:100926-100945 Msa1350550:intron 25.0%
! TGATTGATTATTTAACTGAG+GGG + tig0011622:101366-101385 Msa1350550:intron 25.0%
! TAACCATTTAAATCCTCTTA+TGG + tig0011622:101577-101596 Msa1350550:intron 25.0%
! TGACAAATATCATTTCTGTT+TGG + tig0011622:101686-101705 Msa1350550:intron 25.0%
! AAAATAATGAGGGAAACAAA+AGG - tig0011622:101788-101807 None:intergenic 25.0%
! TGCACAAGTAAAAATAATGA+GGG - tig0011622:101798-101817 None:intergenic 25.0%
! AATATTACTCTCATCCTAAA+GGG + tig0011622:101905-101924 Msa1350550:three_prime_UTR 25.0%
! TCGTGTAATGATTCTTAAAT+TGG + tig0011622:102074-102093 Msa1350550:three_prime_UTR 25.0%
TATTCATTCATTCACAGAAC+AGG + tig0011622:98835-98854 Msa1350550:five_prime_UTR 30.0%
!! AGTGAAAATTTTGGAGATAG+AGG - tig0011622:98944-98963 None:intergenic 30.0%
! GGTGTAGAAAGTGAAAATTT+TGG - tig0011622:98953-98972 None:intergenic 30.0%
!!! TTGAGAAACGGTGTTTTTTA+TGG - tig0011622:99121-99140 None:intergenic 30.0%
AAATCCTTGTTCAAGAAACT+CGG + tig0011622:99192-99211 Msa1350550:CDS 30.0%
TGCCATTGCAAATTTATTCA+TGG + tig0011622:99287-99306 Msa1350550:intron 30.0%
AAGTTATTGGAAAGAATCAC+TGG + tig0011622:99368-99387 Msa1350550:CDS 30.0%
GCTTACCAATAAAGACATTT+GGG - tig0011622:99406-99425 None:intergenic 30.0%
TGCTTACCAATAAAGACATT+TGG - tig0011622:99407-99426 None:intergenic 30.0%
TTTACACATATATGCTTTGC+CGG + tig0011622:99479-99498 Msa1350550:intron 30.0%
! ATTGAATCTGAAACACATAC+CGG - tig0011622:99501-99520 None:intergenic 30.0%
TTACGTTTACATCCAATGAT+GGG - tig0011622:99538-99557 None:intergenic 30.0%
TTTACGTTTACATCCAATGA+TGG - tig0011622:99539-99558 None:intergenic 30.0%
TGATAAGCGCTTATACTATA+TGG - tig0011622:99700-99719 None:intergenic 30.0%
TATTCCATCATCTTATCTAC+TGG - tig0011622:99850-99869 None:intergenic 30.0%
TGATTGAGAGTGGTTATATT+AGG + tig0011622:99961-99980 Msa1350550:intron 30.0%
GGATATATAAGTAGTACTTC+TGG + tig0011622:100016-100035 Msa1350550:intron 30.0%
ATAGCAAGAGAAATTTCATC+TGG + tig0011622:100167-100186 Msa1350550:intron 30.0%
TAGCAAGAGAAATTTCATCT+GGG + tig0011622:100168-100187 Msa1350550:intron 30.0%
! AGGAGGAACTTTTGAATATT+TGG + tig0011622:100292-100311 Msa1350550:intron 30.0%
GTTGTCTAAAAACATTGCAT+TGG - tig0011622:100605-100624 None:intergenic 30.0%
TTTAGACAACTAAATTTCCC+TGG + tig0011622:100615-100634 Msa1350550:intron 30.0%
TTAGACAACTAAATTTCCCT+GGG + tig0011622:100616-100635 Msa1350550:intron 30.0%
TGCAAACATAGAAATGAAGA+GGG - tig0011622:100647-100666 None:intergenic 30.0%
TTGCAAACATAGAAATGAAG+AGG - tig0011622:100648-100667 None:intergenic 30.0%
GATATACGTTCTTTACAGAA+AGG - tig0011622:100758-100777 None:intergenic 30.0%
ACTCCAATACATGTAATTGT+AGG + tig0011622:100784-100803 Msa1350550:intron 30.0%
!!! TGTGGCCTAATTTTTTAAGT+TGG - tig0011622:100822-100841 None:intergenic 30.0%
!! GTAACAGACTTATGTTGTTT+TGG - tig0011622:101225-101244 None:intergenic 30.0%
CTGCAATGAAGAAAACTTTA+GGG - tig0011622:101292-101311 None:intergenic 30.0%
GATTGATTATTTAACTGAGG+GGG + tig0011622:101367-101386 Msa1350550:intron 30.0%
ATTGATTATTTAACTGAGGG+GGG + tig0011622:101368-101387 Msa1350550:intron 30.0%
ATGCAGACAATTTACATTTG+CGG - tig0011622:101497-101516 None:intergenic 30.0%
AGAGGATTTAAATGGTTAAC+TGG - tig0011622:101575-101594 None:intergenic 30.0%
! TACATGCATAACTGATAATG+TGG - tig0011622:101640-101659 None:intergenic 30.0%
ATGATATTTGTCACAATGAG+AGG - tig0011622:101679-101698 None:intergenic 30.0%
CTGCACAAGTAAAAATAATG+AGG - tig0011622:101799-101818 None:intergenic 30.0%
AGAAGCTGTTGCTAAAAATA+AGG + tig0011622:101865-101884 Msa1350550:CDS 30.0%
GAAGCTGTTGCTAAAAATAA+GGG + tig0011622:101866-101885 Msa1350550:CDS 30.0%
AAGCTGTTGCTAAAAATAAG+GGG + tig0011622:101867-101886 Msa1350550:CDS 30.0%
CAATATTACTCTCATCCTAA+AGG + tig0011622:101904-101923 Msa1350550:three_prime_UTR 30.0%
TATTAACTCAGTGCTTTCAA+GGG - tig0011622:101964-101983 None:intergenic 30.0%
ATTAGACCCTAATAAATCTG+TGG + tig0011622:101999-102018 Msa1350550:three_prime_UTR 30.0%
CTCAAACCACAGATTTATTA+GGG - tig0011622:102008-102027 None:intergenic 30.0%
CTAATAAATCTGTGGTTTGA+GGG + tig0011622:102007-102026 Msa1350550:three_prime_UTR 30.0%
!!! ATTCAGTTTTCAGGTACAAA+AGG - tig0011622:102054-102073 None:intergenic 30.0%
! ATTACACGAATTCAGTTTTC+AGG - tig0011622:102063-102082 None:intergenic 30.0%
AAATTGGTCATTTAAATGCC+TGG + tig0011622:102090-102109 Msa1350550:three_prime_UTR 30.0%
AATTGGTCATTTAAATGCCT+GGG + tig0011622:102091-102110 Msa1350550:three_prime_UTR 30.0%
GTAAGAACTAATTAGATCTG+TGG + tig0011622:102124-102143 Msa1350550:three_prime_UTR 30.0%
AAGACTTTAGGTGATTGGTA+CGG + tig0011622:98791-98810 Msa1350550:five_prime_UTR 35.0%
AATGAATAATGGTCGAACGA+AGG - tig0011622:98823-98842 None:intergenic 35.0%
CAGAACAGGAAAGTGAATAA+TGG + tig0011622:98849-98868 Msa1350550:exon 35.0%
GTGAATAATGGCTTCATCAA+TGG + tig0011622:98861-98880 Msa1350550:exon 35.0%
AGGATGAAGAAGAAGAAGAA+GGG - tig0011622:98924-98943 None:intergenic 35.0%
TGAAGAAGAAGAAGAAGACA+TGG - tig0011622:99046-99065 None:intergenic 35.0%
AAAGAAGGAGAAGAAGAAGA+GGG - tig0011622:99078-99097 None:intergenic 35.0%
TCTTCTTCTTCTCCTTCTTT+CGG + tig0011622:99078-99097 Msa1350550:CDS 35.0%
!!! AACAACAGGGTTTTGAGAAA+CGG - tig0011622:99133-99152 None:intergenic 35.0%
TCAACCATTGGTCATTGAAT+TGG + tig0011622:99218-99237 Msa1350550:CDS 35.0%
GTCATTGAATTGGACGAATT+GGG + tig0011622:99228-99247 Msa1350550:CDS 35.0%
TCCACAATTGCAGAAGTTAT+TGG + tig0011622:99355-99374 Msa1350550:CDS 35.0%
TCCAATAACTTCTGCAATTG+TGG - tig0011622:99359-99378 None:intergenic 35.0%
ACTGTCCCAAATGTCTTTAT+TGG + tig0011622:99398-99417 Msa1350550:CDS 35.0%
GTGTTCCTTGGGTTTAAATT+AGG - tig0011622:99648-99667 None:intergenic 35.0%
AAGCTATCATGTAGAGCTTA+TGG + tig0011622:99769-99788 Msa1350550:intron 35.0%
TATGCCAGTAGATAAGATGA+TGG + tig0011622:99843-99862 Msa1350550:intron 35.0%
TGAGAGTGGTTATATTAGGT+AGG + tig0011622:99965-99984 Msa1350550:intron 35.0%
AAACTCTCTTGAAACAACCA+CGG + tig0011622:100249-100268 Msa1350550:intron 35.0%
!! GTTTCCCAATGAGTTTGTTA+AGG + tig0011622:100272-100291 Msa1350550:intron 35.0%
TCCTCCTTAACAAACTCATT+GGG - tig0011622:100279-100298 None:intergenic 35.0%
TTCCTCCTTAACAAACTCAT+TGG - tig0011622:100280-100299 None:intergenic 35.0%
CATTGTTAGCAAAATAGCTG+AGG + tig0011622:100382-100401 Msa1350550:intron 35.0%
CAACACTTGTAACAAACTCT+TGG - tig0011622:100486-100505 None:intergenic 35.0%
ACATTGCATTGGAAATTAGG+TGG - tig0011622:100594-100613 None:intergenic 35.0%
GATCTCTACTATTTGCACAT+GGG + tig0011622:100688-100707 Msa1350550:intron 35.0%
GTTCTTTACAGAAAGGACTT+TGG - tig0011622:100751-100770 None:intergenic 35.0%
GAGCCTACAATTACATGTAT+TGG - tig0011622:100790-100809 None:intergenic 35.0%
AAACTTTCTGCGATTGTGAA+TGG - tig0011622:100849-100868 None:intergenic 35.0%
TAATCCATAGTTCAAGGCAT+GGG - tig0011622:100907-100926 None:intergenic 35.0%
TTAATCCATAGTTCAAGGCA+TGG - tig0011622:100908-100927 None:intergenic 35.0%
! TTAACATTTTCTCCTTCTCC+CGG - tig0011622:101147-101166 None:intergenic 35.0%
CCTGCAATGAAGAAAACTTT+AGG - tig0011622:101293-101312 None:intergenic 35.0%
! CCTAAAGTTTTCTTCATTGC+AGG + tig0011622:101290-101309 Msa1350550:CDS 35.0%
! AAAGTTTTCTTCATTGCAGG+TGG + tig0011622:101293-101312 Msa1350550:CDS 35.0%
! AATCATTCAACAAGAGCACA+AGG - tig0011622:101351-101370 None:intergenic 35.0%
! TATCGCGATAATTTGTCTCA+CGG + tig0011622:101546-101565 Msa1350550:intron 35.0%
CAGCCATAAGAGGATTTAAA+TGG - tig0011622:101583-101602 None:intergenic 35.0%
CATTTAAATCCTCTTATGGC+TGG + tig0011622:101581-101600 Msa1350550:intron 35.0%
TTTATGGAACTGTGTAACGT+TGG - tig0011622:101734-101753 None:intergenic 35.0%
GAAACAAAAGGAGAAGACAA+AGG - tig0011622:101776-101795 None:intergenic 35.0%
GGATGAGAGTAATATTGACA+AGG - tig0011622:101901-101920 None:intergenic 35.0%
TATATGCGACAAATTGCAAC+CGG - tig0011622:101939-101958 None:intergenic 35.0%
GTATTAACTCAGTGCTTTCA+AGG - tig0011622:101965-101984 None:intergenic 35.0%
CCTCAAACCACAGATTTATT+AGG - tig0011622:102009-102028 None:intergenic 35.0%
CCTAATAAATCTGTGGTTTG+AGG + tig0011622:102006-102025 Msa1350550:three_prime_UTR 35.0%
TTCTTACAGTGTTAATTCCC+AGG - tig0011622:102111-102130 None:intergenic 35.0%
GTTCATCAATTTCATTTGCC+TGG - tig0011622:102160-102179 None:intergenic 35.0%
! GTTACATCGTGACAAGTTTT+AGG + tig0011622:102201-102220 Msa1350550:three_prime_UTR 35.0%
AGCAGAAGACTTTAGGTGAT+TGG + tig0011622:98786-98805 Msa1350550:five_prime_UTR 40.0%
AATAATGGTCGAACGAAGGA+AGG - tig0011622:98819-98838 None:intergenic 40.0%
GAGGATGAAGAAGAAGAAGA+AGG - tig0011622:98925-98944 None:intergenic 40.0%
!! GATGCATTGGTGATGATGAT+GGG - tig0011622:98994-99013 None:intergenic 40.0%
!! TGATGCATTGGTGATGATGA+TGG - tig0011622:98995-99014 None:intergenic 40.0%
GAAAGAAGGAGAAGAAGAAG+AGG - tig0011622:99079-99098 None:intergenic 40.0%
! AGTACCGAGTTTCTTGAACA+AGG - tig0011622:99199-99218 None:intergenic 40.0%
TCGTCCAATTCAATGACCAA+TGG - tig0011622:99225-99244 None:intergenic 40.0%
GGTCATTGAATTGGACGAAT+TGG + tig0011622:99227-99246 Msa1350550:CDS 40.0%
GCAATGGCAAGCAATAATTG+AGG - tig0011622:99276-99295 None:intergenic 40.0%
TTTCTGTGTTTAGGTCCACA+AGG + tig0011622:99332-99351 Msa1350550:intron 40.0%
! AGACATTTGGGACAGTGTAT+TGG - tig0011622:99394-99413 None:intergenic 40.0%
! ATCCAAACAAGGTGTTCCTT+GGG - tig0011622:99659-99678 None:intergenic 40.0%
! TATCCAAACAAGGTGTTCCT+TGG - tig0011622:99660-99679 None:intergenic 40.0%
! AAGTAGTACTTCTGGGTTGA+AGG + tig0011622:100024-100043 Msa1350550:intron 40.0%
TTTGTGCCAGAAAAGTGAGA+GGG + tig0011622:100099-100118 Msa1350550:intron 40.0%
AACTCTCTTGAAACAACCAC+GGG + tig0011622:100250-100269 Msa1350550:intron 40.0%
!! TCCCAATGAGTTTGTTAAGG+AGG + tig0011622:100275-100294 Msa1350550:intron 40.0%
! TTGGTGACTTTGAGAACGAT+TGG + tig0011622:100311-100330 Msa1350550:intron 40.0%
! TGGTGACTTTGAGAACGATT+GGG + tig0011622:100312-100331 Msa1350550:intron 40.0%
! TCCTCAATGGCTTTTCCTTA+GGG - tig0011622:100439-100458 None:intergenic 40.0%
AAACTCTTGGAGGATACTTG+GGG - tig0011622:100473-100492 None:intergenic 40.0%
CAAACTCTTGGAGGATACTT+GGG - tig0011622:100474-100493 None:intergenic 40.0%
ACAAACTCTTGGAGGATACT+TGG - tig0011622:100475-100494 None:intergenic 40.0%
CACTTGTAACAAACTCTTGG+AGG - tig0011622:100483-100502 None:intergenic 40.0%
TGCTAGATGAACTTCTCCTT+TGG - tig0011622:100536-100555 None:intergenic 40.0%
AATGGCAATGGCAATGACAA+TGG - tig0011622:100564-100583 None:intergenic 40.0%
AAATTAGGTGGCAATGGCAA+TGG - tig0011622:100582-100601 None:intergenic 40.0%
CATTGGAAATTAGGTGGCAA+TGG - tig0011622:100588-100607 None:intergenic 40.0%
CGATCTCTACTATTTGCACA+TGG + tig0011622:100687-100706 Msa1350550:intron 40.0%
! TTAACATACTGGTTGGGCTA+AGG + tig0011622:101095-101114 Msa1350550:intron 40.0%
! TAACATACTGGTTGGGCTAA+GGG + tig0011622:101096-101115 Msa1350550:intron 40.0%
CTAAGGGTTGAAGAAGACAA+CGG + tig0011622:101112-101131 Msa1350550:intron 40.0%
TAAGGGTTGAAGAAGACAAC+GGG + tig0011622:101113-101132 Msa1350550:intron 40.0%
GAATAATGCTTCAGTCACTG+AGG - tig0011622:101427-101446 None:intergenic 40.0%
ATGCATGTATGACGCTTTCA+TGG + tig0011622:101651-101670 Msa1350550:intron 40.0%
CAGATACACTTAAGCTGTAC+AGG + tig0011622:101816-101835 Msa1350550:intron 40.0%
ACACTTAAGCTGTACAGGAA+AGG + tig0011622:101821-101840 Msa1350550:CDS 40.0%
CTTCTGATAGCAGAGTTTCA+AGG - tig0011622:101850-101869 None:intergenic 40.0%
ATCCTAAAGGGAATCTGATC+CGG + tig0011622:101917-101936 Msa1350550:three_prime_UTR 40.0%
GAAGAGGCTCATAAAACAGA+AGG - tig0011622:102230-102249 None:intergenic 40.0%
! GGGTTTTTGTTGAAGTAGCG+AGG - tig0011622:98904-98923 None:intergenic 45.0%
ATGGGTGAAGGAGTGGAAAT+GGG - tig0011622:98976-98995 None:intergenic 45.0%
!! TTGGTGATGATGATGGGTGA+AGG - tig0011622:98988-99007 None:intergenic 45.0%
AAGAAGAAGACATGGCTCGA+GGG - tig0011622:99038-99057 None:intergenic 45.0%
GAAACTCGGTACTCAACCAT+TGG + tig0011622:99206-99225 Msa1350550:CDS 45.0%
TTCTGCAATTGTGGACCTTG+TGG - tig0011622:99350-99369 None:intergenic 45.0%
TTGACGTGACAACCCATCAT+TGG + tig0011622:99523-99542 Msa1350550:intron 45.0%
AACCCAAGGAACACCTTGTT+TGG + tig0011622:99654-99673 Msa1350550:intron 45.0%
CAGACTTCTGTGATTGAGAG+TGG + tig0011622:99951-99970 Msa1350550:intron 45.0%
CTGGCACAAACACAGATTCT+TGG - tig0011622:100089-100108 None:intergenic 45.0%
GTTTGTGCCAGAAAAGTGAG+AGG + tig0011622:100098-100117 Msa1350550:intron 45.0%
!! TTCTCTCCCTCTCACTTTTC+TGG - tig0011622:100108-100127 None:intergenic 45.0%
ACCCTAAGGAAAAGCCATTG+AGG + tig0011622:100435-100454 Msa1350550:intron 45.0%
! CTCCTCAATGGCTTTTCCTT+AGG - tig0011622:100440-100459 None:intergenic 45.0%
GGCTCAAAATGTCTCCTCAA+TGG - tig0011622:100452-100471 None:intergenic 45.0%
AATGAAGAGGGATTCACCCA+GGG - tig0011622:100635-100654 None:intergenic 45.0%
AAATGAAGAGGGATTCACCC+AGG - tig0011622:100636-100655 None:intergenic 45.0%
! CTATTTGCACATGGGTTGTG+AGG + tig0011622:100696-100715 Msa1350550:intron 45.0%
TCTTCCCATGCCTTGAACTA+TGG + tig0011622:100900-100919 Msa1350550:intron 45.0%
! CACCGGTTAACATACTGGTT+GGG + tig0011622:101089-101108 Msa1350550:intron 45.0%
AGCCCAACCAGTATGTTAAC+CGG - tig0011622:101094-101113 None:intergenic 45.0%
AAGGGTTGAAGAAGACAACG+GGG + tig0011622:101114-101133 Msa1350550:intron 45.0%
AAGACAACGGGGTTCAAAAC+CGG + tig0011622:101125-101144 Msa1350550:intron 45.0%
! GCATGTTTTCCAGCCATAAG+AGG - tig0011622:101593-101612 None:intergenic 45.0%
AACCGGATCAGATTCCCTTT+AGG - tig0011622:101922-101941 None:intergenic 45.0%
!!! TTATATTAGATTTTTTTTAT+AGG - tig0011622:101198-101217 None:intergenic 5.0%
TGGGTGAAGGAGTGGAAATG+GGG - tig0011622:98975-98994 None:intergenic 50.0%
GATGGGTGAAGGAGTGGAAA+TGG - tig0011622:98977-98996 None:intergenic 50.0%
!! GATGATGATGGGTGAAGGAG+TGG - tig0011622:98983-99002 None:intergenic 50.0%
GAAGAAGAAGACATGGCTCG+AGG - tig0011622:99039-99058 None:intergenic 50.0%
GGAGAAGAAGAAGAGGGAGA+AGG - tig0011622:99072-99091 None:intergenic 50.0%
!! CTCAGAGCAATAAGAGCACC+AGG - tig0011622:99169-99188 None:intergenic 50.0%
CTGGTGCTCTTATTGCTCTG+AGG + tig0011622:99167-99186 Msa1350550:CDS 50.0%
! GTACTTCTGGGTTGAAGGCA+TGG + tig0011622:100029-100048 Msa1350550:intron 50.0%
CAAACTCATTGGGAAACCCG+TGG - tig0011622:100269-100288 None:intergenic 50.0%
TGAGGAGACCTAGTAGCAGA+AGG + tig0011622:100400-100419 Msa1350550:intron 50.0%
GAGGAGACCTAGTAGCAGAA+GGG + tig0011622:100401-100420 Msa1350550:intron 50.0%
AGGAGACCTAGTAGCAGAAG+GGG + tig0011622:100402-100421 Msa1350550:intron 50.0%
TCACAACCCCTTCTGCTACT+AGG - tig0011622:100411-100430 None:intergenic 50.0%
TAGTAGCAGAAGGGGTTGTG+AGG + tig0011622:100410-100429 Msa1350550:intron 50.0%
AGTAGCAGAAGGGGTTGTGA+GGG + tig0011622:100411-100430 Msa1350550:intron 50.0%
GCGATTGTGAATGGTGAGTG+TGG - tig0011622:100840-100859 None:intergenic 50.0%
GTAATGTTAACTGGTGCCCC+CGG + tig0011622:100935-100954 Msa1350550:intron 50.0%
TAATGTTAACTGGTGCCCCC+GGG + tig0011622:100936-100955 Msa1350550:intron 50.0%
!! GCACCGGTTAACATACTGGT+TGG + tig0011622:101088-101107 Msa1350550:intron 50.0%
AGACAACGGGGTTCAAAACC+GGG + tig0011622:101126-101145 Msa1350550:intron 50.0%
ATTGCAGGTGGCCAACACAT+TGG + tig0011622:101305-101324 Msa1350550:CDS 50.0%
CTGTACAGCCACCAATGTGT+TGG - tig0011622:101319-101338 None:intergenic 50.0%
! CAACACATTGGTGGCTGTAC+AGG + tig0011622:101317-101336 Msa1350550:CDS 50.0%
ATCTGTGGTTTGAGTGCTCC+AGG + tig0011622:102139-102158 Msa1350550:three_prime_UTR 50.0%
GGGTGAAGGAGTGGAAATGG+GGG - tig0011622:98974-98993 None:intergenic 55.0%
GACATGGCTCGAGGGAAAGT+GGG - tig0011622:99030-99049 None:intergenic 55.0%
AGACATGGCTCGAGGGAAAG+TGG - tig0011622:99031-99050 None:intergenic 55.0%
TCGAGACGAGAGCCGAAAGA+AGG - tig0011622:99093-99112 None:intergenic 55.0%
GGTGGCAATGGCAATGGCAA+TGG - tig0011622:100576-100595 None:intergenic 55.0%
AATGTTAACTGGTGCCCCCG+GGG + tig0011622:100937-100956 Msa1350550:intron 55.0%
TTGCTCCTTAACCAGTGCCC+CGG - tig0011622:100957-100976 None:intergenic 55.0%
AGTATGTTAACCGGTGCCCC+CGG - tig0011622:101085-101104 None:intergenic 55.0%
! TGCGCGGCGTGATGATGCAT+TGG - tig0011622:99007-99026 None:intergenic 60.0%
GGGGTTGTGAGGGAACCCTA+AGG + tig0011622:100421-100440 Msa1350550:intron 60.0%
TGCTCCTTAACCAGTGCCCC+GGG - tig0011622:100956-100975 None:intergenic 60.0%
GGTTTCCTTAACCCGTGCCC+CGG + tig0011622:101063-101082 Msa1350550:intron 60.0%
GTTTCCTTAACCCGTGCCCC+GGG + tig0011622:101064-101083 Msa1350550:intron 60.0%
TTTCCTTAACCCGTGCCCCG+GGG + tig0011622:101065-101084 Msa1350550:intron 60.0%
TATGTTAACCGGTGCCCCCG+GGG - tig0011622:101083-101102 None:intergenic 60.0%
GTATGTTAACCGGTGCCCCC+GGG - tig0011622:101084-101103 None:intergenic 60.0%
!! GGGGGCACCGGTTAACATAC+TGG + tig0011622:101084-101103 Msa1350550:intron 60.0%
CGGGGTTCAAAACCGGGAGA+AGG + tig0011622:101132-101151 Msa1350550:intron 60.0%
GCAGGTGGCCAACACATTGG+TGG + tig0011622:101308-101327 Msa1350550:CDS 60.0%
CTCGAGGGAAAGTGGGTGCG+CGG - tig0011622:99023-99042 None:intergenic 65.0%
CTCCTTAACCAGTGCCCCGG+GGG - tig0011622:100954-100973 None:intergenic 65.0%
GCTCCTTAACCAGTGCCCCG+GGG - tig0011622:100955-100974 None:intergenic 65.0%
TTCCTTAACCCGTGCCCCGG+GGG + tig0011622:101066-101085 Msa1350550:intron 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + tig0011622:100949-100968 Msa1350550:intron 70.0%
AACTGGTGCCCCCGGGGCAC+TGG + tig0011622:100943-100962 Msa1350550:intron 75.0%
! TGCCCCCGGGGCACGGGTTA+AGG - tig0011622:101071-101090 None:intergenic 75.0%
TAACCGGTGCCCCCGGGGCA+CGG - tig0011622:101078-101097 None:intergenic 75.0%
!! AACCCGTGCCCCGGGGGCAC+CGG + tig0011622:101072-101091 Msa1350550:intron 80.0%
! AACCGGTGCCCCCGGGGCAC+GGG - tig0011622:101077-101096 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0011622 gene 98781 102275 98781 ID=Msa1350550;Name=Msa1350550
tig0011622 mRNA 98781 102275 98781 ID=Msa1350550-mRNA-1;Parent=Msa1350550;Name=Msa1350550-mRNA-1;_AED=0.15;_eAED=0.15;_QI=87|0.66|0.75|1|1|1|4|380|199
tig0011622 exon 98781 99249 98781 ID=Msa1350550-mRNA-1:exon:7461;Parent=Msa1350550-mRNA-1
tig0011622 exon 99345 99419 99345 ID=Msa1350550-mRNA-1:exon:7462;Parent=Msa1350550-mRNA-1
tig0011622 exon 101273 101338 101273 ID=Msa1350550-mRNA-1:exon:7463;Parent=Msa1350550-mRNA-1
tig0011622 exon 101819 102275 101819 ID=Msa1350550-mRNA-1:exon:7464;Parent=Msa1350550-mRNA-1
tig0011622 five_prime_UTR 98781 98867 98781 ID=Msa1350550-mRNA-1:five_prime_utr;Parent=Msa1350550-mRNA-1
tig0011622 CDS 98868 99249 98868 ID=Msa1350550-mRNA-1:cds;Parent=Msa1350550-mRNA-1
tig0011622 CDS 99345 99419 99345 ID=Msa1350550-mRNA-1:cds;Parent=Msa1350550-mRNA-1
tig0011622 CDS 101273 101338 101273 ID=Msa1350550-mRNA-1:cds;Parent=Msa1350550-mRNA-1
tig0011622 CDS 101819 101895 101819 ID=Msa1350550-mRNA-1:cds;Parent=Msa1350550-mRNA-1
tig0011622 three_prime_UTR 101896 102275 101896 ID=Msa1350550-mRNA-1:three_prime_utr;Parent=Msa1350550-mRNA-1
Gene Sequence

>Msa1350550

ATGGCTTCATCAATGGCGAACACTTTCACTCTTCCTCGCTACTTCAACAAAAACCCTTCTTCTTCTTCTTCATCCTCTATCTCCAAAATTTTCACTTTCTACACCCCCATTTCCACTCCTTCACCCATCATCATCACCAATGCATCATCACGCCGCGCACCCACTTTCCCTCGAGCCATGTCTTCTTCTTCTTCTTCATCTCCTTCTCCCTCTTCTTCTTCTCCTTCTTTCGGCTCTCGTCTCGAAGAAACCATAAAAAACACCGTTTCTCAAAACCCTGTTGTTGTTTATTCTAAATCCTGGTGCTCTTATTGCTCTGAGGTCAAATCCTTGTTCAAGAAACTCGGTACTCAACCATTGGTCATTGAATTGGACGAATTGGGTCCACAAGGTCCACAATTGCAGAAGTTATTGGAAAGAATCACTGGCCAATACACTGTCCCAAATGTCTTTATTGAACAGTTTATTTCTGACCCTAAAGTTTTCTTCATTGCAGGTGGCCAACACATTGGTGGCTGTACAGATACACTTAAGCTGTACAGGAAAGGAGACCTTGAAACTCTGCTATCAGAAGCTGTTGCTAAAAATAAGGGGAGCTAA

Protein sequence

>Msa1350550

MASSMANTFTLPRYFNKNPSSSSSSSISKIFTFYTPISTPSPIIITNASSRRAPTFPRAMSSSSSSSPSPSSSSPSFGSRLEETIKNTVSQNPVVVYSKSWCSYCSEVKSLFKKLGTQPLVIELDELGPQGPQLQKLLERITGQYTVPNVFIEQFISDPKVFFIAGGQHIGGCTDTLKLYRKGDLETLLSEAVAKNKGS*