AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125440 MtrunA17_Chr1g0186361 98.374 369 6 0 1 369 492 860 0.0 760
Msa0125440 MtrunA17_Chr1g0168291 68.085 376 65 3 1 351 84 429 0.0 515
Msa0125440 MtrunA17_Chr3g0135991 28.692 237 156 6 85 316 81 309 1.31e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125440 AT3G23510.1 75.610 369 88 1 1 369 495 861 0.0 605
Msa0125440 AT3G23530.1 75.610 369 88 1 1 369 495 861 0.0 600
Msa0125440 AT3G23470.1 70.541 370 106 2 1 367 84 453 0.0 567
Msa0125440 AT3G23470.3 70.541 370 106 2 1 367 111 480 0.0 566
Msa0125440 AT3G23470.2 70.541 370 106 2 1 367 111 480 0.0 566
Msa0125440 AT3G23480.1 69.444 360 108 2 1 359 83 441 0.0 533
Msa0125440 AT3G23480.3 63.073 371 110 5 1 367 46 393 3.03e-166 473
Msa0125440 AT3G23480.2 63.073 371 110 5 1 367 83 430 4.81e-166 473
Msa0125440 AT3G23460.1 54.011 187 70 3 1 186 73 244 7.38e-57 188
Msa0125440 AT3G23460.1 72.368 76 21 0 288 363 209 284 6.54e-35 130
Msa0125440 AT4G33110.1 29.412 255 170 6 67 319 60 306 2.79e-27 110
Msa0125440 AT4G33110.2 29.412 255 170 6 67 319 60 306 2.79e-27 110
Msa0125440 AT4G33120.1 26.374 273 189 7 67 333 60 326 1.63e-24 103

Find 188 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACCTGCTCTTCAATTT+TGG 0.081221 1_3:-53911522 None:intergenic
TACATACCTTCCAATAAAAT+TGG 0.167387 1_3:-53910925 None:intergenic
TTGTGTTCTCAGTGAAATTT+TGG 0.197558 1_3:+53913415 Msa0125440:intron
ACCTGATGCTTTGAGATTAT+TGG 0.222421 1_3:+53909601 Msa0125440:five_prime_UTR
CTATCATATTTGTATGTCTT+TGG 0.223682 1_3:-53912559 None:intergenic
GTTGAGGTGTTACAGCTTAT+TGG 0.231147 1_3:+53910824 Msa0125440:intron
TCCAAAAGTCTTTAATAAAA+TGG 0.233751 1_3:-53905024 None:intergenic
CAAGAAGGTACCATGTGTTT+AGG 0.247042 1_3:-53910494 None:intergenic
GACTCATTGTGATCCATATC+TGG 0.255714 1_3:-53908585 None:intergenic
TGATGGACTTCTTGTTCTTC+AGG 0.266991 1_3:+53912756 Msa0125440:CDS
CTTGAAAATCGTTAAATTAG+AGG 0.272048 1_3:+53913815 Msa0125440:three_prime_UTR
TGATTTGGACCTTGGTTTCA+TGG 0.272691 1_3:+53905291 Msa0125440:five_prime_UTR
AAAGAAGAGCTTCAGAATAA+TGG 0.273819 1_3:+53909359 Msa0125440:five_prime_UTR
ATTGCAGCTCATGGAATTCT+TGG 0.274520 1_3:+53910446 Msa0125440:five_prime_UTR
TATGATGAGAGAAGAATTAT+TGG 0.288707 1_3:+53909638 Msa0125440:five_prime_UTR
TGCTCCTCTCTGCAGCTCTT+TGG 0.292680 1_3:+53908953 Msa0125440:intron
CTCACAGAATTATGTTAAAA+AGG 0.296176 1_3:+53909006 Msa0125440:five_prime_UTR
GACATCTGCAAAGTTCTTCA+TGG 0.299126 1_3:+53911657 Msa0125440:CDS
ATTTCATGAAGATGGATTAA+AGG 0.305706 1_3:+53910276 Msa0125440:five_prime_UTR
TCAAAGAATTCCATCATATT+AGG 0.307032 1_3:-53907755 None:intergenic
CTAAACACATGGTACCTTCT+TGG 0.311391 1_3:+53910495 Msa0125440:five_prime_UTR
TTCCAATTTGTGGTTCTATT+TGG 0.319455 1_3:+53908768 Msa0125440:five_prime_UTR
GAATACATGGAAGAATTCTT+TGG 0.321598 1_3:+53912709 Msa0125440:CDS
GAGGAGCTGAATTGTCCTTT+TGG 0.322671 1_3:+53913834 Msa0125440:three_prime_UTR
AAGAAGGTACCATGTGTTTA+GGG 0.323024 1_3:-53910493 None:intergenic
TTGGTTTCATGGTCTTCAAT+AGG 0.325877 1_3:+53905302 Msa0125440:five_prime_UTR
TTTGGTTTCAGCTTATGTTT+TGG 0.332218 1_3:+53905186 Msa0125440:five_prime_UTR
AAACATGAAATTCTTGAGAT+TGG 0.333905 1_3:+53912182 Msa0125440:CDS
AGTTAAAGATGCTGGCCTTC+AGG 0.335477 1_3:+53912307 Msa0125440:CDS
GACCAAATAGAACCACAAAT+TGG 0.337397 1_3:-53908770 None:intergenic
AATGTTTCCTTTGAGGGAAC+TGG 0.338567 1_3:+53910860 Msa0125440:five_prime_UTR
TGGAAAGTGTTGTACCCTTC+AGG 0.338945 1_3:+53910466 Msa0125440:five_prime_UTR
CCTGATGCTTTGAGATTATT+GGG 0.341009 1_3:+53909602 Msa0125440:five_prime_UTR
TTTGCAGGATGTGTCGTTTA+CGG 0.342934 1_3:+53909527 Msa0125440:intron
TGGTTTCATGGTCTTCAATA+GGG 0.343252 1_3:+53905303 Msa0125440:five_prime_UTR
TTGGTTTCATCGTCTGAAAA+AGG 0.347734 1_3:+53909413 Msa0125440:five_prime_UTR
TGGTGGTGGGATTAGTGGTT+TGG 0.352970 1_3:+53905168 Msa0125440:five_prime_UTR
ATTGAAGTTGTTAAAAGAAC+TGG 0.353382 1_3:+53912227 Msa0125440:CDS
TAATGCTGATGGTGTTGATT+TGG 0.360937 1_3:+53905276 Msa0125440:five_prime_UTR
TGAACTCTCAAAACACTCTT+GGG 0.376065 1_3:-53910896 None:intergenic
ACATACCTTCCAATAAAATT+GGG 0.378336 1_3:-53910924 None:intergenic
ATGAATGAGGCTTGTGCTTA+GGG 0.386475 1_3:-53913681 None:intergenic
AAGAAGAGCTTCAGAATAAT+GGG 0.387322 1_3:+53909360 Msa0125440:five_prime_UTR
GTAGTTGGTGGTGGGATTAG+TGG 0.389043 1_3:+53905163 Msa0125440:five_prime_UTR
CTAGCAGATGCATACATTAA+TGG 0.392160 1_3:+53911326 Msa0125440:CDS
TGAGAGTCTTGGAGTTGAAA+TGG 0.395229 1_3:+53907775 Msa0125440:five_prime_UTR
TAAAGAACCAGTGGTAATAA+AGG 0.395909 1_3:-53910561 None:intergenic
TATGGATCACAATGAGTCTC+TGG 0.400490 1_3:+53908590 Msa0125440:five_prime_UTR
AATGAATGAGGCTTGTGCTT+AGG 0.402197 1_3:-53913682 None:intergenic
ATGGAATTCTTTGAGAGTCT+TGG 0.402654 1_3:+53907764 Msa0125440:five_prime_UTR
GGTTATGGATTTCATGAAGA+TGG 0.403889 1_3:+53910268 Msa0125440:intron
TGGCATCCGCATCCAGACTA+TGG 0.404974 1_3:+53913070 Msa0125440:CDS
ACAAAGTTTGTGTCACATAC+TGG 0.407521 1_3:+53909847 Msa0125440:five_prime_UTR
AACCACATTGACTCCACCTT+TGG 0.409238 1_3:-53905209 None:intergenic
CTGAGTTCCTTTATTACCAC+TGG 0.409745 1_3:+53910554 Msa0125440:five_prime_UTR
GGCAGCAGAAACGGTTTGTC+CGG 0.410335 1_3:+53907854 Msa0125440:five_prime_UTR
AGTTCAAAGATGATGCTATA+AGG 0.411304 1_3:+53907942 Msa0125440:five_prime_UTR
TACTCATCATAACGCTCATC+CGG 0.413131 1_3:-53912967 None:intergenic
GTGAACTCTCAAAACACTCT+TGG 0.413336 1_3:-53910897 None:intergenic
AGGAACAATGTTTCCTTTGA+GGG 0.413524 1_3:+53910854 Msa0125440:five_prime_UTR
GCTTGAGAATAACCCAGATA+TGG 0.416608 1_3:+53908572 Msa0125440:five_prime_UTR
ATACTCTCACACAGGCTAGA+AGG 0.417607 1_3:+53911698 Msa0125440:CDS
TTCCAAGCACTCCATGCTGC+TGG 0.419561 1_3:-53909804 None:intergenic
CAAAGGTCGCGGCTGTGAAT+GGG 0.421739 1_3:+53907832 Msa0125440:five_prime_UTR
GATGGTGTTGATTTGGACCT+TGG 0.425424 1_3:+53905283 Msa0125440:five_prime_UTR
ACCCAGCAGCATGGAGTGCT+TGG 0.427588 1_3:+53909802 Msa0125440:five_prime_UTR
TATTAGATTGTACCATAGTC+TGG 0.429735 1_3:-53913082 None:intergenic
GATATGAGAGTTGCAGTAGT+TGG 0.429736 1_3:+53905148 Msa0125440:five_prime_UTR
TGTATGTAGATTCCAATTTG+TGG 0.430851 1_3:+53908758 Msa0125440:intron
ACAAAGGTCGCGGCTGTGAA+TGG 0.432001 1_3:+53907831 Msa0125440:five_prime_UTR
TTTGTTCACTCACTTGTTTG+TGG 0.432091 1_3:+53904975 Msa0125440:five_prime_UTR
CAAAGACATACAAATATGAT+AGG 0.432949 1_3:+53912560 Msa0125440:CDS
CGGAAAATACATTGCTTAAG+TGG 0.433103 1_3:+53910026 Msa0125440:five_prime_UTR
CCCAATAATCTCAAAGCATC+AGG 0.435357 1_3:-53909602 None:intergenic
ACGCACACTTGGGAATTATC+AGG 0.436845 1_3:+53913511 Msa0125440:CDS
CATGTGTCTTTAGGGGTTGG+TGG 0.437757 1_3:+53911608 Msa0125440:intron
GAGGAACAATGTTTCCTTTG+AGG 0.439775 1_3:+53910853 Msa0125440:five_prime_UTR
TCGTAATCACCACCTACTTC+AGG 0.441427 1_3:+53908847 Msa0125440:five_prime_UTR
ACATTGCTTAAGTGGTCAAC+TGG 0.455428 1_3:+53910034 Msa0125440:five_prime_UTR
TCATTTGTTGATAAAGATGA+AGG 0.459873 1_3:+53911356 Msa0125440:CDS
GTACCTTCTTGGAAAGAACT+TGG 0.464070 1_3:+53910506 Msa0125440:five_prime_UTR
TAGTTGTTTGCCACTCCAAA+AGG 0.466450 1_3:-53913849 None:intergenic
GTATGAGAAAGAAGATTACT+TGG 0.468571 1_3:+53905234 Msa0125440:five_prime_UTR
GGATGAATTTAAATCTCTGT+TGG 0.470475 1_3:-53911496 None:intergenic
TCTTCATGGACCATGTTTCA+AGG 0.471530 1_3:+53911671 Msa0125440:CDS
AAACCAGCCGTAAATAAAAT+CGG 0.474194 1_3:-53911634 None:intergenic
GTGTTTAGGGTTGGCCTGAA+GGG 0.477380 1_3:-53910480 None:intergenic
GTCATGACACAGGCAGATTT+AGG 0.481912 1_3:+53911302 Msa0125440:exon
TACCTTCTTGGAAAGAACTT+GGG 0.489891 1_3:+53910507 Msa0125440:five_prime_UTR
TGTATGTCTTTGGCAATTGT+CGG 0.490331 1_3:-53912549 None:intergenic
CTTGAGATTGGATGTGGATG+GGG 0.492917 1_3:+53912194 Msa0125440:CDS
TAAAATGGACACGTTATTCG+TGG 0.494276 1_3:-53905009 None:intergenic
GCTGGCATGATTGCAGCTCA+TGG 0.494331 1_3:+53910437 Msa0125440:five_prime_UTR
AACAAGTGAGTGAACAAAAG+TGG 0.498816 1_3:-53904970 None:intergenic
GAAATTCTTGAGATTGGATG+TGG 0.499152 1_3:+53912188 Msa0125440:CDS
ATACTGGCTAAACATTCTTC+AGG 0.502005 1_3:+53909863 Msa0125440:five_prime_UTR
CTGAATGCAGTAACGTTCCC+AGG 0.504504 1_3:-53913639 None:intergenic
TTGCAGAATATTGAAGAAGC+AGG 0.504510 1_3:+53909965 Msa0125440:intron
TGTGTCGTTTACGGCAAAGA+TGG 0.505224 1_3:+53909536 Msa0125440:five_prime_UTR
TGTGAATGGGGCAGCAGAAA+CGG 0.505779 1_3:+53907845 Msa0125440:five_prime_UTR
GTAGAGCTAGACCATATTCA+AGG 0.506705 1_3:+53910094 Msa0125440:five_prime_UTR
ATGTTTCCTTTGAGGGAACT+GGG 0.508976 1_3:+53910861 Msa0125440:five_prime_UTR
TCCAAGCACTCCATGCTGCT+GGG 0.513463 1_3:-53909803 None:intergenic
TGTGTTTAGGGTTGGCCTGA+AGG 0.513499 1_3:-53910481 None:intergenic
ATTTGGTCGTGCTCTTCTGA+AGG 0.513562 1_3:+53908785 Msa0125440:five_prime_UTR
CATTTCTAGACATTATGATC+TGG 0.515475 1_3:+53911723 Msa0125440:CDS
AGAGTTGCAGTAGTTGGTGG+TGG 0.516334 1_3:+53905154 Msa0125440:five_prime_UTR
GCTTTGTATGCGGCAACTGA+TGG 0.517716 1_3:-53910067 None:intergenic
CCAACCCAAAATTGAAGAGC+AGG 0.517767 1_3:+53911517 Msa0125440:CDS
GCCCCAAGTTCTTTCCAAGA+AGG 0.523486 1_3:-53910509 None:intergenic
TCTTGAGATTGGATGTGGAT+GGG 0.525582 1_3:+53912193 Msa0125440:CDS
TCAGTGATCCATACAAAAGC+TGG 0.525706 1_3:+53913658 Msa0125440:CDS
CTTCTCTGACAAAGTGATAC+CGG 0.525947 1_3:-53912261 None:intergenic
GGTGACCTATCCTAATATGA+TGG 0.526784 1_3:+53907745 Msa0125440:intron
CACAGCCGCGACCTTTGTCT+AGG 0.531262 1_3:-53907826 None:intergenic
CTTTGTATGCGGCAACTGAT+GGG 0.531762 1_3:-53910066 None:intergenic
TTTGTCCTAGTACCTGAAGT+AGG 0.534342 1_3:-53908859 None:intergenic
AATATGATAGGATTATATCT+TGG 0.535641 1_3:+53912572 Msa0125440:CDS
ATGAGCGTTATGATGAGTAT+AGG 0.536472 1_3:+53912971 Msa0125440:CDS
TTTCTTGTCTCAACTTGTCA+CGG 0.537066 1_3:+53904944 Msa0125440:five_prime_UTR
ATGGATCACAATGAGTCTCT+GGG 0.539159 1_3:+53908591 Msa0125440:five_prime_UTR
GTTCACTCACTTGTTTGTGG+AGG 0.540294 1_3:+53904978 Msa0125440:five_prime_UTR
TCTAAATCCTGATCATGTAC+CGG 0.541730 1_3:+53910006 Msa0125440:five_prime_UTR
CTGAGTAACCCCTTGTCTTG+AGG 0.545319 1_3:-53908620 None:intergenic
TCATTGAGAAGAAGAAGATA+AGG 0.551826 1_3:+53905123 Msa0125440:five_prime_UTR
ACTCATTGTGATCCATATCT+GGG 0.553880 1_3:-53908584 None:intergenic
TATGCGGCAACTGATGGGAC+CGG 0.554214 1_3:-53910061 None:intergenic
AGTGAAATGATAGAAGCTGT+TGG 0.554426 1_3:+53912682 Msa0125440:intron
AGGTACCATGTGTTTAGGGT+TGG 0.558886 1_3:-53910489 None:intergenic
GTTGCCTACCCTCTCTAAGT+AGG 0.559456 1_3:+53913034 Msa0125440:CDS
TTCTTGAGATTGGATGTGGA+TGG 0.561971 1_3:+53912192 Msa0125440:CDS
CGCAATGGCTAACTGTCAGA+TGG 0.563969 1_3:+53908981 Msa0125440:five_prime_UTR
AGCTCTTTGGCAGACCGCAA+TGG 0.567297 1_3:+53908966 Msa0125440:intron
TCTCTTCTGTGCGAACAAGC+CGG 0.568782 1_3:-53907873 None:intergenic
GAATTCCATCATATTAGGAT+AGG 0.570145 1_3:-53907750 None:intergenic
CAGTGGTAATAAAGGAACTC+AGG 0.570251 1_3:-53910553 None:intergenic
TCTATAGTTCATATCAATCC+CGG 0.573341 1_3:+53912948 Msa0125440:intron
AAAGGTCGCGGCTGTGAATG+GGG 0.574527 1_3:+53907833 Msa0125440:five_prime_UTR
ACCTTCTTGGAAAGAACTTG+GGG 0.575673 1_3:+53910508 Msa0125440:five_prime_UTR
ATGCGGCAACTGATGGGACC+GGG 0.576146 1_3:-53910060 None:intergenic
TGTTACAGCTTATTGGAGGA+AGG 0.576939 1_3:+53910831 Msa0125440:intron
GAATCAGTAATGGCAAATGA+TGG 0.578032 1_3:+53912739 Msa0125440:CDS
AAAATTTCATGGAAAGGCAG+AGG 0.580802 1_3:+53913305 Msa0125440:CDS
ACTATCAAACACTAAGATTG+TGG 0.580836 1_3:+53913278 Msa0125440:CDS
TAGTCTGGATGCGGATGCCA+TGG 0.583295 1_3:-53913067 None:intergenic
GGTTCTGAAGAAGTGTATGA+TGG 0.583424 1_3:+53909557 Msa0125440:five_prime_UTR
GTATTCTGCTAGAATGAATG+AGG 0.584579 1_3:-53913694 None:intergenic
ATGAGAGTTGCAGTAGTTGG+TGG 0.585170 1_3:+53905151 Msa0125440:five_prime_UTR
TGGTTGTTGTGAATCAGTAA+TGG 0.588714 1_3:+53912729 Msa0125440:CDS
CATTAATGTATGCATCTGCT+AGG 0.590392 1_3:-53911325 None:intergenic
TGCCGCAAAACCCAGCAGCA+TGG 0.590638 1_3:+53909793 Msa0125440:five_prime_UTR
AGAGAGGGTAGGCAACCTCC+TGG 0.591232 1_3:-53913027 None:intergenic
AAGTAGGATCACATCATCCA+TGG 0.591586 1_3:+53913050 Msa0125440:CDS
GAGGTGTTACAGCTTATTGG+AGG 0.595217 1_3:+53910827 Msa0125440:intron
TGATGTGATCCTACTTAGAG+AGG 0.597804 1_3:-53913043 None:intergenic
AGCTGTTGGACATGAATACA+TGG 0.598486 1_3:+53912696 Msa0125440:CDS
TGGGGCAATTCCTCAAGACA+AGG 0.598858 1_3:+53908610 Msa0125440:five_prime_UTR
ATTGTACCATAGTCTGGATG+CGG 0.599048 1_3:-53913076 None:intergenic
ACTCATCATAACGCTCATCC+GGG 0.599580 1_3:-53912966 None:intergenic
AGTGTATGATGGATGCATAA+TGG 0.603498 1_3:+53909568 Msa0125440:five_prime_UTR
TAAGTGGTCAACTGGCCACC+CGG 0.607543 1_3:+53910042 Msa0125440:five_prime_UTR
CTCTACTGAAGCTTTGTATG+CGG 0.610654 1_3:-53910077 None:intergenic
GAGTTGCAGTAGTTGGTGGT+GGG 0.612691 1_3:+53905155 Msa0125440:five_prime_UTR
GTCGAGCACGTTGAAAACTT+CGG 0.617161 1_3:+53913247 Msa0125440:CDS
TAGAGCTAGACCATATTCAA+GGG 0.617186 1_3:+53910095 Msa0125440:five_prime_UTR
AACTCTCAAAACACTCTTGG+GGG 0.624346 1_3:-53910894 None:intergenic
TATGAGAAAGAAGATTACTT+GGG 0.626650 1_3:+53905235 Msa0125440:five_prime_UTR
GGGGCAATTCCTCAAGACAA+GGG 0.628990 1_3:+53908611 Msa0125440:five_prime_UTR
GAGAAAGAAGATTACTTGGG+AGG 0.629633 1_3:+53905238 Msa0125440:five_prime_UTR
GGCCAAAGGTGGAGTCAATG+TGG 0.638271 1_3:+53905207 Msa0125440:five_prime_UTR
GAACTCTCAAAACACTCTTG+GGG 0.638316 1_3:-53910895 None:intergenic
TGAATGCAGTAACGTTCCCA+GGG 0.641508 1_3:-53913638 None:intergenic
CATCTGACAGTTAGCCATTG+CGG 0.644217 1_3:-53908980 None:intergenic
CATACCTTCCAATAAAATTG+GGG 0.646666 1_3:-53910923 None:intergenic
GATGTGATCCTACTTAGAGA+GGG 0.646927 1_3:-53913042 None:intergenic
GTCAGCCTAGACAAAGGTCG+CGG 0.650744 1_3:+53907821 Msa0125440:five_prime_UTR
TCAGGAATCTAGTTACAAAG+AGG 0.657976 1_3:-53910535 None:intergenic
AACTCACGTTAAAGAACCAG+TGG 0.662119 1_3:-53910570 None:intergenic
TACAGCTTATTGGAGGAAGG+AGG 0.662186 1_3:+53910834 Msa0125440:intron
GGGCAATTCCTCAAGACAAG+GGG 0.666111 1_3:+53908612 Msa0125440:five_prime_UTR
AGAACTGGTTGCAAATACAC+CGG 0.676836 1_3:+53912242 Msa0125440:CDS
TCAGGCCAACCCTAAACACA+TGG 0.680274 1_3:+53910484 Msa0125440:five_prime_UTR
CGGCAACTGATGGGACCGGG+TGG 0.683926 1_3:-53910057 None:intergenic
TGATCCTACTTAGAGAGGGT+AGG 0.687401 1_3:-53913038 None:intergenic
GTCCTAGTACCTGAAGTAGG+TGG 0.687844 1_3:-53908856 None:intergenic
TGTTTGTCAGGTCATGACAC+AGG 0.688622 1_3:+53911292 Msa0125440:intron
TATTGAAGACCATGAAACCA+AGG 0.698659 1_3:-53905300 None:intergenic
TGGATCACAATGAGTCTCTG+GGG 0.710739 1_3:+53908592 Msa0125440:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTATTTCCTTATT+AGG + chr1_3:53906126-53906145 Msa0125440:intron 10.0%
!!! TATAAAAAGAAATATTTTCT+TGG - chr1_3:53906329-53906348 None:intergenic 10.0%
!! TAATGCATTATTATATATAA+AGG - chr1_3:53906464-53906483 None:intergenic 10.0%
!! TCCATAAAAATATATAATTT+CGG + chr1_3:53907258-53907277 Msa0125440:intron 10.0%
!!! TATTTTATTATGTATTATGA+TGG - chr1_3:53907426-53907445 None:intergenic 10.0%
!! CATAATAAAATAAAATTAGT+TGG + chr1_3:53907434-53907453 Msa0125440:intron 10.0%
!! AAATTTATCAAAAACATTAT+AGG + chr1_3:53907514-53907533 Msa0125440:intron 10.0%
!!! TTAACTTTAACTAATTTTAT+GGG - chr1_3:53908376-53908395 None:intergenic 10.0%
!!! TAAGCAATATTTAATTTATT+TGG - chr1_3:53908923-53908942 None:intergenic 10.0%
!!! ATTTTTATCAATAAAAGTTT+AGG + chr1_3:53913127-53913146 Msa0125440:intron 10.0%
!!! AAAAATTATACTTTTTCAAA+AGG + chr1_3:53913902-53913921 Msa0125440:three_prime_UTR 10.0%
!! AAATAAAACAAGTAAAAAAG+TGG - chr1_3:53905346-53905365 None:intergenic 15.0%
!!! ATACATTAAGCAATATTTTA+TGG + chr1_3:53905726-53905745 Msa0125440:intron 15.0%
!!! TACATTAAGCAATATTTTAT+GGG + chr1_3:53905727-53905746 Msa0125440:intron 15.0%
!!! TATTTTGGATTATTAAAAAG+TGG - chr1_3:53905775-53905794 None:intergenic 15.0%
!! AATGAAGATGAATAAAATAT+AGG - chr1_3:53905925-53905944 None:intergenic 15.0%
!!! CACTCAATTTTTTTTTTTAA+GGG + chr1_3:53906047-53906066 Msa0125440:intron 15.0%
!! CATTAACAATTTAACATAAA+TGG + chr1_3:53906585-53906604 Msa0125440:intron 15.0%
!!! AAAAAGTAGTTTTTTAAAGA+TGG - chr1_3:53906670-53906689 None:intergenic 15.0%
!!! ATCTTTAAAAAACTACTTTT+TGG + chr1_3:53906669-53906688 Msa0125440:intron 15.0%
!!! TCTTTAAAAAACTACTTTTT+GGG + chr1_3:53906670-53906689 Msa0125440:intron 15.0%
!! AATAATACCTTAAAAATAGT+TGG - chr1_3:53906749-53906768 None:intergenic 15.0%
!!! ACCGAAATTATATATTTTTA+TGG - chr1_3:53907262-53907281 None:intergenic 15.0%
!! AATAGTTATCTTAAAAACTT+TGG + chr1_3:53907486-53907505 Msa0125440:intron 15.0%
!! TATTATAACTTTATTAGCAA+TGG + chr1_3:53907681-53907700 Msa0125440:intron 15.0%
!!! ATATATATCTTTTAGAAAGA+AGG - chr1_3:53908096-53908115 None:intergenic 15.0%
!!! CTTAACTTTAACTAATTTTA+TGG - chr1_3:53908377-53908396 None:intergenic 15.0%
!!! TATTTGTTGTTATAAAAATC+AGG + chr1_3:53909334-53909353 Msa0125440:intron 15.0%
!!! TCAAATAATAACTAATTTTG+AGG + chr1_3:53909385-53909404 Msa0125440:five_prime_UTR 15.0%
!!! TCAAAAGTTTTAATAATTGT+TGG + chr1_3:53910185-53910204 Msa0125440:intron 15.0%
!!! CAAAAGTTTTAATAATTGTT+GGG + chr1_3:53910186-53910205 Msa0125440:intron 15.0%
!! TATTAGACATGTAAAAAATT+AGG + chr1_3:53910764-53910783 Msa0125440:intron 15.0%
!!! TTTTTTTTTTAGATAAGCAA+TGG + chr1_3:53911076-53911095 Msa0125440:intron 15.0%
!! ATAAAAATAGAAGAATTCAA+CGG - chr1_3:53913115-53913134 None:intergenic 15.0%
!! TTTGATCTAGATTTATAATA+TGG - chr1_3:53913548-53913567 None:intergenic 15.0%
!!! TCCATTTTATTAAAGACTTT+TGG + chr1_3:53905023-53905042 Msa0125440:five_prime_UTR 20.0%
!! TCCAAAAGTCTTTAATAAAA+TGG - chr1_3:53905027-53905046 None:intergenic 20.0%
!! TAATTGTTCATAATTCATTG+AGG + chr1_3:53905397-53905416 Msa0125440:intron 20.0%
!!! GCACTCAATTTTTTTTTTTA+AGG + chr1_3:53906046-53906065 Msa0125440:intron 20.0%
!! ACTAGTTAAACAACTAAAAA+TGG + chr1_3:53906235-53906254 Msa0125440:intron 20.0%
!!! TAGTTAGATTTCACTTTTTA+AGG + chr1_3:53906406-53906425 Msa0125440:intron 20.0%
!! TAATATCTTTAATCCTTGAA+AGG - chr1_3:53906884-53906903 None:intergenic 20.0%
!! TGATTGATATTTCATCATTA+AGG - chr1_3:53907082-53907101 None:intergenic 20.0%
!! ATATATAATTTCGGTTCATA+AGG + chr1_3:53907267-53907286 Msa0125440:intron 20.0%
!! AATATAATTGATCCATTTCA+AGG - chr1_3:53907652-53907671 None:intergenic 20.0%
!!! AGAATATTGATAATGTAACA+TGG + chr1_3:53907711-53907730 Msa0125440:intron 20.0%
!!! TTATTTTTGGCAAATGATTA+GGG + chr1_3:53907910-53907929 Msa0125440:five_prime_UTR 20.0%
!!! GTTTGTTTATTTGTTTTCTT+TGG + chr1_3:53908324-53908343 Msa0125440:intron 20.0%
!! ATAACAACAAATAGTTAATG+TGG - chr1_3:53909327-53909346 None:intergenic 20.0%
!!! AATAATAACTAATTTTGAGG+TGG + chr1_3:53909388-53909407 Msa0125440:five_prime_UTR 20.0%
!!! ATTTATCTTCCTTTTCTTAA+GGG - chr1_3:53909473-53909492 None:intergenic 20.0%
!!! AATTTATCTTCCTTTTCTTA+AGG - chr1_3:53909474-53909493 None:intergenic 20.0%
!! AATTGTTTCAATAGTTGTTA+CGG - chr1_3:53909508-53909527 None:intergenic 20.0%
!! AAACTCTCTTCATATTAATA+TGG - chr1_3:53909692-53909711 None:intergenic 20.0%
!! AATAATTATGCATTTGAACT+TGG - chr1_3:53909722-53909741 None:intergenic 20.0%
!! AAGTTCAAATGCATAATTAT+TGG + chr1_3:53909721-53909740 Msa0125440:intron 20.0%
!! TTTACGTAAATAGAATAATC+AGG - chr1_3:53910162-53910181 None:intergenic 20.0%
!! AATCAAAGCTTAGTTTATAA+TGG + chr1_3:53910300-53910319 Msa0125440:intron 20.0%
!! TAAAATTAAGTAGTTGCAAA+TGG + chr1_3:53911240-53911259 Msa0125440:intron 20.0%
!! TGGTATAAATTAAGACATTA+TGG + chr1_3:53911743-53911762 Msa0125440:intron 20.0%
!! GTAGTATTTACATGATATTT+AGG - chr1_3:53911939-53911958 None:intergenic 20.0%
!!! TTTTTCCGATATTATATGAT+AGG + chr1_3:53912004-53912023 Msa0125440:intron 20.0%
!! TTCATCCTATCATATAATAT+CGG - chr1_3:53912012-53912031 None:intergenic 20.0%
!!! ATTTTTCCTGAAATAAATCA+AGG + chr1_3:53912145-53912164 Msa0125440:intron 20.0%
!! AATATGATAGGATTATATCT+TGG + chr1_3:53912572-53912591 Msa0125440:CDS 20.0%
!! AAATCATACAAATATAACCA+AGG - chr1_3:53912816-53912835 None:intergenic 20.0%
!! AAATAGTCATTAAAGATACA+TGG + chr1_3:53912880-53912899 Msa0125440:intron 20.0%
!!! ATAAAGGAATATATTTTTCC+AGG + chr1_3:53913009-53913028 Msa0125440:CDS 20.0%
!!! GAATACTATTTTGATTATTG+TGG + chr1_3:53913473-53913492 Msa0125440:CDS 20.0%
! TATGAGAAAGAAGATTACTT+GGG + chr1_3:53905235-53905254 Msa0125440:five_prime_UTR 25.0%
! TTGGATTATTAAAAAGTGGT+CGG - chr1_3:53905771-53905790 None:intergenic 25.0%
! TATTTCCTTATTAGGTTTCT+AGG + chr1_3:53906134-53906153 Msa0125440:intron 25.0%
! ATTTCCTTATTAGGTTTCTA+GGG + chr1_3:53906135-53906154 Msa0125440:intron 25.0%
! AAAAATGGAAAGAAATGACA+AGG + chr1_3:53906250-53906269 Msa0125440:intron 25.0%
!!! CACTTTTTAAGGTAAATAAG+TGG + chr1_3:53906417-53906436 Msa0125440:intron 25.0%
!!! GAATTAGACAACTTTTGATT+CGG + chr1_3:53906546-53906565 Msa0125440:intron 25.0%
!! TGTTGTGGATTTAAAATTTC+TGG - chr1_3:53906940-53906959 None:intergenic 25.0%
! TTTAAATCCACAACAAAAGT+TGG + chr1_3:53906945-53906964 Msa0125440:intron 25.0%
! AGCTAAAATTTATTCCATGT+AGG + chr1_3:53907132-53907151 Msa0125440:intron 25.0%
! TTTCTACCTGAAACAATTAT+TGG - chr1_3:53907307-53907326 None:intergenic 25.0%
!!! CAATCATTTTAAAACCATCA+TGG + chr1_3:53907586-53907605 Msa0125440:intron 25.0%
! TCAAAGAATTCCATCATATT+AGG - chr1_3:53907758-53907777 None:intergenic 25.0%
!!! ATGCATTGAATCCTTATTTT+TGG + chr1_3:53907897-53907916 Msa0125440:five_prime_UTR 25.0%
! CTAATCATTTGCCAAAAATA+AGG - chr1_3:53907911-53907930 None:intergenic 25.0%
!!! CTTATTTTTGGCAAATGATT+AGG + chr1_3:53907909-53907928 Msa0125440:five_prime_UTR 25.0%
!! CAAGTACATAATCGATTTAT+CGG + chr1_3:53907965-53907984 Msa0125440:intron 25.0%
! GAAAGATTGAACTTATACAA+TGG - chr1_3:53908011-53908030 None:intergenic 25.0%
! TATAAGTTCAATCTTTCTGT+AGG + chr1_3:53908014-53908033 Msa0125440:intron 25.0%
! TATATATCCTGTGAAACAAT+TGG + chr1_3:53908109-53908128 Msa0125440:intron 25.0%
! AAACAATTGATCATGAAGTT+TGG - chr1_3:53908289-53908308 None:intergenic 25.0%
!!! TTATTTGTTTTCTTTGGAGA+CGG + chr1_3:53908330-53908349 Msa0125440:intron 25.0%
! AATATATCAGAATTCAGGAT+AGG - chr1_3:53908503-53908522 None:intergenic 25.0%
! CAACTAATATATCAGAATTC+AGG - chr1_3:53908508-53908527 None:intergenic 25.0%
! CTCACAGAATTATGTTAAAA+AGG + chr1_3:53909006-53909025 Msa0125440:five_prime_UTR 25.0%
! ATATCAGTACGATATATCTT+AGG - chr1_3:53909065-53909084 None:intergenic 25.0%
!!! ATATTTCAAGTTGACATATC+CGG + chr1_3:53909081-53909100 Msa0125440:intron 25.0%
! TTGAAATTAATCACATGTGT+TGG - chr1_3:53909133-53909152 None:intergenic 25.0%
! CTATCTTTGTTAATTGTTAC+TGG + chr1_3:53909159-53909178 Msa0125440:intron 25.0%
!! AACTATTGAAACAATTTTGC+AGG + chr1_3:53909512-53909531 Msa0125440:intron 25.0%
! TATGATGAGAGAAGAATTAT+TGG + chr1_3:53909638-53909657 Msa0125440:five_prime_UTR 25.0%
!! AATTATTGGTTGATCTGTAT+TGG + chr1_3:53909735-53909754 Msa0125440:intron 25.0%
!! ATCATGATCAATGCATTTTT+AGG - chr1_3:53909901-53909920 None:intergenic 25.0%
!! GGATTTAGAGTTACAAAAAA+TGG - chr1_3:53909995-53910014 None:intergenic 25.0%
!! TTTTTCTTTTCCCTTGAATA+TGG - chr1_3:53910108-53910127 None:intergenic 25.0%
!!! AAAAGAAAAATCTGGTTTTC+TGG + chr1_3:53910118-53910137 Msa0125440:five_prime_UTR 25.0%
!!! AAAGAAAAATCTGGTTTTCT+GGG + chr1_3:53910119-53910138 Msa0125440:five_prime_UTR 25.0%
!!! ATTTCATGAAGATGGATTAA+AGG + chr1_3:53910276-53910295 Msa0125440:five_prime_UTR 25.0%
! ACATACCTTCCAATAAAATT+GGG - chr1_3:53910927-53910946 None:intergenic 25.0%
! TACATACCTTCCAATAAAAT+TGG - chr1_3:53910928-53910947 None:intergenic 25.0%
!! TTCTAAATTTTGCAAGAACT+GGG + chr1_3:53910949-53910968 Msa0125440:intron 25.0%
! GAAAAAATCATAGTCATTGA+AGG - chr1_3:53911118-53911137 None:intergenic 25.0%
!! TCATTTGTTGATAAAGATGA+AGG + chr1_3:53911356-53911375 Msa0125440:CDS 25.0%
! CTATTAATATACCTTAGTGT+AGG - chr1_3:53911566-53911585 None:intergenic 25.0%
! CTACACTAAGGTATATTAAT+AGG + chr1_3:53911564-53911583 Msa0125440:intron 25.0%
! TAAGTCAAGATATTCTTCTT+TGG + chr1_3:53911812-53911831 Msa0125440:intron 25.0%
! AAACATGAAATTCTTGAGAT+TGG + chr1_3:53912182-53912201 Msa0125440:CDS 25.0%
!! AGTTCTTTTAACAACTTCAA+TGG - chr1_3:53912228-53912247 None:intergenic 25.0%
! ATTGAAGTTGTTAAAAGAAC+TGG + chr1_3:53912227-53912246 Msa0125440:CDS 25.0%
! CTATCATATTTGTATGTCTT+TGG - chr1_3:53912562-53912581 None:intergenic 25.0%
! CAAAGACATACAAATATGAT+AGG + chr1_3:53912560-53912579 Msa0125440:CDS 25.0%
! TGTACTATGTTGGAAATATA+TGG - chr1_3:53912641-53912660 None:intergenic 25.0%
! ATACAAGTTATGTACTATGT+TGG - chr1_3:53912651-53912670 None:intergenic 25.0%
! ATTGTGGAGAAAAAATTTCA+TGG + chr1_3:53913294-53913313 Msa0125440:CDS 25.0%
! ATGAAAAATTCATCAGAACA+TGG + chr1_3:53913450-53913469 Msa0125440:CDS 25.0%
! TGAAAAATTCATCAGAACAT+GGG + chr1_3:53913451-53913470 Msa0125440:CDS 25.0%
!! ATCACAATAGAGAAATTTTG+TGG - chr1_3:53913758-53913777 None:intergenic 25.0%
! CTTGAAAATCGTTAAATTAG+AGG + chr1_3:53913815-53913834 Msa0125440:three_prime_UTR 25.0%
TCATTGAGAAGAAGAAGATA+AGG + chr1_3:53905123-53905142 Msa0125440:five_prime_UTR 30.0%
!! TTTGGTTTCAGCTTATGTTT+TGG + chr1_3:53905186-53905205 Msa0125440:five_prime_UTR 30.0%
GTATGAGAAAGAAGATTACT+TGG + chr1_3:53905234-53905253 Msa0125440:five_prime_UTR 30.0%
TCAATTGCTCATAATTCATG+AGG + chr1_3:53905370-53905389 Msa0125440:intron 30.0%
ACAACTTCACATTGTATCAT+AGG - chr1_3:53905623-53905642 None:intergenic 30.0%
ATTACAAAGGGCTTAATAAC+AGG - chr1_3:53905668-53905687 None:intergenic 30.0%
!!! TGTCTCTGATGGATTTTTTA+AGG - chr1_3:53905883-53905902 None:intergenic 30.0%
TAAGGTAAATAAGTGGTGTT+TGG + chr1_3:53906424-53906443 Msa0125440:intron 30.0%
AAGGTAAATAAGTGGTGTTT+GGG + chr1_3:53906425-53906444 Msa0125440:intron 30.0%
TGTCAACTGAATTATGTTCA+CGG + chr1_3:53906488-53906507 Msa0125440:intron 30.0%
!!! TTTGATTCGGTTTTCATTAG+TGG + chr1_3:53906559-53906578 Msa0125440:intron 30.0%
!!! TAAAAAACTACTTTTTGGGC+TGG + chr1_3:53906674-53906693 Msa0125440:intron 30.0%
GAAAAGAACAGGAAGATATA+TGG + chr1_3:53906700-53906719 Msa0125440:intron 30.0%
!!! GGCACTTGTTTTATCTTATT+TGG - chr1_3:53906728-53906747 None:intergenic 30.0%
!!! ACAAGTGCCAACTATTTTTA+AGG + chr1_3:53906739-53906758 Msa0125440:intron 30.0%
TATCTTTAATCCTTGAAAGG+AGG - chr1_3:53906881-53906900 None:intergenic 30.0%
GTTTGACCAATAATTGTTTC+AGG + chr1_3:53907298-53907317 Msa0125440:intron 30.0%
! TTTCAGGTAGAAATTGATTC+AGG + chr1_3:53907314-53907333 Msa0125440:intron 30.0%
!! TATGATGGATGATGATCAAA+TGG - chr1_3:53907411-53907430 None:intergenic 30.0%
! ACACTGTATTGGATATTTTC+AGG - chr1_3:53907557-53907576 None:intergenic 30.0%
TGCATTTGTATACCTTGAAA+TGG + chr1_3:53907637-53907656 Msa0125440:intron 30.0%
GAATTCCATCATATTAGGAT+AGG - chr1_3:53907753-53907772 None:intergenic 30.0%
AGTTCAAAGATGATGCTATA+AGG + chr1_3:53907942-53907961 Msa0125440:five_prime_UTR 30.0%
TCTCAATTATGCAATTCTCA+GGG - chr1_3:53908222-53908241 None:intergenic 30.0%
TTCTCAATTATGCAATTCTC+AGG - chr1_3:53908223-53908242 None:intergenic 30.0%
!! TATTTGTTTTCTTTGGAGAC+GGG + chr1_3:53908331-53908350 Msa0125440:intron 30.0%
CTTCAATTTGTACTCAACTA+TGG + chr1_3:53908415-53908434 Msa0125440:intron 30.0%
TGTATGTAGATTCCAATTTG+TGG + chr1_3:53908758-53908777 Msa0125440:intron 30.0%
! TTCCAATTTGTGGTTCTATT+TGG + chr1_3:53908768-53908787 Msa0125440:five_prime_UTR 30.0%
AAAGAAGAGCTTCAGAATAA+TGG + chr1_3:53909359-53909378 Msa0125440:five_prime_UTR 30.0%
AAGAAGAGCTTCAGAATAAT+GGG + chr1_3:53909360-53909379 Msa0125440:five_prime_UTR 30.0%
!!! AACTAATTTTGAGGTGGATT+TGG + chr1_3:53909394-53909413 Msa0125440:five_prime_UTR 30.0%
TTCAAGGGAAAAGAAAAATC+TGG + chr1_3:53910110-53910129 Msa0125440:five_prime_UTR 30.0%
!!! AAGAAAAATCTGGTTTTCTG+GGG + chr1_3:53910120-53910139 Msa0125440:five_prime_UTR 30.0%
! AGTAAATGTTTGTGCTTTTC+AGG + chr1_3:53910247-53910266 Msa0125440:intron 30.0%
TAAAGAACCAGTGGTAATAA+AGG - chr1_3:53910564-53910583 None:intergenic 30.0%
! TTACAAGACATTTTTGTGTG+TGG - chr1_3:53910638-53910657 None:intergenic 30.0%
! TACTGATACATTTTACGTTG+AGG + chr1_3:53910808-53910827 Msa0125440:intron 30.0%
CATACCTTCCAATAAAATTG+GGG - chr1_3:53910926-53910945 None:intergenic 30.0%
! CTTCTAAATTTTGCAAGAAC+TGG + chr1_3:53910948-53910967 Msa0125440:intron 30.0%
CTTCAGATTGAAACTGTATT+TGG + chr1_3:53911030-53911049 Msa0125440:intron 30.0%
!!! AGGTCTCTTGAATTTTTTCT+TGG + chr1_3:53911376-53911395 Msa0125440:CDS 30.0%
ATTAAAAACACCAATGCACA+TGG - chr1_3:53911462-53911481 None:intergenic 30.0%
!! TGCATTGGTGTTTTTAATGT+AGG + chr1_3:53911464-53911483 Msa0125440:intron 30.0%
GGATGAATTTAAATCTCTGT+TGG - chr1_3:53911499-53911518 None:intergenic 30.0%
TAAAGACACATGAGAATAGT+TGG - chr1_3:53911600-53911619 None:intergenic 30.0%
AACTATTCTCATGTGTCTTT+AGG + chr1_3:53911599-53911618 Msa0125440:intron 30.0%
ACTATTCTCATGTGTCTTTA+GGG + chr1_3:53911600-53911619 Msa0125440:intron 30.0%
AAACCAGCCGTAAATAAAAT+CGG - chr1_3:53911637-53911656 None:intergenic 30.0%
! GAGTATTTTTCCTTGAAACA+TGG - chr1_3:53911684-53911703 None:intergenic 30.0%
! CATTTCTAGACATTATGATC+TGG + chr1_3:53911723-53911742 Msa0125440:CDS 30.0%
AGAAGGAAAAATCAGAAACA+TGG - chr1_3:53911770-53911789 None:intergenic 30.0%
GGAGTATAAAAAATCACAGA+AGG - chr1_3:53911787-53911806 None:intergenic 30.0%
AGAATATCTTGACTTAGTGT+GGG - chr1_3:53911808-53911827 None:intergenic 30.0%
AAGAATATCTTGACTTAGTG+TGG - chr1_3:53911809-53911828 None:intergenic 30.0%
ATTGAAAAAGTGAGTGACTT+TGG + chr1_3:53912077-53912096 Msa0125440:intron 30.0%
!! TTCTAGCCTTGATTTATTTC+AGG - chr1_3:53912154-53912173 None:intergenic 30.0%
GAAAAAAGAGTTAAAGATGC+TGG + chr1_3:53912299-53912318 Msa0125440:CDS 30.0%
ACACAGTAACAAGATTATAG+AGG - chr1_3:53912450-53912469 None:intergenic 30.0%
TTGTTGATGTTATCAAACCA+TGG + chr1_3:53912491-53912510 Msa0125440:intron 30.0%
GAATACATGGAAGAATTCTT+TGG + chr1_3:53912709-53912728 Msa0125440:CDS 30.0%
! ATCAAACTTTTGCTTTACCT+TGG + chr1_3:53912796-53912815 Msa0125440:intron 30.0%
TAGATTATAAGCTTTCTGCA+AGG + chr1_3:53912848-53912867 Msa0125440:intron 30.0%
CATTAAAGATACATGGTTGT+TGG + chr1_3:53912887-53912906 Msa0125440:intron 30.0%
TTTGTGCTAACTATTGAAGA+TGG + chr1_3:53912918-53912937 Msa0125440:intron 30.0%
TCTATAGTTCATATCAATCC+CGG + chr1_3:53912948-53912967 Msa0125440:intron 30.0%
! AAGGAATATATTTTTCCAGG+AGG + chr1_3:53913012-53913031 Msa0125440:CDS 30.0%
TATTAGATTGTACCATAGTC+TGG - chr1_3:53913085-53913104 None:intergenic 30.0%
GCGAATATTCAGTTAAGTAA+GGG - chr1_3:53913218-53913237 None:intergenic 30.0%
TGCGAATATTCAGTTAAGTA+AGG - chr1_3:53913219-53913238 None:intergenic 30.0%
ACTATCAAACACTAAGATTG+TGG + chr1_3:53913278-53913297 Msa0125440:CDS 30.0%
GGAGAAAAAATTTCATGGAA+AGG + chr1_3:53913299-53913318 Msa0125440:CDS 30.0%
! TTGTGTTCTCAGTGAAATTT+TGG + chr1_3:53913415-53913434 Msa0125440:intron 30.0%
!!! TATTTTGATTATTGTGGTGC+TGG + chr1_3:53913479-53913498 Msa0125440:CDS 30.0%
TTTCTTGTCTCAACTTGTCA+CGG + chr1_3:53904944-53904963 Msa0125440:five_prime_UTR 35.0%
AACAAGTGAGTGAACAAAAG+TGG - chr1_3:53904973-53904992 None:intergenic 35.0%
TTTGTTCACTCACTTGTTTG+TGG + chr1_3:53904975-53904994 Msa0125440:five_prime_UTR 35.0%
TAAAATGGACACGTTATTCG+TGG - chr1_3:53905012-53905031 None:intergenic 35.0%
CATTGTTGCACAAAAAGAGA+AGG + chr1_3:53905063-53905082 Msa0125440:five_prime_UTR 35.0%
GCAAAAACTGTTAATGCTGA+TGG + chr1_3:53905265-53905284 Msa0125440:five_prime_UTR 35.0%
!! TAATGCTGATGGTGTTGATT+TGG + chr1_3:53905276-53905295 Msa0125440:five_prime_UTR 35.0%
TATTGAAGACCATGAAACCA+AGG - chr1_3:53905303-53905322 None:intergenic 35.0%
TTGGTTTCATGGTCTTCAAT+AGG + chr1_3:53905302-53905321 Msa0125440:five_prime_UTR 35.0%
TGGTTTCATGGTCTTCAATA+GGG + chr1_3:53905303-53905322 Msa0125440:five_prime_UTR 35.0%
! ATGCTTCACTTTCACTGTTT+TGG - chr1_3:53905509-53905528 None:intergenic 35.0%
!! ACAGTGAAAGTGAAGCATTT+TGG + chr1_3:53905511-53905530 Msa0125440:intron 35.0%
ATTAAGCCCTTTGTAATGTG+TGG + chr1_3:53905671-53905690 Msa0125440:intron 35.0%
! TTATTAGGTTTCTAGGGACA+CGG + chr1_3:53906141-53906160 Msa0125440:intron 35.0%
GTGTTAAACAATGCGATCAA+AGG - chr1_3:53906177-53906196 None:intergenic 35.0%
AATGTTAACCAATGTCCTTG+AGG + chr1_3:53906211-53906230 Msa0125440:intron 35.0%
TAATTTCTTAACTAGTGCCC+AGG + chr1_3:53906347-53906366 Msa0125440:intron 35.0%
AATTTCTTAACTAGTGCCCA+GGG + chr1_3:53906348-53906367 Msa0125440:intron 35.0%
AGGTAAATAAGTGGTGTTTG+GGG + chr1_3:53906426-53906445 Msa0125440:intron 35.0%
ATGCAAATGTAGCATTCCTT+TGG + chr1_3:53907012-53907031 Msa0125440:intron 35.0%
TCCTTTGGTTAACTAGATGA+TGG + chr1_3:53907027-53907046 Msa0125440:intron 35.0%
TTCCCACAACTTATAACAGT+TGG + chr1_3:53907197-53907216 Msa0125440:intron 35.0%
GTCCAACTGTTATAAGTTGT+GGG - chr1_3:53907202-53907221 None:intergenic 35.0%
AGTCCAACTGTTATAAGTTG+TGG - chr1_3:53907203-53907222 None:intergenic 35.0%
! CTTCTGAACAATTCGTCTTT+TGG + chr1_3:53907339-53907358 Msa0125440:intron 35.0%
ATCAAGTAATTGAGCTCAAG+TGG - chr1_3:53907378-53907397 None:intergenic 35.0%
ATCCAATACAGTGTGCAATA+TGG + chr1_3:53907563-53907582 Msa0125440:intron 35.0%
!! TTTTCAAGATCAAGCCATGA+TGG - chr1_3:53907603-53907622 None:intergenic 35.0%
! TGTAACATGGACTATTGAAC+AGG + chr1_3:53907724-53907743 Msa0125440:intron 35.0%
! ATGGAATTCTTTGAGAGTCT+TGG + chr1_3:53907764-53907783 Msa0125440:five_prime_UTR 35.0%
TTGAGAAATGAGAGGAAATG+AGG - chr1_3:53908535-53908554 None:intergenic 35.0%
TAACTGCATTGAGAAATGAG+AGG - chr1_3:53908543-53908562 None:intergenic 35.0%
ACTCATTGTGATCCATATCT+GGG - chr1_3:53908587-53908606 None:intergenic 35.0%
GACCAAATAGAACCACAAAT+TGG - chr1_3:53908773-53908792 None:intergenic 35.0%
AACACTAACACACACATACA+CGG - chr1_3:53909215-53909234 None:intergenic 35.0%
TGCTTAAGCTGCAAGATATA+TGG - chr1_3:53909290-53909309 None:intergenic 35.0%
TTGGTTTCATCGTCTGAAAA+AGG + chr1_3:53909413-53909432 Msa0125440:five_prime_UTR 35.0%
! CTTTTCTTAAGGGAAAGGAA+AGG - chr1_3:53909463-53909482 None:intergenic 35.0%
CTTTCCTTTCCCTTAAGAAA+AGG + chr1_3:53909461-53909480 Msa0125440:intron 35.0%
! TCTTCCTTTTCTTAAGGGAA+AGG - chr1_3:53909468-53909487 None:intergenic 35.0%
!! AGTGTATGATGGATGCATAA+TGG + chr1_3:53909568-53909587 Msa0125440:five_prime_UTR 35.0%
!! ACCTGATGCTTTGAGATTAT+TGG + chr1_3:53909601-53909620 Msa0125440:five_prime_UTR 35.0%
!! CCTGATGCTTTGAGATTATT+GGG + chr1_3:53909602-53909621 Msa0125440:five_prime_UTR 35.0%
! GTGCTTTTCAATATGCATAC+AGG + chr1_3:53909660-53909679 Msa0125440:five_prime_UTR 35.0%
ACAAAGTTTGTGTCACATAC+TGG + chr1_3:53909847-53909866 Msa0125440:five_prime_UTR 35.0%
! ATACTGGCTAAACATTCTTC+AGG + chr1_3:53909863-53909882 Msa0125440:five_prime_UTR 35.0%
TTGCAGAATATTGAAGAAGC+AGG + chr1_3:53909965-53909984 Msa0125440:intron 35.0%
TCTAAATCCTGATCATGTAC+CGG + chr1_3:53910006-53910025 Msa0125440:five_prime_UTR 35.0%
TAGAGCTAGACCATATTCAA+GGG + chr1_3:53910095-53910114 Msa0125440:five_prime_UTR 35.0%
GAATAATCAGGAATGTACCT+TGG - chr1_3:53910150-53910169 None:intergenic 35.0%
AATAATTGTTGGGTCACGAA+TGG + chr1_3:53910196-53910215 Msa0125440:intron 35.0%
!!! TGTTTGTGCTTTTCAGGTTA+TGG + chr1_3:53910253-53910272 Msa0125440:intron 35.0%
GGTTATGGATTTCATGAAGA+TGG + chr1_3:53910268-53910287 Msa0125440:intron 35.0%
! TTTGCAAGGGAACTCTTTTT+AGG - chr1_3:53910360-53910379 None:intergenic 35.0%
!!! TCTGTTTTGTTTCAACAGGT+TGG - chr1_3:53910389-53910408 None:intergenic 35.0%
!!! GTTGTCTGTTTTGTTTCAAC+AGG - chr1_3:53910393-53910412 None:intergenic 35.0%
AAGTGTAAGACTGAACTTTC+AGG + chr1_3:53910415-53910434 Msa0125440:intron 35.0%
!! AAGAAGGTACCATGTGTTTA+GGG - chr1_3:53910496-53910515 None:intergenic 35.0%
TACCTTCTTGGAAAGAACTT+GGG + chr1_3:53910507-53910526 Msa0125440:five_prime_UTR 35.0%
TCAGGAATCTAGTTACAAAG+AGG - chr1_3:53910538-53910557 None:intergenic 35.0%
AGGAACAATGTTTCCTTTGA+GGG + chr1_3:53910854-53910873 Msa0125440:five_prime_UTR 35.0%
TGAACTCTCAAAACACTCTT+GGG - chr1_3:53910899-53910918 None:intergenic 35.0%
! TTCACAGTCCCCAATTTTAT+TGG + chr1_3:53910915-53910934 Msa0125440:five_prime_UTR 35.0%
! TTGTCACTTCTATAGCTAGT+AGG - chr1_3:53910990-53911009 None:intergenic 35.0%
TGACAATGAAACGTAGACAT+TGG - chr1_3:53911150-53911169 None:intergenic 35.0%
TTTGATGTTTGTGTCTGTGT+TGG + chr1_3:53911178-53911197 Msa0125440:intron 35.0%
ATCATCTGTACATGTTTGTC+AGG + chr1_3:53911280-53911299 Msa0125440:intron 35.0%
CATTAATGTATGCATCTGCT+AGG - chr1_3:53911328-53911347 None:intergenic 35.0%
CTAGCAGATGCATACATTAA+TGG + chr1_3:53911326-53911345 Msa0125440:CDS 35.0%
!!! TTTTTTCTTGGTAAGCATGC+TGG + chr1_3:53911388-53911407 Msa0125440:intron 35.0%
TATGCAGTGTTTGTATCTTC+AGG + chr1_3:53911420-53911439 Msa0125440:intron 35.0%
! CTTACCTGCTCTTCAATTTT+GGG - chr1_3:53911524-53911543 None:intergenic 35.0%
! ACTTACCTGCTCTTCAATTT+TGG - chr1_3:53911525-53911544 None:intergenic 35.0%
ATGAATTGAAGCCTACACTA+AGG + chr1_3:53911552-53911571 Msa0125440:intron 35.0%
CTATTCTCATGTGTCTTTAG+GGG + chr1_3:53911601-53911620 Msa0125440:intron 35.0%
!!! GTGGACACCGATTTTATTTA+CGG + chr1_3:53911627-53911646 Msa0125440:CDS 35.0%
AAGGAAAAATACTCTCACAC+AGG + chr1_3:53911690-53911709 Msa0125440:CDS 35.0%
! TGAACTCTTTGCACTTTTCT+TGG + chr1_3:53911849-53911868 Msa0125440:CDS 35.0%
! ATACTCATGTGCAGTTTTCA+AGG + chr1_3:53911885-53911904 Msa0125440:CDS 35.0%
GAAATTCTTGAGATTGGATG+TGG + chr1_3:53912188-53912207 Msa0125440:CDS 35.0%
TGTTATCAAACCATGGTTAC+AGG + chr1_3:53912498-53912517 Msa0125440:intron 35.0%
TTGATATTGTCCTGTAACCA+TGG - chr1_3:53912511-53912530 None:intergenic 35.0%
TGTATGTCTTTGGCAATTGT+CGG - chr1_3:53912552-53912571 None:intergenic 35.0%
AGTGAAATGATAGAAGCTGT+TGG + chr1_3:53912682-53912701 Msa0125440:intron 35.0%
TGGTTGTTGTGAATCAGTAA+TGG + chr1_3:53912729-53912748 Msa0125440:CDS 35.0%
GAATCAGTAATGGCAAATGA+TGG + chr1_3:53912739-53912758 Msa0125440:CDS 35.0%
ATGAGCGTTATGATGAGTAT+AGG + chr1_3:53912971-53912990 Msa0125440:CDS 35.0%
!! GCGCAGTTCTGATTTTATAA+AGG + chr1_3:53912993-53913012 Msa0125440:CDS 35.0%
AAAATTTCATGGAAAGGCAG+AGG + chr1_3:53913305-53913324 Msa0125440:CDS 35.0%
CAACAGTGATATGTTTCATG+TGG + chr1_3:53913594-53913613 Msa0125440:intron 35.0%
ATATGTTTCATGTGGCATGT+AGG + chr1_3:53913602-53913621 Msa0125440:intron 35.0%
GTATTCTGCTAGAATGAATG+AGG - chr1_3:53913697-53913716 None:intergenic 35.0%
GATATGAGAGTTGCAGTAGT+TGG + chr1_3:53905148-53905167 Msa0125440:five_prime_UTR 40.0%
!!! TCAGCTTATGTTTTGGCCAA+AGG + chr1_3:53905193-53905212 Msa0125440:five_prime_UTR 40.0%
GAGAAAGAAGATTACTTGGG+AGG + chr1_3:53905238-53905257 Msa0125440:five_prime_UTR 40.0%
! TGATTTGGACCTTGGTTTCA+TGG + chr1_3:53905291-53905310 Msa0125440:five_prime_UTR 40.0%
CCAGTACCACACATTACAAA+GGG - chr1_3:53905680-53905699 None:intergenic 40.0%
TCCAGTACCACACATTACAA+AGG - chr1_3:53905681-53905700 None:intergenic 40.0%
GTGTCCCTAGAAACCTAATA+AGG - chr1_3:53906142-53906161 None:intergenic 40.0%
GTTGTTTAACTAGTGCCTCA+AGG - chr1_3:53906229-53906248 None:intergenic 40.0%
ATTTCTTAACTAGTGCCCAG+GGG + chr1_3:53906349-53906368 Msa0125440:intron 40.0%
AAAAATTAACTGGTGCCCCT+GGG - chr1_3:53906367-53906386 None:intergenic 40.0%
AAAAAATTAACTGGTGCCCC+TGG - chr1_3:53906368-53906387 None:intergenic 40.0%
! TGTTCACGGAACTTGTTTGA+CGG + chr1_3:53906502-53906521 Msa0125440:intron 40.0%
ATGAAGTCATCCTCCTTTCA+AGG + chr1_3:53906868-53906887 Msa0125440:intron 40.0%
TTTGCATGAAGGAACTGTCA+TGG - chr1_3:53906999-53907018 None:intergenic 40.0%
GGAATGCTACATTTGCATGA+AGG - chr1_3:53907010-53907029 None:intergenic 40.0%
GCCATCATCTAGTTAACCAA+AGG - chr1_3:53907031-53907050 None:intergenic 40.0%
! CTGAACAATTCGTCTTTTGG+TGG + chr1_3:53907342-53907361 Msa0125440:intron 40.0%
TGCCATATTGCACACTGTAT+TGG - chr1_3:53907568-53907587 None:intergenic 40.0%
GGTGACCTATCCTAATATGA+TGG + chr1_3:53907745-53907764 Msa0125440:intron 40.0%
TGAGAGTCTTGGAGTTGAAA+TGG + chr1_3:53907775-53907794 Msa0125440:five_prime_UTR 40.0%
! TTTTCTGTCAGCCTAGACAA+AGG + chr1_3:53907815-53907834 Msa0125440:five_prime_UTR 40.0%
ACGGATACCAATTGTTTCAC+AGG - chr1_3:53908119-53908138 None:intergenic 40.0%
! CAATTGGTATCCGTTGACTA+TGG + chr1_3:53908125-53908144 Msa0125440:intron 40.0%
GGAATATGAGCCATAGTCAA+CGG - chr1_3:53908138-53908157 None:intergenic 40.0%
GAGTGTATGTCCACTTATCA+GGG - chr1_3:53908159-53908178 None:intergenic 40.0%
TGTACTCAACTATGGAAAGC+TGG + chr1_3:53908423-53908442 Msa0125440:intron 40.0%
CTTGACAATGTAGTGTAGAG+CGG + chr1_3:53908467-53908486 Msa0125440:intron 40.0%
GCTTGAGAATAACCCAGATA+TGG + chr1_3:53908572-53908591 Msa0125440:five_prime_UTR 40.0%
GACTCATTGTGATCCATATC+TGG - chr1_3:53908588-53908607 None:intergenic 40.0%
TATGGATCACAATGAGTCTC+TGG + chr1_3:53908590-53908609 Msa0125440:five_prime_UTR 40.0%
ATGGATCACAATGAGTCTCT+GGG + chr1_3:53908591-53908610 Msa0125440:five_prime_UTR 40.0%
TTTGTCCTAGTACCTGAAGT+AGG - chr1_3:53908862-53908881 None:intergenic 40.0%
TGTGTGTGTTAGTGTTTCGT+AGG + chr1_3:53909219-53909238 Msa0125440:intron 40.0%
AACCATTCCCAAAGTGATCT+AGG - chr1_3:53909246-53909265 None:intergenic 40.0%
!! TTTGCAGGATGTGTCGTTTA+CGG + chr1_3:53909527-53909546 Msa0125440:intron 40.0%
!! GGTTCTGAAGAAGTGTATGA+TGG + chr1_3:53909557-53909576 Msa0125440:five_prime_UTR 40.0%
! CCCAATAATCTCAAAGCATC+AGG - chr1_3:53909605-53909624 None:intergenic 40.0%
!! TGGAGTGCTTGGAATTTTCT+TGG + chr1_3:53909813-53909832 Msa0125440:five_prime_UTR 40.0%
TGGCTAAACATTCTTCAGGT+TGG + chr1_3:53909867-53909886 Msa0125440:intron 40.0%
ACATTGCTTAAGTGGTCAAC+TGG + chr1_3:53910034-53910053 Msa0125440:five_prime_UTR 40.0%
! CTCTACTGAAGCTTTGTATG+CGG - chr1_3:53910080-53910099 None:intergenic 40.0%
GTAGAGCTAGACCATATTCA+AGG + chr1_3:53910094-53910113 Msa0125440:five_prime_UTR 40.0%
CTTAGAATGTGAGATCTCTC+CGG - chr1_3:53910229-53910248 None:intergenic 40.0%
!!! GTTTTGTTTCAACAGGTTGG+TGG - chr1_3:53910386-53910405 None:intergenic 40.0%
ATTGCAGCTCATGGAATTCT+TGG + chr1_3:53910446-53910465 Msa0125440:five_prime_UTR 40.0%
!! CAAGAAGGTACCATGTGTTT+AGG - chr1_3:53910497-53910516 None:intergenic 40.0%
CTAAACACATGGTACCTTCT+TGG + chr1_3:53910495-53910514 Msa0125440:five_prime_UTR 40.0%
GTACCTTCTTGGAAAGAACT+TGG + chr1_3:53910506-53910525 Msa0125440:five_prime_UTR 40.0%
ACCTTCTTGGAAAGAACTTG+GGG + chr1_3:53910508-53910527 Msa0125440:five_prime_UTR 40.0%
CAGTGGTAATAAAGGAACTC+AGG - chr1_3:53910556-53910575 None:intergenic 40.0%
CTGAGTTCCTTTATTACCAC+TGG + chr1_3:53910554-53910573 Msa0125440:five_prime_UTR 40.0%
AACTCACGTTAAAGAACCAG+TGG - chr1_3:53910573-53910592 None:intergenic 40.0%
! GTTGAGGTGTTACAGCTTAT+TGG + chr1_3:53910824-53910843 Msa0125440:intron 40.0%
TGTTACAGCTTATTGGAGGA+AGG + chr1_3:53910831-53910850 Msa0125440:intron 40.0%
GAGGAACAATGTTTCCTTTG+AGG + chr1_3:53910853-53910872 Msa0125440:five_prime_UTR 40.0%
! AATGTTTCCTTTGAGGGAAC+TGG + chr1_3:53910860-53910879 Msa0125440:five_prime_UTR 40.0%
! ATGTTTCCTTTGAGGGAACT+GGG + chr1_3:53910861-53910880 Msa0125440:five_prime_UTR 40.0%
AACTCTCAAAACACTCTTGG+GGG - chr1_3:53910897-53910916 None:intergenic 40.0%
GAACTCTCAAAACACTCTTG+GGG - chr1_3:53910898-53910917 None:intergenic 40.0%
GTGAACTCTCAAAACACTCT+TGG - chr1_3:53910900-53910919 None:intergenic 40.0%
! CAGTCCCCAATTTTATTGGA+AGG + chr1_3:53910919-53910938 Msa0125440:five_prime_UTR 40.0%
GAACTGGGATCAATGAATGA+TGG + chr1_3:53910964-53910983 Msa0125440:intron 40.0%
CTCTTTACTTCCATGTGCAT+TGG + chr1_3:53911449-53911468 Msa0125440:intron 40.0%
!!! ACACCGATTTTATTTACGGC+TGG + chr1_3:53911631-53911650 Msa0125440:CDS 40.0%
GACATCTGCAAAGTTCTTCA+TGG + chr1_3:53911657-53911676 Msa0125440:CDS 40.0%
TCTTCATGGACCATGTTTCA+AGG + chr1_3:53911671-53911690 Msa0125440:CDS 40.0%
TTCTTGAGATTGGATGTGGA+TGG + chr1_3:53912192-53912211 Msa0125440:CDS 40.0%
TCTTGAGATTGGATGTGGAT+GGG + chr1_3:53912193-53912212 Msa0125440:CDS 40.0%
AGAACTGGTTGCAAATACAC+CGG + chr1_3:53912242-53912261 Msa0125440:CDS 40.0%
CTTCTCTGACAAAGTGATAC+CGG - chr1_3:53912264-53912283 None:intergenic 40.0%
! GCTTGTTGATCAATACCTGA+AGG - chr1_3:53912325-53912344 None:intergenic 40.0%
AGCTGTTGGACATGAATACA+TGG + chr1_3:53912696-53912715 Msa0125440:CDS 40.0%
!! TGATGGACTTCTTGTTCTTC+AGG + chr1_3:53912756-53912775 Msa0125440:CDS 40.0%
TACTCATCATAACGCTCATC+CGG - chr1_3:53912970-53912989 None:intergenic 40.0%
GATGTGATCCTACTTAGAGA+GGG - chr1_3:53913045-53913064 None:intergenic 40.0%
TGATGTGATCCTACTTAGAG+AGG - chr1_3:53913046-53913065 None:intergenic 40.0%
AAGTAGGATCACATCATCCA+TGG + chr1_3:53913050-53913069 Msa0125440:CDS 40.0%
ATTGTACCATAGTCTGGATG+CGG - chr1_3:53913079-53913098 None:intergenic 40.0%
!!! CTCAGTGAAATTTTGGCTCT+AGG + chr1_3:53913422-53913441 Msa0125440:intron 40.0%
!! GTTTTAAGTCACGCACACTT+GGG + chr1_3:53913501-53913520 Msa0125440:CDS 40.0%
TCAGTGATCCATACAAAAGC+TGG + chr1_3:53913658-53913677 Msa0125440:CDS 40.0%
ATGAATGAGGCTTGTGCTTA+GGG - chr1_3:53913684-53913703 None:intergenic 40.0%
AATGAATGAGGCTTGTGCTT+AGG - chr1_3:53913685-53913704 None:intergenic 40.0%
TAGTTGTTTGCCACTCCAAA+AGG - chr1_3:53913852-53913871 None:intergenic 40.0%
GTTCACTCACTTGTTTGTGG+AGG + chr1_3:53904978-53904997 Msa0125440:five_prime_UTR 45.0%
ATGAGAGTTGCAGTAGTTGG+TGG + chr1_3:53905151-53905170 Msa0125440:five_prime_UTR 45.0%
!!! GCTTATGTTTTGGCCAAAGG+TGG + chr1_3:53905196-53905215 Msa0125440:five_prime_UTR 45.0%
!! AACCACATTGACTCCACCTT+TGG - chr1_3:53905212-53905231 None:intergenic 45.0%
!! GATGGTGTTGATTTGGACCT+TGG + chr1_3:53905283-53905302 Msa0125440:five_prime_UTR 45.0%
CCCTTTGTAATGTGTGGTAC+TGG + chr1_3:53905677-53905696 Msa0125440:intron 45.0%
ACAACTTCGAGTGTCTCTGA+TGG - chr1_3:53905894-53905913 None:intergenic 45.0%
AACTAGTGCCTCAAGGACAT+TGG - chr1_3:53906222-53906241 None:intergenic 45.0%
! TGGGCTGGAATGAAAAGAAC+AGG + chr1_3:53906689-53906708 Msa0125440:intron 45.0%
! CCACATGCCAACTTTTGTTG+TGG - chr1_3:53906955-53906974 None:intergenic 45.0%
CCACAACAAAAGTTGGCATG+TGG + chr1_3:53906952-53906971 Msa0125440:intron 45.0%
AAAAGAGTGACGAGCCTACA+TGG - chr1_3:53907149-53907168 None:intergenic 45.0%
GGCTCATATTCCCTGATAAG+TGG + chr1_3:53908146-53908165 Msa0125440:intron 45.0%
CGAGTGTATGTCCACTTATC+AGG - chr1_3:53908160-53908179 None:intergenic 45.0%
CGCTCTACACTACATTGTCA+AGG - chr1_3:53908469-53908488 None:intergenic 45.0%
TGGATCACAATGAGTCTCTG+GGG + chr1_3:53908592-53908611 Msa0125440:five_prime_UTR 45.0%
ATTTGGTCGTGCTCTTCTGA+AGG + chr1_3:53908785-53908804 Msa0125440:five_prime_UTR 45.0%
TCGTAATCACCACCTACTTC+AGG + chr1_3:53908847-53908866 Msa0125440:five_prime_UTR 45.0%
CATCTGACAGTTAGCCATTG+CGG - chr1_3:53908983-53909002 None:intergenic 45.0%
ATCCGGTGTCTGACAAGTAT+CGG + chr1_3:53909098-53909117 Msa0125440:intron 45.0%
TCGTAGGTCCTAGATCACTT+TGG + chr1_3:53909235-53909254 Msa0125440:intron 45.0%
CGTAGGTCCTAGATCACTTT+GGG + chr1_3:53909236-53909255 Msa0125440:intron 45.0%
! GTCCTAGATCACTTTGGGAA+TGG + chr1_3:53909241-53909260 Msa0125440:intron 45.0%
!! TGTGTCGTTTACGGCAAAGA+TGG + chr1_3:53909536-53909555 Msa0125440:five_prime_UTR 45.0%
CTTTGTATGCGGCAACTGAT+GGG - chr1_3:53910069-53910088 None:intergenic 45.0%
AATGTGAGATCTCTCCGGTT+AGG - chr1_3:53910224-53910243 None:intergenic 45.0%
!!! AGGTTGGTGGCATTTTGCAA+GGG - chr1_3:53910373-53910392 None:intergenic 45.0%
GTAAGACTGAACTTTCAGGC+TGG + chr1_3:53910419-53910438 Msa0125440:intron 45.0%
!! TGGAAAGTGTTGTACCCTTC+AGG + chr1_3:53910466-53910485 Msa0125440:five_prime_UTR 45.0%
! AGGTACCATGTGTTTAGGGT+TGG - chr1_3:53910492-53910511 None:intergenic 45.0%
! GAGGTGTTACAGCTTATTGG+AGG + chr1_3:53910827-53910846 Msa0125440:intron 45.0%
TACAGCTTATTGGAGGAAGG+AGG + chr1_3:53910834-53910853 Msa0125440:intron 45.0%
! CTTTTTCCCAGTTCCCTCAA+AGG - chr1_3:53910870-53910889 None:intergenic 45.0%
TGTTTGTCAGGTCATGACAC+AGG + chr1_3:53911292-53911311 Msa0125440:intron 45.0%
GTCATGACACAGGCAGATTT+AGG + chr1_3:53911302-53911321 Msa0125440:exon 45.0%
!! CCTGCTCTTCAATTTTGGGT+TGG - chr1_3:53911520-53911539 None:intergenic 45.0%
CCAACCCAAAATTGAAGAGC+AGG + chr1_3:53911517-53911536 Msa0125440:CDS 45.0%
! TCTCATGTGTCTTTAGGGGT+TGG + chr1_3:53911605-53911624 Msa0125440:intron 45.0%
ATACTCTCACACAGGCTAGA+AGG + chr1_3:53911698-53911717 Msa0125440:CDS 45.0%
CTTGAGATTGGATGTGGATG+GGG + chr1_3:53912194-53912213 Msa0125440:CDS 45.0%
!! AGTTAAAGATGCTGGCCTTC+AGG + chr1_3:53912307-53912326 Msa0125440:CDS 45.0%
ACTCATCATAACGCTCATCC+GGG - chr1_3:53912969-53912988 None:intergenic 45.0%
TGATCCTACTTAGAGAGGGT+AGG - chr1_3:53913041-53913060 None:intergenic 45.0%
GTCGAGCACGTTGAAAACTT+CGG + chr1_3:53913247-53913266 Msa0125440:CDS 45.0%
!!! GGTTTTAAGTCACGCACACT+TGG + chr1_3:53913500-53913519 Msa0125440:CDS 45.0%
ACGCACACTTGGGAATTATC+AGG + chr1_3:53913511-53913530 Msa0125440:CDS 45.0%
TGTTTCATGTGGCATGTAGG+TGG + chr1_3:53913605-53913624 Msa0125440:intron 45.0%
TGAATGCAGTAACGTTCCCA+GGG - chr1_3:53913641-53913660 None:intergenic 45.0%
! GAGGAGCTGAATTGTCCTTT+TGG + chr1_3:53913834-53913853 Msa0125440:three_prime_UTR 45.0%
!! GCTGAATTGTCCTTTTGGAG+TGG + chr1_3:53913839-53913858 Msa0125440:three_prime_UTR 45.0%
!!! TATAAAATAATTTCTTATTT+TGG - chr1_3:53905790-53905809 None:intergenic 5.0%
!! TTAAAAAAAAAAAAATTAAC+TGG - chr1_3:53906377-53906396 None:intergenic 5.0%
!! ATAATAAAATAAAATTAGTT+GGG + chr1_3:53907435-53907454 Msa0125440:intron 5.0%
!! AGAGTTGCAGTAGTTGGTGG+TGG + chr1_3:53905154-53905173 Msa0125440:five_prime_UTR 50.0%
!! GAGTTGCAGTAGTTGGTGGT+GGG + chr1_3:53905155-53905174 Msa0125440:five_prime_UTR 50.0%
!! GTAGTTGGTGGTGGGATTAG+TGG + chr1_3:53905163-53905182 Msa0125440:five_prime_UTR 50.0%
!! TGGTGGTGGGATTAGTGGTT+TGG + chr1_3:53905168-53905187 Msa0125440:five_prime_UTR 50.0%
CATGAAGGAACTGTCATGGC+AGG - chr1_3:53906995-53907014 None:intergenic 50.0%
TGTGAATGGGGCAGCAGAAA+CGG + chr1_3:53907845-53907864 Msa0125440:five_prime_UTR 50.0%
TCTCTTCTGTGCGAACAAGC+CGG - chr1_3:53907876-53907895 None:intergenic 50.0%
GGACATACACTCGAACGTAG+CGG + chr1_3:53908167-53908186 Msa0125440:intron 50.0%
TGGGGCAATTCCTCAAGACA+AGG + chr1_3:53908610-53908629 Msa0125440:five_prime_UTR 50.0%
GGGGCAATTCCTCAAGACAA+GGG + chr1_3:53908611-53908630 Msa0125440:five_prime_UTR 50.0%
GGGCAATTCCTCAAGACAAG+GGG + chr1_3:53908612-53908631 Msa0125440:five_prime_UTR 50.0%
CTGAGTAACCCCTTGTCTTG+AGG - chr1_3:53908623-53908642 None:intergenic 50.0%
CACCACCTACTTCAGGTACT+AGG + chr1_3:53908854-53908873 Msa0125440:intron 50.0%
GTCCTAGTACCTGAAGTAGG+TGG - chr1_3:53908859-53908878 None:intergenic 50.0%
CGCAATGGCTAACTGTCAGA+TGG + chr1_3:53908981-53909000 Msa0125440:five_prime_UTR 50.0%
CACCGATACTTGTCAGACAC+CGG - chr1_3:53909103-53909122 None:intergenic 50.0%
GCTTTGTATGCGGCAACTGA+TGG - chr1_3:53910070-53910089 None:intergenic 50.0%
!!! TGGTTTTCTGGGGCATACCA+AGG + chr1_3:53910130-53910149 Msa0125440:five_prime_UTR 50.0%
!!! CAGGTTGGTGGCATTTTGCA+AGG - chr1_3:53910374-53910393 None:intergenic 50.0%
!! GTGTTTAGGGTTGGCCTGAA+GGG - chr1_3:53910483-53910502 None:intergenic 50.0%
!! TGTGTTTAGGGTTGGCCTGA+AGG - chr1_3:53910484-53910503 None:intergenic 50.0%
TCAGGCCAACCCTAAACACA+TGG + chr1_3:53910484-53910503 Msa0125440:five_prime_UTR 50.0%
GCCCCAAGTTCTTTCCAAGA+AGG - chr1_3:53910512-53910531 None:intergenic 50.0%
! CATGTGTCTTTAGGGGTTGG+TGG + chr1_3:53911608-53911627 Msa0125440:intron 50.0%
GTTGCCTACCCTCTCTAAGT+AGG + chr1_3:53913034-53913053 Msa0125440:CDS 50.0%
CTGAATGCAGTAACGTTCCC+AGG - chr1_3:53913642-53913661 None:intergenic 50.0%
! GCTTAGGGCCAGCTTTTGTA+TGG - chr1_3:53913669-53913688 None:intergenic 50.0%
GGCCAAAGGTGGAGTCAATG+TGG + chr1_3:53905207-53905226 Msa0125440:five_prime_UTR 55.0%
AACTGTCATGGCAGGACCAC+TGG - chr1_3:53906987-53907006 None:intergenic 55.0%
GTCAGCCTAGACAAAGGTCG+CGG + chr1_3:53907821-53907840 Msa0125440:five_prime_UTR 55.0%
ACAAAGGTCGCGGCTGTGAA+TGG + chr1_3:53907831-53907850 Msa0125440:five_prime_UTR 55.0%
CAAAGGTCGCGGCTGTGAAT+GGG + chr1_3:53907832-53907851 Msa0125440:five_prime_UTR 55.0%
AAAGGTCGCGGCTGTGAATG+GGG + chr1_3:53907833-53907852 Msa0125440:five_prime_UTR 55.0%
GGCAGCAGAAACGGTTTGTC+CGG + chr1_3:53907854-53907873 Msa0125440:five_prime_UTR 55.0%
TGCTCCTCTCTGCAGCTCTT+TGG + chr1_3:53908953-53908972 Msa0125440:intron 55.0%
TCTGCCAAAGAGCTGCAGAG+AGG - chr1_3:53908960-53908979 None:intergenic 55.0%
AGCTCTTTGGCAGACCGCAA+TGG + chr1_3:53908966-53908985 Msa0125440:intron 55.0%
! CTCCATGCTGCTGGGTTTTG+CGG - chr1_3:53909798-53909817 None:intergenic 55.0%
TCCAAGCACTCCATGCTGCT+GGG - chr1_3:53909806-53909825 None:intergenic 55.0%
TTCCAAGCACTCCATGCTGC+TGG - chr1_3:53909807-53909826 None:intergenic 55.0%
TAAGTGGTCAACTGGCCACC+CGG + chr1_3:53910042-53910061 Msa0125440:five_prime_UTR 55.0%
TATGCGGCAACTGATGGGAC+CGG - chr1_3:53910064-53910083 None:intergenic 55.0%
GGTCACGAATGGAGCCTAAC+CGG + chr1_3:53910207-53910226 Msa0125440:intron 55.0%
GCTGGCATGATTGCAGCTCA+TGG + chr1_3:53910437-53910456 Msa0125440:five_prime_UTR 55.0%
TAGTCTGGATGCGGATGCCA+TGG - chr1_3:53913070-53913089 None:intergenic 55.0%
TGGCATCCGCATCCAGACTA+TGG + chr1_3:53913070-53913089 Msa0125440:CDS 55.0%
! TAGGTGGTTTTCTCACGCCC+TGG + chr1_3:53913621-53913640 Msa0125440:intron 55.0%
! AGGTGGTTTTCTCACGCCCT+GGG + chr1_3:53913622-53913641 Msa0125440:intron 55.0%
ATGGCAGGACCACTGGTGGA+GGG - chr1_3:53906980-53906999 None:intergenic 60.0%
TGTCATGGCAGGACCACTGG+TGG - chr1_3:53906984-53907003 None:intergenic 60.0%
CACAGCCGCGACCTTTGTCT+AGG - chr1_3:53907829-53907848 None:intergenic 60.0%
! ACACTCGAACGTAGCGGAGC+AGG + chr1_3:53908173-53908192 Msa0125440:intron 60.0%
! CACTCGAACGTAGCGGAGCA+GGG + chr1_3:53908174-53908193 Msa0125440:intron 60.0%
TGCCGCAAAACCCAGCAGCA+TGG + chr1_3:53909793-53909812 Msa0125440:five_prime_UTR 60.0%
! ACCCAGCAGCATGGAGTGCT+TGG + chr1_3:53909802-53909821 Msa0125440:five_prime_UTR 60.0%
ATGCGGCAACTGATGGGACC+GGG - chr1_3:53910063-53910082 None:intergenic 60.0%
AGAGAGGGTAGGCAACCTCC+TGG - chr1_3:53913030-53913049 None:intergenic 60.0%
CATGTGGACCCCTCCACCAG+TGG + chr1_3:53906968-53906987 Msa0125440:intron 65.0%
TGGCAGGACCACTGGTGGAG+GGG - chr1_3:53906979-53906998 None:intergenic 65.0%
CATGGCAGGACCACTGGTGG+AGG - chr1_3:53906981-53907000 None:intergenic 65.0%
! CGAACGTAGCGGAGCAGGGT+TGG + chr1_3:53908178-53908197 Msa0125440:intron 65.0%
CGGCAACTGATGGGACCGGG+TGG - chr1_3:53910060-53910079 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 53904931 53913931 53904931 ID=Msa0125440;Name=Msa0125440
chr1_3 mRNA 53904931 53913931 53904931 ID=Msa0125440-mRNA-1;Parent=Msa0125440;Name=Msa0125440-mRNA-1;_AED=0.16;_eAED=0.16;_QI=1695|1|1|1|0.95|0.95|24|245|369
chr1_3 exon 53904931 53905324 53904931 ID=Msa0125440-mRNA-1:exon:16564;Parent=Msa0125440-mRNA-1
chr1_3 exon 53907746 53907963 53907746 ID=Msa0125440-mRNA-1:exon:16565;Parent=Msa0125440-mRNA-1
chr1_3 exon 53908560 53908665 53908560 ID=Msa0125440-mRNA-1:exon:16566;Parent=Msa0125440-mRNA-1
chr1_3 exon 53908767 53908868 53908767 ID=Msa0125440-mRNA-1:exon:16567;Parent=Msa0125440-mRNA-1
chr1_3 exon 53908968 53909027 53908968 ID=Msa0125440-mRNA-1:exon:16568;Parent=Msa0125440-mRNA-1
chr1_3 exon 53909356 53909434 53909356 ID=Msa0125440-mRNA-1:exon:16569;Parent=Msa0125440-mRNA-1
chr1_3 exon 53909534 53909681 53909534 ID=Msa0125440-mRNA-1:exon:16570;Parent=Msa0125440-mRNA-1
chr1_3 exon 53909761 53909884 53909761 ID=Msa0125440-mRNA-1:exon:16571;Parent=Msa0125440-mRNA-1
chr1_3 exon 53909971 53910151 53909971 ID=Msa0125440-mRNA-1:exon:16572;Parent=Msa0125440-mRNA-1
chr1_3 exon 53910269 53910297 53910269 ID=Msa0125440-mRNA-1:exon:16573;Parent=Msa0125440-mRNA-1
chr1_3 exon 53910437 53910585 53910437 ID=Msa0125440-mRNA-1:exon:16574;Parent=Msa0125440-mRNA-1
chr1_3 exon 53910839 53910940 53910839 ID=Msa0125440-mRNA-1:exon:16575;Parent=Msa0125440-mRNA-1
chr1_3 exon 53911302 53911397 53911302 ID=Msa0125440-mRNA-1:exon:16576;Parent=Msa0125440-mRNA-1
chr1_3 exon 53911486 53911538 53911486 ID=Msa0125440-mRNA-1:exon:16577;Parent=Msa0125440-mRNA-1
chr1_3 exon 53911621 53911744 53911621 ID=Msa0125440-mRNA-1:exon:16578;Parent=Msa0125440-mRNA-1
chr1_3 exon 53911844 53911906 53911844 ID=Msa0125440-mRNA-1:exon:16579;Parent=Msa0125440-mRNA-1
chr1_3 exon 53912026 53912085 53912026 ID=Msa0125440-mRNA-1:exon:16580;Parent=Msa0125440-mRNA-1
chr1_3 exon 53912167 53912328 53912167 ID=Msa0125440-mRNA-1:exon:16581;Parent=Msa0125440-mRNA-1
chr1_3 exon 53912520 53912593 53912520 ID=Msa0125440-mRNA-1:exon:16582;Parent=Msa0125440-mRNA-1
chr1_3 exon 53912684 53912777 53912684 ID=Msa0125440-mRNA-1:exon:16583;Parent=Msa0125440-mRNA-1
chr1_3 exon 53912955 53913091 53912955 ID=Msa0125440-mRNA-1:exon:16584;Parent=Msa0125440-mRNA-1
chr1_3 exon 53913246 53913326 53913246 ID=Msa0125440-mRNA-1:exon:16585;Parent=Msa0125440-mRNA-1
chr1_3 exon 53913427 53913532 53913427 ID=Msa0125440-mRNA-1:exon:16586;Parent=Msa0125440-mRNA-1
chr1_3 exon 53913624 53913931 53913624 ID=Msa0125440-mRNA-1:exon:16587;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53904931 53905324 53904931 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53907746 53907963 53907746 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53908560 53908665 53908560 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53908767 53908868 53908767 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53908968 53909027 53908968 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53909356 53909434 53909356 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53909534 53909681 53909534 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53909761 53909884 53909761 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53909971 53910151 53909971 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53910269 53910297 53910269 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53910437 53910585 53910437 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53910839 53910940 53910839 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 five_prime_UTR 53911302 53911304 53911302 ID=Msa0125440-mRNA-1:five_prime_utr;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53911305 53911397 53911305 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53911486 53911538 53911486 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53911621 53911744 53911621 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53911844 53911906 53911844 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53912026 53912085 53912026 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53912167 53912328 53912167 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53912520 53912593 53912520 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53912684 53912777 53912684 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53912955 53913091 53912955 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53913246 53913326 53913246 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53913427 53913532 53913427 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 CDS 53913624 53913686 53913624 ID=Msa0125440-mRNA-1:cds;Parent=Msa0125440-mRNA-1
chr1_3 three_prime_UTR 53913687 53913931 53913687 ID=Msa0125440-mRNA-1:three_prime_utr;Parent=Msa0125440-mRNA-1
Gene Sequence

>Msa0125440

ATGACACAGGCAGATTTAGGCCTAGCAGATGCATACATTAATGGAGACTTTTCATTTGTTGATAAAGATGAAGGTCTCTTGAATTTTTTCTTGGTTCTCATAGCCAACAGAGATTTAAATTCATCCAACCCAAAATTGAAGAGCAGGGGTTGGTGGACACCGATTTTATTTACGGCTGGTTTGACATCTGCAAAGTTCTTCATGGACCATGTTTCAAGGAAAAATACTCTCACACAGGCTAGAAGGAACATTTCTAGACATTATGATCTGAGTAATGAACTCTTTGCACTTTTCTTGGATGAAACTATGACATACTCATGTGCAGTTTTCAAGGATGAAAATGAAGACTTGAAAGATGCACAAATGAGAAAAATATCTCTTCTGATTGAAAAAGCTAGAATAGAGAAGAAACATGAAATTCTTGAGATTGGATGTGGATGGGGAAGTTTAGCCATTGAAGTTGTTAAAAGAACTGGTTGCAAATACACCGGTATCACTTTGTCAGAGAAGCAACTCAAGCTTGCAGAAAAAAGAGTTAAAGATGCTGGCCTTCAGGACAATATCAAATTTCTTCTATGCGACTACCGACAATTGCCAAAGACATACAAATATGATAGGATTATATCTTGTGAAATGATAGAAGCTGTTGGACATGAATACATGGAAGAATTCTTTGGTTGTTGTGAATCAGTAATGGCAAATGATGGACTTCTTGTTCTTCAGTTCATATCAATCCCGGATGAGCGTTATGATGAGTATAGGCGCAGTTCTGATTTTATAAAGGAATATATTTTTCCAGGAGGTTGCCTACCCTCTCTAAGTAGGATCACATCATCCATGGCATCCGCATCCAGACTATGCGTCGAGCACGTTGAAAACTTCGGAATTCATTACTATCAAACACTAAGATTGTGGAGAAAAAATTTCATGGAAAGGCAGAGTGAAATTTTGGCTCTAGGATTTAATGAAAAATTCATCAGAACATGGGAATACTATTTTGATTATTGTGGTGCTGGTTTTAAGTCACGCACACTTGGGAATTATCAGGTGGTTTTCTCACGCCCTGGGAACGTTACTGCATTCAGTGATCCATACAAAAGCTGGCCCTAA
Protein sequence

>Msa0125440

MTQADLGLADAYINGDFSFVDKDEGLLNFFLVLIANRDLNSSNPKLKSRGWWTPILFTAGLTSAKFFMDHVSRKNTLTQARRNISRHYDLSNELFALFLDETMTYSCAVFKDENEDLKDAQMRKISLLIEKARIEKKHEILEIGCGWGSLAIEVVKRTGCKYTGITLSEKQLKLAEKRVKDAGLQDNIKFLLCDYRQLPKTYKYDRIISCEMIEAVGHEYMEEFFGCCESVMANDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRITSSMASASRLCVEHVENFGIHYYQTLRLWRKNFMERQSEILALGFNEKFIRTWEYYFDYCGAGFKSRTLGNYQVVFSRPGNVTAFSDPYKSWP*