Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790890 | AES82055.2 | 95.515 | 379 | 15 | 1 | 1 | 379 | 25 | 401 | 0.0 | 727 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790890 | sp|Q9FVS1|FBK23_ARATH | 44.789 | 355 | 182 | 6 | 24 | 374 | 3 | 347 | 3.40e-100 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790890 | G7KQW3 | 95.515 | 379 | 15 | 1 | 1 | 379 | 25 | 401 | 0.0 | 727 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0790890 | 0.810438 | 1.152723e-50 | -8.615850e-47 |
| Msa0031340 | Msa0790890 | 0.807981 | 3.876106e-50 | -8.615850e-47 |
| Msa0043980 | Msa0790890 | 0.829221 | 5.810105e-55 | -8.615850e-47 |
| Msa0084080 | Msa0790890 | 0.812689 | 3.737121e-51 | -8.615850e-47 |
| Msa0090360 | Msa0790890 | 0.800709 | 1.269303e-48 | -8.615850e-47 |
| Msa0095560 | Msa0790890 | 0.800556 | 1.363466e-48 | -8.615850e-47 |
| Msa0104550 | Msa0790890 | 0.802264 | 6.092634e-49 | -8.615850e-47 |
| Msa0104800 | Msa0790890 | 0.802218 | 6.228168e-49 | -8.615850e-47 |
| Msa0116080 | Msa0790890 | 0.810794 | 9.653643e-51 | -8.615850e-47 |
| Msa0604290 | Msa0790890 | 0.801468 | 8.877313e-49 | -8.615850e-47 |
| Msa0624060 | Msa0790890 | 0.813267 | 2.791383e-51 | -8.615850e-47 |
| Msa0676130 | Msa0790890 | 0.812657 | 3.796876e-51 | -8.615850e-47 |
| Msa0676180 | Msa0790890 | 0.814254 | 1.691825e-51 | -8.615850e-47 |
| Msa0685090 | Msa0790890 | 0.801812 | 7.546703e-49 | -8.615850e-47 |
| Msa0740510 | Msa0790890 | 0.829150 | 6.045349e-55 | -8.615850e-47 |
| Msa0763890 | Msa0790890 | 0.801020 | 1.096578e-48 | -8.615850e-47 |
| Msa0773590 | Msa0790890 | 0.807244 | 5.555551e-50 | -8.615850e-47 |
| Msa0790890 | Msa0795250 | 0.825639 | 4.200324e-54 | -8.615850e-47 |
| Msa0790890 | Msa0798430 | 0.800164 | 1.638329e-48 | -8.615850e-47 |
| Msa0790890 | Msa0805550 | 0.811848 | 5.700287e-51 | -8.615850e-47 |
| Msa0790890 | Msa0811040 | 0.804967 | 1.675448e-49 | -8.615850e-47 |
| Msa0790890 | Msa0820770 | 0.835545 | 1.576986e-56 | -8.615850e-47 |
| Msa0790890 | Msa0832340 | 0.800239 | 1.581998e-48 | -8.615850e-47 |
| Msa0790890 | Msa0832700 | 0.810447 | 1.147682e-50 | -8.615850e-47 |
| Msa0790890 | Msa0861090 | 0.830563 | 2.736333e-55 | -8.615850e-47 |
| Msa0790890 | Msa0861540 | 0.808387 | 3.174890e-50 | -8.615850e-47 |
| Msa0790890 | Msa0933310 | 0.810094 | 1.367359e-50 | -8.615850e-47 |
| Msa0790890 | Msa0969520 | 0.805973 | 1.030572e-49 | -8.615850e-47 |
| Msa0790890 | Msa0971090 | 0.803833 | 2.886112e-49 | -8.615850e-47 |
| Msa0790890 | Msa0997970 | 0.801650 | 8.146425e-49 | -8.615850e-47 |
| Msa0790890 | Msa1010350 | 0.812361 | 4.405906e-51 | -8.615850e-47 |
| Msa0790890 | Msa1023920 | 0.819370 | 1.203635e-52 | -8.615850e-47 |
| Msa0790890 | Msa1034150 | 0.806574 | 7.700493e-50 | -8.615850e-47 |
| Msa0790890 | Msa1036300 | 0.807020 | 6.198734e-50 | -8.615850e-47 |
| Msa0790890 | Msa1041670 | 0.805846 | 1.096036e-49 | -8.615850e-47 |
| Msa0790890 | Msa1043390 | 0.801708 | 7.927469e-49 | -8.615850e-47 |
| Msa0790890 | Msa1058750 | 0.812318 | 4.502690e-51 | -8.615850e-47 |
| Msa0790890 | Msa1062920 | 0.806272 | 8.917726e-50 | -8.615850e-47 |
| Msa0790890 | Msa1065610 | 0.812689 | 3.737121e-51 | -8.615850e-47 |
| Msa0790890 | Msa1080270 | 0.821476 | 3.957307e-53 | -8.615850e-47 |
| Msa0790890 | Msa1084430 | 0.975200 | 1.610964e-139 | -8.615850e-47 |
| Msa0790890 | Msa1107900 | 0.821186 | 4.615627e-53 | -8.615850e-47 |
| Msa0790890 | Msa1125400 | 0.924634 | 5.419019e-90 | -8.615850e-47 |
| Msa0790890 | Msa1125660 | 0.882377 | 1.096323e-70 | -8.615850e-47 |
| Msa0790890 | Msa1125680 | 0.923172 | 3.768826e-89 | -8.615850e-47 |
| Msa0790890 | Msa1125720 | 0.893962 | 3.853412e-75 | -8.615850e-47 |
| Msa0790890 | Msa1151720 | 0.808355 | 3.226358e-50 | -8.615850e-47 |
| Msa0790890 | Msa1151910 | 0.808161 | 3.548555e-50 | -8.615850e-47 |
| Msa0790890 | Msa1166560 | 0.805408 | 1.354609e-49 | -8.615850e-47 |
| Msa0790890 | Msa1170170 | 0.924785 | 4.427615e-90 | -8.615850e-47 |
| Msa0790890 | Msa1171400 | 0.929283 | 8.681046e-93 | -8.615850e-47 |
| Msa0790890 | Msa1206100 | 0.823527 | 1.319993e-53 | -8.615850e-47 |
| Msa0790890 | Msa1224480 | 0.800322 | 1.521829e-48 | -8.615850e-47 |
| Msa0790890 | Msa1234000 | 0.814662 | 1.374377e-51 | -8.615850e-47 |
| Msa0790890 | Msa1234070 | 0.812471 | 4.170459e-51 | -8.615850e-47 |
| Msa0790890 | Msa1250530 | 0.809940 | 1.475617e-50 | -8.615850e-47 |
| Msa0790890 | Msa1270700 | 0.800824 | 1.202035e-48 | -8.615850e-47 |
| Msa0790890 | Msa1305340 | 0.800163 | 1.639673e-48 | -8.615850e-47 |
| Msa0790890 | Msa1305660 | 0.814122 | 1.809486e-51 | -8.615850e-47 |
| Msa0790890 | Msa1305710 | 0.804641 | 1.959847e-49 | -8.615850e-47 |
| Msa0790890 | Msa1327640 | 0.813997 | 1.927814e-51 | -8.615850e-47 |
| Msa0790890 | Msa1329550 | 0.820883 | 5.421610e-53 | -8.615850e-47 |
| Msa0790890 | Msa1341950 | 0.811667 | 6.242546e-51 | -8.615850e-47 |
| Msa0790890 | Msa1367590 | 0.800875 | 1.173898e-48 | -8.615850e-47 |
| Msa0790890 | Msa1378410 | 0.808313 | 3.292872e-50 | -8.615850e-47 |
| Msa0790890 | Msa1404410 | 0.801070 | 1.070881e-48 | -8.615850e-47 |
| Msa0790890 | Msa1407600 | 0.822084 | 2.861938e-53 | -8.615850e-47 |
| Msa0790890 | Msa1451970 | 0.935171 | 1.289538e-96 | -8.615850e-47 |
| Msa0790890 | Msa1458610 | 0.813240 | 2.829295e-51 | -8.615850e-47 |
| Msa0790890 | Msa1459950 | 0.813817 | 2.112347e-51 | -8.615850e-47 |
| Msa0790890 | Msa1462290 | 0.837662 | 4.553166e-57 | -8.615850e-47 |
| Msa0123560 | Msa0790890 | 0.800551 | 1.366694e-48 | -8.615850e-47 |
| Msa0151180 | Msa0790890 | 0.824412 | 8.187142e-54 | -8.615850e-47 |
| Msa0166870 | Msa0790890 | 0.805714 | 1.168436e-49 | -8.615850e-47 |
| Msa0171290 | Msa0790890 | 0.802125 | 6.505967e-49 | -8.615850e-47 |
| Msa0178570 | Msa0790890 | 0.806288 | 8.848789e-50 | -8.615850e-47 |
| Msa0183050 | Msa0790890 | 0.807678 | 4.494260e-50 | -8.615850e-47 |
| Msa0184040 | Msa0790890 | 0.800170 | 1.634468e-48 | -8.615850e-47 |
| Msa0205510 | Msa0790890 | 0.802737 | 4.867508e-49 | -8.615850e-47 |
| Msa0206010 | Msa0790890 | 0.810294 | 1.237971e-50 | -8.615850e-47 |
| Msa0218370 | Msa0790890 | 0.802831 | 4.655331e-49 | -8.615850e-47 |
| Msa0237310 | Msa0790890 | 0.811893 | 5.575683e-51 | -8.615850e-47 |
| Msa0376350 | Msa0790890 | 0.815275 | 1.004691e-51 | -8.615850e-47 |
| Msa0379640 | Msa0790890 | 0.809415 | 1.913608e-50 | -8.615850e-47 |
| Msa0426900 | Msa0790890 | 0.808414 | 3.133830e-50 | -8.615850e-47 |
| Msa0433360 | Msa0790890 | 0.812477 | 4.157264e-51 | -8.615850e-47 |
| Msa0439970 | Msa0790890 | 0.804374 | 2.227970e-49 | -8.615850e-47 |
| Msa0249200 | Msa0790890 | 0.817116 | 3.896572e-52 | -8.615850e-47 |
| Msa0274730 | Msa0790890 | 0.811576 | 6.532483e-51 | -8.615850e-47 |
| Msa0286670 | Msa0790890 | 0.803939 | 2.743669e-49 | -8.615850e-47 |
| Msa0287410 | Msa0790890 | 0.834363 | 3.130404e-56 | -8.615850e-47 |
| Msa0315530 | Msa0790890 | 0.814525 | 1.473983e-51 | -8.615850e-47 |
| Msa0326110 | Msa0790890 | 0.806391 | 8.414705e-50 | -8.615850e-47 |
| Msa0336290 | Msa0790890 | 0.809419 | 1.910039e-50 | -8.615850e-47 |
| Msa0363790 | Msa0790890 | 0.814798 | 1.282251e-51 | -8.615850e-47 |
| Msa0516170 | Msa0790890 | 0.816215 | 6.203061e-52 | -8.615850e-47 |
| Msa0524500 | Msa0790890 | 0.803095 | 4.104763e-49 | -8.615850e-47 |
| Msa0547160 | Msa0790890 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790890 | MtrunA17_Chr7g0266441 | 95.515 | 379 | 15 | 1 | 1 | 379 | 1 | 377 | 0.0 | 725 |
| Msa0790890 | MtrunA17_Chr1g0178491 | 64.042 | 381 | 125 | 6 | 2 | 377 | 1 | 374 | 5.40e-173 | 487 |
| Msa0790890 | MtrunA17_Chr7g0266431 | 87.234 | 188 | 23 | 1 | 189 | 375 | 2 | 189 | 8.98e-120 | 344 |
| Msa0790890 | MtrunA17_Chr7g0266421 | 86.667 | 90 | 12 | 0 | 14 | 103 | 10 | 99 | 1.78e-48 | 160 |
| Msa0790890 | MtrunA17_Chr3g0143611 | 25.826 | 333 | 185 | 14 | 34 | 329 | 5 | 312 | 7.78e-14 | 72.0 |
| Msa0790890 | MtrunA17_Chr2g0294691 | 29.814 | 161 | 101 | 5 | 214 | 371 | 43 | 194 | 7.88e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790890 | AT1G57790.1 | 44.789 | 355 | 182 | 6 | 24 | 374 | 3 | 347 | 3.45e-101 | 303 |
| Msa0790890 | AT3G56470.1 | 41.880 | 351 | 179 | 7 | 32 | 376 | 27 | 358 | 3.96e-82 | 255 |
| Msa0790890 | AT4G00893.1 | 39.489 | 352 | 198 | 8 | 33 | 378 | 44 | 386 | 2.06e-79 | 249 |
| Msa0790890 | AT4G10660.1 | 41.000 | 300 | 161 | 6 | 62 | 354 | 3 | 293 | 9.08e-68 | 217 |
| Msa0790890 | AT4G12370.1 | 38.835 | 309 | 170 | 8 | 81 | 379 | 1 | 300 | 1.48e-67 | 216 |
| Msa0790890 | AT1G49360.5 | 34.527 | 391 | 213 | 15 | 8 | 372 | 61 | 434 | 6.97e-52 | 179 |
| Msa0790890 | AT1G49360.1 | 34.527 | 391 | 213 | 15 | 8 | 372 | 84 | 457 | 1.31e-51 | 179 |
| Msa0790890 | AT1G49360.3 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.76e-51 | 176 |
| Msa0790890 | AT1G49360.2 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.76e-51 | 176 |
| Msa0790890 | AT1G49360.4 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.76e-51 | 176 |
| Msa0790890 | AT3G18720.1 | 34.085 | 355 | 189 | 11 | 36 | 374 | 51 | 376 | 2.35e-50 | 173 |
| Msa0790890 | AT4G10695.2 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 3.88e-48 | 163 |
| Msa0790890 | AT4G10695.1 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 3.88e-48 | 163 |
| Msa0790890 | AT4G12382.1 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 1.37e-35 | 127 |
| Msa0790890 | AT4G12382.2 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 1.37e-35 | 127 |
| Msa0790890 | AT2G44735.1 | 40.260 | 154 | 78 | 5 | 139 | 288 | 109 | 252 | 5.73e-23 | 99.4 |
| Msa0790890 | AT4G10700.1 | 41.270 | 126 | 66 | 3 | 258 | 376 | 119 | 243 | 1.19e-20 | 90.5 |
| Msa0790890 | AT4G10700.1 | 47.312 | 93 | 43 | 2 | 62 | 154 | 3 | 89 | 4.02e-20 | 89.0 |
Find 102 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTAACTTGAAAATTAT+TGG | 0.158009 | 5_3:+1709550 | None:intergenic |
| GAACCACCAAAAGACTTTAT+TGG | 0.163822 | 5_3:-1709289 | Msa0790890:CDS |
| CAGAAGTTCTCAAAAGTATT+TGG | 0.184683 | 5_3:+1709316 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 5_3:-1709412 | Msa0790890:CDS |
| AGCTAAAATATTTATCTCTT+TGG | 0.254305 | 5_3:-1707993 | Msa0790890:three_prime_UTR |
| CCTATGTACAACCTTCAAAT+AGG | 0.266334 | 5_3:+1708054 | None:intergenic |
| TTTCCATAGAAACGGACTTT+AGG | 0.272121 | 5_3:+1709409 | None:intergenic |
| GATCTAACTTGAAAATTATT+GGG | 0.325599 | 5_3:+1709551 | None:intergenic |
| CTCTCTTTAATCCCTTTACT+AGG | 0.326943 | 5_3:-1709984 | Msa0790890:CDS |
| CAAGTTAGATCTGACACTAA+TGG | 0.329403 | 5_3:-1709539 | Msa0790890:CDS |
| ATCCAGCCAATAAAGTCTTT+TGG | 0.339525 | 5_3:+1709283 | None:intergenic |
| AGAACTCTCTGCTAAGCATT+TGG | 0.351257 | 5_3:+1709657 | None:intergenic |
| TTGACCCACTTGAACGTACT+TGG | 0.354769 | 5_3:-1709702 | Msa0790890:CDS |
| TTCCATAGAAACGGACTTTA+GGG | 0.361226 | 5_3:+1709410 | None:intergenic |
| AACATTCTTCGCATGATGTC+GGG | 0.375799 | 5_3:-1710914 | Msa0790890:exon |
| TCTTGTCTCGGTTGGATGTT+GGG | 0.383783 | 5_3:-1710263 | Msa0790890:CDS |
| CCATGTTTGAGTGAAGCATT+TGG | 0.387770 | 5_3:-1708165 | Msa0790890:three_prime_UTR |
| GCTATAAGCACGTGTTATCC+TGG | 0.393896 | 5_3:-1709844 | Msa0790890:CDS |
| ATGTTCCACAAAAGCATTGC+AGG | 0.397891 | 5_3:+1707930 | None:intergenic |
| TCTTGTGCTCCAACATCAAC+TGG | 0.401697 | 5_3:-1709910 | Msa0790890:CDS |
| GAACTCTCTGCTAAGCATTT+GGG | 0.407425 | 5_3:+1709658 | None:intergenic |
| ATGGTTGGTTATTGCTAAAC+CGG | 0.409750 | 5_3:-1710044 | Msa0790890:CDS |
| GGAATTGTTCTTGTCTCGGT+TGG | 0.421431 | 5_3:-1710271 | Msa0790890:CDS |
| GATTAGCAAAACCTATTTGA+AGG | 0.423915 | 5_3:-1708065 | Msa0790890:three_prime_UTR |
| TTCCCTTGAGTTGCCAGAGT+TGG | 0.426018 | 5_3:-1710094 | Msa0790890:CDS |
| CTGCTTGTCGTGCAGGAACT+AGG | 0.426509 | 5_3:-1708214 | Msa0790890:intron |
| AACAATTCCAAGACTTCAGC+AGG | 0.429634 | 5_3:+1710285 | None:intergenic |
| TTCTTGTCTCGGTTGGATGT+TGG | 0.436225 | 5_3:-1710264 | Msa0790890:CDS |
| TCTTGGAATTGTTCTTGTCT+CGG | 0.438217 | 5_3:-1710275 | Msa0790890:CDS |
| TATTGCTAAACCGGCAGGAC+TGG | 0.447316 | 5_3:-1710035 | Msa0790890:CDS |
| ACAATTTGGAGCTGCAAACA+TGG | 0.451046 | 5_3:-1710317 | Msa0790890:CDS |
| TTCGCATGATGTCGGGGAAA+AGG | 0.455236 | 5_3:-1710907 | Msa0790890:exon |
| CTCTGGCAACTCAAGGGAAT+AGG | 0.460842 | 5_3:+1710098 | None:intergenic |
| CGATCTCCCTGCTGAAGTCT+TGG | 0.469551 | 5_3:-1710292 | Msa0790890:CDS |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 5_3:-1709511 | Msa0790890:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.470767 | 5_3:+1710114 | None:intergenic |
| TCTCTTTAATCCCTTTACTA+GGG | 0.471216 | 5_3:-1709983 | Msa0790890:CDS |
| ATGTGGTCCTTTGATGTCAC+AGG | 0.471463 | 5_3:-1708104 | Msa0790890:three_prime_UTR |
| TGATATGTCCTGTCAAACTT+TGG | 0.477303 | 5_3:+1709946 | None:intergenic |
| AATACATAAGCCAAGGTGAT+TGG | 0.482476 | 5_3:+1710172 | None:intergenic |
| CTTGAGTTGCCAGAGTTGGA+TGG | 0.483726 | 5_3:-1710090 | Msa0790890:CDS |
| CCTGTCACGACACTGCTCAC+TGG | 0.484710 | 5_3:+1709345 | None:intergenic |
| GTGATCAGATCCCTAGTAAA+GGG | 0.491655 | 5_3:+1709973 | None:intergenic |
| CTGTCACGACACTGCTCACT+GGG | 0.495007 | 5_3:+1709346 | None:intergenic |
| CACCAAAAGACTTTATTGGC+TGG | 0.495682 | 5_3:-1709285 | Msa0790890:CDS |
| CTGAGCGACAGAGGTTGGCT+AGG | 0.495793 | 5_3:-1709730 | Msa0790890:CDS |
| TGAGCGACAGAGGTTGGCTA+GGG | 0.496901 | 5_3:-1709729 | Msa0790890:CDS |
| CCAACCTCCGCCAGTCCTGC+CGG | 0.497826 | 5_3:+1710025 | None:intergenic |
| CCAGTGAGCAGTGTCGTGAC+AGG | 0.497864 | 5_3:-1709345 | Msa0790890:CDS |
| CGTGTTTGCTATACAAAAGA+TGG | 0.502296 | 5_3:-1710063 | Msa0790890:CDS |
| CTATAAGCACGTGTTATCCT+GGG | 0.505414 | 5_3:-1709843 | Msa0790890:CDS |
| CAGGACTGGCGGAGGTTGGA+CGG | 0.511557 | 5_3:-1710021 | Msa0790890:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 5_3:-1710227 | Msa0790890:CDS |
| CCTATTTGAAGGTTGTACAT+AGG | 0.514646 | 5_3:-1708054 | Msa0790890:three_prime_UTR |
| CCGGCAGGACTGGCGGAGGT+TGG | 0.523905 | 5_3:-1710025 | Msa0790890:CDS |
| ATTGTCTGAGCGACAGAGGT+TGG | 0.524197 | 5_3:-1709735 | Msa0790890:CDS |
| CAAGACTTCAGCAGGGAGAT+CGG | 0.525981 | 5_3:+1710293 | None:intergenic |
| CATTCTAGGACTTACGTCAC+TGG | 0.528125 | 5_3:-1709457 | Msa0790890:CDS |
| TTGGTTATTGCTAAACCGGC+AGG | 0.529301 | 5_3:-1710040 | Msa0790890:CDS |
| CGTGATCAGATCCCTAGTAA+AGG | 0.536285 | 5_3:+1709972 | None:intergenic |
| TGATGTTGGAGCACAAGAGA+AGG | 0.538476 | 5_3:+1709915 | None:intergenic |
| TCACGCTGCCAAAGTTTGAC+AGG | 0.539518 | 5_3:-1709954 | Msa0790890:CDS |
| CCAAATGCTTCACTCAAACA+TGG | 0.541352 | 5_3:+1708165 | None:intergenic |
| GTCACTGGAATAATGAGAAA+CGG | 0.542182 | 5_3:-1709442 | Msa0790890:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.542919 | 5_3:-1709534 | Msa0790890:CDS |
| TCTGCTAAGCATTTGGGCGG+AGG | 0.544418 | 5_3:+1709664 | None:intergenic |
| CAACATTCTTCGCATGATGT+CGG | 0.545714 | 5_3:-1710915 | Msa0790890:exon |
| TTTGCTATACAAAAGATGGT+TGG | 0.546454 | 5_3:-1710059 | Msa0790890:CDS |
| CATCCAACTCTGGCAACTCA+AGG | 0.553068 | 5_3:+1710091 | None:intergenic |
| TTGAAATATTAAGAAATCAA+CGG | 0.556920 | 5_3:+1707838 | None:intergenic |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 5_3:+1710165 | None:intergenic |
| CATAGGAAGTTAATATGTGA+AGG | 0.564276 | 5_3:-1708037 | Msa0790890:three_prime_UTR |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 5_3:-1709527 | Msa0790890:CDS |
| TGCTAAACCGGCAGGACTGG+CGG | 0.569550 | 5_3:-1710032 | Msa0790890:CDS |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 5_3:-1710349 | Msa0790890:CDS |
| ACACGACATCCATCCAACTC+TGG | 0.576746 | 5_3:+1710081 | None:intergenic |
| ATAACACATCCAGTTGATGT+TGG | 0.578438 | 5_3:+1709901 | None:intergenic |
| CTTGTCTCGGTTGGATGTTG+GGG | 0.581584 | 5_3:-1710262 | Msa0790890:CDS |
| CTCTAAACCTGTGACATCAA+AGG | 0.581595 | 5_3:+1708097 | None:intergenic |
| AGGAATGAATATCTGTGAGT+AGG | 0.583262 | 5_3:-1708017 | Msa0790890:three_prime_UTR |
| GTGATTCTTCATGCAAAATG+TGG | 0.585218 | 5_3:-1708121 | Msa0790890:three_prime_UTR |
| ATCCAACTCTGGCAACTCAA+GGG | 0.590798 | 5_3:+1710092 | None:intergenic |
| TAAACCGGCAGGACTGGCGG+AGG | 0.593956 | 5_3:-1710029 | Msa0790890:CDS |
| ACAGTCCAAGTACGTTCAAG+TGG | 0.603382 | 5_3:+1709697 | None:intergenic |
| CAATTTGGAGCTGCAAACAT+GGG | 0.606485 | 5_3:-1710316 | Msa0790890:CDS |
| GCTCACTGGGATGATATCTA+CGG | 0.610400 | 5_3:+1709359 | None:intergenic |
| GTCGACTACACGTAAAGAAG+TGG | 0.612484 | 5_3:+1710194 | None:intergenic |
| ACATTCTTCGCATGATGTCG+GGG | 0.620719 | 5_3:-1710913 | Msa0790890:exon |
| CAGTGAGCAGTGTCGTGACA+GGG | 0.621223 | 5_3:-1709344 | Msa0790890:CDS |
| AATAGGTCTTACGCTGCACA+GGG | 0.638547 | 5_3:+1710115 | None:intergenic |
| CTCTCTGCTAAGCATTTGGG+CGG | 0.648219 | 5_3:+1709661 | None:intergenic |
| TTTGTAGTTTATATATGTTG+TGG | 0.650518 | 5_3:-1709580 | Msa0790890:CDS |
| AGTTTATATATGTTGTGGTG+AGG | 0.651124 | 5_3:-1709575 | Msa0790890:CDS |
| AGAATCACAAAGAACTCGAG+AGG | 0.661545 | 5_3:+1708136 | None:intergenic |
| GAGCGACAGAGGTTGGCTAG+GGG | 0.671202 | 5_3:-1709728 | Msa0790890:CDS |
| CAGTCCAAGTACGTTCAAGT+GGG | 0.682692 | 5_3:+1709698 | None:intergenic |
| GACCACTGTTAATTATGACG+CGG | 0.704466 | 5_3:-1709809 | Msa0790890:CDS |
| TATAAGCACGTGTTATCCTG+GGG | 0.707016 | 5_3:-1709842 | Msa0790890:CDS |
| ACAATTCCAAGACTTCAGCA+GGG | 0.713188 | 5_3:+1710286 | None:intergenic |
| GTGTAGTCGACCAATCACCT+TGG | 0.718766 | 5_3:-1710182 | Msa0790890:CDS |
| TACCGCGTCATAATTAACAG+TGG | 0.732690 | 5_3:+1709807 | None:intergenic |
| AAATTTATGATAGAGCACAA+AGG | 0.741593 | 5_3:-1709610 | Msa0790890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAAAAAAAAATTAG+CGG | - | chr5_3:1709495-1709514 | Msa0790890:CDS | 10.0% |
| !!! | TTATATCTTATTTTCAAATA+AGG | - | chr5_3:1710405-1710424 | Msa0790890:intron | 10.0% |
| !!! | ATATTTCAATTATATTTTTG+TGG | - | chr5_3:1710933-1710952 | Msa0790890:five_prime_UTR | 10.0% |
| !! | CAATAATAATAATATGTATG+GGG | + | chr5_3:1707927-1707946 | None:intergenic | 15.0% |
| !! | GCAATAATAATAATATGTAT+GGG | + | chr5_3:1707928-1707947 | None:intergenic | 15.0% |
| !! | AGCAATAATAATAATATGTA+TGG | + | chr5_3:1707929-1707948 | None:intergenic | 15.0% |
| !! | TACATATTATTATTATTGCT+AGG | - | chr5_3:1707929-1707948 | Msa0790890:three_prime_UTR | 15.0% |
| !! | ACATATTATTATTATTGCTA+GGG | - | chr5_3:1707930-1707949 | Msa0790890:three_prime_UTR | 15.0% |
| !!! | AATTTTGTTCAACAATTAAT+TGG | - | chr5_3:1707974-1707993 | Msa0790890:three_prime_UTR | 15.0% |
| !! | TTTAGATTGATAAACATATT+TGG | - | chr5_3:1708252-1708271 | Msa0790890:intron | 15.0% |
| !! | TTGAAATATTAAGAAATCAA+CGG | + | chr5_3:1710922-1710941 | None:intergenic | 15.0% |
| !!! | TCAATTTTTTGGCTTAATAA+TGG | - | chr5_3:1708008-1708027 | Msa0790890:three_prime_UTR | 20.0% |
| !! | TATGATTTCTATATCCAATT+CGG | - | chr5_3:1708067-1708086 | Msa0790890:three_prime_UTR | 20.0% |
| !! | GTTTCATCTATATTTCATAT+TGG | - | chr5_3:1708103-1708122 | Msa0790890:three_prime_UTR | 20.0% |
| !! | TTTGTAGTTTATATATGTTG+TGG | - | chr5_3:1709177-1709196 | Msa0790890:intron | 20.0% |
| !! | GATCTAACTTGAAAATTATT+GGG | + | chr5_3:1709209-1709228 | None:intergenic | 20.0% |
| !! | AGATCTAACTTGAAAATTAT+TGG | + | chr5_3:1709210-1709229 | None:intergenic | 20.0% |
| !! | AGACTACATATTATAACTAT+TGG | - | chr5_3:1709579-1709598 | Msa0790890:CDS | 20.0% |
| !!! | ATTTTTCATTTCCAAAACTA+AGG | + | chr5_3:1709922-1709941 | None:intergenic | 20.0% |
| !!! | TTAGTTTTGGAAATGAAAAA+TGG | - | chr5_3:1709921-1709940 | Msa0790890:CDS | 20.0% |
| !!! | TTATTTTCAAATAAGGACTT+GGG | - | chr5_3:1710412-1710431 | Msa0790890:intron | 20.0% |
| !! | AGCTAAAATATTTATCTCTT+TGG | - | chr5_3:1710764-1710783 | Msa0790890:intron | 20.0% |
| ! | ATAATAATATGTATGGGGTT+AGG | + | chr5_3:1707922-1707941 | None:intergenic | 25.0% |
| !!! | TTGCACTAACTTCAATTTTT+TGG | - | chr5_3:1707997-1708016 | Msa0790890:three_prime_UTR | 25.0% |
| ! | CATGAAAAATTTAACCGAAT+TGG | + | chr5_3:1708084-1708103 | None:intergenic | 25.0% |
| ! | TAGTTAATTCACAATAAAGC+TGG | + | chr5_3:1708140-1708159 | None:intergenic | 25.0% |
| !!! | CATTTTTAAGTTGATGATTG+TGG | - | chr5_3:1708161-1708180 | Msa0790890:three_prime_UTR | 25.0% |
| ! | AGATTGATAAACATATTTGG+TGG | - | chr5_3:1708255-1708274 | Msa0790890:intron | 25.0% |
| ! | GATTGATAAACATATTTGGT+GGG | - | chr5_3:1708256-1708275 | Msa0790890:intron | 25.0% |
| ! | CTTATGTATTTCCCAAAAAA+GGG | - | chr5_3:1708598-1708617 | Msa0790890:intron | 25.0% |
| !!! | CATAACAATTACCCTTTTTT+GGG | + | chr5_3:1708612-1708631 | None:intergenic | 25.0% |
| !!! | TCATAACAATTACCCTTTTT+TGG | + | chr5_3:1708613-1708632 | None:intergenic | 25.0% |
| !! | ATATTAATTTTCAGACGTGT+TGG | - | chr5_3:1708877-1708896 | Msa0790890:intron | 25.0% |
| !! | ATAAGCTTGTCTTTTCTAAT+GGG | - | chr5_3:1708992-1709011 | Msa0790890:intron | 25.0% |
| ! | AAATTTATGATAGAGCACAA+AGG | - | chr5_3:1709147-1709166 | Msa0790890:intron | 25.0% |
| !!! | TTGTGTAGAGCATTTATTTT+TGG | - | chr5_3:1709544-1709563 | Msa0790890:CDS | 25.0% |
| !! | TATTGGATACATGCTTTATT+AGG | - | chr5_3:1709596-1709615 | Msa0790890:CDS | 25.0% |
| ! | TATTAGGCTGTAAACATTTA+TGG | - | chr5_3:1709612-1709631 | Msa0790890:CDS | 25.0% |
| ! | CAATAAGACTAGGAAAATTT+AGG | + | chr5_3:1709691-1709710 | None:intergenic | 25.0% |
| ! | TGAGTTATATGCAAATCTTA+AGG | - | chr5_3:1709758-1709777 | Msa0790890:CDS | 25.0% |
| !!! | CACTAGTTTGTTGTAAAAAT+TGG | - | chr5_3:1710037-1710056 | Msa0790890:CDS | 25.0% |
| !! | TTTAACTTCAATCGAGATTA+TGG | + | chr5_3:1710104-1710123 | None:intergenic | 25.0% |
| !! | AGGGTATTCTATAAAATAAG+AGG | + | chr5_3:1710205-1710224 | None:intergenic | 25.0% |
| !!! | CTTATTTTCAAATAAGGACT+TGG | - | chr5_3:1710411-1710430 | Msa0790890:intron | 25.0% |
| ! | AGAAAAAGATATGATCAAAC+AGG | + | chr5_3:1710499-1710518 | None:intergenic | 25.0% |
| TTGTTGAACAAAATTGAGAG+TGG | + | chr5_3:1707969-1707988 | None:intergenic | 30.0% | |
| AAAAAATGAAGTTAGCTAGC+AGG | + | chr5_3:1708323-1708342 | None:intergenic | 30.0% | |
| TGAGGTAAAAAGCAACAATT+TGG | - | chr5_3:1708426-1708445 | Msa0790890:intron | 30.0% | |
| GCTTATGTATTTCCCAAAAA+AGG | - | chr5_3:1708597-1708616 | Msa0790890:intron | 30.0% | |
| ! | TTTGCTATACAAAAGATGGT+TGG | - | chr5_3:1708698-1708717 | Msa0790890:intron | 30.0% |
| TCTCTTTAATCCCTTTACTA+GGG | - | chr5_3:1708774-1708793 | Msa0790890:intron | 30.0% | |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | - | chr5_3:1708991-1709010 | Msa0790890:intron | 30.0% |
| AGTTTATATATGTTGTGGTG+AGG | - | chr5_3:1709182-1709201 | Msa0790890:intron | 30.0% | |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | - | chr5_3:1709286-1709305 | Msa0790890:CDS | 30.0% |
| !! | CAGAAGTTCTCAAAAGTATT+TGG | + | chr5_3:1709444-1709463 | None:intergenic | 30.0% |
| !! | CAAATACTTTTGAGAACTTC+TGG | - | chr5_3:1709442-1709461 | Msa0790890:CDS | 30.0% |
| TTGTAGCTAACAATAAGACT+AGG | + | chr5_3:1709701-1709720 | None:intergenic | 30.0% | |
| AAATCTTAAGGTTTCTCCAA+TGG | - | chr5_3:1709770-1709789 | Msa0790890:CDS | 30.0% | |
| ! | ATGTTCATGATCCTTAGTTT+TGG | - | chr5_3:1709908-1709927 | Msa0790890:CDS | 30.0% |
| ! | ATTTTATAGAATACCCTTGC+AGG | - | chr5_3:1710208-1710227 | Msa0790890:CDS | 30.0% |
| GATAGTTTGGAAAACATAGT+CGG | - | chr5_3:1710262-1710281 | Msa0790890:CDS | 30.0% | |
| ACTGGTATATGATTGCTAAA+TGG | - | chr5_3:1710314-1710333 | Msa0790890:CDS | 30.0% | |
| ! | ATTTTGCCTGTTTGATCAAA+TGG | - | chr5_3:1710358-1710377 | Msa0790890:CDS | 30.0% |
| GATTAGCAAAACCTATTTGA+AGG | - | chr5_3:1710692-1710711 | Msa0790890:intron | 30.0% | |
| CATAGGAAGTTAATATGTGA+AGG | - | chr5_3:1710720-1710739 | Msa0790890:intron | 30.0% | |
| GGAGAAAAATCTTGAAATTC+AGG | + | chr5_3:1710809-1710828 | None:intergenic | 30.0% | |
| ATATGTATGGGGTTAGGTTA+GGG | + | chr5_3:1707916-1707935 | None:intergenic | 35.0% | |
| AATATGTATGGGGTTAGGTT+AGG | + | chr5_3:1707917-1707936 | None:intergenic | 35.0% | |
| ATTCACAATAAAGCTGGTCA+TGG | + | chr5_3:1708134-1708153 | None:intergenic | 35.0% | |
| GTAAACAGAACAGAAACAGT+GGG | + | chr5_3:1708217-1708236 | None:intergenic | 35.0% | |
| AGTAAACAGAACAGAAACAG+TGG | + | chr5_3:1708218-1708237 | None:intergenic | 35.0% | |
| ! | GATAAACATATTTGGTGGGA+TGG | - | chr5_3:1708260-1708279 | Msa0790890:intron | 35.0% |
| TCTTGGAATTGTTCTTGTCT+CGG | - | chr5_3:1708482-1708501 | Msa0790890:intron | 35.0% | |
| AATACATAAGCCAAGGTGAT+TGG | + | chr5_3:1708588-1708607 | None:intergenic | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | + | chr5_3:1708595-1708614 | None:intergenic | 35.0% | |
| !! | CGTGTTTGCTATACAAAAGA+TGG | - | chr5_3:1708694-1708713 | Msa0790890:intron | 35.0% |
| ! | ATGGTTGGTTATTGCTAAAC+CGG | - | chr5_3:1708713-1708732 | Msa0790890:intron | 35.0% |
| CTCTCTTTAATCCCTTTACT+AGG | - | chr5_3:1708773-1708792 | Msa0790890:intron | 35.0% | |
| TGATATGTCCTGTCAAACTT+TGG | + | chr5_3:1708814-1708833 | None:intergenic | 35.0% | |
| ! | ATAACACATCCAGTTGATGT+TGG | + | chr5_3:1708859-1708878 | None:intergenic | 35.0% |
| CAAGTTAGATCTGACACTAA+TGG | - | chr5_3:1709218-1709237 | Msa0790890:intron | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | - | chr5_3:1709223-1709242 | Msa0790890:intron | 35.0% | |
| GTCACTGGAATAATGAGAAA+CGG | - | chr5_3:1709315-1709334 | Msa0790890:CDS | 35.0% | |
| ! | TTCCATAGAAACGGACTTTA+GGG | + | chr5_3:1709350-1709369 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | + | chr5_3:1709351-1709370 | None:intergenic | 35.0% |
| ! | TGCAACGTTTTCCATAGAAA+CGG | + | chr5_3:1709359-1709378 | None:intergenic | 35.0% |
| GAACCACCAAAAGACTTTAT+TGG | - | chr5_3:1709468-1709487 | Msa0790890:CDS | 35.0% | |
| ! | ATCCAGCCAATAAAGTCTTT+TGG | + | chr5_3:1709477-1709496 | None:intergenic | 35.0% |
| GTAAACATTTATGGAGCTAC+TGG | - | chr5_3:1709621-1709640 | Msa0790890:CDS | 35.0% | |
| GAATAAGATTGCATGCATCA+TGG | + | chr5_3:1709734-1709753 | None:intergenic | 35.0% | |
| ACTAATGCACATGTAACCAT+TGG | + | chr5_3:1709789-1709808 | None:intergenic | 35.0% | |
| ! | GACAGAGTACAATTTTGCTA+TGG | - | chr5_3:1709857-1709876 | Msa0790890:CDS | 35.0% |
| TGAAAAATGGTCAGAGTTAG+AGG | - | chr5_3:1709934-1709953 | Msa0790890:CDS | 35.0% | |
| ACACACATGACTTTCTATGA+TGG | + | chr5_3:1710071-1710090 | None:intergenic | 35.0% | |
| ! | CTATGTTTTCCAAACTATCG+AGG | + | chr5_3:1710261-1710280 | None:intergenic | 35.0% |
| ATCCAACCATTTGATCAAAC+AGG | + | chr5_3:1710367-1710386 | None:intergenic | 35.0% | |
| GTGATTCTTCATGCAAAATG+TGG | - | chr5_3:1710636-1710655 | Msa0790890:intron | 35.0% | |
| CCTATGTACAACCTTCAAAT+AGG | + | chr5_3:1710706-1710725 | None:intergenic | 35.0% | |
| CCTATTTGAAGGTTGTACAT+AGG | - | chr5_3:1710703-1710722 | Msa0790890:intron | 35.0% | |
| AGGAATGAATATCTGTGAGT+AGG | - | chr5_3:1710740-1710759 | Msa0790890:intron | 35.0% | |
| CAACATTCTTCGCATGATGT+CGG | - | chr5_3:1707842-1707861 | Msa0790890:three_prime_UTR | 40.0% | |
| AACATTCTTCGCATGATGTC+GGG | - | chr5_3:1707843-1707862 | Msa0790890:three_prime_UTR | 40.0% | |
| ! | ACAATTTGGAGCTGCAAACA+TGG | - | chr5_3:1708440-1708459 | Msa0790890:intron | 40.0% |
| ! | CAATTTGGAGCTGCAAACAT+GGG | - | chr5_3:1708441-1708460 | Msa0790890:intron | 40.0% |
| ACAATTCCAAGACTTCAGCA+GGG | + | chr5_3:1708474-1708493 | None:intergenic | 40.0% | |
| AACAATTCCAAGACTTCAGC+AGG | + | chr5_3:1708475-1708494 | None:intergenic | 40.0% | |
| GTGATCAGATCCCTAGTAAA+GGG | + | chr5_3:1708787-1708806 | None:intergenic | 40.0% | |
| CTATAAGCACGTGTTATCCT+GGG | - | chr5_3:1708914-1708933 | Msa0790890:intron | 40.0% | |
| TATAAGCACGTGTTATCCTG+GGG | - | chr5_3:1708915-1708934 | Msa0790890:intron | 40.0% | |
| GTTATCCTGGGGAAAAAGAA+TGG | - | chr5_3:1708926-1708945 | Msa0790890:intron | 40.0% | |
| GACCACTGTTAATTATGACG+CGG | - | chr5_3:1708948-1708967 | Msa0790890:intron | 40.0% | |
| TACCGCGTCATAATTAACAG+TGG | + | chr5_3:1708953-1708972 | None:intergenic | 40.0% | |
| ! | TTTTATTGTCTGAGCGACAG+AGG | - | chr5_3:1709018-1709037 | Msa0790890:intron | 40.0% |
| GAACTCTCTGCTAAGCATTT+GGG | + | chr5_3:1709102-1709121 | None:intergenic | 40.0% | |
| AGAACTCTCTGCTAAGCATT+TGG | + | chr5_3:1709103-1709122 | None:intergenic | 40.0% | |
| AGAGTTCTACTGCCAAAAAC+TGG | - | chr5_3:1709115-1709134 | Msa0790890:intron | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | - | chr5_3:1709230-1709249 | Msa0790890:intron | 40.0% | |
| AAAGAGGTGAGAACACTAGA+TGG | - | chr5_3:1709246-1709265 | Msa0790890:intron | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | - | chr5_3:1709345-1709364 | Msa0790890:CDS | 40.0% | |
| ! | CAGCCAATAAAGTCTTTTGG+TGG | + | chr5_3:1709474-1709493 | None:intergenic | 40.0% |
| CACCAAAAGACTTTATTGGC+TGG | - | chr5_3:1709472-1709491 | Msa0790890:CDS | 40.0% | |
| AGTAGCATCTCCAATGTTGT+TGG | - | chr5_3:1709806-1709825 | Msa0790890:CDS | 40.0% | |
| GTACTCAGTACCAACAACAT+TGG | + | chr5_3:1709819-1709838 | None:intergenic | 40.0% | |
| ! | GTTTTCCAAACTATCGAGGA+TGG | + | chr5_3:1710257-1710276 | None:intergenic | 40.0% |
| TTCTTTAGTCTGTGCTGAAC+TGG | - | chr5_3:1710296-1710315 | Msa0790890:CDS | 40.0% | |
| TGCCTGTTTGATCAAATGGT+TGG | - | chr5_3:1710362-1710381 | Msa0790890:intron | 40.0% | |
| CCAAATGCTTCACTCAAACA+TGG | + | chr5_3:1710595-1710614 | None:intergenic | 40.0% | |
| ! | CCATGTTTGAGTGAAGCATT+TGG | - | chr5_3:1710592-1710611 | Msa0790890:intron | 40.0% |
| AGAATCACAAAGAACTCGAG+AGG | + | chr5_3:1710624-1710643 | None:intergenic | 40.0% | |
| CTCTAAACCTGTGACATCAA+AGG | + | chr5_3:1710663-1710682 | None:intergenic | 40.0% | |
| ! | TTTCTCCTGCAATGCTTTTG+TGG | - | chr5_3:1710822-1710841 | Msa0790890:intron | 40.0% |
| !! | ATGTTCCACAAAAGCATTGC+AGG | + | chr5_3:1710830-1710849 | None:intergenic | 40.0% |
| ACATTCTTCGCATGATGTCG+GGG | - | chr5_3:1707844-1707863 | Msa0790890:three_prime_UTR | 45.0% | |
| GGAATTGTTCTTGTCTCGGT+TGG | - | chr5_3:1708486-1708505 | Msa0790890:intron | 45.0% | |
| TTCTTGTCTCGGTTGGATGT+TGG | - | chr5_3:1708493-1708512 | Msa0790890:intron | 45.0% | |
| TCTTGTCTCGGTTGGATGTT+GGG | - | chr5_3:1708494-1708513 | Msa0790890:intron | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr5_3:1708530-1708549 | Msa0790890:intron | 45.0% | |
| GTCGACTACACGTAAAGAAG+TGG | + | chr5_3:1708566-1708585 | None:intergenic | 45.0% | |
| AATAGGTCTTACGCTGCACA+GGG | + | chr5_3:1708645-1708664 | None:intergenic | 45.0% | |
| ATCCAACTCTGGCAACTCAA+GGG | + | chr5_3:1708668-1708687 | None:intergenic | 45.0% | |
| TTGGTTATTGCTAAACCGGC+AGG | - | chr5_3:1708717-1708736 | Msa0790890:intron | 45.0% | |
| CGTGATCAGATCCCTAGTAA+AGG | + | chr5_3:1708788-1708807 | None:intergenic | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | + | chr5_3:1708845-1708864 | None:intergenic | 45.0% | |
| TCTTGTGCTCCAACATCAAC+TGG | - | chr5_3:1708847-1708866 | Msa0790890:intron | 45.0% | |
| GCTATAAGCACGTGTTATCC+TGG | - | chr5_3:1708913-1708932 | Msa0790890:intron | 45.0% | |
| TTGACCCACTTGAACGTACT+TGG | - | chr5_3:1709055-1709074 | Msa0790890:intron | 45.0% | |
| CAGTCCAAGTACGTTCAAGT+GGG | + | chr5_3:1709062-1709081 | None:intergenic | 45.0% | |
| ACAGTCCAAGTACGTTCAAG+TGG | + | chr5_3:1709063-1709082 | None:intergenic | 45.0% | |
| TACTGCCAAAAACTGGTCGA+AGG | - | chr5_3:1709122-1709141 | Msa0790890:intron | 45.0% | |
| ACTGCCAAAAACTGGTCGAA+GGG | - | chr5_3:1709123-1709142 | Msa0790890:intron | 45.0% | |
| ! | TTTCCCCTTCGACCAGTTTT+TGG | + | chr5_3:1709130-1709149 | None:intergenic | 45.0% |
| !! | CATTCTAGGACTTACGTCAC+TGG | - | chr5_3:1709300-1709319 | Msa0790890:CDS | 45.0% |
| GCTCACTGGGATGATATCTA+CGG | + | chr5_3:1709401-1709420 | None:intergenic | 45.0% | |
| ! | GTTTTCATCAACGCCTGCAA+GGG | + | chr5_3:1710224-1710243 | None:intergenic | 45.0% |
| TTCCAAACTATCGAGGATGG+AGG | + | chr5_3:1710254-1710273 | None:intergenic | 45.0% | |
| ATGTGGTCCTTTGATGTCAC+AGG | - | chr5_3:1710653-1710672 | Msa0790890:intron | 45.0% | |
| !!! | TAATATTTTTTATAAAAAGT+TGG | - | chr5_3:1710142-1710161 | Msa0790890:CDS | 5.0% |
| !!! | AATATTTTTTATAAAAAGTT+GGG | - | chr5_3:1710143-1710162 | Msa0790890:CDS | 5.0% |
| TTCGCATGATGTCGGGGAAA+AGG | - | chr5_3:1707850-1707869 | Msa0790890:three_prime_UTR | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | - | chr5_3:1708408-1708427 | Msa0790890:intron | 50.0% | |
| CAAGACTTCAGCAGGGAGAT+CGG | + | chr5_3:1708467-1708486 | None:intergenic | 50.0% | |
| CTTGTCTCGGTTGGATGTTG+GGG | - | chr5_3:1708495-1708514 | Msa0790890:intron | 50.0% | |
| GTGTAGTCGACCAATCACCT+TGG | - | chr5_3:1708575-1708594 | Msa0790890:intron | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | + | chr5_3:1708646-1708665 | None:intergenic | 50.0% | |
| CTCTGGCAACTCAAGGGAAT+AGG | + | chr5_3:1708662-1708681 | None:intergenic | 50.0% | |
| ! | TTCCCTTGAGTTGCCAGAGT+TGG | - | chr5_3:1708663-1708682 | Msa0790890:intron | 50.0% |
| CATCCAACTCTGGCAACTCA+AGG | + | chr5_3:1708669-1708688 | None:intergenic | 50.0% | |
| ! | CTTGAGTTGCCAGAGTTGGA+TGG | - | chr5_3:1708667-1708686 | Msa0790890:intron | 50.0% |
| ACACGACATCCATCCAACTC+TGG | + | chr5_3:1708679-1708698 | None:intergenic | 50.0% | |
| TATTGCTAAACCGGCAGGAC+TGG | - | chr5_3:1708722-1708741 | Msa0790890:intron | 50.0% | |
| TCACGCTGCCAAAGTTTGAC+AGG | - | chr5_3:1708803-1708822 | Msa0790890:intron | 50.0% | |
| ! | GTGGTCCATTCTTTTTCCCC+AGG | + | chr5_3:1708934-1708953 | None:intergenic | 50.0% |
| ATTGTCTGAGCGACAGAGGT+TGG | - | chr5_3:1709022-1709041 | Msa0790890:intron | 50.0% | |
| CTCTCTGCTAAGCATTTGGG+CGG | + | chr5_3:1709099-1709118 | None:intergenic | 50.0% | |
| CTGCCAAAAACTGGTCGAAG+GGG | - | chr5_3:1709124-1709143 | Msa0790890:intron | 50.0% | |
| ! | GGTTTTCATCAACGCCTGCA+AGG | + | chr5_3:1710225-1710244 | None:intergenic | 50.0% |
| ! | TATCGAGGATGGAGGTGTGT+GGG | + | chr5_3:1710246-1710265 | None:intergenic | 50.0% |
| CACCTCCATCCTCGATAGTT+TGG | - | chr5_3:1710249-1710268 | Msa0790890:CDS | 50.0% | |
| TAGTTCCTGCACGACAAGCA+GGG | + | chr5_3:1710544-1710563 | None:intergenic | 50.0% | |
| CGATCTCCCTGCTGAAGTCT+TGG | - | chr5_3:1708465-1708484 | Msa0790890:intron | 55.0% | |
| ! | TGAGCGACAGAGGTTGGCTA+GGG | - | chr5_3:1709028-1709047 | Msa0790890:intron | 55.0% |
| TCTGCTAAGCATTTGGGCGG+AGG | + | chr5_3:1709096-1709115 | None:intergenic | 55.0% | |
| CTGTCACGACACTGCTCACT+GGG | + | chr5_3:1709414-1709433 | None:intergenic | 55.0% | |
| CAGTGAGCAGTGTCGTGACA+GGG | - | chr5_3:1709413-1709432 | Msa0790890:CDS | 55.0% | |
| ! | CTATCGAGGATGGAGGTGTG+TGG | + | chr5_3:1710247-1710266 | None:intergenic | 55.0% |
| CTAGTTCCTGCACGACAAGC+AGG | + | chr5_3:1710545-1710564 | None:intergenic | 55.0% | |
| CTGCTTGTCGTGCAGGAACT+AGG | - | chr5_3:1710543-1710562 | Msa0790890:intron | 55.0% | |
| TGCTAAACCGGCAGGACTGG+CGG | - | chr5_3:1708725-1708744 | Msa0790890:intron | 60.0% | |
| ! | CTGAGCGACAGAGGTTGGCT+AGG | - | chr5_3:1709027-1709046 | Msa0790890:intron | 60.0% |
| ! | GAGCGACAGAGGTTGGCTAG+GGG | - | chr5_3:1709029-1709048 | Msa0790890:intron | 60.0% |
| CCTGTCACGACACTGCTCAC+TGG | + | chr5_3:1709415-1709434 | None:intergenic | 60.0% | |
| CCAGTGAGCAGTGTCGTGAC+AGG | - | chr5_3:1709412-1709431 | Msa0790890:CDS | 60.0% | |
| GACTTCCCTGCTTGTCGTGC+AGG | - | chr5_3:1710536-1710555 | Msa0790890:intron | 60.0% | |
| ! | TAAACCGGCAGGACTGGCGG+AGG | - | chr5_3:1708728-1708747 | Msa0790890:intron | 65.0% |
| ! | CAGGACTGGCGGAGGTTGGA+CGG | - | chr5_3:1708736-1708755 | Msa0790890:intron | 65.0% |
| CCAACCTCCGCCAGTCCTGC+CGG | + | chr5_3:1708735-1708754 | None:intergenic | 70.0% | |
| ! | CCGGCAGGACTGGCGGAGGT+TGG | - | chr5_3:1708732-1708751 | Msa0790890:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 1707822 | 1710957 | 1707822 | ID=Msa0790890;Name=Msa0790890 |
| chr5_3 | mRNA | 1707822 | 1710957 | 1707822 | ID=Msa0790890-mRNA-1;Parent=Msa0790890;Name=Msa0790890-mRNA-1;_AED=0.30;_eAED=0.30;_QI=33|1|1|1|0.5|0.33|3|422|379 |
| chr5_3 | exon | 1707822 | 1708221 | 1707822 | ID=Msa0790890-mRNA-1:exon:671;Parent=Msa0790890-mRNA-1 |
| chr5_3 | exon | 1709257 | 1710380 | 1709257 | ID=Msa0790890-mRNA-1:exon:670;Parent=Msa0790890-mRNA-1 |
| chr5_3 | exon | 1710887 | 1710957 | 1710887 | ID=Msa0790890-mRNA-1:exon:669;Parent=Msa0790890-mRNA-1 |
| chr5_3 | five_prime_UTR | 1710925 | 1710957 | 1710925 | ID=Msa0790890-mRNA-1:five_prime_utr;Parent=Msa0790890-mRNA-1 |
| chr5_3 | CDS | 1710887 | 1710924 | 1710887 | ID=Msa0790890-mRNA-1:cds;Parent=Msa0790890-mRNA-1 |
| chr5_3 | CDS | 1709279 | 1710380 | 1709279 | ID=Msa0790890-mRNA-1:cds;Parent=Msa0790890-mRNA-1 |
| chr5_3 | three_prime_UTR | 1709257 | 1709278 | 1709257 | ID=Msa0790890-mRNA-1:three_prime_utr;Parent=Msa0790890-mRNA-1 |
| chr5_3 | three_prime_UTR | 1707822 | 1708221 | 1707822 | ID=Msa0790890-mRNA-1:three_prime_utr;Parent=Msa0790890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
