Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790030 | XP_003591578.1 | 93.966 | 464 | 28 | 0 | 1 | 464 | 1 | 464 | 0.0 | 908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790030 | sp|D3J163|VPYL_MEDTR | 93.966 | 464 | 28 | 0 | 1 | 464 | 1 | 464 | 0.0 | 908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790030 | A0A2Z6MD82 | 82.090 | 469 | 78 | 3 | 1 | 464 | 1 | 468 | 0.0 | 802 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046800 | Msa0790030 | -0.815664 | 8.234973e-52 | -8.615850e-47 |
| Msa0047400 | Msa0790030 | -0.804914 | 1.718517e-49 | -8.615850e-47 |
| Msa0072440 | Msa0790030 | 0.814341 | 1.618655e-51 | -8.615850e-47 |
| Msa0102290 | Msa0790030 | -0.802838 | 4.639108e-49 | -8.615850e-47 |
| Msa0107830 | Msa0790030 | 0.821431 | 4.052283e-53 | -8.615850e-47 |
| Msa0117650 | Msa0790030 | 0.802878 | 4.552624e-49 | -8.615850e-47 |
| Msa0608720 | Msa0790030 | -0.802069 | 6.681804e-49 | -8.615850e-47 |
| Msa0621870 | Msa0790030 | -0.804011 | 2.650989e-49 | -8.615850e-47 |
| Msa0657260 | Msa0790030 | 0.807940 | 3.953398e-50 | -8.615850e-47 |
| Msa0695470 | Msa0790030 | -0.823468 | 1.362748e-53 | -8.615850e-47 |
| Msa0701490 | Msa0790030 | 0.821680 | 3.550216e-53 | -8.615850e-47 |
| Msa0701560 | Msa0790030 | 0.821548 | 3.809067e-53 | -8.615850e-47 |
| Msa0751510 | Msa0790030 | 0.813483 | 2.501620e-51 | -8.615850e-47 |
| Msa0772530 | Msa0790030 | -0.802753 | 4.830476e-49 | -8.615850e-47 |
| Msa0790030 | Msa0816390 | -0.814700 | 1.348150e-51 | -8.615850e-47 |
| Msa0790030 | Msa0829990 | 0.802598 | 5.200400e-49 | -8.615850e-47 |
| Msa0790030 | Msa0833980 | -0.828506 | 8.656346e-55 | -8.615850e-47 |
| Msa0790030 | Msa0874750 | 0.808199 | 3.482055e-50 | -8.615850e-47 |
| Msa0790030 | Msa0933320 | -0.826197 | 3.095185e-54 | -8.615850e-47 |
| Msa0790030 | Msa0934800 | -0.805338 | 1.400655e-49 | -8.615850e-47 |
| Msa0790030 | Msa0941420 | -0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0790030 | Msa0971100 | -0.825316 | 5.010164e-54 | -8.615850e-47 |
| Msa0790030 | Msa0978540 | -0.806959 | 6.383992e-50 | -8.615850e-47 |
| Msa0790030 | Msa0995130 | -0.810647 | 1.038791e-50 | -8.615850e-47 |
| Msa0790030 | Msa1030210 | 0.801701 | 7.951022e-49 | -8.615850e-47 |
| Msa0790030 | Msa1038170 | 0.815380 | 9.523375e-52 | -8.615850e-47 |
| Msa0790030 | Msa1054620 | -0.807432 | 5.068929e-50 | -8.615850e-47 |
| Msa0790030 | Msa1076070 | -0.808256 | 3.385762e-50 | -8.615850e-47 |
| Msa0790030 | Msa1076120 | -0.837970 | 3.796439e-57 | -8.615850e-47 |
| Msa0790030 | Msa1107220 | 0.803390 | 3.566013e-49 | -8.615850e-47 |
| Msa0790030 | Msa1126320 | -0.817088 | 3.953488e-52 | -8.615850e-47 |
| Msa0790030 | Msa1129540 | 0.810614 | 1.056131e-50 | -8.615850e-47 |
| Msa0790030 | Msa1131300 | -0.802079 | 6.651129e-49 | -8.615850e-47 |
| Msa0790030 | Msa1137750 | 0.807685 | 4.480317e-50 | -8.615850e-47 |
| Msa0790030 | Msa1146010 | 0.800476 | 1.416028e-48 | -8.615850e-47 |
| Msa0790030 | Msa1163130 | -0.809386 | 1.941193e-50 | -8.615850e-47 |
| Msa0790030 | Msa1163230 | -0.845161 | 4.825763e-59 | -8.615850e-47 |
| Msa0790030 | Msa1202110 | 0.800522 | 1.385429e-48 | -8.615850e-47 |
| Msa0790030 | Msa1203320 | -0.805076 | 1.589203e-49 | -8.615850e-47 |
| Msa0790030 | Msa1206500 | -0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0790030 | Msa1225280 | -0.825649 | 4.177102e-54 | -8.615850e-47 |
| Msa0790030 | Msa1254870 | 0.804896 | 1.733635e-49 | -8.615850e-47 |
| Msa0790030 | Msa1266750 | -0.800808 | 1.211465e-48 | -8.615850e-47 |
| Msa0790030 | Msa1269200 | 0.801595 | 8.360827e-49 | -8.615850e-47 |
| Msa0790030 | Msa1298180 | -0.811993 | 5.300889e-51 | -8.615850e-47 |
| Msa0790030 | Msa1317740 | 0.806177 | 9.334101e-50 | -8.615850e-47 |
| Msa0790030 | Msa1325270 | -0.804472 | 2.125123e-49 | -8.615850e-47 |
| Msa0790030 | Msa1328430 | 0.806088 | 9.746124e-50 | -8.615850e-47 |
| Msa0790030 | Msa1350130 | -0.802350 | 5.850210e-49 | -8.615850e-47 |
| Msa0790030 | Msa1352530 | 0.823881 | 1.090891e-53 | -8.615850e-47 |
| Msa0790030 | Msa1375570 | -0.813768 | 2.165634e-51 | -8.615850e-47 |
| Msa0790030 | Msa1388010 | -0.821008 | 5.071556e-53 | -8.615850e-47 |
| Msa0790030 | Msa1395250 | 0.808408 | 3.143539e-50 | -8.615850e-47 |
| Msa0790030 | Msa1400830 | -0.801753 | 7.760839e-49 | -8.615850e-47 |
| Msa0790030 | Msa1410360 | -0.817404 | 3.356356e-52 | -8.615850e-47 |
| Msa0790030 | Msa1416330 | 0.969508 | 3.171866e-130 | -8.615850e-47 |
| Msa0790030 | Msa1455560 | -0.808466 | 3.055267e-50 | -8.615850e-47 |
| Msa0790030 | Msa1462700 | -0.810148 | 1.331105e-50 | -8.615850e-47 |
| Msa0129770 | Msa0790030 | 0.822547 | 2.234594e-53 | -8.615850e-47 |
| Msa0143640 | Msa0790030 | 0.808160 | 3.549125e-50 | -8.615850e-47 |
| Msa0145590 | Msa0790030 | -0.808796 | 2.597674e-50 | -8.615850e-47 |
| Msa0164350 | Msa0790030 | 0.820707 | 5.949328e-53 | -8.615850e-47 |
| Msa0164530 | Msa0790030 | -0.807496 | 4.913922e-50 | -8.615850e-47 |
| Msa0191180 | Msa0790030 | -0.820646 | 6.143962e-53 | -8.615850e-47 |
| Msa0198280 | Msa0790030 | -0.811623 | 6.381863e-51 | -8.615850e-47 |
| Msa0386310 | Msa0790030 | -0.804937 | 1.699142e-49 | -8.615850e-47 |
| Msa0390200 | Msa0790030 | 0.821457 | 3.996041e-53 | -8.615850e-47 |
| Msa0415060 | Msa0790030 | -0.800282 | 1.550850e-48 | -8.615850e-47 |
| Msa0415860 | Msa0790030 | -0.814705 | 1.344946e-51 | -8.615850e-47 |
| Msa0431550 | Msa0790030 | -0.813695 | 2.247347e-51 | -8.615850e-47 |
| Msa0434830 | Msa0790030 | -0.801566 | 8.475120e-49 | -8.615850e-47 |
| Msa0436660 | Msa0790030 | -0.802323 | 5.925789e-49 | -8.615850e-47 |
| Msa0444770 | Msa0790030 | -0.807518 | 4.859792e-50 | -8.615850e-47 |
| Msa0474290 | Msa0790030 | -0.824165 | 9.355195e-54 | -8.615850e-47 |
| Msa0476560 | Msa0790030 | -0.820429 | 6.891181e-53 | -8.615850e-47 |
| Msa0267700 | Msa0790030 | 0.800348 | 1.503063e-48 | -8.615850e-47 |
| Msa0269710 | Msa0790030 | 0.807157 | 5.797579e-50 | -8.615850e-47 |
| Msa0343520 | Msa0790030 | 0.813277 | 2.777199e-51 | -8.615850e-47 |
| Msa0492330 | Msa0790030 | -0.809439 | 1.891113e-50 | -8.615850e-47 |
| Msa0497680 | Msa0790030 | 0.818036 | 2.416733e-52 | -8.615850e-47 |
| Msa0504310 | Msa0790030 | -0.818126 | 2.306799e-52 | -8.615850e-47 |
| Msa0514630 | Msa0790030 | -0.802176 | 6.352554e-49 | -8.615850e-47 |
| Msa0518720 | Msa0790030 | -0.826985 | 2.007924e-54 | -8.615850e-47 |
| Msa0522820 | Msa0790030 | -0.813493 | 2.488891e-51 | -8.615850e-47 |
| Msa0527420 | Msa0790030 | -0.823577 | 1.285524e-53 | -8.615850e-47 |
| Msa0565120 | Msa0790030 | 0.822541 | 2.241469e-53 | -8.615850e-47 |
| Msa0574420 | Msa0790030 | 0.805804 | 1.118630e-49 | -8.615850e-47 |
| Msa0580840 | Msa0790030 | 0.807477 | 4.959646e-50 | -8.615850e-47 |
| Msa0597800 | Msa0790030 | 0.805332 | 1.405248e-49 | -8.615850e-47 |
| Msa0597820 | Msa0790030 | 0.804210 | 2.410253e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790030 | MtrunA17_Chr1g0196261 | 93.966 | 464 | 28 | 0 | 1 | 464 | 1 | 464 | 0.0 | 908 |
| Msa0790030 | MtrunA17_Chr6g0461061 | 29.825 | 456 | 290 | 8 | 1 | 429 | 1 | 453 | 5.74e-54 | 189 |
| Msa0790030 | MtrunA17_Chr5g0418551 | 32.609 | 184 | 98 | 4 | 250 | 429 | 51 | 212 | 9.26e-19 | 85.5 |
| Msa0790030 | MtrunA17_Chr5g0418551 | 30.729 | 192 | 110 | 3 | 220 | 410 | 57 | 226 | 9.97e-16 | 76.6 |
| Msa0790030 | MtrunA17_Chr8g0361891 | 26.000 | 350 | 211 | 11 | 1 | 306 | 3 | 348 | 1.72e-16 | 80.9 |
| Msa0790030 | MtrunA17_Chr2g0328031 | 31.250 | 224 | 137 | 8 | 211 | 429 | 7 | 218 | 1.50e-14 | 75.5 |
| Msa0790030 | MtrunA17_Chr1g0211241 | 27.933 | 179 | 109 | 2 | 257 | 435 | 173 | 331 | 1.51e-14 | 76.3 |
| Msa0790030 | MtrunA17_Chr2g0277651 | 27.692 | 195 | 121 | 3 | 228 | 402 | 501 | 695 | 5.58e-14 | 74.3 |
| Msa0790030 | MtrunA17_Chr2g0327711 | 25.704 | 284 | 173 | 10 | 161 | 429 | 34 | 294 | 8.79e-14 | 73.6 |
| Msa0790030 | MtrunA17_Chr4g0030551 | 28.016 | 257 | 151 | 11 | 183 | 429 | 66 | 298 | 1.02e-13 | 73.2 |
| Msa0790030 | MtrunA17_Chr4g0031491 | 28.384 | 229 | 149 | 5 | 206 | 429 | 1 | 219 | 1.42e-13 | 72.4 |
| Msa0790030 | MtrunA17_Chr4g0073161 | 27.826 | 230 | 141 | 6 | 221 | 429 | 20 | 245 | 2.91e-13 | 71.6 |
| Msa0790030 | MtrunA17_Chr4g0064931 | 28.235 | 170 | 102 | 2 | 260 | 429 | 77 | 226 | 3.96e-13 | 71.6 |
| Msa0790030 | MtrunA17_Chr7g0263471 | 28.512 | 242 | 135 | 7 | 213 | 444 | 119 | 332 | 4.54e-13 | 71.2 |
| Msa0790030 | MtrunA17_Chr6g0472461 | 27.803 | 223 | 131 | 8 | 233 | 429 | 26 | 244 | 8.35e-13 | 70.5 |
| Msa0790030 | MtrunA17_Chr4g0049351 | 29.808 | 208 | 108 | 5 | 268 | 458 | 72 | 258 | 1.86e-12 | 69.3 |
| Msa0790030 | MtrunA17_Chr4g0010051 | 26.457 | 223 | 149 | 5 | 220 | 437 | 21 | 233 | 3.87e-12 | 68.2 |
| Msa0790030 | MtrunA17_Chr4g0010051 | 30.332 | 211 | 128 | 7 | 221 | 425 | 57 | 254 | 1.43e-11 | 66.2 |
| Msa0790030 | MtrunA17_Chr3g0125011 | 36.735 | 98 | 62 | 0 | 342 | 439 | 22 | 119 | 8.64e-12 | 63.2 |
| Msa0790030 | MtrunA17_Chr7g0276681 | 31.551 | 187 | 109 | 6 | 249 | 417 | 112 | 297 | 1.61e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790030 | AT2G03430.1 | 31.551 | 187 | 104 | 2 | 246 | 429 | 40 | 205 | 4.73e-17 | 80.9 |
| Msa0790030 | AT2G03430.1 | 28.571 | 231 | 114 | 5 | 180 | 410 | 40 | 219 | 2.07e-14 | 73.2 |
| Msa0790030 | AT5G60070.1 | 28.309 | 272 | 153 | 8 | 194 | 429 | 39 | 304 | 1.22e-16 | 82.8 |
| Msa0790030 | AT2G14255.1 | 30.682 | 176 | 101 | 3 | 260 | 435 | 65 | 219 | 2.24e-15 | 79.0 |
| Msa0790030 | AT2G14255.1 | 25.581 | 215 | 133 | 4 | 214 | 425 | 55 | 245 | 4.28e-14 | 74.7 |
| Msa0790030 | AT5G20350.1 | 30.000 | 170 | 99 | 2 | 260 | 429 | 72 | 221 | 1.63e-14 | 76.3 |
| Msa0790030 | AT2G28840.1 | 27.500 | 240 | 120 | 7 | 200 | 430 | 25 | 219 | 1.85e-14 | 75.9 |
| Msa0790030 | AT2G31820.1 | 29.520 | 271 | 159 | 10 | 187 | 429 | 151 | 417 | 2.99e-14 | 75.5 |
| Msa0790030 | AT2G31820.1 | 28.151 | 238 | 149 | 9 | 218 | 434 | 152 | 388 | 1.69e-12 | 70.1 |
| Msa0790030 | AT1G07710.2 | 27.734 | 256 | 153 | 9 | 183 | 429 | 62 | 294 | 3.86e-14 | 75.1 |
| Msa0790030 | AT1G07710.1 | 27.734 | 256 | 153 | 9 | 183 | 429 | 62 | 294 | 3.86e-14 | 75.1 |
| Msa0790030 | AT1G05640.1 | 31.081 | 296 | 168 | 13 | 167 | 429 | 89 | 381 | 6.31e-14 | 74.7 |
| Msa0790030 | AT5G57740.1 | 29.412 | 204 | 119 | 6 | 255 | 437 | 53 | 252 | 2.76e-13 | 72.4 |
| Msa0790030 | AT3G04710.3 | 33.149 | 181 | 95 | 6 | 257 | 435 | 283 | 439 | 6.95e-13 | 71.2 |
| Msa0790030 | AT3G04710.3 | 27.309 | 249 | 151 | 6 | 181 | 425 | 273 | 495 | 9.27e-11 | 64.7 |
| Msa0790030 | AT3G04710.2 | 33.149 | 181 | 95 | 6 | 257 | 435 | 59 | 215 | 1.09e-12 | 70.1 |
| Msa0790030 | AT3G04710.1 | 33.149 | 181 | 95 | 6 | 257 | 435 | 59 | 215 | 1.19e-12 | 70.1 |
| Msa0790030 | AT5G02620.5 | 28.163 | 245 | 133 | 8 | 194 | 421 | 24 | 242 | 1.39e-12 | 70.1 |
| Msa0790030 | AT5G02620.2 | 28.163 | 245 | 133 | 8 | 194 | 421 | 24 | 242 | 1.39e-12 | 70.1 |
| Msa0790030 | AT5G02620.4 | 26.384 | 307 | 183 | 12 | 161 | 449 | 24 | 305 | 7.07e-12 | 67.8 |
| Msa0790030 | AT5G02620.1 | 26.384 | 307 | 183 | 12 | 161 | 449 | 24 | 305 | 7.07e-12 | 67.8 |
| Msa0790030 | AT5G02620.3 | 26.384 | 307 | 183 | 12 | 161 | 449 | 24 | 305 | 7.07e-12 | 67.8 |
| Msa0790030 | AT2G26650.2 | 29.714 | 175 | 100 | 3 | 244 | 418 | 437 | 588 | 1.79e-11 | 67.0 |
| Msa0790030 | AT2G26650.1 | 28.571 | 175 | 102 | 2 | 244 | 418 | 542 | 693 | 2.32e-11 | 66.6 |
| Msa0790030 | AT5G07270.1 | 28.643 | 199 | 111 | 5 | 255 | 429 | 47 | 238 | 3.77e-11 | 65.5 |
| Msa0790030 | AT5G14230.1 | 27.778 | 306 | 186 | 12 | 153 | 429 | 303 | 602 | 4.32e-11 | 65.9 |
| Msa0790030 | AT5G12320.1 | 31.731 | 104 | 71 | 0 | 336 | 439 | 7 | 110 | 5.14e-11 | 61.2 |
| Msa0790030 | AT5G14230.2 | 27.778 | 306 | 186 | 12 | 153 | 429 | 143 | 442 | 6.71e-11 | 65.1 |
Find 89 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACAAAGGTGGTTGATTA+AGG | 0.247464 | 5_3:-693319 | None:intergenic |
| CTGAAGCTTCTTGCAGCTAA+TGG | 0.286643 | 5_3:+693710 | Msa0790030:CDS |
| CTTGTTTGGTGTACTACATT+GGG | 0.316912 | 5_3:+694102 | Msa0790030:CDS |
| ATCGTCTGTAGTGGCTTTAC+CGG | 0.321963 | 5_3:-693384 | None:intergenic |
| TGGACACTTGCAAGTTGCTT+TGG | 0.356330 | 5_3:+694351 | Msa0790030:CDS |
| TGAATCTTTCAGCGACGAAT+TGG | 0.365290 | 5_3:+693814 | Msa0790030:CDS |
| ATTCCGTTTGCAATAAGAAC+AGG | 0.367201 | 5_3:+693674 | Msa0790030:CDS |
| CACGCGCTGAAGAAGTGTTT+AGG | 0.372386 | 5_3:+694163 | Msa0790030:CDS |
| TTGCATTGTGCTGCTGAAGC+TGG | 0.388322 | 5_3:+694331 | Msa0790030:CDS |
| AGTGGTCACACGCGCTTGTT+TGG | 0.388536 | 5_3:+694088 | Msa0790030:CDS |
| TGCAGTTATAACCGTCGTTT+TGG | 0.395549 | 5_3:+693451 | Msa0790030:CDS |
| TGTTGGGTTTGTTGTTGTTA+AGG | 0.397778 | 5_3:-693222 | None:intergenic |
| GCTTGTTTGGTGTACTACAT+TGG | 0.398911 | 5_3:+694101 | Msa0790030:CDS |
| TCACTCGCTGCCACGTGAAC+TGG | 0.399901 | 5_3:-693869 | None:intergenic |
| CGACGAATTGGATGTGAATT+CGG | 0.401629 | 5_3:+693826 | Msa0790030:CDS |
| GAGTGGTGGGATTACTGATA+AGG | 0.420907 | 5_3:-693264 | None:intergenic |
| TTGTTGATTGAAAAGGTTGT+TGG | 0.422808 | 5_3:-693239 | None:intergenic |
| TTCCCTGTTCTTATTGCAAA+CGG | 0.423986 | 5_3:-693677 | None:intergenic |
| AGTGGTGGGATTACTGATAA+GGG | 0.424185 | 5_3:-693263 | None:intergenic |
| ACGCGCTGAAGAAGTGTTTA+GGG | 0.432430 | 5_3:+694164 | Msa0790030:CDS |
| TGTTGATTGAAAAGGTTGTT+GGG | 0.435252 | 5_3:-693238 | None:intergenic |
| GCTTTGGTCTTGATTGCTCA+TGG | 0.445930 | 5_3:+694367 | Msa0790030:CDS |
| CTACATTGGGCTTCATTCAA+AGG | 0.464048 | 5_3:+694232 | Msa0790030:CDS |
| TAAGGGTTTGTTGATTGAAA+AGG | 0.465974 | 5_3:-693246 | None:intergenic |
| TGAAACTCGCGGTTGAAAGC+GGG | 0.467803 | 5_3:+693576 | Msa0790030:CDS |
| ATGAAACTCGCGGTTGAAAG+CGG | 0.472267 | 5_3:+693575 | Msa0790030:CDS |
| TGGGTGGAGCCCACTACATT+GGG | 0.483776 | 5_3:+694219 | Msa0790030:CDS |
| TTGAATGAAGCCCAATGTAG+TGG | 0.486452 | 5_3:-694229 | None:intergenic |
| TACATTGGGCTTCATTCAAA+GGG | 0.487037 | 5_3:+694233 | Msa0790030:CDS |
| GGCTTTACCGGTTGGTAACA+TGG | 0.487305 | 5_3:-693372 | None:intergenic |
| CGTCGTCTCTTTAACAAACC+TGG | 0.511564 | 5_3:+693410 | Msa0790030:CDS |
| TCTGTAGTGGCTTTACCGGT+TGG | 0.516796 | 5_3:-693380 | None:intergenic |
| ATGGGTGGAGCCCACTACAT+TGG | 0.517641 | 5_3:+694218 | Msa0790030:CDS |
| CTGAAGAAGTGTTTAGGGGA+AGG | 0.519433 | 5_3:+694169 | Msa0790030:CDS |
| GTTGATAGTGTTGATGATGC+TGG | 0.521848 | 5_3:+694298 | Msa0790030:CDS |
| TTTGCACGAAGCTGCAACAA+TGG | 0.526496 | 5_3:+693763 | Msa0790030:CDS |
| TCACGGAAAACGTGGGGACC+AGG | 0.526974 | 5_3:-693428 | None:intergenic |
| GAAGAAGTGTTTAGGGGAAG+GGG | 0.527190 | 5_3:+694171 | Msa0790030:CDS |
| TGAATAGTAAAGATCAGAAT+GGG | 0.527705 | 5_3:+694200 | Msa0790030:CDS |
| CGAACGGTGATGACGTCAGC+AGG | 0.533305 | 5_3:-693344 | None:intergenic |
| CGAACCTCCATGTTACCAAC+CGG | 0.541438 | 5_3:+693365 | Msa0790030:CDS |
| CATCACCACCATGGATAGGT+TGG | 0.547063 | 5_3:+693094 | None:intergenic |
| GTGAATAGTAAAGATCAGAA+TGG | 0.548627 | 5_3:+694199 | Msa0790030:CDS |
| TGAAGAAGTGTTTAGGGGAA+GGG | 0.558826 | 5_3:+694170 | Msa0790030:CDS |
| TTCGACGCTGCATGATGAAG+TGG | 0.565036 | 5_3:-693968 | None:intergenic |
| AAATACGCAAGAGAAATAAA+CGG | 0.568319 | 5_3:+694037 | Msa0790030:CDS |
| TCTAAAATTCACATCTCCAC+CGG | 0.573420 | 5_3:-693630 | None:intergenic |
| TAACTGCATCACGGAAAACG+TGG | 0.574738 | 5_3:-693436 | None:intergenic |
| GAAGTGTTTAGGGGAAGGGG+CGG | 0.580140 | 5_3:+694174 | Msa0790030:CDS |
| TCCACCGGCGGCGATAAGAT+CGG | 0.585692 | 5_3:-693615 | None:intergenic |
| TAACCATCACCACCATGGAT+AGG | 0.591904 | 5_3:+693090 | None:intergenic |
| TTCCGTTTGCAATAAGAACA+GGG | 0.592729 | 5_3:+693675 | Msa0790030:CDS |
| ATGTTGATGAAGAGAGTGGT+GGG | 0.599092 | 5_3:-693277 | None:intergenic |
| TTTGTTGGAACATGGTGCTG+AGG | 0.600880 | 5_3:+694276 | Msa0790030:CDS |
| TTGTTTGGTGTACTACATTG+GGG | 0.602036 | 5_3:+694103 | Msa0790030:CDS |
| GTTCACGTGGCAGCGAGTGA+AGG | 0.604991 | 5_3:+693872 | Msa0790030:CDS |
| TTGGTCTTGATTGCTCATGG+TGG | 0.608489 | 5_3:+694370 | Msa0790030:CDS |
| TGAATGAAGCCCAATGTAGT+GGG | 0.611394 | 5_3:-694228 | None:intergenic |
| AACAGCGTTTGAAATAGCAT+CGG | 0.612401 | 5_3:+694063 | Msa0790030:CDS |
| GCTTCAGCAGCACAATGCAA+AGG | 0.613566 | 5_3:-694328 | None:intergenic |
| GATAACAAACTCAGCGACGG+TGG | 0.615331 | 5_3:-693480 | None:intergenic |
| AACTGCATCACGGAAAACGT+GGG | 0.618543 | 5_3:-693435 | None:intergenic |
| TGGTAACATGGAGGTTCGAA+CGG | 0.618785 | 5_3:-693360 | None:intergenic |
| TGTCCACCGTCGAGAATCAA+CGG | 0.621480 | 5_3:-693945 | None:intergenic |
| TTTGAAATAGCATCGGAGAG+TGG | 0.632198 | 5_3:+694070 | Msa0790030:CDS |
| ATGCAGAATCAACGATTCAG+TGG | 0.632543 | 5_3:+693733 | Msa0790030:CDS |
| AGGGAGAATAAAGAGTGTCA+AGG | 0.637144 | 5_3:+694252 | Msa0790030:CDS |
| CGCGCTGAAGAAGTGTTTAG+GGG | 0.639372 | 5_3:+694165 | Msa0790030:CDS |
| ATAGTAAAGATCAGAATGGG+TGG | 0.645517 | 5_3:+694203 | Msa0790030:CDS |
| ACGACGGAGATCGTCTGTAG+TGG | 0.650285 | 5_3:-693393 | None:intergenic |
| TAAGGAAACTGCAACAGACA+TGG | 0.651639 | 5_3:-693204 | None:intergenic |
| GAGGTTTGTGAGCTTGAACG+AGG | 0.657050 | 5_3:-693174 | None:intergenic |
| CAGGTTTGTTAAAGAGACGA+CGG | 0.657239 | 5_3:-693409 | None:intergenic |
| ACGTCAGCAGGTTCATACAA+AGG | 0.662183 | 5_3:-693332 | None:intergenic |
| AATGATGACACCAGTTCACG+TGG | 0.662960 | 5_3:+693859 | Msa0790030:CDS |
| CACGAATTTGATGAAACTCG+CGG | 0.663191 | 5_3:+693565 | Msa0790030:CDS |
| ATAACAAACTCAGCGACGGT+GGG | 0.664181 | 5_3:-693479 | None:intergenic |
| CAACAGACATGGTGTGCATG+AGG | 0.670248 | 5_3:-693193 | None:intergenic |
| AAAATTCACATCTCCACCGG+CGG | 0.675896 | 5_3:-693627 | None:intergenic |
| CTAACGCCGTTGATTCTCGA+CGG | 0.675903 | 5_3:+693939 | Msa0790030:CDS |
| TGAGATAACAAACTCAGCGA+CGG | 0.679630 | 5_3:-693483 | None:intergenic |
| TATGTTGATGAAGAGAGTGG+TGG | 0.683276 | 5_3:-693278 | None:intergenic |
| GTGTATGTTGATGAAGAGAG+TGG | 0.692828 | 5_3:-693281 | None:intergenic |
| ACTGCATCACGGAAAACGTG+GGG | 0.694469 | 5_3:-693434 | None:intergenic |
| CGACGGTTATAACTGCATCA+CGG | 0.697949 | 5_3:-693445 | None:intergenic |
| TCAGCAGGTTCATACAAAGG+TGG | 0.707032 | 5_3:-693329 | None:intergenic |
| ACGCCGTTGATTCTCGACGG+TGG | 0.707122 | 5_3:+693942 | Msa0790030:CDS |
| TTTACCGGTTGGTAACATGG+AGG | 0.712639 | 5_3:-693369 | None:intergenic |
| GGTGGGACCTACCAAAACGA+CGG | 0.719809 | 5_3:-693462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAACATTTTTGGTTTTTC+TGG | - | chr5_3:693154-693173 | None:intergenic | 25.0% |
| !!! | GTGAATTTTAGAGATTCAAA+CGG | + | chr5_3:693641-693660 | Msa0790030:CDS | 25.0% |
| !! | ATTGAGTTTTTCGTTTCAAT+CGG | + | chr5_3:693908-693927 | Msa0790030:CDS | 25.0% |
| ! | GTCGAAAAATCATTTAAAAG+CGG | + | chr5_3:693985-694004 | Msa0790030:CDS | 25.0% |
| ! | AAATACGCAAGAGAAATAAA+CGG | + | chr5_3:694037-694056 | Msa0790030:CDS | 25.0% |
| ! | TGAATAGTAAAGATCAGAAT+GGG | + | chr5_3:694200-694219 | Msa0790030:CDS | 25.0% |
| !!! | TGTTTTTGAAAAGAAGCAAT+TGG | - | chr5_3:694433-694452 | None:intergenic | 25.0% |
| !!! | AACAACATTTTTGGTTTTTC+TGG | - | chr5_3:693154-693173 | None:intergenic | 25.0% |
| !!! | GTGAATTTTAGAGATTCAAA+CGG | + | chr5_3:693641-693660 | Msa0790030:CDS | 25.0% |
| !! | ATTGAGTTTTTCGTTTCAAT+CGG | + | chr5_3:693908-693927 | Msa0790030:CDS | 25.0% |
| ! | GTCGAAAAATCATTTAAAAG+CGG | + | chr5_3:693985-694004 | Msa0790030:CDS | 25.0% |
| ! | AAATACGCAAGAGAAATAAA+CGG | + | chr5_3:694037-694056 | Msa0790030:CDS | 25.0% |
| ! | TGAATAGTAAAGATCAGAAT+GGG | + | chr5_3:694200-694219 | Msa0790030:CDS | 25.0% |
| !!! | TGTTTTTGAAAAGAAGCAAT+TGG | - | chr5_3:694433-694452 | None:intergenic | 25.0% |
| !!! | CATTTTTGGTTTTTCTGGAA+GGG | - | chr5_3:693149-693168 | None:intergenic | 30.0% |
| !!! | ACATTTTTGGTTTTTCTGGA+AGG | - | chr5_3:693150-693169 | None:intergenic | 30.0% |
| ! | TGTTGATTGAAAAGGTTGTT+GGG | - | chr5_3:693241-693260 | None:intergenic | 30.0% |
| ! | TTGTTGATTGAAAAGGTTGT+TGG | - | chr5_3:693242-693261 | None:intergenic | 30.0% |
| !! | TAAGGGTTTGTTGATTGAAA+AGG | - | chr5_3:693249-693268 | None:intergenic | 30.0% |
| ! | TCTTTTCACGAAAGCTATAT+CGG | + | chr5_3:693523-693542 | Msa0790030:CDS | 30.0% |
| GTGAATAGTAAAGATCAGAA+TGG | + | chr5_3:694199-694218 | Msa0790030:CDS | 30.0% | |
| !!! | CATTTTTGGTTTTTCTGGAA+GGG | - | chr5_3:693149-693168 | None:intergenic | 30.0% |
| !!! | ACATTTTTGGTTTTTCTGGA+AGG | - | chr5_3:693150-693169 | None:intergenic | 30.0% |
| ! | TGTTGATTGAAAAGGTTGTT+GGG | - | chr5_3:693241-693260 | None:intergenic | 30.0% |
| ! | TTGTTGATTGAAAAGGTTGT+TGG | - | chr5_3:693242-693261 | None:intergenic | 30.0% |
| !! | TAAGGGTTTGTTGATTGAAA+AGG | - | chr5_3:693249-693268 | None:intergenic | 30.0% |
| ! | TCTTTTCACGAAAGCTATAT+CGG | + | chr5_3:693523-693542 | Msa0790030:CDS | 30.0% |
| GTGAATAGTAAAGATCAGAA+TGG | + | chr5_3:694199-694218 | Msa0790030:CDS | 30.0% | |
| ! | TGAACGAGGAACAACATTTT+TGG | - | chr5_3:693163-693182 | None:intergenic | 35.0% |
| !! | TGTTGGGTTTGTTGTTGTTA+AGG | - | chr5_3:693225-693244 | None:intergenic | 35.0% |
| CATACAAAGGTGGTTGATTA+AGG | - | chr5_3:693322-693341 | None:intergenic | 35.0% | |
| ! | TCTAAAATTCACATCTCCAC+CGG | - | chr5_3:693633-693652 | None:intergenic | 35.0% |
| ATTCCGTTTGCAATAAGAAC+AGG | + | chr5_3:693674-693693 | Msa0790030:CDS | 35.0% | |
| TTCCGTTTGCAATAAGAACA+GGG | + | chr5_3:693675-693694 | Msa0790030:CDS | 35.0% | |
| TTCCCTGTTCTTATTGCAAA+CGG | - | chr5_3:693680-693699 | None:intergenic | 35.0% | |
| ! | TTCTCTTGCGTATTTTACGT+CGG | - | chr5_3:694032-694051 | None:intergenic | 35.0% |
| ! | AACAGCGTTTGAAATAGCAT+CGG | + | chr5_3:694063-694082 | Msa0790030:CDS | 35.0% |
| !! | CTTGTTTGGTGTACTACATT+GGG | + | chr5_3:694102-694121 | Msa0790030:CDS | 35.0% |
| !! | TTGTTTGGTGTACTACATTG+GGG | + | chr5_3:694103-694122 | Msa0790030:CDS | 35.0% |
| ATAGTAAAGATCAGAATGGG+TGG | + | chr5_3:694203-694222 | Msa0790030:CDS | 35.0% | |
| TACATTGGGCTTCATTCAAA+GGG | + | chr5_3:694233-694252 | Msa0790030:CDS | 35.0% | |
| !!! | AAAGAGTGTCAAGGTTTTGT+TGG | + | chr5_3:694261-694280 | Msa0790030:CDS | 35.0% |
| ! | TGAACGAGGAACAACATTTT+TGG | - | chr5_3:693163-693182 | None:intergenic | 35.0% |
| !! | TGTTGGGTTTGTTGTTGTTA+AGG | - | chr5_3:693225-693244 | None:intergenic | 35.0% |
| CATACAAAGGTGGTTGATTA+AGG | - | chr5_3:693322-693341 | None:intergenic | 35.0% | |
| ! | TCTAAAATTCACATCTCCAC+CGG | - | chr5_3:693633-693652 | None:intergenic | 35.0% |
| ATTCCGTTTGCAATAAGAAC+AGG | + | chr5_3:693674-693693 | Msa0790030:CDS | 35.0% | |
| TTCCGTTTGCAATAAGAACA+GGG | + | chr5_3:693675-693694 | Msa0790030:CDS | 35.0% | |
| TTCCCTGTTCTTATTGCAAA+CGG | - | chr5_3:693680-693699 | None:intergenic | 35.0% | |
| ! | TTCTCTTGCGTATTTTACGT+CGG | - | chr5_3:694032-694051 | None:intergenic | 35.0% |
| ! | AACAGCGTTTGAAATAGCAT+CGG | + | chr5_3:694063-694082 | Msa0790030:CDS | 35.0% |
| !! | CTTGTTTGGTGTACTACATT+GGG | + | chr5_3:694102-694121 | Msa0790030:CDS | 35.0% |
| !! | TTGTTTGGTGTACTACATTG+GGG | + | chr5_3:694103-694122 | Msa0790030:CDS | 35.0% |
| ATAGTAAAGATCAGAATGGG+TGG | + | chr5_3:694203-694222 | Msa0790030:CDS | 35.0% | |
| TACATTGGGCTTCATTCAAA+GGG | + | chr5_3:694233-694252 | Msa0790030:CDS | 35.0% | |
| !!! | AAAGAGTGTCAAGGTTTTGT+TGG | + | chr5_3:694261-694280 | Msa0790030:CDS | 35.0% |
| !!! | TTTGGTTTTTCTGGAAGGGA+AGG | - | chr5_3:693145-693164 | None:intergenic | 40.0% |
| TAAGGAAACTGCAACAGACA+TGG | - | chr5_3:693207-693226 | None:intergenic | 40.0% | |
| ! | AGTGGTGGGATTACTGATAA+GGG | - | chr5_3:693266-693285 | None:intergenic | 40.0% |
| ! | ATGTTGATGAAGAGAGTGGT+GGG | - | chr5_3:693280-693299 | None:intergenic | 40.0% |
| ! | TATGTTGATGAAGAGAGTGG+TGG | - | chr5_3:693281-693300 | None:intergenic | 40.0% |
| ! | GTGTATGTTGATGAAGAGAG+TGG | - | chr5_3:693284-693303 | None:intergenic | 40.0% |
| !! | CAGGTTTGTTAAAGAGACGA+CGG | - | chr5_3:693412-693431 | None:intergenic | 40.0% |
| ! | TGCAGTTATAACCGTCGTTT+TGG | + | chr5_3:693451-693470 | Msa0790030:CDS | 40.0% |
| !! | GTTATAACCGTCGTTTTGGT+AGG | + | chr5_3:693455-693474 | Msa0790030:CDS | 40.0% |
| TGAGATAACAAACTCAGCGA+CGG | - | chr5_3:693486-693505 | None:intergenic | 40.0% | |
| CACGAATTTGATGAAACTCG+CGG | + | chr5_3:693565-693584 | Msa0790030:CDS | 40.0% | |
| ATGCAGAATCAACGATTCAG+TGG | + | chr5_3:693733-693752 | Msa0790030:CDS | 40.0% | |
| TGAATCTTTCAGCGACGAAT+TGG | + | chr5_3:693814-693833 | Msa0790030:CDS | 40.0% | |
| CGACGAATTGGATGTGAATT+CGG | + | chr5_3:693826-693845 | Msa0790030:CDS | 40.0% | |
| ! | GAGTTTTTCGTTTCAATCGG+AGG | + | chr5_3:693911-693930 | Msa0790030:CDS | 40.0% |
| ! | TTTGAAATAGCATCGGAGAG+TGG | + | chr5_3:694070-694089 | Msa0790030:CDS | 40.0% |
| !! | GCTTGTTTGGTGTACTACAT+TGG | + | chr5_3:694101-694120 | Msa0790030:CDS | 40.0% |
| !! | TGAAGAAGTGTTTAGGGGAA+GGG | + | chr5_3:694170-694189 | Msa0790030:CDS | 40.0% |
| TGAATGAAGCCCAATGTAGT+GGG | - | chr5_3:694231-694250 | None:intergenic | 40.0% | |
| TTGAATGAAGCCCAATGTAG+TGG | - | chr5_3:694232-694251 | None:intergenic | 40.0% | |
| CTACATTGGGCTTCATTCAA+AGG | + | chr5_3:694232-694251 | Msa0790030:CDS | 40.0% | |
| !! | AGGGAGAATAAAGAGTGTCA+AGG | + | chr5_3:694252-694271 | Msa0790030:CDS | 40.0% |
| !!! | GTCAAGGTTTTGTTGGAACA+TGG | + | chr5_3:694268-694287 | Msa0790030:CDS | 40.0% |
| !! | GTTGATAGTGTTGATGATGC+TGG | + | chr5_3:694298-694317 | Msa0790030:CDS | 40.0% |
| !!! | TTTGGTTTTTCTGGAAGGGA+AGG | - | chr5_3:693145-693164 | None:intergenic | 40.0% |
| TAAGGAAACTGCAACAGACA+TGG | - | chr5_3:693207-693226 | None:intergenic | 40.0% | |
| ! | AGTGGTGGGATTACTGATAA+GGG | - | chr5_3:693266-693285 | None:intergenic | 40.0% |
| ! | ATGTTGATGAAGAGAGTGGT+GGG | - | chr5_3:693280-693299 | None:intergenic | 40.0% |
| ! | TATGTTGATGAAGAGAGTGG+TGG | - | chr5_3:693281-693300 | None:intergenic | 40.0% |
| ! | GTGTATGTTGATGAAGAGAG+TGG | - | chr5_3:693284-693303 | None:intergenic | 40.0% |
| !! | CAGGTTTGTTAAAGAGACGA+CGG | - | chr5_3:693412-693431 | None:intergenic | 40.0% |
| ! | TGCAGTTATAACCGTCGTTT+TGG | + | chr5_3:693451-693470 | Msa0790030:CDS | 40.0% |
| !! | GTTATAACCGTCGTTTTGGT+AGG | + | chr5_3:693455-693474 | Msa0790030:CDS | 40.0% |
| TGAGATAACAAACTCAGCGA+CGG | - | chr5_3:693486-693505 | None:intergenic | 40.0% | |
| CACGAATTTGATGAAACTCG+CGG | + | chr5_3:693565-693584 | Msa0790030:CDS | 40.0% | |
| ATGCAGAATCAACGATTCAG+TGG | + | chr5_3:693733-693752 | Msa0790030:CDS | 40.0% | |
| TGAATCTTTCAGCGACGAAT+TGG | + | chr5_3:693814-693833 | Msa0790030:CDS | 40.0% | |
| CGACGAATTGGATGTGAATT+CGG | + | chr5_3:693826-693845 | Msa0790030:CDS | 40.0% | |
| ! | GAGTTTTTCGTTTCAATCGG+AGG | + | chr5_3:693911-693930 | Msa0790030:CDS | 40.0% |
| ! | TTTGAAATAGCATCGGAGAG+TGG | + | chr5_3:694070-694089 | Msa0790030:CDS | 40.0% |
| !! | GCTTGTTTGGTGTACTACAT+TGG | + | chr5_3:694101-694120 | Msa0790030:CDS | 40.0% |
| !! | TGAAGAAGTGTTTAGGGGAA+GGG | + | chr5_3:694170-694189 | Msa0790030:CDS | 40.0% |
| TGAATGAAGCCCAATGTAGT+GGG | - | chr5_3:694231-694250 | None:intergenic | 40.0% | |
| TTGAATGAAGCCCAATGTAG+TGG | - | chr5_3:694232-694251 | None:intergenic | 40.0% | |
| CTACATTGGGCTTCATTCAA+AGG | + | chr5_3:694232-694251 | Msa0790030:CDS | 40.0% | |
| !! | AGGGAGAATAAAGAGTGTCA+AGG | + | chr5_3:694252-694271 | Msa0790030:CDS | 40.0% |
| !!! | GTCAAGGTTTTGTTGGAACA+TGG | + | chr5_3:694268-694287 | Msa0790030:CDS | 40.0% |
| !! | GTTGATAGTGTTGATGATGC+TGG | + | chr5_3:694298-694317 | Msa0790030:CDS | 40.0% |
| ! | GAGTGGTGGGATTACTGATA+AGG | - | chr5_3:693267-693286 | None:intergenic | 45.0% |
| TCAGCAGGTTCATACAAAGG+TGG | - | chr5_3:693332-693351 | None:intergenic | 45.0% | |
| ACGTCAGCAGGTTCATACAA+AGG | - | chr5_3:693335-693354 | None:intergenic | 45.0% | |
| TGGTAACATGGAGGTTCGAA+CGG | - | chr5_3:693363-693382 | None:intergenic | 45.0% | |
| !! | TTTACCGGTTGGTAACATGG+AGG | - | chr5_3:693372-693391 | None:intergenic | 45.0% |
| ! | ATCGTCTGTAGTGGCTTTAC+CGG | - | chr5_3:693387-693406 | None:intergenic | 45.0% |
| CGTCGTCTCTTTAACAAACC+TGG | + | chr5_3:693410-693429 | Msa0790030:CDS | 45.0% | |
| AACTGCATCACGGAAAACGT+GGG | - | chr5_3:693438-693457 | None:intergenic | 45.0% | |
| TAACTGCATCACGGAAAACG+TGG | - | chr5_3:693439-693458 | None:intergenic | 45.0% | |
| CGACGGTTATAACTGCATCA+CGG | - | chr5_3:693448-693467 | None:intergenic | 45.0% | |
| ATAACAAACTCAGCGACGGT+GGG | - | chr5_3:693482-693501 | None:intergenic | 45.0% | |
| ATGAAACTCGCGGTTGAAAG+CGG | + | chr5_3:693575-693594 | Msa0790030:CDS | 45.0% | |
| AAAATTCACATCTCCACCGG+CGG | - | chr5_3:693630-693649 | None:intergenic | 45.0% | |
| CTGAAGCTTCTTGCAGCTAA+TGG | + | chr5_3:693710-693729 | Msa0790030:CDS | 45.0% | |
| TTTGCACGAAGCTGCAACAA+TGG | + | chr5_3:693763-693782 | Msa0790030:CDS | 45.0% | |
| AATGATGACACCAGTTCACG+TGG | + | chr5_3:693859-693878 | Msa0790030:CDS | 45.0% | |
| !! | ACGCGCTGAAGAAGTGTTTA+GGG | + | chr5_3:694164-694183 | Msa0790030:CDS | 45.0% |
| !! | CTGAAGAAGTGTTTAGGGGA+AGG | + | chr5_3:694169-694188 | Msa0790030:CDS | 45.0% |
| !! | GAAGAAGTGTTTAGGGGAAG+GGG | + | chr5_3:694171-694190 | Msa0790030:CDS | 45.0% |
| ! | TTTGTTGGAACATGGTGCTG+AGG | + | chr5_3:694276-694295 | Msa0790030:CDS | 45.0% |
| TGGACACTTGCAAGTTGCTT+TGG | + | chr5_3:694351-694370 | Msa0790030:CDS | 45.0% | |
| !! | GCTTTGGTCTTGATTGCTCA+TGG | + | chr5_3:694367-694386 | Msa0790030:CDS | 45.0% |
| !! | TTGGTCTTGATTGCTCATGG+TGG | + | chr5_3:694370-694389 | Msa0790030:CDS | 45.0% |
| ! | GAGTGGTGGGATTACTGATA+AGG | - | chr5_3:693267-693286 | None:intergenic | 45.0% |
| TCAGCAGGTTCATACAAAGG+TGG | - | chr5_3:693332-693351 | None:intergenic | 45.0% | |
| ACGTCAGCAGGTTCATACAA+AGG | - | chr5_3:693335-693354 | None:intergenic | 45.0% | |
| TGGTAACATGGAGGTTCGAA+CGG | - | chr5_3:693363-693382 | None:intergenic | 45.0% | |
| !! | TTTACCGGTTGGTAACATGG+AGG | - | chr5_3:693372-693391 | None:intergenic | 45.0% |
| ! | ATCGTCTGTAGTGGCTTTAC+CGG | - | chr5_3:693387-693406 | None:intergenic | 45.0% |
| CGTCGTCTCTTTAACAAACC+TGG | + | chr5_3:693410-693429 | Msa0790030:CDS | 45.0% | |
| AACTGCATCACGGAAAACGT+GGG | - | chr5_3:693438-693457 | None:intergenic | 45.0% | |
| TAACTGCATCACGGAAAACG+TGG | - | chr5_3:693439-693458 | None:intergenic | 45.0% | |
| CGACGGTTATAACTGCATCA+CGG | - | chr5_3:693448-693467 | None:intergenic | 45.0% | |
| ATAACAAACTCAGCGACGGT+GGG | - | chr5_3:693482-693501 | None:intergenic | 45.0% | |
| ATGAAACTCGCGGTTGAAAG+CGG | + | chr5_3:693575-693594 | Msa0790030:CDS | 45.0% | |
| AAAATTCACATCTCCACCGG+CGG | - | chr5_3:693630-693649 | None:intergenic | 45.0% | |
| CTGAAGCTTCTTGCAGCTAA+TGG | + | chr5_3:693710-693729 | Msa0790030:CDS | 45.0% | |
| TTTGCACGAAGCTGCAACAA+TGG | + | chr5_3:693763-693782 | Msa0790030:CDS | 45.0% | |
| AATGATGACACCAGTTCACG+TGG | + | chr5_3:693859-693878 | Msa0790030:CDS | 45.0% | |
| !! | ACGCGCTGAAGAAGTGTTTA+GGG | + | chr5_3:694164-694183 | Msa0790030:CDS | 45.0% |
| !! | CTGAAGAAGTGTTTAGGGGA+AGG | + | chr5_3:694169-694188 | Msa0790030:CDS | 45.0% |
| !! | GAAGAAGTGTTTAGGGGAAG+GGG | + | chr5_3:694171-694190 | Msa0790030:CDS | 45.0% |
| ! | TTTGTTGGAACATGGTGCTG+AGG | + | chr5_3:694276-694295 | Msa0790030:CDS | 45.0% |
| TGGACACTTGCAAGTTGCTT+TGG | + | chr5_3:694351-694370 | Msa0790030:CDS | 45.0% | |
| !! | GCTTTGGTCTTGATTGCTCA+TGG | + | chr5_3:694367-694386 | Msa0790030:CDS | 45.0% |
| !! | TTGGTCTTGATTGCTCATGG+TGG | + | chr5_3:694370-694389 | Msa0790030:CDS | 45.0% |
| GAGGTTTGTGAGCTTGAACG+AGG | - | chr5_3:693177-693196 | None:intergenic | 50.0% | |
| CAACAGACATGGTGTGCATG+AGG | - | chr5_3:693196-693215 | None:intergenic | 50.0% | |
| CGAACCTCCATGTTACCAAC+CGG | + | chr5_3:693365-693384 | Msa0790030:CDS | 50.0% | |
| !! | GGCTTTACCGGTTGGTAACA+TGG | - | chr5_3:693375-693394 | None:intergenic | 50.0% |
| ! | TCTGTAGTGGCTTTACCGGT+TGG | - | chr5_3:693383-693402 | None:intergenic | 50.0% |
| ACTGCATCACGGAAAACGTG+GGG | - | chr5_3:693437-693456 | None:intergenic | 50.0% | |
| GATAACAAACTCAGCGACGG+TGG | - | chr5_3:693483-693502 | None:intergenic | 50.0% | |
| TGAAACTCGCGGTTGAAAGC+GGG | + | chr5_3:693576-693595 | Msa0790030:CDS | 50.0% | |
| !! | CTAACGCCGTTGATTCTCGA+CGG | + | chr5_3:693939-693958 | Msa0790030:CDS | 50.0% |
| TGTCCACCGTCGAGAATCAA+CGG | - | chr5_3:693948-693967 | None:intergenic | 50.0% | |
| TTCGACGCTGCATGATGAAG+TGG | - | chr5_3:693971-693990 | None:intergenic | 50.0% | |
| !! | CACGCGCTGAAGAAGTGTTT+AGG | + | chr5_3:694163-694182 | Msa0790030:CDS | 50.0% |
| !! | CGCGCTGAAGAAGTGTTTAG+GGG | + | chr5_3:694165-694184 | Msa0790030:CDS | 50.0% |
| GCTTCAGCAGCACAATGCAA+AGG | - | chr5_3:694331-694350 | None:intergenic | 50.0% | |
| ! | TTGCATTGTGCTGCTGAAGC+TGG | + | chr5_3:694331-694350 | Msa0790030:CDS | 50.0% |
| GAGGTTTGTGAGCTTGAACG+AGG | - | chr5_3:693177-693196 | None:intergenic | 50.0% | |
| CAACAGACATGGTGTGCATG+AGG | - | chr5_3:693196-693215 | None:intergenic | 50.0% | |
| CGAACCTCCATGTTACCAAC+CGG | + | chr5_3:693365-693384 | Msa0790030:CDS | 50.0% | |
| !! | GGCTTTACCGGTTGGTAACA+TGG | - | chr5_3:693375-693394 | None:intergenic | 50.0% |
| ! | TCTGTAGTGGCTTTACCGGT+TGG | - | chr5_3:693383-693402 | None:intergenic | 50.0% |
| ACTGCATCACGGAAAACGTG+GGG | - | chr5_3:693437-693456 | None:intergenic | 50.0% | |
| GATAACAAACTCAGCGACGG+TGG | - | chr5_3:693483-693502 | None:intergenic | 50.0% | |
| TGAAACTCGCGGTTGAAAGC+GGG | + | chr5_3:693576-693595 | Msa0790030:CDS | 50.0% | |
| !! | CTAACGCCGTTGATTCTCGA+CGG | + | chr5_3:693939-693958 | Msa0790030:CDS | 50.0% |
| TGTCCACCGTCGAGAATCAA+CGG | - | chr5_3:693948-693967 | None:intergenic | 50.0% | |
| TTCGACGCTGCATGATGAAG+TGG | - | chr5_3:693971-693990 | None:intergenic | 50.0% | |
| !! | CACGCGCTGAAGAAGTGTTT+AGG | + | chr5_3:694163-694182 | Msa0790030:CDS | 50.0% |
| !! | CGCGCTGAAGAAGTGTTTAG+GGG | + | chr5_3:694165-694184 | Msa0790030:CDS | 50.0% |
| GCTTCAGCAGCACAATGCAA+AGG | - | chr5_3:694331-694350 | None:intergenic | 50.0% | |
| ! | TTGCATTGTGCTGCTGAAGC+TGG | + | chr5_3:694331-694350 | Msa0790030:CDS | 50.0% |
| ACGACGGAGATCGTCTGTAG+TGG | - | chr5_3:693396-693415 | None:intergenic | 55.0% | |
| GGTGGGACCTACCAAAACGA+CGG | - | chr5_3:693465-693484 | None:intergenic | 55.0% | |
| AGTGGTCACACGCGCTTGTT+TGG | + | chr5_3:694088-694107 | Msa0790030:CDS | 55.0% | |
| ! | GAAGTGTTTAGGGGAAGGGG+CGG | + | chr5_3:694174-694193 | Msa0790030:CDS | 55.0% |
| ATGGGTGGAGCCCACTACAT+TGG | + | chr5_3:694218-694237 | Msa0790030:CDS | 55.0% | |
| TGGGTGGAGCCCACTACATT+GGG | + | chr5_3:694219-694238 | Msa0790030:CDS | 55.0% | |
| ACGACGGAGATCGTCTGTAG+TGG | - | chr5_3:693396-693415 | None:intergenic | 55.0% | |
| GGTGGGACCTACCAAAACGA+CGG | - | chr5_3:693465-693484 | None:intergenic | 55.0% | |
| AGTGGTCACACGCGCTTGTT+TGG | + | chr5_3:694088-694107 | Msa0790030:CDS | 55.0% | |
| ! | GAAGTGTTTAGGGGAAGGGG+CGG | + | chr5_3:694174-694193 | Msa0790030:CDS | 55.0% |
| ATGGGTGGAGCCCACTACAT+TGG | + | chr5_3:694218-694237 | Msa0790030:CDS | 55.0% | |
| TGGGTGGAGCCCACTACATT+GGG | + | chr5_3:694219-694238 | Msa0790030:CDS | 55.0% | |
| ! | CGAACGGTGATGACGTCAGC+AGG | - | chr5_3:693347-693366 | None:intergenic | 60.0% |
| TCACGGAAAACGTGGGGACC+AGG | - | chr5_3:693431-693450 | None:intergenic | 60.0% | |
| GTCACCGATCTTATCGCCGC+CGG | + | chr5_3:693611-693630 | Msa0790030:CDS | 60.0% | |
| TCCACCGGCGGCGATAAGAT+CGG | - | chr5_3:693618-693637 | None:intergenic | 60.0% | |
| TCACTCGCTGCCACGTGAAC+TGG | - | chr5_3:693872-693891 | None:intergenic | 60.0% | |
| GTTCACGTGGCAGCGAGTGA+AGG | + | chr5_3:693872-693891 | Msa0790030:CDS | 60.0% | |
| !! | ACGCCGTTGATTCTCGACGG+TGG | + | chr5_3:693942-693961 | Msa0790030:CDS | 60.0% |
| ! | CGAACGGTGATGACGTCAGC+AGG | - | chr5_3:693347-693366 | None:intergenic | 60.0% |
| TCACGGAAAACGTGGGGACC+AGG | - | chr5_3:693431-693450 | None:intergenic | 60.0% | |
| GTCACCGATCTTATCGCCGC+CGG | + | chr5_3:693611-693630 | Msa0790030:CDS | 60.0% | |
| TCCACCGGCGGCGATAAGAT+CGG | - | chr5_3:693618-693637 | None:intergenic | 60.0% | |
| TCACTCGCTGCCACGTGAAC+TGG | - | chr5_3:693872-693891 | None:intergenic | 60.0% | |
| GTTCACGTGGCAGCGAGTGA+AGG | + | chr5_3:693872-693891 | Msa0790030:CDS | 60.0% | |
| !! | ACGCCGTTGATTCTCGACGG+TGG | + | chr5_3:693942-693961 | Msa0790030:CDS | 60.0% |
| ACCGATCTTATCGCCGCCGG+TGG | + | chr5_3:693614-693633 | Msa0790030:CDS | 65.0% | |
| ACCGATCTTATCGCCGCCGG+TGG | + | chr5_3:693614-693633 | Msa0790030:CDS | 65.0% | |
| GGGCGACGCGCTTCTACGAG+CGG | + | chr5_3:694123-694142 | Msa0790030:CDS | 70.0% | |
| GCTTCTACGAGCGGCGCGTG+TGG | + | chr5_3:694132-694151 | Msa0790030:CDS | 70.0% | |
| GGGCGACGCGCTTCTACGAG+CGG | + | chr5_3:694123-694142 | Msa0790030:CDS | 70.0% | |
| GCTTCTACGAGCGGCGCGTG+TGG | + | chr5_3:694132-694151 | Msa0790030:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 693104 | 694498 | 693104 | ID=Msa0790030;Name=Msa0790030 |
| chr5_3 | mRNA | 693104 | 694498 | 693104 | ID=Msa0790030-mRNA-1;Parent=Msa0790030;Name=Msa0790030-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|464 |
| chr5_3 | exon | 693104 | 694498 | 693104 | ID=Msa0790030-mRNA-1:exon:277;Parent=Msa0790030-mRNA-1 |
| chr5_3 | CDS | 693104 | 694498 | 693104 | ID=Msa0790030-mRNA-1:cds;Parent=Msa0790030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
