Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830060 | XP_013464328.1 | 96.196 | 368 | 4 | 5 | 1 | 365 | 1 | 361 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830060 | A0A072VAH9 | 96.196 | 368 | 4 | 5 | 1 | 365 | 1 | 361 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030760 | Msa0830060 | -0.811087 | 8.342153e-51 | -8.615850e-47 |
| Msa0039590 | Msa0830060 | -0.814322 | 1.634036e-51 | -8.615850e-47 |
| Msa0053260 | Msa0830060 | -0.813347 | 2.679883e-51 | -8.615850e-47 |
| Msa0094900 | Msa0830060 | -0.804985 | 1.660564e-49 | -8.615850e-47 |
| Msa0098750 | Msa0830060 | -0.822784 | 1.967808e-53 | -8.615850e-47 |
| Msa0608940 | Msa0830060 | -0.808920 | 2.442955e-50 | -8.615850e-47 |
| Msa0612880 | Msa0830060 | -0.815836 | 7.537258e-52 | -8.615850e-47 |
| Msa0612890 | Msa0830060 | -0.804790 | 1.823888e-49 | -8.615850e-47 |
| Msa0638550 | Msa0830060 | -0.801148 | 1.032155e-48 | -8.615850e-47 |
| Msa0642150 | Msa0830060 | -0.813085 | 3.059305e-51 | -8.615850e-47 |
| Msa0649530 | Msa0830060 | -0.807987 | 3.864165e-50 | -8.615850e-47 |
| Msa0653500 | Msa0830060 | -0.821397 | 4.126906e-53 | -8.615850e-47 |
| Msa0663580 | Msa0830060 | -0.808628 | 2.820863e-50 | -8.615850e-47 |
| Msa0667710 | Msa0830060 | -0.801236 | 9.902305e-49 | -8.615850e-47 |
| Msa0681100 | Msa0830060 | -0.801818 | 7.523313e-49 | -8.615850e-47 |
| Msa0691740 | Msa0830060 | -0.815983 | 6.988310e-52 | -8.615850e-47 |
| Msa0708840 | Msa0830060 | -0.805167 | 1.521504e-49 | -8.615850e-47 |
| Msa0712580 | Msa0830060 | -0.805324 | 1.410048e-49 | -8.615850e-47 |
| Msa0714230 | Msa0830060 | -0.811213 | 7.834906e-51 | -8.615850e-47 |
| Msa0742690 | Msa0830060 | -0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0762390 | Msa0830060 | -0.807623 | 4.618263e-50 | -8.615850e-47 |
| Msa0779830 | Msa0830060 | -0.801332 | 9.465488e-49 | -8.615850e-47 |
| Msa0827560 | Msa0830060 | -0.812937 | 3.297650e-51 | -8.615850e-47 |
| Msa0828350 | Msa0830060 | 0.806060 | 9.881358e-50 | -8.615850e-47 |
| Msa0830060 | Msa0831460 | -0.808061 | 3.726473e-50 | -8.615850e-47 |
| Msa0830060 | Msa0833030 | -0.803674 | 3.114936e-49 | -8.615850e-47 |
| Msa0830060 | Msa0849290 | -0.808200 | 3.480522e-50 | -8.615850e-47 |
| Msa0830060 | Msa0861400 | -0.806274 | 8.907524e-50 | -8.615850e-47 |
| Msa0830060 | Msa0862750 | -0.809224 | 2.103349e-50 | -8.615850e-47 |
| Msa0830060 | Msa0911490 | -0.807868 | 4.095627e-50 | -8.615850e-47 |
| Msa0830060 | Msa0941150 | -0.804226 | 2.390928e-49 | -8.615850e-47 |
| Msa0830060 | Msa0967920 | -0.808756 | 2.648406e-50 | -8.615850e-47 |
| Msa0830060 | Msa1066790 | -0.818464 | 1.934013e-52 | -8.615850e-47 |
| Msa0830060 | Msa1066980 | -0.819700 | 1.012264e-52 | -8.615850e-47 |
| Msa0830060 | Msa1098470 | -0.800308 | 1.531600e-48 | -8.615850e-47 |
| Msa0830060 | Msa1196210 | -0.803797 | 2.936966e-49 | -8.615850e-47 |
| Msa0830060 | Msa1197820 | 0.823683 | 1.213808e-53 | -8.615850e-47 |
| Msa0830060 | Msa1203840 | -0.811396 | 7.148350e-51 | -8.615850e-47 |
| Msa0830060 | Msa1229880 | -0.802612 | 5.164946e-49 | -8.615850e-47 |
| Msa0830060 | Msa1251500 | 0.838846 | 2.255609e-57 | -8.615850e-47 |
| Msa0830060 | Msa1252220 | -0.811754 | 5.977094e-51 | -8.615850e-47 |
| Msa0830060 | Msa1292140 | 0.811977 | 5.344440e-51 | -8.615850e-47 |
| Msa0830060 | Msa1296270 | -0.822573 | 2.204004e-53 | -8.615850e-47 |
| Msa0830060 | Msa1320660 | -0.806272 | 8.917726e-50 | -8.615850e-47 |
| Msa0830060 | Msa1330910 | -0.825675 | 4.119399e-54 | -8.615850e-47 |
| Msa0830060 | Msa1348860 | -0.815241 | 1.022489e-51 | -8.615850e-47 |
| Msa0830060 | Msa1349490 | -0.803547 | 3.308633e-49 | -8.615850e-47 |
| Msa0830060 | Msa1372470 | -0.807166 | 5.772668e-50 | -8.615850e-47 |
| Msa0830060 | Msa1373570 | -0.801697 | 7.967078e-49 | -8.615850e-47 |
| Msa0830060 | Msa1382100 | -0.806952 | 6.407531e-50 | -8.615850e-47 |
| Msa0830060 | Msa1392570 | -0.806327 | 8.681159e-50 | -8.615850e-47 |
| Msa0830060 | Msa1434850 | -0.814311 | 1.643744e-51 | -8.615850e-47 |
| Msa0138340 | Msa0830060 | -0.801817 | 7.528750e-49 | -8.615850e-47 |
| Msa0139280 | Msa0830060 | -0.807326 | 5.339335e-50 | -8.615850e-47 |
| Msa0147960 | Msa0830060 | -0.800690 | 1.280618e-48 | -8.615850e-47 |
| Msa0164580 | Msa0830060 | -0.813489 | 2.494286e-51 | -8.615850e-47 |
| Msa0170690 | Msa0830060 | -0.804275 | 2.336373e-49 | -8.615850e-47 |
| Msa0170730 | Msa0830060 | -0.800835 | 1.195946e-48 | -8.615850e-47 |
| Msa0208040 | Msa0830060 | -0.801011 | 1.100997e-48 | -8.615850e-47 |
| Msa0209370 | Msa0830060 | -0.810535 | 1.098235e-50 | -8.615850e-47 |
| Msa0209590 | Msa0830060 | -0.815268 | 1.008367e-51 | -8.615850e-47 |
| Msa0227970 | Msa0830060 | -0.814557 | 1.450344e-51 | -8.615850e-47 |
| Msa0232170 | Msa0830060 | -0.802573 | 5.262976e-49 | -8.615850e-47 |
| Msa0236690 | Msa0830060 | -0.803129 | 4.038816e-49 | -8.615850e-47 |
| Msa0370350 | Msa0830060 | -0.817311 | 3.522473e-52 | -8.615850e-47 |
| Msa0450890 | Msa0830060 | -0.804147 | 2.484209e-49 | -8.615850e-47 |
| Msa0249670 | Msa0830060 | -0.807640 | 4.579706e-50 | -8.615850e-47 |
| Msa0266120 | Msa0830060 | -0.817980 | 2.488584e-52 | -8.615850e-47 |
| Msa0269660 | Msa0830060 | -0.807743 | 4.355238e-50 | -8.615850e-47 |
| Msa0285510 | Msa0830060 | -0.802221 | 6.217801e-49 | -8.615850e-47 |
| Msa0304040 | Msa0830060 | -0.804083 | 2.560820e-49 | -8.615850e-47 |
| Msa0304350 | Msa0830060 | -0.806144 | 9.486506e-50 | -8.615850e-47 |
| Msa0305910 | Msa0830060 | -0.805303 | 1.424599e-49 | -8.615850e-47 |
| Msa0310260 | Msa0830060 | -0.809367 | 1.959395e-50 | -8.615850e-47 |
| Msa0327870 | Msa0830060 | -0.800358 | 1.495993e-48 | -8.615850e-47 |
| Msa0340830 | Msa0830060 | -0.804558 | 2.039405e-49 | -8.615850e-47 |
| Msa0340870 | Msa0830060 | -0.807599 | 4.671532e-50 | -8.615850e-47 |
| Msa0483090 | Msa0830060 | -0.807523 | 4.847843e-50 | -8.615850e-47 |
| Msa0530250 | Msa0830060 | -0.806490 | 8.020767e-50 | -8.615850e-47 |
| Msa0546020 | Msa0830060 | -0.800876 | 1.173309e-48 | -8.615850e-47 |
| Msa0555510 | Msa0830060 | -0.805323 | 1.410905e-49 | -8.615850e-47 |
| Msa0558160 | Msa0830060 | -0.808297 | 3.319708e-50 | -8.615850e-47 |
| Msa0585720 | Msa0830060 | -0.805556 | 1.260807e-49 | -8.615850e-47 |
| Msa0587070 | Msa0830060 | -0.806314 | 8.735910e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830060 | MtrunA17_Chr2g0312281 | 96.196 | 368 | 4 | 5 | 1 | 365 | 1 | 361 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830060 | AT1G56020.1 | 44.386 | 383 | 129 | 14 | 1 | 326 | 1 | 356 | 3.80e-69 | 222 |
| Msa0830060 | AT1G79060.1 | 47.059 | 374 | 136 | 14 | 1 | 326 | 1 | 360 | 3.91e-66 | 214 |
| Msa0830060 | AT3G12970.1 | 43.681 | 364 | 146 | 12 | 1 | 326 | 1 | 343 | 5.41e-65 | 211 |
Find 106 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCCTTGGATTTGGATTC+TGG | 0.210689 | 5_4:-3111280 | None:intergenic |
| AATGGGGTCGGTGGTGGTTA+TGG | 0.277788 | 5_4:-3110889 | None:intergenic |
| CATTCAAACACCTTCTTAAC+AGG | 0.287299 | 5_4:+3111051 | Msa0830060:CDS |
| CTTGGATTTGGATTCTGGTT+CGG | 0.295080 | 5_4:-3111275 | None:intergenic |
| GTCTTATTCCGCTAATGTTC+GGG | 0.304976 | 5_4:+3111553 | Msa0830060:CDS |
| TTGGATTTGGATTCTGGTTC+GGG | 0.307147 | 5_4:-3111274 | None:intergenic |
| CTAGAGCAACGAGGAGCTTT+AGG | 0.310736 | 5_4:-3110921 | None:intergenic |
| GGAAGTGGTGGTGGAGGAGG+AGG | 0.313185 | 5_4:-3110847 | None:intergenic |
| GGTCTTATTCCGCTAATGTT+CGG | 0.324665 | 5_4:+3111552 | Msa0830060:CDS |
| ACTAACCGGATCCTTGGATT+TGG | 0.325878 | 5_4:-3111287 | None:intergenic |
| CCGTCGAATGAGCCTGATTT+GGG | 0.326530 | 5_4:-3111314 | None:intergenic |
| AGGATCTCCCCATGGGAAAA+AGG | 0.328782 | 5_4:-3110718 | None:intergenic |
| CTGATTTGGGTTTGACTAAC+CGG | 0.330218 | 5_4:-3111301 | None:intergenic |
| GGGTTACGGTGGATGGAAAT+CGG | 0.333557 | 5_4:-3111242 | None:intergenic |
| TCCGTCGAATGAGCCTGATT+TGG | 0.334860 | 5_4:-3111315 | None:intergenic |
| TACTCCGGTTCTTAATGTTC+CGG | 0.344626 | 5_4:+3111577 | Msa0830060:CDS |
| GGTGGTGGAGGAGGAGGAAG+AGG | 0.355576 | 5_4:-3110841 | None:intergenic |
| TTCCCTGATGAGTTTAATCT+AGG | 0.363205 | 5_4:-3111443 | None:intergenic |
| TGTTGTTGTGGTTGTGTTTG+TGG | 0.380790 | 5_4:-3110988 | None:intergenic |
| GGGGTCGGTGGTGGTTATGG+AGG | 0.384360 | 5_4:-3110886 | None:intergenic |
| GTCGGTGGTGGTTATGGAGG+TGG | 0.393734 | 5_4:-3110883 | None:intergenic |
| AGCCCTAGATTAAACTCATC+AGG | 0.403596 | 5_4:+3111440 | Msa0830060:CDS |
| GCAACAAACCGGATCACAAC+CGG | 0.404318 | 5_4:+3111348 | Msa0830060:CDS |
| CGGTGGATGGAAATCGGGTT+TGG | 0.411477 | 5_4:-3111236 | None:intergenic |
| CGGTTAGTCAAACCCAAATC+AGG | 0.419318 | 5_4:+3111302 | Msa0830060:CDS |
| CTTCCGACCCGGTTGTGATC+CGG | 0.419540 | 5_4:-3111356 | None:intergenic |
| CGGAACTCGAAGTCAGGTTC+AGG | 0.421176 | 5_4:-3110738 | None:intergenic |
| GGTTACGGTGGATGGAAATC+GGG | 0.428116 | 5_4:-3111241 | None:intergenic |
| CGCTAATGTTCGGGTTACTC+CGG | 0.431041 | 5_4:+3111562 | Msa0830060:CDS |
| GGTTTGACTAACCGGATCCT+TGG | 0.434378 | 5_4:-3111293 | None:intergenic |
| CTTCCACTACGCAAGGGTGC+AGG | 0.436844 | 5_4:+3111402 | Msa0830060:CDS |
| TTGATTCGGGTTACGGTGGA+TGG | 0.462622 | 5_4:-3111249 | None:intergenic |
| GCTTTAGGAGAGAAGAGAAT+GGG | 0.463635 | 5_4:-3110906 | None:intergenic |
| GAAGAGAATGGGGTCGGTGG+TGG | 0.466403 | 5_4:-3110895 | None:intergenic |
| TTCTACAACTCCTGTTAAGA+AGG | 0.469035 | 5_4:-3111061 | None:intergenic |
| AAACAACAACAGCAACAAAC+CGG | 0.470615 | 5_4:+3111337 | Msa0830060:CDS |
| GTAGTTTCACTGGTGGGCCC+AGG | 0.473323 | 5_4:+3111507 | Msa0830060:CDS |
| TTACGAGGCAGTTCAAAATC+CGG | 0.477429 | 5_4:+3111608 | Msa0830060:CDS |
| ATCGGCGGGGAGCATGTTAA+CGG | 0.479779 | 5_4:-3110772 | None:intergenic |
| AGTAGTCCTGGTAGTTTCAC+TGG | 0.486530 | 5_4:+3111497 | Msa0830060:CDS |
| AGAACAACCTCTTCAGAAAA+CGG | 0.487714 | 5_4:+3111080 | Msa0830060:CDS |
| GTGGAGGAGGAGGAAGAGGA+TGG | 0.489473 | 5_4:-3110837 | None:intergenic |
| GTGGGAGATCGTCGTGGTCG+TGG | 0.493390 | 5_4:-3111190 | None:intergenic |
| CTCCTCGTTGCTCTAGCCGC+TGG | 0.494533 | 5_4:+3110928 | Msa0830060:CDS |
| TGAAGACGGAACTCGAAGTC+AGG | 0.500159 | 5_4:-3110744 | None:intergenic |
| GAAAGAAGTTCGAGTAGTCC+TGG | 0.505174 | 5_4:+3111485 | Msa0830060:CDS |
| AGGCAGTTCAAAATCCGGTT+CGG | 0.506379 | 5_4:+3111613 | Msa0830060:CDS |
| AGCTTTAGGAGAGAAGAGAA+TGG | 0.507600 | 5_4:-3110907 | None:intergenic |
| CATACCACGATGCTTAAACC+TGG | 0.509200 | 5_4:-3111525 | None:intergenic |
| TTCCACTACGCAAGGGTGCA+GGG | 0.509657 | 5_4:+3111403 | Msa0830060:CDS |
| AGGTGACATATTGTTGATGC+AGG | 0.511185 | 5_4:-3110691 | None:intergenic |
| CATGCTCTTAGTTGTTGTTG+TGG | 0.518684 | 5_4:-3111000 | None:intergenic |
| CAGGTTTAAGCATCGTGGTA+TGG | 0.520689 | 5_4:+3111526 | Msa0830060:CDS |
| AGAGAAGAGAATGGGGTCGG+TGG | 0.524042 | 5_4:-3110898 | None:intergenic |
| TCGGAGAAGAGTTGATCGGC+GGG | 0.528002 | 5_4:-3110786 | None:intergenic |
| AGAATCCAAATCCAAGGATC+CGG | 0.528972 | 5_4:+3111282 | Msa0830060:CDS |
| CAAACCGGAACATTAAGAAC+CGG | 0.533480 | 5_4:-3111581 | None:intergenic |
| CGGAGTAACCCGAACATTAG+CGG | 0.535515 | 5_4:-3111561 | None:intergenic |
| AATAGCAATGGCAATGGCAA+TGG | 0.537750 | 5_4:+3111698 | Msa0830060:CDS |
| GAGGATGGTTTGAAGTGAAG+AGG | 0.540452 | 5_4:-3110822 | None:intergenic |
| GTCCTGGTAGTTTCACTGGT+GGG | 0.540616 | 5_4:+3111501 | Msa0830060:CDS |
| TCGGCGGGGAGCATGTTAAC+GGG | 0.544100 | 5_4:-3110771 | None:intergenic |
| CCCAAATCAGGCTCATTCGA+CGG | 0.559687 | 5_4:+3111314 | Msa0830060:CDS |
| CTGCCTCGTAAAGAACAAAC+CGG | 0.560141 | 5_4:-3111596 | None:intergenic |
| TAGTGGAAGATGACTCCATC+CGG | 0.561884 | 5_4:-3111388 | None:intergenic |
| GTTTAACACTGTATTGATGA+TGG | 0.565057 | 5_4:-3111730 | None:intergenic |
| CAGAAGAGAGATTCTACAGT+TGG | 0.565312 | 5_4:+3111668 | Msa0830060:CDS |
| TCCCTGATGAGTTTAATCTA+GGG | 0.569389 | 5_4:-3111442 | None:intergenic |
| GAGTCATCTTCCACTACGCA+AGG | 0.574539 | 5_4:+3111395 | Msa0830060:CDS |
| ATACCACGATGCTTAAACCT+GGG | 0.576670 | 5_4:-3111524 | None:intergenic |
| AGAGTTTCTTGAGACCAAGT+AGG | 0.578467 | 5_4:-3110956 | None:intergenic |
| TCCCCTGCACCCTTGCGTAG+TGG | 0.586341 | 5_4:-3111405 | None:intergenic |
| AGTCCTGGTAGTTTCACTGG+TGG | 0.589109 | 5_4:+3111500 | Msa0830060:CDS |
| AGAGATTCTACAGTTGGTGG+TGG | 0.597917 | 5_4:+3111674 | Msa0830060:CDS |
| AGGGTGCAGGGGAGTTTCAG+TGG | 0.598821 | 5_4:+3111415 | Msa0830060:CDS |
| GAAGATGACTCCATCCGGAT+CGG | 0.601075 | 5_4:-3111383 | None:intergenic |
| TCCACTACGCAAGGGTGCAG+GGG | 0.602057 | 5_4:+3111404 | Msa0830060:CDS |
| GTTGGTGGTGGTAATAGCAA+TGG | 0.605304 | 5_4:+3111686 | Msa0830060:CDS |
| GGCCCACCAGTGAAACTACC+AGG | 0.607458 | 5_4:-3111503 | None:intergenic |
| GGATCGGACTTCTTCCGACC+CGG | 0.609212 | 5_4:-3111367 | None:intergenic |
| CAACAAACCGGATCACAACC+GGG | 0.610588 | 5_4:+3111349 | Msa0830060:CDS |
| ACTGTAGAATCTCTCTTCTG+TGG | 0.611488 | 5_4:-3111665 | None:intergenic |
| CGAACCAGAATCCAAATCCA+AGG | 0.619323 | 5_4:+3111276 | Msa0830060:CDS |
| CTGAATCAAGTGAGAGACGT+GGG | 0.621106 | 5_4:-3111208 | None:intergenic |
| TCAGGTTCAGGATCTCCCCA+TGG | 0.621670 | 5_4:-3110726 | None:intergenic |
| GCCCTAGATTAAACTCATCA+GGG | 0.623175 | 5_4:+3111441 | Msa0830060:CDS |
| GCCGATCAACTCTTCTCCGA+CGG | 0.626527 | 5_4:+3110789 | Msa0830060:CDS |
| AAGAGAGATTCTACAGTTGG+TGG | 0.631481 | 5_4:+3111671 | Msa0830060:CDS |
| CAGGTTCAGGATCTCCCCAT+GGG | 0.631871 | 5_4:-3110725 | None:intergenic |
| TTAAGCATCGTGGTATGGAA+CGG | 0.633179 | 5_4:+3111531 | Msa0830060:CDS |
| ACCGTCGGAGAAGAGTTGAT+CGG | 0.635365 | 5_4:-3110790 | None:intergenic |
| AGGAGAGAAGAGAATGGGGT+CGG | 0.636741 | 5_4:-3110901 | None:intergenic |
| CTTTAGGAGAGAAGAGAATG+GGG | 0.642889 | 5_4:-3110905 | None:intergenic |
| GTCGGAGAAGAGTTGATCGG+CGG | 0.661002 | 5_4:-3110787 | None:intergenic |
| GTTCCGGTTTGTTCTTTACG+AGG | 0.661182 | 5_4:+3111593 | Msa0830060:CDS |
| TGTTAACGGGATCTTGAAGA+CGG | 0.664010 | 5_4:-3110758 | None:intergenic |
| AAACCGGATCACAACCGGGT+CGG | 0.670660 | 5_4:+3111353 | Msa0830060:CDS |
| AGTCATCTTCCACTACGCAA+GGG | 0.688392 | 5_4:+3111396 | Msa0830060:CDS |
| AAGAGGAACGAGTTTACCGT+CGG | 0.690013 | 5_4:-3110805 | None:intergenic |
| GGTGGTAATAGCAATGGCAA+TGG | 0.691282 | 5_4:+3111692 | Msa0830060:CDS |
| GACCAAGTAGGTCTTTCCAG+CGG | 0.693826 | 5_4:-3110944 | None:intergenic |
| GGGCCCAGGTTTAAGCATCG+TGG | 0.705575 | 5_4:+3111521 | Msa0830060:CDS |
| TCTGAATCAAGTGAGAGACG+TGG | 0.710233 | 5_4:-3111209 | None:intergenic |
| CGGAGAAGAGTTGATCGGCG+GGG | 0.738101 | 5_4:-3110785 | None:intergenic |
| AGAGACGTGGGAGATCGTCG+TGG | 0.745731 | 5_4:-3111196 | None:intergenic |
| TTCCAGCGGCTAGAGCAACG+AGG | 0.760466 | 5_4:-3110930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTTCAGTGTCTTTCAACAA+TGG | - | chr5_4:3111119-3111138 | None:intergenic | 30.0% |
| ! | GTTTAACACTGTATTGATGA+TGG | - | chr5_4:3111733-3111752 | None:intergenic | 30.0% |
| ! | TTTTCAGTGTCTTTCAACAA+TGG | - | chr5_4:3111119-3111138 | None:intergenic | 30.0% |
| ! | GTTTAACACTGTATTGATGA+TGG | - | chr5_4:3111733-3111752 | None:intergenic | 30.0% |
| !!! | ATGGAGGTGGTGATTTTTTT+GGG | - | chr5_4:3110873-3110892 | None:intergenic | 35.0% |
| !!! | TATGGAGGTGGTGATTTTTT+TGG | - | chr5_4:3110874-3110893 | None:intergenic | 35.0% |
| CATTCAAACACCTTCTTAAC+AGG | + | chr5_4:3111051-3111070 | Msa0830060:CDS | 35.0% | |
| TTCTACAACTCCTGTTAAGA+AGG | - | chr5_4:3111064-3111083 | None:intergenic | 35.0% | |
| AGAACAACCTCTTCAGAAAA+CGG | + | chr5_4:3111080-3111099 | Msa0830060:CDS | 35.0% | |
| AAACAACAACAGCAACAAAC+CGG | + | chr5_4:3111337-3111356 | Msa0830060:CDS | 35.0% | |
| TCCCTGATGAGTTTAATCTA+GGG | - | chr5_4:3111445-3111464 | None:intergenic | 35.0% | |
| TTCCCTGATGAGTTTAATCT+AGG | - | chr5_4:3111446-3111465 | None:intergenic | 35.0% | |
| !!! | ATGGAGGTGGTGATTTTTTT+GGG | - | chr5_4:3110873-3110892 | None:intergenic | 35.0% |
| !!! | TATGGAGGTGGTGATTTTTT+TGG | - | chr5_4:3110874-3110893 | None:intergenic | 35.0% |
| CATTCAAACACCTTCTTAAC+AGG | + | chr5_4:3111051-3111070 | Msa0830060:CDS | 35.0% | |
| TTCTACAACTCCTGTTAAGA+AGG | - | chr5_4:3111064-3111083 | None:intergenic | 35.0% | |
| AGAACAACCTCTTCAGAAAA+CGG | + | chr5_4:3111080-3111099 | Msa0830060:CDS | 35.0% | |
| AAACAACAACAGCAACAAAC+CGG | + | chr5_4:3111337-3111356 | Msa0830060:CDS | 35.0% | |
| TCCCTGATGAGTTTAATCTA+GGG | - | chr5_4:3111445-3111464 | None:intergenic | 35.0% | |
| TTCCCTGATGAGTTTAATCT+AGG | - | chr5_4:3111446-3111465 | None:intergenic | 35.0% | |
| AGGTGACATATTGTTGATGC+AGG | - | chr5_4:3110694-3110713 | None:intergenic | 40.0% | |
| ! | ACCTGAAACCTTTTTCCCAT+GGG | + | chr5_4:3110710-3110729 | Msa0830060:CDS | 40.0% |
| TGTTAACGGGATCTTGAAGA+CGG | - | chr5_4:3110761-3110780 | None:intergenic | 40.0% | |
| !!! | TGGAGGTGGTGATTTTTTTG+GGG | - | chr5_4:3110872-3110891 | None:intergenic | 40.0% |
| ! | CTTTAGGAGAGAAGAGAATG+GGG | - | chr5_4:3110908-3110927 | None:intergenic | 40.0% |
| !! | GCTTTAGGAGAGAAGAGAAT+GGG | - | chr5_4:3110909-3110928 | None:intergenic | 40.0% |
| !! | AGCTTTAGGAGAGAAGAGAA+TGG | - | chr5_4:3110910-3110929 | None:intergenic | 40.0% |
| AGAGTTTCTTGAGACCAAGT+AGG | - | chr5_4:3110959-3110978 | None:intergenic | 40.0% | |
| TGTTGTTGTGGTTGTGTTTG+TGG | - | chr5_4:3110991-3111010 | None:intergenic | 40.0% | |
| ! | CATGCTCTTAGTTGTTGTTG+TGG | - | chr5_4:3111003-3111022 | None:intergenic | 40.0% |
| !! | CAAAGAACCGTTTTCTGAAG+AGG | - | chr5_4:3111090-3111109 | None:intergenic | 40.0% |
| !!! | TTCTGGTTCGGGTTTTGATT+CGG | - | chr5_4:3111266-3111285 | None:intergenic | 40.0% |
| !! | TTGGATTTGGATTCTGGTTC+GGG | - | chr5_4:3111277-3111296 | None:intergenic | 40.0% |
| ! | CTTGGATTTGGATTCTGGTT+CGG | - | chr5_4:3111278-3111297 | None:intergenic | 40.0% |
| AGAATCCAAATCCAAGGATC+CGG | + | chr5_4:3111282-3111301 | Msa0830060:CDS | 40.0% | |
| !! | CTGATTTGGGTTTGACTAAC+CGG | - | chr5_4:3111304-3111323 | None:intergenic | 40.0% |
| AGCCCTAGATTAAACTCATC+AGG | + | chr5_4:3111440-3111459 | Msa0830060:CDS | 40.0% | |
| GCCCTAGATTAAACTCATCA+GGG | + | chr5_4:3111441-3111460 | Msa0830060:CDS | 40.0% | |
| ATACCACGATGCTTAAACCT+GGG | - | chr5_4:3111527-3111546 | None:intergenic | 40.0% | |
| ! | TTAAGCATCGTGGTATGGAA+CGG | + | chr5_4:3111531-3111550 | Msa0830060:CDS | 40.0% |
| !! | GGTCTTATTCCGCTAATGTT+CGG | + | chr5_4:3111552-3111571 | Msa0830060:CDS | 40.0% |
| ! | GTCTTATTCCGCTAATGTTC+GGG | + | chr5_4:3111553-3111572 | Msa0830060:CDS | 40.0% |
| TACTCCGGTTCTTAATGTTC+CGG | + | chr5_4:3111577-3111596 | Msa0830060:CDS | 40.0% | |
| CAAACCGGAACATTAAGAAC+CGG | - | chr5_4:3111584-3111603 | None:intergenic | 40.0% | |
| TTACGAGGCAGTTCAAAATC+CGG | + | chr5_4:3111608-3111627 | Msa0830060:CDS | 40.0% | |
| !!! | TCAAAATCCGGTTCGGTTTT+TGG | + | chr5_4:3111620-3111639 | Msa0830060:CDS | 40.0% |
| !!! | CAAAATCCGGTTCGGTTTTT+GGG | + | chr5_4:3111621-3111640 | Msa0830060:CDS | 40.0% |
| ACTGTAGAATCTCTCTTCTG+TGG | - | chr5_4:3111668-3111687 | None:intergenic | 40.0% | |
| CAGAAGAGAGATTCTACAGT+TGG | + | chr5_4:3111668-3111687 | Msa0830060:CDS | 40.0% | |
| AAGAGAGATTCTACAGTTGG+TGG | + | chr5_4:3111671-3111690 | Msa0830060:CDS | 40.0% | |
| AATAGCAATGGCAATGGCAA+TGG | + | chr5_4:3111698-3111717 | Msa0830060:CDS | 40.0% | |
| AGGTGACATATTGTTGATGC+AGG | - | chr5_4:3110694-3110713 | None:intergenic | 40.0% | |
| ! | ACCTGAAACCTTTTTCCCAT+GGG | + | chr5_4:3110710-3110729 | Msa0830060:CDS | 40.0% |
| TGTTAACGGGATCTTGAAGA+CGG | - | chr5_4:3110761-3110780 | None:intergenic | 40.0% | |
| !!! | TGGAGGTGGTGATTTTTTTG+GGG | - | chr5_4:3110872-3110891 | None:intergenic | 40.0% |
| ! | CTTTAGGAGAGAAGAGAATG+GGG | - | chr5_4:3110908-3110927 | None:intergenic | 40.0% |
| !! | GCTTTAGGAGAGAAGAGAAT+GGG | - | chr5_4:3110909-3110928 | None:intergenic | 40.0% |
| !! | AGCTTTAGGAGAGAAGAGAA+TGG | - | chr5_4:3110910-3110929 | None:intergenic | 40.0% |
| AGAGTTTCTTGAGACCAAGT+AGG | - | chr5_4:3110959-3110978 | None:intergenic | 40.0% | |
| TGTTGTTGTGGTTGTGTTTG+TGG | - | chr5_4:3110991-3111010 | None:intergenic | 40.0% | |
| ! | CATGCTCTTAGTTGTTGTTG+TGG | - | chr5_4:3111003-3111022 | None:intergenic | 40.0% |
| !! | CAAAGAACCGTTTTCTGAAG+AGG | - | chr5_4:3111090-3111109 | None:intergenic | 40.0% |
| !!! | TTCTGGTTCGGGTTTTGATT+CGG | - | chr5_4:3111266-3111285 | None:intergenic | 40.0% |
| !! | TTGGATTTGGATTCTGGTTC+GGG | - | chr5_4:3111277-3111296 | None:intergenic | 40.0% |
| ! | CTTGGATTTGGATTCTGGTT+CGG | - | chr5_4:3111278-3111297 | None:intergenic | 40.0% |
| AGAATCCAAATCCAAGGATC+CGG | + | chr5_4:3111282-3111301 | Msa0830060:CDS | 40.0% | |
| !! | CTGATTTGGGTTTGACTAAC+CGG | - | chr5_4:3111304-3111323 | None:intergenic | 40.0% |
| AGCCCTAGATTAAACTCATC+AGG | + | chr5_4:3111440-3111459 | Msa0830060:CDS | 40.0% | |
| GCCCTAGATTAAACTCATCA+GGG | + | chr5_4:3111441-3111460 | Msa0830060:CDS | 40.0% | |
| ATACCACGATGCTTAAACCT+GGG | - | chr5_4:3111527-3111546 | None:intergenic | 40.0% | |
| ! | TTAAGCATCGTGGTATGGAA+CGG | + | chr5_4:3111531-3111550 | Msa0830060:CDS | 40.0% |
| !! | GGTCTTATTCCGCTAATGTT+CGG | + | chr5_4:3111552-3111571 | Msa0830060:CDS | 40.0% |
| ! | GTCTTATTCCGCTAATGTTC+GGG | + | chr5_4:3111553-3111572 | Msa0830060:CDS | 40.0% |
| TACTCCGGTTCTTAATGTTC+CGG | + | chr5_4:3111577-3111596 | Msa0830060:CDS | 40.0% | |
| CAAACCGGAACATTAAGAAC+CGG | - | chr5_4:3111584-3111603 | None:intergenic | 40.0% | |
| TTACGAGGCAGTTCAAAATC+CGG | + | chr5_4:3111608-3111627 | Msa0830060:CDS | 40.0% | |
| !!! | TCAAAATCCGGTTCGGTTTT+TGG | + | chr5_4:3111620-3111639 | Msa0830060:CDS | 40.0% |
| !!! | CAAAATCCGGTTCGGTTTTT+GGG | + | chr5_4:3111621-3111640 | Msa0830060:CDS | 40.0% |
| ACTGTAGAATCTCTCTTCTG+TGG | - | chr5_4:3111668-3111687 | None:intergenic | 40.0% | |
| CAGAAGAGAGATTCTACAGT+TGG | + | chr5_4:3111668-3111687 | Msa0830060:CDS | 40.0% | |
| AAGAGAGATTCTACAGTTGG+TGG | + | chr5_4:3111671-3111690 | Msa0830060:CDS | 40.0% | |
| AATAGCAATGGCAATGGCAA+TGG | + | chr5_4:3111698-3111717 | Msa0830060:CDS | 40.0% | |
| ! | CACCTGAAACCTTTTTCCCA+TGG | + | chr5_4:3110709-3110728 | Msa0830060:CDS | 45.0% |
| ! | CCTGAAACCTTTTTCCCATG+GGG | + | chr5_4:3110711-3110730 | Msa0830060:CDS | 45.0% |
| AAGAGGAACGAGTTTACCGT+CGG | - | chr5_4:3110808-3110827 | None:intergenic | 45.0% | |
| ! | GAGGATGGTTTGAAGTGAAG+AGG | - | chr5_4:3110825-3110844 | None:intergenic | 45.0% |
| !!! | GATTTTTTTGGGGGAAGTGG+TGG | - | chr5_4:3110862-3110881 | None:intergenic | 45.0% |
| !!! | GGTGATTTTTTTGGGGGAAG+TGG | - | chr5_4:3110865-3110884 | None:intergenic | 45.0% |
| !!! | GGAGGTGGTGATTTTTTTGG+GGG | - | chr5_4:3110871-3110890 | None:intergenic | 45.0% |
| CTGAATCAAGTGAGAGACGT+GGG | - | chr5_4:3111211-3111230 | None:intergenic | 45.0% | |
| TCTGAATCAAGTGAGAGACG+TGG | - | chr5_4:3111212-3111231 | None:intergenic | 45.0% | |
| !!! | TCGGGTTTTGATTCGGGTTA+CGG | - | chr5_4:3111259-3111278 | None:intergenic | 45.0% |
| !!! | TCTGGTTCGGGTTTTGATTC+GGG | - | chr5_4:3111265-3111284 | None:intergenic | 45.0% |
| CGAACCAGAATCCAAATCCA+AGG | + | chr5_4:3111276-3111295 | Msa0830060:CDS | 45.0% | |
| GGATCCTTGGATTTGGATTC+TGG | - | chr5_4:3111283-3111302 | None:intergenic | 45.0% | |
| ACTAACCGGATCCTTGGATT+TGG | - | chr5_4:3111290-3111309 | None:intergenic | 45.0% | |
| ! | CGGTTAGTCAAACCCAAATC+AGG | + | chr5_4:3111302-3111321 | Msa0830060:CDS | 45.0% |
| TAGTGGAAGATGACTCCATC+CGG | - | chr5_4:3111391-3111410 | None:intergenic | 45.0% | |
| AGTCATCTTCCACTACGCAA+GGG | + | chr5_4:3111396-3111415 | Msa0830060:CDS | 45.0% | |
| GAAAGAAGTTCGAGTAGTCC+TGG | + | chr5_4:3111485-3111504 | Msa0830060:CDS | 45.0% | |
| AGTAGTCCTGGTAGTTTCAC+TGG | + | chr5_4:3111497-3111516 | Msa0830060:CDS | 45.0% | |
| CATACCACGATGCTTAAACC+TGG | - | chr5_4:3111528-3111547 | None:intergenic | 45.0% | |
| ! | CAGGTTTAAGCATCGTGGTA+TGG | + | chr5_4:3111526-3111545 | Msa0830060:CDS | 45.0% |
| ! | GTTCCGGTTTGTTCTTTACG+AGG | + | chr5_4:3111593-3111612 | Msa0830060:CDS | 45.0% |
| CTGCCTCGTAAAGAACAAAC+CGG | - | chr5_4:3111599-3111618 | None:intergenic | 45.0% | |
| AGGCAGTTCAAAATCCGGTT+CGG | + | chr5_4:3111613-3111632 | Msa0830060:CDS | 45.0% | |
| ACCAAACCCAAAAACCGAAC+CGG | - | chr5_4:3111630-3111649 | None:intergenic | 45.0% | |
| !! | AGAGATTCTACAGTTGGTGG+TGG | + | chr5_4:3111674-3111693 | Msa0830060:CDS | 45.0% |
| !! | GTTGGTGGTGGTAATAGCAA+TGG | + | chr5_4:3111686-3111705 | Msa0830060:CDS | 45.0% |
| GGTGGTAATAGCAATGGCAA+TGG | + | chr5_4:3111692-3111711 | Msa0830060:CDS | 45.0% | |
| ! | CACCTGAAACCTTTTTCCCA+TGG | + | chr5_4:3110709-3110728 | Msa0830060:CDS | 45.0% |
| ! | CCTGAAACCTTTTTCCCATG+GGG | + | chr5_4:3110711-3110730 | Msa0830060:CDS | 45.0% |
| AAGAGGAACGAGTTTACCGT+CGG | - | chr5_4:3110808-3110827 | None:intergenic | 45.0% | |
| ! | GAGGATGGTTTGAAGTGAAG+AGG | - | chr5_4:3110825-3110844 | None:intergenic | 45.0% |
| !!! | GATTTTTTTGGGGGAAGTGG+TGG | - | chr5_4:3110862-3110881 | None:intergenic | 45.0% |
| !!! | GGTGATTTTTTTGGGGGAAG+TGG | - | chr5_4:3110865-3110884 | None:intergenic | 45.0% |
| !!! | GGAGGTGGTGATTTTTTTGG+GGG | - | chr5_4:3110871-3110890 | None:intergenic | 45.0% |
| CTGAATCAAGTGAGAGACGT+GGG | - | chr5_4:3111211-3111230 | None:intergenic | 45.0% | |
| TCTGAATCAAGTGAGAGACG+TGG | - | chr5_4:3111212-3111231 | None:intergenic | 45.0% | |
| !!! | TCGGGTTTTGATTCGGGTTA+CGG | - | chr5_4:3111259-3111278 | None:intergenic | 45.0% |
| !!! | TCTGGTTCGGGTTTTGATTC+GGG | - | chr5_4:3111265-3111284 | None:intergenic | 45.0% |
| CGAACCAGAATCCAAATCCA+AGG | + | chr5_4:3111276-3111295 | Msa0830060:CDS | 45.0% | |
| GGATCCTTGGATTTGGATTC+TGG | - | chr5_4:3111283-3111302 | None:intergenic | 45.0% | |
| ACTAACCGGATCCTTGGATT+TGG | - | chr5_4:3111290-3111309 | None:intergenic | 45.0% | |
| ! | CGGTTAGTCAAACCCAAATC+AGG | + | chr5_4:3111302-3111321 | Msa0830060:CDS | 45.0% |
| TAGTGGAAGATGACTCCATC+CGG | - | chr5_4:3111391-3111410 | None:intergenic | 45.0% | |
| AGTCATCTTCCACTACGCAA+GGG | + | chr5_4:3111396-3111415 | Msa0830060:CDS | 45.0% | |
| GAAAGAAGTTCGAGTAGTCC+TGG | + | chr5_4:3111485-3111504 | Msa0830060:CDS | 45.0% | |
| AGTAGTCCTGGTAGTTTCAC+TGG | + | chr5_4:3111497-3111516 | Msa0830060:CDS | 45.0% | |
| CATACCACGATGCTTAAACC+TGG | - | chr5_4:3111528-3111547 | None:intergenic | 45.0% | |
| ! | CAGGTTTAAGCATCGTGGTA+TGG | + | chr5_4:3111526-3111545 | Msa0830060:CDS | 45.0% |
| ! | GTTCCGGTTTGTTCTTTACG+AGG | + | chr5_4:3111593-3111612 | Msa0830060:CDS | 45.0% |
| CTGCCTCGTAAAGAACAAAC+CGG | - | chr5_4:3111599-3111618 | None:intergenic | 45.0% | |
| AGGCAGTTCAAAATCCGGTT+CGG | + | chr5_4:3111613-3111632 | Msa0830060:CDS | 45.0% | |
| ACCAAACCCAAAAACCGAAC+CGG | - | chr5_4:3111630-3111649 | None:intergenic | 45.0% | |
| !! | AGAGATTCTACAGTTGGTGG+TGG | + | chr5_4:3111674-3111693 | Msa0830060:CDS | 45.0% |
| !! | GTTGGTGGTGGTAATAGCAA+TGG | + | chr5_4:3111686-3111705 | Msa0830060:CDS | 45.0% |
| GGTGGTAATAGCAATGGCAA+TGG | + | chr5_4:3111692-3111711 | Msa0830060:CDS | 45.0% | |
| CCCCATGGGAAAAAGGTTTC+AGG | - | chr5_4:3110714-3110733 | None:intergenic | 50.0% | |
| AGGATCTCCCCATGGGAAAA+AGG | - | chr5_4:3110721-3110740 | None:intergenic | 50.0% | |
| TGAAGACGGAACTCGAAGTC+AGG | - | chr5_4:3110747-3110766 | None:intergenic | 50.0% | |
| ! | ACCGTCGGAGAAGAGTTGAT+CGG | - | chr5_4:3110793-3110812 | None:intergenic | 50.0% |
| !!! | TTTTTTGGGGGAAGTGGTGG+TGG | - | chr5_4:3110859-3110878 | None:intergenic | 50.0% |
| AGGAGAGAAGAGAATGGGGT+CGG | - | chr5_4:3110904-3110923 | None:intergenic | 50.0% | |
| CTAGAGCAACGAGGAGCTTT+AGG | - | chr5_4:3110924-3110943 | None:intergenic | 50.0% | |
| GACCAAGTAGGTCTTTCCAG+CGG | - | chr5_4:3110947-3110966 | None:intergenic | 50.0% | |
| GGTTACGGTGGATGGAAATC+GGG | - | chr5_4:3111244-3111263 | None:intergenic | 50.0% | |
| GGGTTACGGTGGATGGAAAT+CGG | - | chr5_4:3111245-3111264 | None:intergenic | 50.0% | |
| !! | TTGATTCGGGTTACGGTGGA+TGG | - | chr5_4:3111252-3111271 | None:intergenic | 50.0% |
| !!! | GGTTTTGATTCGGGTTACGG+TGG | - | chr5_4:3111256-3111275 | None:intergenic | 50.0% |
| GGTTTGACTAACCGGATCCT+TGG | - | chr5_4:3111296-3111315 | None:intergenic | 50.0% | |
| CCGTCGAATGAGCCTGATTT+GGG | - | chr5_4:3111317-3111336 | None:intergenic | 50.0% | |
| CCCAAATCAGGCTCATTCGA+CGG | + | chr5_4:3111314-3111333 | Msa0830060:CDS | 50.0% | |
| TCCGTCGAATGAGCCTGATT+TGG | - | chr5_4:3111318-3111337 | None:intergenic | 50.0% | |
| GCAACAAACCGGATCACAAC+CGG | + | chr5_4:3111348-3111367 | Msa0830060:CDS | 50.0% | |
| CAACAAACCGGATCACAACC+GGG | + | chr5_4:3111349-3111368 | Msa0830060:CDS | 50.0% | |
| GAAGATGACTCCATCCGGAT+CGG | - | chr5_4:3111386-3111405 | None:intergenic | 50.0% | |
| GAGTCATCTTCCACTACGCA+AGG | + | chr5_4:3111395-3111414 | Msa0830060:CDS | 50.0% | |
| AGTCCTGGTAGTTTCACTGG+TGG | + | chr5_4:3111500-3111519 | Msa0830060:CDS | 50.0% | |
| GTCCTGGTAGTTTCACTGGT+GGG | + | chr5_4:3111501-3111520 | Msa0830060:CDS | 50.0% | |
| CGGAGTAACCCGAACATTAG+CGG | - | chr5_4:3111564-3111583 | None:intergenic | 50.0% | |
| ! | CGCTAATGTTCGGGTTACTC+CGG | + | chr5_4:3111562-3111581 | Msa0830060:CDS | 50.0% |
| !!! | TCCGGTTCGGTTTTTGGGTT+TGG | + | chr5_4:3111626-3111645 | Msa0830060:CDS | 50.0% |
| CCCCATGGGAAAAAGGTTTC+AGG | - | chr5_4:3110714-3110733 | None:intergenic | 50.0% | |
| AGGATCTCCCCATGGGAAAA+AGG | - | chr5_4:3110721-3110740 | None:intergenic | 50.0% | |
| TGAAGACGGAACTCGAAGTC+AGG | - | chr5_4:3110747-3110766 | None:intergenic | 50.0% | |
| ! | ACCGTCGGAGAAGAGTTGAT+CGG | - | chr5_4:3110793-3110812 | None:intergenic | 50.0% |
| !!! | TTTTTTGGGGGAAGTGGTGG+TGG | - | chr5_4:3110859-3110878 | None:intergenic | 50.0% |
| AGGAGAGAAGAGAATGGGGT+CGG | - | chr5_4:3110904-3110923 | None:intergenic | 50.0% | |
| CTAGAGCAACGAGGAGCTTT+AGG | - | chr5_4:3110924-3110943 | None:intergenic | 50.0% | |
| GACCAAGTAGGTCTTTCCAG+CGG | - | chr5_4:3110947-3110966 | None:intergenic | 50.0% | |
| GGTTACGGTGGATGGAAATC+GGG | - | chr5_4:3111244-3111263 | None:intergenic | 50.0% | |
| GGGTTACGGTGGATGGAAAT+CGG | - | chr5_4:3111245-3111264 | None:intergenic | 50.0% | |
| !! | TTGATTCGGGTTACGGTGGA+TGG | - | chr5_4:3111252-3111271 | None:intergenic | 50.0% |
| !!! | GGTTTTGATTCGGGTTACGG+TGG | - | chr5_4:3111256-3111275 | None:intergenic | 50.0% |
| GGTTTGACTAACCGGATCCT+TGG | - | chr5_4:3111296-3111315 | None:intergenic | 50.0% | |
| CCGTCGAATGAGCCTGATTT+GGG | - | chr5_4:3111317-3111336 | None:intergenic | 50.0% | |
| CCCAAATCAGGCTCATTCGA+CGG | + | chr5_4:3111314-3111333 | Msa0830060:CDS | 50.0% | |
| TCCGTCGAATGAGCCTGATT+TGG | - | chr5_4:3111318-3111337 | None:intergenic | 50.0% | |
| GCAACAAACCGGATCACAAC+CGG | + | chr5_4:3111348-3111367 | Msa0830060:CDS | 50.0% | |
| CAACAAACCGGATCACAACC+GGG | + | chr5_4:3111349-3111368 | Msa0830060:CDS | 50.0% | |
| GAAGATGACTCCATCCGGAT+CGG | - | chr5_4:3111386-3111405 | None:intergenic | 50.0% | |
| GAGTCATCTTCCACTACGCA+AGG | + | chr5_4:3111395-3111414 | Msa0830060:CDS | 50.0% | |
| AGTCCTGGTAGTTTCACTGG+TGG | + | chr5_4:3111500-3111519 | Msa0830060:CDS | 50.0% | |
| GTCCTGGTAGTTTCACTGGT+GGG | + | chr5_4:3111501-3111520 | Msa0830060:CDS | 50.0% | |
| CGGAGTAACCCGAACATTAG+CGG | - | chr5_4:3111564-3111583 | None:intergenic | 50.0% | |
| ! | CGCTAATGTTCGGGTTACTC+CGG | + | chr5_4:3111562-3111581 | Msa0830060:CDS | 50.0% |
| !!! | TCCGGTTCGGTTTTTGGGTT+TGG | + | chr5_4:3111626-3111645 | Msa0830060:CDS | 50.0% |
| CAGGTTCAGGATCTCCCCAT+GGG | - | chr5_4:3110728-3110747 | None:intergenic | 55.0% | |
| TCAGGTTCAGGATCTCCCCA+TGG | - | chr5_4:3110729-3110748 | None:intergenic | 55.0% | |
| CGGAACTCGAAGTCAGGTTC+AGG | - | chr5_4:3110741-3110760 | None:intergenic | 55.0% | |
| ! | ATCGGCGGGGAGCATGTTAA+CGG | - | chr5_4:3110775-3110794 | None:intergenic | 55.0% |
| ! | TCGGAGAAGAGTTGATCGGC+GGG | - | chr5_4:3110789-3110808 | None:intergenic | 55.0% |
| ! | GTCGGAGAAGAGTTGATCGG+CGG | - | chr5_4:3110790-3110809 | None:intergenic | 55.0% |
| GCCGATCAACTCTTCTCCGA+CGG | + | chr5_4:3110789-3110808 | Msa0830060:CDS | 55.0% | |
| ! | AATGGGGTCGGTGGTGGTTA+TGG | - | chr5_4:3110892-3110911 | None:intergenic | 55.0% |
| AGAGAAGAGAATGGGGTCGG+TGG | - | chr5_4:3110901-3110920 | None:intergenic | 55.0% | |
| AGCCGCTGGAAAGACCTACT+TGG | + | chr5_4:3110942-3110961 | Msa0830060:CDS | 55.0% | |
| CGGTGGATGGAAATCGGGTT+TGG | - | chr5_4:3111239-3111258 | None:intergenic | 55.0% | |
| AAACCGGATCACAACCGGGT+CGG | + | chr5_4:3111353-3111372 | Msa0830060:CDS | 55.0% | |
| ! | TTCCACTACGCAAGGGTGCA+GGG | + | chr5_4:3111403-3111422 | Msa0830060:CDS | 55.0% |
| CAGGTTCAGGATCTCCCCAT+GGG | - | chr5_4:3110728-3110747 | None:intergenic | 55.0% | |
| TCAGGTTCAGGATCTCCCCA+TGG | - | chr5_4:3110729-3110748 | None:intergenic | 55.0% | |
| CGGAACTCGAAGTCAGGTTC+AGG | - | chr5_4:3110741-3110760 | None:intergenic | 55.0% | |
| ! | ATCGGCGGGGAGCATGTTAA+CGG | - | chr5_4:3110775-3110794 | None:intergenic | 55.0% |
| ! | TCGGAGAAGAGTTGATCGGC+GGG | - | chr5_4:3110789-3110808 | None:intergenic | 55.0% |
| ! | GTCGGAGAAGAGTTGATCGG+CGG | - | chr5_4:3110790-3110809 | None:intergenic | 55.0% |
| GCCGATCAACTCTTCTCCGA+CGG | + | chr5_4:3110789-3110808 | Msa0830060:CDS | 55.0% | |
| ! | AATGGGGTCGGTGGTGGTTA+TGG | - | chr5_4:3110892-3110911 | None:intergenic | 55.0% |
| AGAGAAGAGAATGGGGTCGG+TGG | - | chr5_4:3110901-3110920 | None:intergenic | 55.0% | |
| AGCCGCTGGAAAGACCTACT+TGG | + | chr5_4:3110942-3110961 | Msa0830060:CDS | 55.0% | |
| CGGTGGATGGAAATCGGGTT+TGG | - | chr5_4:3111239-3111258 | None:intergenic | 55.0% | |
| AAACCGGATCACAACCGGGT+CGG | + | chr5_4:3111353-3111372 | Msa0830060:CDS | 55.0% | |
| ! | TTCCACTACGCAAGGGTGCA+GGG | + | chr5_4:3111403-3111422 | Msa0830060:CDS | 55.0% |
| ! | TCGGCGGGGAGCATGTTAAC+GGG | - | chr5_4:3110774-3110793 | None:intergenic | 60.0% |
| ! | CGGAGAAGAGTTGATCGGCG+GGG | - | chr5_4:3110788-3110807 | None:intergenic | 60.0% |
| GTGGAGGAGGAGGAAGAGGA+TGG | - | chr5_4:3110840-3110859 | None:intergenic | 60.0% | |
| !! | TTTGGGGGAAGTGGTGGTGG+AGG | - | chr5_4:3110856-3110875 | None:intergenic | 60.0% |
| ! | GTCGGTGGTGGTTATGGAGG+TGG | - | chr5_4:3110886-3110905 | None:intergenic | 60.0% |
| GAAGAGAATGGGGTCGGTGG+TGG | - | chr5_4:3110898-3110917 | None:intergenic | 60.0% | |
| TTCCAGCGGCTAGAGCAACG+AGG | - | chr5_4:3110933-3110952 | None:intergenic | 60.0% | |
| AGAGACGTGGGAGATCGTCG+TGG | - | chr5_4:3111199-3111218 | None:intergenic | 60.0% | |
| CTTCCGACCCGGTTGTGATC+CGG | - | chr5_4:3111359-3111378 | None:intergenic | 60.0% | |
| GGATCGGACTTCTTCCGACC+CGG | - | chr5_4:3111370-3111389 | None:intergenic | 60.0% | |
| GGGTCGGAAGAAGTCCGATC+CGG | + | chr5_4:3111369-3111388 | Msa0830060:CDS | 60.0% | |
| CGGAAGAAGTCCGATCCGGA+TGG | + | chr5_4:3111373-3111392 | Msa0830060:CDS | 60.0% | |
| ! | CTTCCACTACGCAAGGGTGC+AGG | + | chr5_4:3111402-3111421 | Msa0830060:CDS | 60.0% |
| ! | TCCACTACGCAAGGGTGCAG+GGG | + | chr5_4:3111404-3111423 | Msa0830060:CDS | 60.0% |
| AGGGTGCAGGGGAGTTTCAG+TGG | + | chr5_4:3111415-3111434 | Msa0830060:CDS | 60.0% | |
| GGCCCACCAGTGAAACTACC+AGG | - | chr5_4:3111506-3111525 | None:intergenic | 60.0% | |
| ! | GTAGTTTCACTGGTGGGCCC+AGG | + | chr5_4:3111507-3111526 | Msa0830060:CDS | 60.0% |
| ! | GGGCCCAGGTTTAAGCATCG+TGG | + | chr5_4:3111521-3111540 | Msa0830060:CDS | 60.0% |
| ! | TCGGCGGGGAGCATGTTAAC+GGG | - | chr5_4:3110774-3110793 | None:intergenic | 60.0% |
| ! | CGGAGAAGAGTTGATCGGCG+GGG | - | chr5_4:3110788-3110807 | None:intergenic | 60.0% |
| GTGGAGGAGGAGGAAGAGGA+TGG | - | chr5_4:3110840-3110859 | None:intergenic | 60.0% | |
| !! | TTTGGGGGAAGTGGTGGTGG+AGG | - | chr5_4:3110856-3110875 | None:intergenic | 60.0% |
| ! | GTCGGTGGTGGTTATGGAGG+TGG | - | chr5_4:3110886-3110905 | None:intergenic | 60.0% |
| GAAGAGAATGGGGTCGGTGG+TGG | - | chr5_4:3110898-3110917 | None:intergenic | 60.0% | |
| TTCCAGCGGCTAGAGCAACG+AGG | - | chr5_4:3110933-3110952 | None:intergenic | 60.0% | |
| AGAGACGTGGGAGATCGTCG+TGG | - | chr5_4:3111199-3111218 | None:intergenic | 60.0% | |
| CTTCCGACCCGGTTGTGATC+CGG | - | chr5_4:3111359-3111378 | None:intergenic | 60.0% | |
| GGATCGGACTTCTTCCGACC+CGG | - | chr5_4:3111370-3111389 | None:intergenic | 60.0% | |
| GGGTCGGAAGAAGTCCGATC+CGG | + | chr5_4:3111369-3111388 | Msa0830060:CDS | 60.0% | |
| CGGAAGAAGTCCGATCCGGA+TGG | + | chr5_4:3111373-3111392 | Msa0830060:CDS | 60.0% | |
| ! | CTTCCACTACGCAAGGGTGC+AGG | + | chr5_4:3111402-3111421 | Msa0830060:CDS | 60.0% |
| ! | TCCACTACGCAAGGGTGCAG+GGG | + | chr5_4:3111404-3111423 | Msa0830060:CDS | 60.0% |
| AGGGTGCAGGGGAGTTTCAG+TGG | + | chr5_4:3111415-3111434 | Msa0830060:CDS | 60.0% | |
| GGCCCACCAGTGAAACTACC+AGG | - | chr5_4:3111506-3111525 | None:intergenic | 60.0% | |
| ! | GTAGTTTCACTGGTGGGCCC+AGG | + | chr5_4:3111507-3111526 | Msa0830060:CDS | 60.0% |
| ! | GGGCCCAGGTTTAAGCATCG+TGG | + | chr5_4:3111521-3111540 | Msa0830060:CDS | 60.0% |
| !! | GGTGGTGGAGGAGGAGGAAG+AGG | - | chr5_4:3110844-3110863 | None:intergenic | 65.0% |
| !! | GGAAGTGGTGGTGGAGGAGG+AGG | - | chr5_4:3110850-3110869 | None:intergenic | 65.0% |
| ! | GGGGTCGGTGGTGGTTATGG+AGG | - | chr5_4:3110889-3110908 | None:intergenic | 65.0% |
| CTCCTCGTTGCTCTAGCCGC+TGG | + | chr5_4:3110928-3110947 | Msa0830060:CDS | 65.0% | |
| GTGGGAGATCGTCGTGGTCG+TGG | - | chr5_4:3111193-3111212 | None:intergenic | 65.0% | |
| TCCCCTGCACCCTTGCGTAG+TGG | - | chr5_4:3111408-3111427 | None:intergenic | 65.0% | |
| !! | GGTGGTGGAGGAGGAGGAAG+AGG | - | chr5_4:3110844-3110863 | None:intergenic | 65.0% |
| !! | GGAAGTGGTGGTGGAGGAGG+AGG | - | chr5_4:3110850-3110869 | None:intergenic | 65.0% |
| ! | GGGGTCGGTGGTGGTTATGG+AGG | - | chr5_4:3110889-3110908 | None:intergenic | 65.0% |
| CTCCTCGTTGCTCTAGCCGC+TGG | + | chr5_4:3110928-3110947 | Msa0830060:CDS | 65.0% | |
| GTGGGAGATCGTCGTGGTCG+TGG | - | chr5_4:3111193-3111212 | None:intergenic | 65.0% | |
| TCCCCTGCACCCTTGCGTAG+TGG | - | chr5_4:3111408-3111427 | None:intergenic | 65.0% | |
| !! | GGGGGAAGTGGTGGTGGAGG+AGG | - | chr5_4:3110853-3110872 | None:intergenic | 70.0% |
| !! | GGGGGAAGTGGTGGTGGAGG+AGG | - | chr5_4:3110853-3110872 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3110681 | 3111778 | 3110681 | ID=Msa0830060;Name=Msa0830060 |
| chr5_4 | mRNA | 3110681 | 3111778 | 3110681 | ID=Msa0830060-mRNA-1;Parent=Msa0830060;Name=Msa0830060-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|365 |
| chr5_4 | exon | 3110681 | 3111778 | 3110681 | ID=Msa0830060-mRNA-1:exon:1131;Parent=Msa0830060-mRNA-1 |
| chr5_4 | CDS | 3110681 | 3111778 | 3110681 | ID=Msa0830060-mRNA-1:cds;Parent=Msa0830060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
