AlfalfaGEDB | Msa1038170

M. sativa cultivar zhongmu-4 / Msa1038170

KEGG: -
GO: GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0006073 GO:0006091 GO:0006112 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008466 GO:0008610 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0012505 GO:0015020 GO:0015980 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0030246 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034641 GO:0034645 GO:0035251 GO:0036094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044271 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046513 GO:0046527 GO:0048029 GO:0055114 GO:0071704 GO:0097708 GO:0098791 GO:1901564 GO:1901566 GO:1901576 GO:1990482
PFAM: PF01501.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038170	XP_013450547.1	94.643	560	18	4	1	559	1	549	0.0	1076

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038170	sp\|Q8GWB7\|GUX6_ARATH	67.358	530	155	5	31	559	25	537	0.0	677

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038170	A0A072UFK8	93.560	559	26	2	1	559	1	549	0.0	1061

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002880	Msa1038170	0.803233	3.843520e-49	-8.615850e-47
Msa0004180	Msa1038170	-0.814450	1.531359e-51	-8.615850e-47
Msa0011040	Msa1038170	0.800256	1.569645e-48	-8.615850e-47
Msa0027020	Msa1038170	-0.810598	1.064573e-50	-8.615850e-47
Msa0042210	Msa1038170	-0.816104	6.567089e-52	-8.615850e-47
Msa0048380	Msa1038170	0.809006	2.341858e-50	-8.615850e-47
Msa0051480	Msa1038170	0.807103	5.952648e-50	-8.615850e-47
Msa0070120	Msa1038170	0.802681	4.999349e-49	-8.615850e-47
Msa0075080	Msa1038170	-0.817401	3.361790e-52	-8.615850e-47
Msa0107830	Msa1038170	0.802395	5.725482e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038170	MtrunA17_Chr7g0274421	93.560	559	26	2	1	559	1	549	0.0	1061
Msa1038170	MtrunA17_Chr1g0190421	75.543	552	121	4	10	559	2	541	0.0	842
Msa1038170	MtrunA17_Chr5g0399211	32.692	260	157	8	36	283	50	303	5.97e-32	129
Msa1038170	MtrunA17_Chr4g0056181	30.916	262	163	8	34	283	35	290	2.65e-28	118
Msa1038170	MtrunA17_Chr3g0129911	34.731	167	108	1	33	198	301	467	1.15e-26	114
Msa1038170	MtrunA17_Chr1g0159301	32.961	179	115	4	23	198	299	475	8.65e-26	112
Msa1038170	MtrunA17_Chr7g0272921	35.714	168	101	2	38	198	270	437	5.50e-24	105
Msa1038170	MtrunA17_Chr1g0153481	30.636	173	119	1	26	197	290	462	9.19e-24	105
Msa1038170	MtrunA17_Chr1g0153471	29.834	181	123	2	26	202	286	466	2.18e-23	104
Msa1038170	MtrunA17_Chr1g0191821	34.337	166	104	2	38	198	267	432	4.61e-23	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038170	AT5G18480.1	67.358	530	155	5	31	559	25	537	0.0	677
Msa1038170	AT1G08990.1	39.655	174	102	3	26	197	267	439	2.30e-28	119
Msa1038170	AT1G77130.1	31.301	246	145	6	23	263	271	497	3.09e-28	119
Msa1038170	AT4G16600.1	31.801	261	161	9	34	282	56	311	8.55e-27	114
Msa1038170	AT3G18660.3	33.333	183	119	2	17	198	299	479	1.03e-26	115
Msa1038170	AT3G18660.1	33.333	183	119	2	17	198	300	480	1.04e-26	115
Msa1038170	AT3G18660.2	33.333	183	119	2	17	198	304	484	1.05e-26	115
Msa1038170	AT2G35710.1	31.034	261	162	8	34	282	60	314	2.71e-26	112
Msa1038170	AT2G35710.4	31.034	261	162	8	34	282	60	314	3.43e-26	109
Msa1038170	AT1G54940.1	36.646	161	101	1	38	197	272	432	5.24e-24	106

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Find 145 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACTAAATCTTACAC+CGG	0.615106	7_1:+74962264	Msa1038170:CDS
AAAATCAACATATGAAACAC+AGG	0.615989	7_1:-74965354	None:intergenic
AAATAAATAAATATATCCAA+CGG	0.625256	7_1:+74961487	Msa1038170:five_prime_UTR
AACCAAACAGTAGAATCAGT+TGG	0.648274	7_1:+74961552	Msa1038170:CDS
AACCATGTGTTTATTGGATC+TGG	0.436495	7_1:-74961732	None:intergenic
AACTCTTCTGGGGACAAGTT+TGG	0.282864	7_1:-74962433	None:intergenic
AAGGTTCCTACGTATTTGGG+TGG	0.637974	7_1:+74964111	Msa1038170:CDS
ACAATGTTTATTGTATTATT+TGG	0.112274	7_1:+74964252	Msa1038170:CDS
ACATTGTATAATGCAGATGT+TGG	0.559822	7_1:+74962493	Msa1038170:CDS
ACGCAGCCAGTGGTGACCGA+AGG	0.632731	7_1:+74961389	Msa1038170:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACGGAGATGAATTCTTATT+GGG	+	chr7_1:74961677-74961696	Msa1038170:CDS	30.0%
CAAAACAACCATGTGTTTAT+TGG	-	chr7_1:74961741-74961760	None:intergenic	30.0%
TCGTTAAAAAGAGTTTCAGA+TGG	-	chr7_1:74962228-74962247	None:intergenic	30.0%
ACATTGTATAATGCAGATGT+TGG	+	chr7_1:74962493-74962512	Msa1038170:CDS	30.0%
TTAAGTAATTAGAGTCACTG+AGG	+	chr7_1:74962586-74962605	Msa1038170:intron	30.0%
GATAAGATAGAATGTATGCT+AGG	+	chr7_1:74962669-74962688	Msa1038170:intron	30.0%
ATTTGCCTAATGGCTAAAAA+TGG	+	chr7_1:74962746-74962765	Msa1038170:intron	30.0%
CTAACTATTACAGACAATAC+CGG	-	chr7_1:74962829-74962848	None:intergenic	30.0%
CATTAATAACAGACCAAAAG+AGG	-	chr7_1:74963282-74963301	None:intergenic	30.0%
ATAATAAAGCACAGAATGGT+AGG	-	chr7_1:74963497-74963516	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	74961309	74965570	74961309	ID=Msa1038170;Name=Msa1038170
chr7_1	mRNA	74961309	74965570	74961309	ID=Msa1038170-mRNA-1;Parent=Msa1038170;Name=Msa1038170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=239\|0.88\|0.9\|1\|1\|1\|10\|198\|559
chr7_1	exon	74961309	74961802	74961309	ID=Msa1038170-mRNA-1:exon:18954;Parent=Msa1038170-mRNA-1
chr7_1	exon	74961882	74962002	74961882	ID=Msa1038170-mRNA-1:exon:18955;Parent=Msa1038170-mRNA-1
chr7_1	exon	74962103	74962288	74962103	ID=Msa1038170-mRNA-1:exon:18956;Parent=Msa1038170-mRNA-1
chr7_1	exon	74962374	74962537	74962374	ID=Msa1038170-mRNA-1:exon:18957;Parent=Msa1038170-mRNA-1
chr7_1	exon	74963163	74963270	74963163	ID=Msa1038170-mRNA-1:exon:18958;Parent=Msa1038170-mRNA-1
chr7_1	exon	74963405	74963542	74963405	ID=Msa1038170-mRNA-1:exon:18959;Parent=Msa1038170-mRNA-1
chr7_1	exon	74963638	74963772	74963638	ID=Msa1038170-mRNA-1:exon:18960;Parent=Msa1038170-mRNA-1
chr7_1	exon	74964066	74964372	74964066	ID=Msa1038170-mRNA-1:exon:18961;Parent=Msa1038170-mRNA-1
chr7_1	exon	74964479	74964602	74964479	ID=Msa1038170-mRNA-1:exon:18962;Parent=Msa1038170-mRNA-1
chr7_1	exon	74965231	74965570	74965231	ID=Msa1038170-mRNA-1:exon:18963;Parent=Msa1038170-mRNA-1
chr7_1	five_prime_UTR	74961309	74961547	74961309	ID=Msa1038170-mRNA-1:five_prime_utr;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74961548	74961802	74961548	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74961882	74962002	74961882	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74962103	74962288	74962103	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74962374	74962537	74962374	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74963163	74963270	74963163	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74963405	74963542	74963405	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74963638	74963772	74963638	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74964066	74964372	74964066	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74964479	74964602	74964479	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	CDS	74965231	74965372	74965231	ID=Msa1038170-mRNA-1:cds;Parent=Msa1038170-mRNA-1
chr7_1	three_prime_UTR	74965373	74965570	74965373	ID=Msa1038170-mRNA-1:three_prime_utr;Parent=Msa1038170-mRNA-1

Gene Sequence

>Msa1038170

ATGAAACCAAACAGTAGAATCAGTTGGCGTTCTTTACTATGCTTTATTATTTCTCTACTTTGTATTCTTCAATTCCAAACTTGTTTAGGAGGATCTAACAATGAAGAAGAAGCATACGTTACTCTTTTGTACGGAGATGAATTCTTATTGGGCGTTCGTGTTCTCGGTAAATCCATACGCGACACCAGATCCAATAAACACATGGTTGTTTTGGTCTCTGATGGTGTTTCCAATTTCGCCAAAAACCTCCTCCGTGCTGATGGTTGGATAGTTGAGCAGATTACTTTACTTGCCAATCCTAATCGTGTTCGTCCTAAGAGATTTTGGGGTGTTTACACTAAGTTGAAAATCTTTAACATGACCAATTACAAAAAAGTTGTTTACCTCGATGCCGATACTATTGTGGTTAAAAATATTGATGATCTTTTCAAATGTCGGAAATTCTGTGCTAATTTGAAGCATTCTGAGAGGTTGAATTCCGGAGTTATGGTGGTCGAGCCATCTGAAACTCTTTTTAACGACATGGTCAACAAAATTAAAACTACTAAATCTTACACCGGAGGAGATCAGGGATTTCTCAACTCCTATTACTCTGACTTTCCCAATGCACGTGTTTTTGATCCAAACTTGTCCCCAGAAGAGTTGAAATCCAGACCTGTTCCGGAAATGGAGAGACTATCAACATTGTATAATGCAGATGTTGGTCTTTACATGCTCGCTAACAAGTGGATGGTAGATGAGAAAGAGCTCCGTGTGATTCACTATACACTGGGACCCCTTAAGCCTTGGGACTGGTGGACATCTTGGCTTTTGAAACCTGTTGATGTCTGGCAGGATGTTAGGGAACAGCTTGGGGAGTCCCTTCCTGGAACAAGAGGCGGCCAAAATCCTAATGACTATTTTCTTGTGAAATTTCTCTTTTTCCTACCATTCTGTGCTTTATTATTCTACTGCTATAATTCACTTATGAAGAATCGAGAGTACTTTGGTTCATTTTGTAGAGGCTCCCTATGTGATCAAGTCAGGCACCTTTATTATAAGATTAGATCAAGTGGACCACTTCCTTATACAACTATCTCAACATCAGGAATCAATTCAATCCATCAGATTTGTTTCGATGGTGTCAAGCAGCTCTCGAATGGTTCTCAGTGCAAGGTTCCTACGTATTTGGGTGGTATTTCTGTCTGTTTCTGTTTAACGGCTGCTGTGGTGTCTCTTGGACTAGCTCTCTTGATTGTTCCCCGGCAAGTGATGCCGTGGACTGGTTTGCTTTTGATGTATGAATGGACATTCACAATGTTTATTGTATTATTTGGAGGTTATCTTCATTTGGTTTATCGGTGGGGAAAACATGTGGCATCACGAGCAGCATCCTCGTCACTTCCTGAGTCTTTGGATTATGATTCTGGAAAACGTCATCAAAGACAGATATCATCATGTGATACTGCTACATGGTACTATGGATTAGGGATGGCCTTGTTGGCCATTGGTGCTCCATCTTTGCCTTGTCTTTTTGGAATAACTGCCTTGTTTTTAAGGTTAGGTTTGATGGTTGTCGGGGGCATCATATTGGCATCTTTTATGACATATGCTTCTGAACATCTTGCTATCCGGTCATTCCTAAAAGGACTTGATGAGTGGGATATTGCTCCAAATAGGAGCCTGTGTTTCATATGTTGA

Protein sequence

>Msa1038170

MKPNSRISWRSLLCFIISLLCILQFQTCLGGSNNEEEAYVTLLYGDEFLLGVRVLGKSIRDTRSNKHMVVLVSDGVSNFAKNLLRADGWIVEQITLLANPNRVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVVKNIDDLFKCRKFCANLKHSERLNSGVMVVEPSETLFNDMVNKIKTTKSYTGGDQGFLNSYYSDFPNARVFDPNLSPEELKSRPVPEMERLSTLYNADVGLYMLANKWMVDEKELRVIHYTLGPLKPWDWWTSWLLKPVDVWQDVREQLGESLPGTRGGQNPNDYFLVKFLFFLPFCALLFYCYNSLMKNREYFGSFCRGSLCDQVRHLYYKIRSSGPLPYTTISTSGINSIHQICFDGVKQLSNGSQCKVPTYLGGISVCFCLTAAVVSLGLALLIVPRQVMPWTGLLLMYEWTFTMFIVLFGGYLHLVYRWGKHVASRAASSSLPESLDYDSGKRHQRQISSCDTATWYYGLGMALLAIGAPSLPCLFGITALFLRLGLMVVGGIILASFMTYASEHLAIRSFLKGLDEWDIAPNRSLCFIC*