AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066980 MtrunA17_Chr7g0247871 92.620 542 16 3 1 526 1 534 0.0 989
Msa1066980 MtrunA17_Chr8g0348761 71.644 596 91 8 1 526 1 588 0.0 815
Msa1066980 MtrunA17_Chr3g0104361 73.864 440 92 2 102 526 85 516 0.0 673
Msa1066980 MtrunA17_Chr7g0241591 39.303 402 233 3 127 525 113 506 2.68e-100 311
Msa1066980 MtrunA17_Chr4g0064801 38.343 519 270 12 39 522 21 524 2.59e-99 310
Msa1066980 MtrunA17_Chr5g0429461 38.272 405 235 3 127 524 194 590 1.63e-86 278
Msa1066980 MtrunA17_Chr2g0290941 94.286 140 0 1 350 489 1 132 1.75e-86 263
Msa1066980 MtrunA17_Chr4g0013731 35.841 452 237 8 118 526 2 443 9.04e-78 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066980 AT4G00370.1 72.973 555 107 7 1 526 1 541 0.0 771
Msa1066980 AT2G29650.1 71.492 449 104 3 94 526 72 512 0.0 657
Msa1066980 AT2G29650.3 77.000 400 84 1 127 526 9 400 0.0 640
Msa1066980 AT2G29650.4 76.884 398 84 1 129 526 1 390 0.0 635
Msa1066980 AT2G29650.2 69.419 327 84 2 94 404 72 398 4.08e-161 464
Msa1066980 AT2G38060.1 40.842 404 226 4 127 525 117 512 1.99e-102 317
Msa1066980 AT3G46980.1 40.394 406 226 4 127 524 130 527 9.81e-95 298
Msa1066980 AT3G46980.3 40.394 406 226 4 127 524 130 527 1.11e-94 298
Msa1066980 AT3G46980.4 40.394 406 226 4 127 524 178 575 1.37e-94 299
Msa1066980 AT5G20380.1 39.535 430 227 9 115 522 90 508 5.52e-92 291
Msa1066980 AT5G20380.2 39.535 430 227 9 115 522 142 560 2.05e-91 291
Msa1066980 AT2G38060.2 41.667 336 192 2 127 458 117 452 1.26e-87 281
Msa1066980 AT3G46980.5 38.873 355 201 4 178 524 1 347 1.32e-76 245
Msa1066980 AT3G46980.7 38.873 355 201 4 178 524 1 347 1.32e-76 245
Msa1066980 AT3G46980.8 38.873 355 201 4 178 524 1 347 1.36e-76 245
Msa1066980 AT3G46980.2 38.873 355 201 4 178 524 1 347 1.36e-76 245
Msa1066980 AT5G44370.1 34.940 415 245 6 127 526 28 432 2.04e-74 242
Msa1066980 AT3G46980.6 36.897 290 167 4 243 524 2 283 8.51e-54 184

Find 150 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATTATGCGTGCCTTTA+TGG 0.088357 7_2:-61128551 Msa1066980:CDS
TGCTCACGAGTTTCAATTTC+AGG 0.182035 7_2:-61126750 Msa1066980:CDS
CTTAGATTCTTGGTGGTATA+TGG 0.187897 7_2:-61128678 Msa1066980:intron
TTCTTGGAATGACGTGTTTA+AGG 0.216470 7_2:-61126551 Msa1066980:CDS
GGTGTGCTTGCTGGCGTCTT+TGG 0.227575 7_2:-61126698 Msa1066980:CDS
TTCACTTCTTTCATTGCTTC+AGG 0.233451 7_2:-61130573 Msa1066980:intron
GAAGCATCTGGTTTGCCTTT+TGG 0.244662 7_2:-61127944 Msa1066980:CDS
AAGTTCAACCTCACTGAATC+TGG 0.253604 7_2:-61127468 Msa1066980:CDS
CTTATTATGCGTGCCTTTAT+GGG 0.279316 7_2:-61128550 Msa1066980:CDS
CAATGTCACAAGAGTTTAAC+TGG 0.281775 7_2:-61128868 Msa1066980:CDS
ACACCTATTGCTGCAAGAAT+TGG 0.294493 7_2:-61128586 Msa1066980:CDS
CTGATGGCCACCCAAGGTTT+TGG 0.299035 7_2:+61127991 None:intergenic
CAGAAAAGGTATTTGCAAAA+AGG 0.300898 7_2:+61126181 None:intergenic
CCGAGATCCGGGTCATCTTT+TGG 0.301202 7_2:+61127759 None:intergenic
ATGGCCGTGTTTGCAAATAT+TGG 0.302731 7_2:-61127417 Msa1066980:CDS
TTCTATCAAAAGCACCAGTT+TGG 0.314560 7_2:-61127662 Msa1066980:CDS
CATCTGTTTCGGACATTCCT+TGG 0.328614 7_2:-61127692 Msa1066980:CDS
TCTCTCATTTCTGCCACAAT+TGG 0.328674 7_2:-61127629 Msa1066980:CDS
GTCCAAGTGGATTCCAGTTT+CGG 0.337421 7_2:-61128096 Msa1066980:CDS
TACCTTTCGAACAGTTGTTA+TGG 0.353371 7_2:+61127356 None:intergenic
TCAATTTCAGGGCGTATTGC+TGG 0.355168 7_2:-61126738 Msa1066980:CDS
CATTTCAAATCAGTATTAGA+TGG 0.356536 7_2:-61126249 Msa1066980:three_prime_UTR
ATGCAATCAATCGGGTTTCT+AGG 0.357772 7_2:-61127178 Msa1066980:CDS
TCTGTTGCATTATACATAAT+AGG 0.358132 7_2:-61126526 Msa1066980:CDS
GATCTGCTTCTCTCCGAAAC+TGG 0.362948 7_2:+61128083 None:intergenic
CAAAAGGGTTACTCGCAATC+TGG 0.368248 7_2:+61129511 None:intergenic
CTCTCATTTCTGCCACAATT+GGG 0.368700 7_2:-61127628 Msa1066980:CDS
TTGGATCCCTTGGAAGCATC+TGG 0.370421 7_2:-61127956 Msa1066980:CDS
CTTGGACAGTATATTATTCA+TGG 0.377433 7_2:+61128112 None:intergenic
GGGAAGGTCGTGCTAGGATT+TGG 0.384068 7_2:-61128640 Msa1066980:CDS
GGCTCTTATGTGTTCTTCCA+TGG 0.389923 7_2:-61127446 Msa1066980:CDS
AATACAGCAGGTGTGCTTGC+TGG 0.392626 7_2:-61126707 Msa1066980:CDS
AACCTCACCGATTCCCATAA+AGG 0.393601 7_2:+61128537 None:intergenic
TCTATCAAAAGCACCAGTTT+GGG 0.404421 7_2:-61127661 Msa1066980:CDS
CAAAAGATGACCCGGATCTC+GGG 0.407606 7_2:-61127758 Msa1066980:CDS
GCAATTCTATTGGAAGGAAA+TGG 0.413376 7_2:-61129330 Msa1066980:CDS
ATACATCCCTTGCTATATAT+AGG 0.416319 7_2:+61126425 None:intergenic
GATGCCTACTTACTATAATC+AGG 0.418993 7_2:-61127583 Msa1066980:intron
AACAGGCGAAGCAATTCTAT+TGG 0.419363 7_2:-61129340 Msa1066980:CDS
GTCTTTGGCACAGCTGCAAC+TGG 0.422764 7_2:-61126683 Msa1066980:CDS
TTAGATTCTTGGTGGTATAT+GGG 0.425597 7_2:-61128677 Msa1066980:intron
CACCTATTGCTGCAAGAATT+GGG 0.432187 7_2:-61128585 Msa1066980:CDS
CCTTGGTTCTGTGGTAGGCT+TGG 0.435784 7_2:-61128033 Msa1066980:CDS
ATGTACCTTGGTTCTGTGGT+AGG 0.451338 7_2:-61128038 Msa1066980:CDS
TGGCAGATCATGCAATCAAT+CGG 0.452349 7_2:-61127187 Msa1066980:intron
CAATTTCAGGGCGTATTGCT+GGG 0.455105 7_2:-61126737 Msa1066980:CDS
TGCTAGGATTTGGAGTTGTA+TGG 0.455824 7_2:-61128630 Msa1066980:CDS
CCAAAAGATGACCCGGATCT+CGG 0.456410 7_2:-61127759 Msa1066980:CDS
ATGCGTGCCTTTATGGGAAT+CGG 0.457296 7_2:-61128544 Msa1066980:CDS
ATTGAACAAAGAGAAGTATA+CGG 0.459678 7_2:-61129471 Msa1066980:CDS
ATTGTGCATGGCATGCAGTC+AGG 0.462532 7_2:-61127101 Msa1066980:intron
TCGGATGCCTTCTCACAGTC+TGG 0.475944 7_2:-61126941 Msa1066980:CDS
CTCCGAAACTGGAATCCACT+TGG 0.479863 7_2:+61128094 None:intergenic
AGCCCAATTCTTGCAGCAAT+AGG 0.485315 7_2:+61128583 None:intergenic
GGCAGCAACTTCCTAAGCGC+TGG 0.486573 7_2:-61129287 Msa1066980:CDS
TATTCCAATCATCAAGACAT+TGG 0.488754 7_2:-61126914 Msa1066980:CDS
CGTATCGAAAACATCTGTTT+CGG 0.489579 7_2:-61127703 Msa1066980:CDS
ATATATTCTAACATGTGATA+AGG 0.492149 7_2:-61130675 Msa1066980:five_prime_UTR
ATTAAACCACTTATAGCCAT+TGG 0.496105 7_2:+61130609 None:intergenic
ACATAATAGGCACACTGGTA+TGG 0.496734 7_2:-61126513 Msa1066980:CDS
GAAAGAAGTGAAGCTTCTGT+TGG 0.499201 7_2:+61130584 None:intergenic
GTGGCATCTGATGAAGGAAC+AGG 0.503282 7_2:-61129357 Msa1066980:CDS
CTGGGGCTATCTACTTACTC+AGG 0.504684 7_2:-61128807 Msa1066980:intron
TGGTCCAATGTCTTGATGAT+TGG 0.505896 7_2:+61126910 None:intergenic
TTTCCTCTACCCCGAGATCC+GGG 0.506435 7_2:+61127748 None:intergenic
CCCTCCAATATTTGCAAACA+CGG 0.508594 7_2:+61127413 None:intergenic
GCTCACGAGTTTCAATTTCA+GGG 0.508678 7_2:-61126749 Msa1066980:CDS
AGGCAAACCAGATGCTTCCA+AGG 0.509648 7_2:+61127949 None:intergenic
TTTGATAGAATTAATTTCCA+AGG 0.514333 7_2:+61127675 None:intergenic
CAGTTAAACTCTTGTGACAT+TGG 0.514473 7_2:+61128869 None:intergenic
GACAGTATATTATTCATGGC+GGG 0.516181 7_2:+61128116 None:intergenic
ATGGTTCGCTGGTATCTCCT+TGG 0.520372 7_2:-61129311 Msa1066980:CDS
TATTATCAACATAGCACCAA+TGG 0.522591 7_2:-61130625 Msa1066980:exon
AAAGTGAGAAGTTAAAATCA+AGG 0.525786 7_2:+61126363 None:intergenic
TTCTTATCCAAAACCTTGGG+TGG 0.525807 7_2:-61127998 Msa1066980:CDS
GAGATTATAAGAGCCCAAAC+TGG 0.527723 7_2:+61127648 None:intergenic
TGACCCGGATCTCGGGGTAG+AGG 0.528268 7_2:-61127751 Msa1066980:CDS
TATATTATTCATGGCGGGCA+TGG 0.532851 7_2:+61128121 None:intergenic
GGTATATGGGCAGACAAACT+TGG 0.535648 7_2:-61128664 Msa1066980:CDS
GATCCTGTGGCATCTGATGA+AGG 0.540723 7_2:-61129363 Msa1066980:CDS
ATATATTTCAAGTTTGATTG+TGG 0.540761 7_2:+61126101 None:intergenic
ATTACGATAAGCCAGCGCTT+AGG 0.542049 7_2:+61129276 None:intergenic
GGCAGATCATGCAATCAATC+GGG 0.542373 7_2:-61127186 Msa1066980:intron
ACCTTTGCTAACTAACGTGT+CGG 0.543679 7_2:+61127383 None:intergenic
TGGAGTTGTATGGTGGTCAA+TGG 0.544883 7_2:-61128620 Msa1066980:CDS
GAATAAATGTTCCCCAATTG+TGG 0.546749 7_2:+61127616 None:intergenic
GTATATAGCGGCATGTACCT+TGG 0.546888 7_2:-61128050 Msa1066980:CDS
GTTCGCTGGTATCTCCTTGG+TGG 0.550695 7_2:-61129308 Msa1066980:CDS
CAAAGAGAAGTATACGGACT+AGG 0.551941 7_2:-61129465 Msa1066980:CDS
CTTGGTGGGAAGGTCGTGCT+AGG 0.552485 7_2:-61128646 Msa1066980:CDS
CGGCATGTACCTTGGTTCTG+TGG 0.552939 7_2:-61128042 Msa1066980:CDS
TTCCATAACAACTGTTCGAA+AGG 0.559878 7_2:-61127358 Msa1066980:intron
TCTCATTTCTGCCACAATTG+GGG 0.559881 7_2:-61127627 Msa1066980:CDS
AAATGTATATCAGTTAAGAA+AGG 0.560962 7_2:-61129580 Msa1066980:CDS
ATGCACAATACTGCCATGGC+GGG 0.561244 7_2:+61127115 None:intergenic
TGAAGAGTGTGATGATGTAA+AGG 0.564550 7_2:-61126457 Msa1066980:three_prime_UTR
ATGTATAGAGAGAGATACCA+TGG 0.565302 7_2:-61126408 Msa1066980:three_prime_UTR
GGCGAAGCAATTCTATTGGA+AGG 0.565577 7_2:-61129336 Msa1066980:CDS
TAATTTCAGACTGTCATGCA+TGG 0.565924 7_2:+61130714 None:intergenic
GAACATTTATTCTATTAACA+TGG 0.567906 7_2:-61127605 Msa1066980:CDS
CGCCATGGCAGTATTGTGCA+TGG 0.568359 7_2:-61127113 Msa1066980:CDS
AGTTCAACCTCACTGAATCT+GGG 0.568787 7_2:-61127467 Msa1066980:CDS
ATTGGAAGGAAATGGTTCGC+TGG 0.569594 7_2:-61129322 Msa1066980:CDS
AGAAGTTAAAATCAAGGCCA+CGG 0.579729 7_2:+61126369 None:intergenic
CCATGTCAAAACACCCGCCA+TGG 0.580413 7_2:-61127128 Msa1066980:CDS
GGCAGACAAACTTGGTGGGA+AGG 0.582949 7_2:-61128656 Msa1066980:CDS
GCCGTGTTTGCAAATATTGG+AGG 0.583856 7_2:-61127414 Msa1066980:CDS
CTGGGACTATCGAATACAGC+AGG 0.588965 7_2:-61126719 Msa1066980:CDS
ATAACCTGATTATAGTAAGT+AGG 0.589115 7_2:+61127579 None:intergenic
CCAAATGAGTAAAACACTGA+TGG 0.590761 7_2:+61127975 None:intergenic
ATAGCACCAATGGCTATAAG+TGG 0.591240 7_2:-61130615 Msa1066980:exon
GGCAAACCAGATGCTTCCAA+GGG 0.591797 7_2:+61127950 None:intergenic
GTTCCTTCATCAGATGCCAC+AGG 0.595225 7_2:+61129360 None:intergenic
AATATTTGCAAACACGGCCA+TGG 0.597293 7_2:+61127419 None:intergenic
AACTGGAACAGTGCAACAGT+TGG 0.597654 7_2:-61128851 Msa1066980:CDS
TGTGTGGCCTATATATAGCA+AGG 0.599611 7_2:-61126432 Msa1066980:three_prime_UTR
TGTTCTTCCATGGTTAACCA+TGG 0.609195 7_2:-61127436 Msa1066980:CDS
TTTGCATCTAAAGTAAGCAA+AGG 0.609849 7_2:-61126312 Msa1066980:three_prime_UTR
CTGCACATAAAATTTGACAC+AGG 0.612237 7_2:-61126161 Msa1066980:three_prime_UTR
TGCCATGCACAATACTGCCA+TGG 0.612350 7_2:+61127111 None:intergenic
TGAGAACTGAAAGGTGAGAG+TGG 0.622436 7_2:+61130652 None:intergenic
ATGTTCTTATAAACTGAGTG+TGG 0.623337 7_2:+61126209 None:intergenic
TATGGGCAGACAAACTTGGT+GGG 0.623534 7_2:-61128660 Msa1066980:CDS
TAGATGCAAACTCACTTCAG+AGG 0.627690 7_2:+61126325 None:intergenic
ATATGGGCAGACAAACTTGG+TGG 0.628033 7_2:-61128661 Msa1066980:CDS
TGAATAATATACTGTCCAAG+TGG 0.631779 7_2:-61128109 Msa1066980:CDS
TAGGATTTGGAGTTGTATGG+TGG 0.635420 7_2:-61128627 Msa1066980:CDS
TAGCTCACCAAAAGATGACC+CGG 0.637431 7_2:-61127766 Msa1066980:CDS
AACACGGCCATGGTTAACCA+TGG 0.638076 7_2:+61127429 None:intergenic
ATTATACATAATAGGCACAC+TGG 0.640114 7_2:-61126518 Msa1066980:CDS
AAAAGATGACCCGGATCTCG+GGG 0.643756 7_2:-61127757 Msa1066980:CDS
ATAAAGACCAGACTGTGAGA+AGG 0.653878 7_2:+61126934 None:intergenic
CCGTGTTTGCAAATATTGGA+GGG 0.658652 7_2:-61127413 Msa1066980:CDS
TGTTTGCAAATATTGGAGGG+TGG 0.661112 7_2:-61127410 Msa1066980:CDS
GCACGCATAATAAGCAAACA+AGG 0.665091 7_2:+61128559 None:intergenic
AAAACACTGATGGCCACCCA+AGG 0.665588 7_2:+61127985 None:intergenic
ACTGGATACATACTTCAAAG+AGG 0.666637 7_2:-61126665 Msa1066980:intron
GTGTGGCCTATATATAGCAA+GGG 0.666762 7_2:-61126431 Msa1066980:three_prime_UTR
AAGGATCTATCACTTCAAAG+AGG 0.667820 7_2:-61129561 Msa1066980:CDS
GGACAGTATATTATTCATGG+CGG 0.671998 7_2:+61128115 None:intergenic
ATATGACATTGATGAAACGA+AGG 0.676264 7_2:-61129388 Msa1066980:CDS
TGCCTTTATGGGAATCGGTG+AGG 0.677573 7_2:-61128539 Msa1066980:intron
TCACTTTCGCTAGTATATAG+CGG 0.679969 7_2:-61128062 Msa1066980:CDS
TTAGGAAGTTGCTGCCACCA+AGG 0.680539 7_2:+61129294 None:intergenic
TGAAACGAAGGTAGATCCTG+TGG 0.681518 7_2:-61129376 Msa1066980:CDS
TGATGATGTAAAGGAATGTG+TGG 0.694227 7_2:-61126448 Msa1066980:three_prime_UTR
CATGCACAATACTGCCATGG+CGG 0.706051 7_2:+61127114 None:intergenic
CCAAGCCTACCACAGAACCA+AGG 0.711808 7_2:+61128033 None:intergenic
AAATTACTCACAGCATAACG+TGG 0.722801 7_2:+61126890 None:intergenic
ATAAGAGCCCAGATTCAGTG+AGG 0.769613 7_2:+61127460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTAAATAAAAAAATT+TGG - chr7_2:61126447-61126466 Msa1066980:three_prime_UTR 0.0%
!!! TTATTTTTTTTATTTTTTTT+TGG + chr7_2:61126904-61126923 None:intergenic 0.0%
!!! TTTTAAATAAAAAAATTTGG+TGG - chr7_2:61126450-61126469 Msa1066980:three_prime_UTR 10.0%
!!! CATAATTTTTTTTTTTTACA+GGG - chr7_2:61129946-61129965 Msa1066980:intron 10.0%
!! AAAAATGAAAATGAATTTAG+TGG + chr7_2:61126391-61126410 None:intergenic 15.0%
!! AAAAATTAATACAAAAAGAC+AGG + chr7_2:61126546-61126565 None:intergenic 15.0%
!!! TGATATTTTGATAAAAACTA+TGG - chr7_2:61126716-61126735 Msa1066980:CDS 15.0%
!!! ATTTTGTAGTTTTTTTCTTA+GGG + chr7_2:61126837-61126856 None:intergenic 15.0%
!! AAAATAAAAAAAATAACACG+TGG - chr7_2:61126908-61126927 Msa1066980:CDS 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG - chr7_2:61127021-61127040 Msa1066980:intron 15.0%
!! CTTAATATATATGGATAATA+TGG - chr7_2:61129704-61129723 Msa1066980:intron 15.0%
!! AAAAAATTATGGTTTGAATT+AGG + chr7_2:61129937-61129956 None:intergenic 15.0%
!! CCTGTAAAAAAAAAAAATTA+TGG + chr7_2:61129948-61129967 None:intergenic 15.0%
!!! CCATAATTTTTTTTTTTTAC+AGG - chr7_2:61129945-61129964 Msa1066980:intron 15.0%
!! ATATATTCTAACATGTGATA+AGG - chr7_2:61126236-61126255 Msa1066980:three_prime_UTR 20.0%
!! TAATAAAAATGAGAACTGAA+AGG + chr7_2:61126271-61126290 None:intergenic 20.0%
!! TAATACAATTCATAAAATGC+TGG + chr7_2:61126479-61126498 None:intergenic 20.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG + chr7_2:61126836-61126855 None:intergenic 20.0%
!!! GATTTTGTAGTTTTTTTCTT+AGG + chr7_2:61126838-61126857 None:intergenic 20.0%
!!! TTTTATTTTTTTTTGGCCTT+GGG + chr7_2:61126897-61126916 None:intergenic 20.0%
!!! TTTTTATTTTTTTTTGGCCT+TGG + chr7_2:61126898-61126917 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG - chr7_2:61127020-61127039 Msa1066980:intron 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG - chr7_2:61127022-61127041 Msa1066980:intron 20.0%
!! CATTACTCTAATTAAAGTAA+AGG + chr7_2:61127097-61127116 None:intergenic 20.0%
!! TACAATCATATTTACAAATG+AGG + chr7_2:61127289-61127308 None:intergenic 20.0%
!! AAATGTATATCAGTTAAGAA+AGG - chr7_2:61127331-61127350 Msa1066980:intron 20.0%
!! ATATGAAATCAATTCTTGTT+AGG + chr7_2:61128165-61128184 None:intergenic 20.0%
!! ATAACATTGTTATGTTATGA+TGG - chr7_2:61128200-61128219 Msa1066980:intron 20.0%
!!! TTTTTTTCTTCTTAGATTCT+TGG - chr7_2:61128223-61128242 Msa1066980:intron 20.0%
!!! AGAATTATTTTGTGTTAAGA+GGG + chr7_2:61128747-61128766 None:intergenic 20.0%
!!! TAGAATTATTTTGTGTTAAG+AGG + chr7_2:61128748-61128767 None:intergenic 20.0%
!!! AATTCTAACTATTTGTTTTC+AGG - chr7_2:61128761-61128780 Msa1066980:intron 20.0%
!!! ATTCTAACTATTTGTTTTCA+GGG - chr7_2:61128762-61128781 Msa1066980:intron 20.0%
!! ACTATTCATGATATGTTAAA+TGG - chr7_2:61129063-61129082 Msa1066980:intron 20.0%
!! TTTGATAGAATTAATTTCCA+AGG + chr7_2:61129239-61129258 None:intergenic 20.0%
!! GAACATTTATTCTATTAACA+TGG - chr7_2:61129306-61129325 Msa1066980:CDS 20.0%
!! AAATGTATTATACAAAGCAT+AGG + chr7_2:61129361-61129380 None:intergenic 20.0%
!! TATTCTGCTCTTAATATATA+TGG - chr7_2:61129695-61129714 Msa1066980:intron 20.0%
!!! TTTTTTTTTTTTACAGGGAT+CGG - chr7_2:61129951-61129970 Msa1066980:intron 20.0%
!! CTTTGCAATTTATATATCAT+TGG - chr7_2:61130307-61130326 Msa1066980:intron 20.0%
!!! TATGGAATATATTTTCTACT+GGG - chr7_2:61130416-61130435 Msa1066980:intron 20.0%
!!! ATATATTTCAAGTTTGATTG+TGG + chr7_2:61130813-61130832 None:intergenic 20.0%
! CTTTCTTTGTAGTTTACTTT+AGG - chr7_2:61126762-61126781 Msa1066980:intron 25.0%
!!! TTTATTTTTTTTTGGCCTTG+GGG + chr7_2:61126896-61126915 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG - chr7_2:61127023-61127042 Msa1066980:intron 25.0%
!! CAAAGCATGGATATTATTTT+AGG - chr7_2:61127131-61127150 Msa1066980:CDS 25.0%
! AGGACTTGTATAAATTAGTT+TGG - chr7_2:61127151-61127170 Msa1066980:CDS 25.0%
!!! GGATCACTATATTTTAAACT+AGG - chr7_2:61127213-61127232 Msa1066980:intron 25.0%
! TTGTAGTAACTCTTTGATAT+TGG - chr7_2:61127304-61127323 Msa1066980:intron 25.0%
!! ATTGAACAAAGAGAAGTATA+CGG - chr7_2:61127440-61127459 Msa1066980:CDS 25.0%
! TCCTTCATATTGTAATATAC+AGG - chr7_2:61127996-61128015 Msa1066980:CDS 25.0%
! ACCTGTATATTACAATATGA+AGG + chr7_2:61128000-61128019 None:intergenic 25.0%
! AGAAAAAAGATGACTGAATT+AGG + chr7_2:61128086-61128105 None:intergenic 25.0%
!!! TAATTCAGTCATCTTTTTTC+TGG - chr7_2:61128085-61128104 Msa1066980:CDS 25.0%
!!! AATTCAGTCATCTTTTTTCT+GGG - chr7_2:61128086-61128105 Msa1066980:CDS 25.0%
! TAACATAACAATGTTATGCT+AGG + chr7_2:61128197-61128216 None:intergenic 25.0%
! TTCATAGCAAAACTGATAAT+TGG + chr7_2:61128481-61128500 None:intergenic 25.0%
!! AAGATAGTTTCTCTTTTGAA+TGG - chr7_2:61128569-61128588 Msa1066980:CDS 25.0%
! TAACATATAAATACAGCTTG+TGG + chr7_2:61128651-61128670 None:intergenic 25.0%
! GTAGATTTCATCGAAATTAA+GGG + chr7_2:61129015-61129034 None:intergenic 25.0%
! AGTAGATTTCATCGAAATTA+AGG + chr7_2:61129016-61129035 None:intergenic 25.0%
! ACATATCATGAATAGTGATA+TGG + chr7_2:61129059-61129078 None:intergenic 25.0%
! TTCATGATATGTTAAATGGA+AGG - chr7_2:61129067-61129086 Msa1066980:intron 25.0%
! TCATGATATGTTAAATGGAA+GGG - chr7_2:61129068-61129087 Msa1066980:intron 25.0%
! ATAACCTGATTATAGTAAGT+AGG + chr7_2:61129335-61129354 None:intergenic 25.0%
!!! AAATTAGCTTGTTGATTCAA+TGG + chr7_2:61129404-61129423 None:intergenic 25.0%
!!! AGCTAATTTGTCATTTTATC+AGG - chr7_2:61129415-61129434 Msa1066980:CDS 25.0%
! ATTTGTAATAGTTGTTGATC+TGG + chr7_2:61129613-61129632 None:intergenic 25.0%
! ATTTGAGGAATTCAAACTAA+AGG + chr7_2:61129857-61129876 None:intergenic 25.0%
!! AGTTTGAATTCCTCAAATTT+TGG - chr7_2:61129859-61129878 Msa1066980:intron 25.0%
! AAATTATGGTTTGAATTAGG+TGG + chr7_2:61129934-61129953 None:intergenic 25.0%
!! TATATGTGATTTTTCATTGC+AGG - chr7_2:61130337-61130356 Msa1066980:intron 25.0%
! TCTGTTGCATTATACATAAT+AGG - chr7_2:61130385-61130404 Msa1066980:intron 25.0%
!! GTATGGAATATATTTTCTAC+TGG - chr7_2:61130415-61130434 Msa1066980:intron 25.0%
!! ATGGAATATATTTTCTACTG+GGG - chr7_2:61130417-61130436 Msa1066980:intron 25.0%
! AAAGTGAGAAGTTAAAATCA+AGG + chr7_2:61130551-61130570 None:intergenic 25.0%
! CATTTCAAATCAGTATTAGA+TGG - chr7_2:61130662-61130681 Msa1066980:five_prime_UTR 25.0%
!!! AGAAAAGGTATTTGCAAAAA+GGG + chr7_2:61130732-61130751 None:intergenic 25.0%
!! TCAAATTTTATGTGCAGAAA+AGG + chr7_2:61130747-61130766 None:intergenic 25.0%
!! AATAGACAATGTTTTACATG+TGG + chr7_2:61130782-61130801 None:intergenic 25.0%
TATTATCAACATAGCACCAA+TGG - chr7_2:61126286-61126305 Msa1066980:three_prime_UTR 30.0%
ATTAAACCACTTATAGCCAT+TGG + chr7_2:61126305-61126324 None:intergenic 30.0%
TAGTGGAAAATTGAAAGTGA+TGG + chr7_2:61126374-61126393 None:intergenic 30.0%
! ATTTTCCCACAAACTTTTCA+TGG - chr7_2:61126619-61126638 Msa1066980:intron 30.0%
TCTTACCATGAAAAGTTTGT+GGG + chr7_2:61126627-61126646 None:intergenic 30.0%
TGCTACAAATGCAAAACTTA+GGG + chr7_2:61126864-61126883 None:intergenic 30.0%
! TTTTGCATTTGTAGCAGTTT+TGG - chr7_2:61126868-61126887 Msa1066980:intron 30.0%
!!! TTATTTTTTTTTGGCCTTGG+GGG + chr7_2:61126895-61126914 None:intergenic 30.0%
CCACATAAACCAAAATTAGA+GGG + chr7_2:61127195-61127214 None:intergenic 30.0%
TCCACATAAACCAAAATTAG+AGG + chr7_2:61127196-61127215 None:intergenic 30.0%
! ACTAGGCTTAAATGTAGTTT+TGG - chr7_2:61127230-61127249 Msa1066980:intron 30.0%
!!! GACTTCTACTTTTTGCAAAA+GGG + chr7_2:61127418-61127437 None:intergenic 30.0%
!!! TGACTTCTACTTTTTGCAAA+AGG + chr7_2:61127419-61127438 None:intergenic 30.0%
ATATGACATTGATGAAACGA+AGG - chr7_2:61127523-61127542 Msa1066980:intron 30.0%
! AGCTTTTCTTTTATGCAACA+TGG - chr7_2:61127670-61127689 Msa1066980:CDS 30.0%
CTATGTGTACAATGTATGTT+TGG - chr7_2:61127734-61127753 Msa1066980:CDS 30.0%
TGTACAATGTATGTTTGGAT+TGG - chr7_2:61127739-61127758 Msa1066980:CDS 30.0%
AAGATATATGACAGTGTGTT+TGG + chr7_2:61127885-61127904 None:intergenic 30.0%
! TACATTCGAAATTTGAGACA+TGG + chr7_2:61127916-61127935 None:intergenic 30.0%
!!! ATTCAGTCATCTTTTTTCTG+GGG - chr7_2:61128087-61128106 Msa1066980:CDS 30.0%
! TTTTCTTCTTAGATTCTTGG+TGG - chr7_2:61128226-61128245 Msa1066980:intron 30.0%
! TTAGATTCTTGGTGGTATAT+GGG - chr7_2:61128234-61128253 Msa1066980:intron 30.0%
TTTGCATAACACGAAAAAGA+TGG + chr7_2:61128457-61128476 None:intergenic 30.0%
AAGAGAAACTATCTTCGATT+TGG + chr7_2:61128564-61128583 None:intergenic 30.0%
TTAGTAAGCTATACTCTACA+CGG + chr7_2:61128610-61128629 None:intergenic 30.0%
CTTGGACAGTATATTATTCA+TGG + chr7_2:61128802-61128821 None:intergenic 30.0%
TGAATAATATACTGTCCAAG+TGG - chr7_2:61128802-61128821 Msa1066980:intron 30.0%
! CTTTTCTTATCCAAAACCTT+GGG - chr7_2:61128910-61128929 Msa1066980:intron 30.0%
!! ACTTACTTTTCTCAACCAAA+AGG + chr7_2:61128985-61129004 None:intergenic 30.0%
CATGATATGTTAAATGGAAG+GGG - chr7_2:61129069-61129088 Msa1066980:intron 30.0%
GACAATATTTCAGTAACAAG+TGG + chr7_2:61129587-61129606 None:intergenic 30.0%
!! CATAAAAGTGCCAAAATTTG+AGG + chr7_2:61129872-61129891 None:intergenic 30.0%
CATATGCAAACATGTTGTAT+TGG + chr7_2:61129895-61129914 None:intergenic 30.0%
TATTCCAATCATCAAGACAT+TGG - chr7_2:61129997-61130016 Msa1066980:intron 30.0%
! CTATGAAATTTTACTGGTCA+TGG + chr7_2:61130059-61130078 None:intergenic 30.0%
ATTATACATAATAGGCACAC+TGG - chr7_2:61130393-61130412 Msa1066980:intron 30.0%
! ATACATCCCTTGCTATATAT+AGG + chr7_2:61130489-61130508 None:intergenic 30.0%
! TTTGCATCTAAAGTAAGCAA+AGG - chr7_2:61130599-61130618 Msa1066980:CDS 30.0%
ATGTTCTTATAAACTGAGTG+TGG + chr7_2:61130705-61130724 None:intergenic 30.0%
!! AAAAGGTATTTGCAAAAAGG+GGG + chr7_2:61130730-61130749 None:intergenic 30.0%
!! GAAAAGGTATTTGCAAAAAG+GGG + chr7_2:61130731-61130750 None:intergenic 30.0%
!! CAGAAAAGGTATTTGCAAAA+AGG + chr7_2:61130733-61130752 None:intergenic 30.0%
TAATTTCAGACTGTCATGCA+TGG + chr7_2:61126200-61126219 None:intergenic 35.0%
TTCACTTCTTTCATTGCTTC+AGG - chr7_2:61126338-61126357 Msa1066980:three_prime_UTR 35.0%
TGGAAAATTGAAAGTGATGG+AGG + chr7_2:61126371-61126390 None:intergenic 35.0%
CTCTTACCATGAAAAGTTTG+TGG + chr7_2:61126628-61126647 None:intergenic 35.0%
! CACAAACTTTTCATGGTAAG+AGG - chr7_2:61126626-61126645 Msa1066980:intron 35.0%
TATTGCCACCATCCATAAAA+GGG + chr7_2:61126675-61126694 None:intergenic 35.0%
ATATTGCCACCATCCATAAA+AGG + chr7_2:61126676-61126695 None:intergenic 35.0%
TCGCAACTTCGTTAAAGTTA+GGG + chr7_2:61126807-61126826 None:intergenic 35.0%
ATCGCAACTTCGTTAAAGTT+AGG + chr7_2:61126808-61126827 None:intergenic 35.0%
! CTTTAACGAAGTTGCGATTT+TGG - chr7_2:61126810-61126829 Msa1066980:intron 35.0%
CTACAAATGCAAAACTTAGG+GGG + chr7_2:61126862-61126881 None:intergenic 35.0%
GCTACAAATGCAAAACTTAG+GGG + chr7_2:61126863-61126882 None:intergenic 35.0%
CTGCTACAAATGCAAAACTT+AGG + chr7_2:61126865-61126884 None:intergenic 35.0%
!!! TATTTTTTTTTGGCCTTGGG+GGG + chr7_2:61126894-61126913 None:intergenic 35.0%
CAAAATTAGAGGGTTTCAAG+AGG + chr7_2:61127185-61127204 None:intergenic 35.0%
! CTCTTGAAACCCTCTAATTT+TGG - chr7_2:61127183-61127202 Msa1066980:CDS 35.0%
!!! CCCTCTAATTTTGGTTTATG+TGG - chr7_2:61127192-61127211 Msa1066980:intron 35.0%
AGTAACTCTTTGATATTGGC+AGG - chr7_2:61127308-61127327 Msa1066980:intron 35.0%
AAGGATCTATCACTTCAAAG+AGG - chr7_2:61127350-61127369 Msa1066980:intron 35.0%
GCAATTCTATTGGAAGGAAA+TGG - chr7_2:61127581-61127600 Msa1066980:intron 35.0%
ACCAAGATAAGATACTCACA+CGG + chr7_2:61127697-61127716 None:intergenic 35.0%
!! ATGTATGTTTGGATTGGTGA+CGG - chr7_2:61127745-61127764 Msa1066980:CDS 35.0%
AGAATCACAGTGCAAAATCA+CGG + chr7_2:61127844-61127863 None:intergenic 35.0%
CAGTTAAACTCTTGTGACAT+TGG + chr7_2:61128045-61128064 None:intergenic 35.0%
CAATGTCACAAGAGTTTAAC+TGG - chr7_2:61128043-61128062 Msa1066980:CDS 35.0%
! CTTAGATTCTTGGTGGTATA+TGG - chr7_2:61128233-61128252 Msa1066980:intron 35.0%
CTTATTATGCGTGCCTTTAT+GGG - chr7_2:61128361-61128380 Msa1066980:intron 35.0%
GTTTCCAGTAACTAGTCATA+TGG - chr7_2:61128422-61128441 Msa1066980:intron 35.0%
! CTAACCATATGACTAGTTAC+TGG + chr7_2:61128429-61128448 None:intergenic 35.0%
GACAGTATATTATTCATGGC+GGG + chr7_2:61128798-61128817 None:intergenic 35.0%
GGACAGTATATTATTCATGG+CGG + chr7_2:61128799-61128818 None:intergenic 35.0%
TCACTTTCGCTAGTATATAG+CGG - chr7_2:61128849-61128868 Msa1066980:CDS 35.0%
!!! CCAAGGTTTTGGATAAGAAA+AGG + chr7_2:61128912-61128931 None:intergenic 35.0%
! CCTTTTCTTATCCAAAACCT+TGG - chr7_2:61128909-61128928 Msa1066980:intron 35.0%
CCAAATGAGTAAAACACTGA+TGG + chr7_2:61128939-61128958 None:intergenic 35.0%
! CCATCAGTGTTTTACTCATT+TGG - chr7_2:61128936-61128955 Msa1066980:intron 35.0%
! TTTTACTCATTTGGATCCCT+TGG - chr7_2:61128945-61128964 Msa1066980:intron 35.0%
TACTTGCCAAGAAAGAACAA+AGG + chr7_2:61129102-61129121 None:intergenic 35.0%
AGTAAACTCATTTCCTTTCC+AGG - chr7_2:61129118-61129137 Msa1066980:intron 35.0%
GAAAAAAAGCTCATCCTTGA+AGG - chr7_2:61129182-61129201 Msa1066980:intron 35.0%
CGTATCGAAAACATCTGTTT+CGG - chr7_2:61129208-61129227 Msa1066980:intron 35.0%
!! TTCTATCAAAAGCACCAGTT+TGG - chr7_2:61129249-61129268 Msa1066980:intron 35.0%
!! TCTATCAAAAGCACCAGTTT+GGG - chr7_2:61129250-61129269 Msa1066980:intron 35.0%
GAATAAATGTTCCCCAATTG+TGG + chr7_2:61129298-61129317 None:intergenic 35.0%
GATGCCTACTTACTATAATC+AGG - chr7_2:61129328-61129347 Msa1066980:CDS 35.0%
TTCCATAACAACTGTTCGAA+AGG - chr7_2:61129553-61129572 Msa1066980:CDS 35.0%
TACCTTTCGAACAGTTGTTA+TGG + chr7_2:61129558-61129577 None:intergenic 35.0%
TTAACAGAATGCCGTATAGA+AGG - chr7_2:61129640-61129659 Msa1066980:intron 35.0%
CCGAACAATTTCCTTCTATA+CGG + chr7_2:61129654-61129673 None:intergenic 35.0%
CCGTATAGAAGGAAATTGTT+CGG - chr7_2:61129651-61129670 Msa1066980:intron 35.0%
AAATTACTCACAGCATAACG+TGG + chr7_2:61130024-61130043 None:intergenic 35.0%
! CACGCACTATGAAATTTTAC+TGG + chr7_2:61130065-61130084 None:intergenic 35.0%
TTTCATAGTGCGTGAAATTC+TGG - chr7_2:61130071-61130090 Msa1066980:intron 35.0%
! CTGAGTGATGACTTGTATAA+TGG + chr7_2:61130105-61130124 None:intergenic 35.0%
ACTGGATACATACTTCAAAG+AGG - chr7_2:61130246-61130265 Msa1066980:intron 35.0%
AAATGAATGTGGAGAACTCT+CGG + chr7_2:61130273-61130292 None:intergenic 35.0%
AGAGTTCTCCACATTCATTT+CGG - chr7_2:61130273-61130292 Msa1066980:intron 35.0%
TGTAAACTCCGAAATGAATG+TGG + chr7_2:61130284-61130303 None:intergenic 35.0%
! GATTTTTCATTGCAGGTTCT+TGG - chr7_2:61130344-61130363 Msa1066980:intron 35.0%
TTCTTGGAATGACGTGTTTA+AGG - chr7_2:61130360-61130379 Msa1066980:intron 35.0%
! TGAAGAGTGTGATGATGTAA+AGG - chr7_2:61130454-61130473 Msa1066980:intron 35.0%
! TGATGATGTAAAGGAATGTG+TGG - chr7_2:61130463-61130482 Msa1066980:intron 35.0%
ATGTATAGAGAGAGATACCA+TGG - chr7_2:61130503-61130522 Msa1066980:intron 35.0%
!!! GTTTTTGGTGAAAACTTCCA+TGG + chr7_2:61130523-61130542 None:intergenic 35.0%
AGAAGTTAAAATCAAGGCCA+CGG + chr7_2:61130545-61130564 None:intergenic 35.0%
CTGCACATAAAATTTGACAC+AGG - chr7_2:61130750-61130769 Msa1066980:five_prime_UTR 35.0%
! GACAATGTTTTACATGTGGA+AGG + chr7_2:61130778-61130797 None:intergenic 35.0%
ATAGCACCAATGGCTATAAG+TGG - chr7_2:61126296-61126315 Msa1066980:three_prime_UTR 40.0%
GAAAGAAGTGAAGCTTCTGT+TGG + chr7_2:61126330-61126349 None:intergenic 40.0%
CATAAAAGGGTCATCAGCAT+TGG + chr7_2:61126662-61126681 None:intergenic 40.0%
! CAATGCTGATGACCCTTTTA+TGG - chr7_2:61126660-61126679 Msa1066980:intron 40.0%
GGTGGCAATATTTGTCTATG+TGG - chr7_2:61126685-61126704 Msa1066980:CDS 40.0%
GCAACTTCGTTAAAGTTAGG+GGG + chr7_2:61126805-61126824 None:intergenic 40.0%
CGCAACTTCGTTAAAGTTAG+GGG + chr7_2:61126806-61126825 None:intergenic 40.0%
! TTTTGCACTTGTGGCAGTTT+TGG + chr7_2:61126989-61127008 None:intergenic 40.0%
TGCCACAAGTGCAAAACTTA+GGG - chr7_2:61126993-61127012 Msa1066980:intron 40.0%
! CTTTCCCAAAGTTGCGATTT+TGG + chr7_2:61127049-61127068 None:intergenic 40.0%
! ATCGCAACTTTGGGAAAGTT+AGG - chr7_2:61127051-61127070 Msa1066980:intron 40.0%
! TCGCAACTTTGGGAAAGTTA+GGG - chr7_2:61127052-61127071 Msa1066980:intron 40.0%
ATCGCGAATCGGTGAAAATA+GGG + chr7_2:61127258-61127277 None:intergenic 40.0%
AATCGCGAATCGGTGAAAAT+AGG + chr7_2:61127259-61127278 None:intergenic 40.0%
AGGCAACTAAAATCGCGAAT+CGG + chr7_2:61127269-61127288 None:intergenic 40.0%
!!! AGCGTTTTTAGTGTTCAGTC+TGG - chr7_2:61127374-61127393 Msa1066980:CDS 40.0%
!!! GTTTTTAGTGTTCAGTCTGG+TGG - chr7_2:61127377-61127396 Msa1066980:CDS 40.0%
! CAAAGAGAAGTATACGGACT+AGG - chr7_2:61127446-61127465 Msa1066980:CDS 40.0%
AACAGGCGAAGCAATTCTAT+TGG - chr7_2:61127571-61127590 Msa1066980:intron 40.0%
ACCGTGTGAGTATCTTATCT+TGG - chr7_2:61127693-61127712 Msa1066980:CDS 40.0%
! TGACAGTGTGTTTGGATTAG+CGG + chr7_2:61127877-61127896 None:intergenic 40.0%
TTACTCAGGTGTGATTGCTA+TGG - chr7_2:61128118-61128137 Msa1066980:CDS 40.0%
TACTCAGGTGTGATTGCTAT+GGG - chr7_2:61128119-61128138 Msa1066980:CDS 40.0%
! TGCTAGGATTTGGAGTTGTA+TGG - chr7_2:61128281-61128300 Msa1066980:intron 40.0%
! TAGGATTTGGAGTTGTATGG+TGG - chr7_2:61128284-61128303 Msa1066980:intron 40.0%
ACACCTATTGCTGCAAGAAT+TGG - chr7_2:61128325-61128344 Msa1066980:intron 40.0%
CACCTATTGCTGCAAGAATT+GGG - chr7_2:61128326-61128345 Msa1066980:intron 40.0%
GCACGCATAATAAGCAAACA+AGG + chr7_2:61128355-61128374 None:intergenic 40.0%
GCTTATTATGCGTGCCTTTA+TGG - chr7_2:61128360-61128379 Msa1066980:intron 40.0%
!! TATATTATTCATGGCGGGCA+TGG + chr7_2:61128793-61128812 None:intergenic 40.0%
TTCTTATCCAAAACCTTGGG+TGG - chr7_2:61128913-61128932 Msa1066980:intron 40.0%
ACTCCTCCTTTGTTCTTTCT+TGG - chr7_2:61129093-61129112 Msa1066980:intron 40.0%
TTGCCAAGAAAGAACAAAGG+AGG + chr7_2:61129099-61129118 None:intergenic 40.0%
AAAAAGCTCATCCTTGAAGG+CGG - chr7_2:61129185-61129204 Msa1066980:intron 40.0%
GAGATTATAAGAGCCCAAAC+TGG + chr7_2:61129266-61129285 None:intergenic 40.0%
TCTCTCATTTCTGCCACAAT+TGG - chr7_2:61129282-61129301 Msa1066980:CDS 40.0%
CTCTCATTTCTGCCACAATT+GGG - chr7_2:61129283-61129302 Msa1066980:CDS 40.0%
TCTCATTTCTGCCACAATTG+GGG - chr7_2:61129284-61129303 Msa1066980:CDS 40.0%
AAGTTCAACCTCACTGAATC+TGG - chr7_2:61129443-61129462 Msa1066980:CDS 40.0%
AGTTCAACCTCACTGAATCT+GGG - chr7_2:61129444-61129463 Msa1066980:CDS 40.0%
TGTTCTTCCATGGTTAACCA+TGG - chr7_2:61129475-61129494 Msa1066980:CDS 40.0%
AATATTTGCAAACACGGCCA+TGG + chr7_2:61129495-61129514 None:intergenic 40.0%
ATGGCCGTGTTTGCAAATAT+TGG - chr7_2:61129494-61129513 Msa1066980:CDS 40.0%
CCCTCCAATATTTGCAAACA+CGG + chr7_2:61129501-61129520 None:intergenic 40.0%
CCGTGTTTGCAAATATTGGA+GGG - chr7_2:61129498-61129517 Msa1066980:CDS 40.0%
TGTTTGCAAATATTGGAGGG+TGG - chr7_2:61129501-61129520 Msa1066980:CDS 40.0%
ACCTTTGCTAACTAACGTGT+CGG + chr7_2:61129531-61129550 None:intergenic 40.0%
TGGCAGATCATGCAATCAAT+CGG - chr7_2:61129724-61129743 Msa1066980:intron 40.0%
ATGCAATCAATCGGGTTTCT+AGG - chr7_2:61129733-61129752 Msa1066980:intron 40.0%
AGTTGCGTAAGAAAAAAGGC+AGG + chr7_2:61129760-61129779 None:intergenic 40.0%
GCTCAGTTGCGTAAGAAAAA+AGG + chr7_2:61129764-61129783 None:intergenic 40.0%
GAATTAGGTGGCTGCATATA+TGG + chr7_2:61129922-61129941 None:intergenic 40.0%
ATAAAGACCAGACTGTGAGA+AGG + chr7_2:61129980-61129999 None:intergenic 40.0%
! TGGTCCAATGTCTTGATGAT+TGG + chr7_2:61130004-61130023 None:intergenic 40.0%
TGCTCACGAGTTTCAATTTC+AGG - chr7_2:61130161-61130180 Msa1066980:intron 40.0%
GCTCACGAGTTTCAATTTCA+GGG - chr7_2:61130162-61130181 Msa1066980:intron 40.0%
ACATAATAGGCACACTGGTA+TGG - chr7_2:61130398-61130417 Msa1066980:intron 40.0%
TGTGTGGCCTATATATAGCA+AGG - chr7_2:61130479-61130498 Msa1066980:intron 40.0%
GTGTGGCCTATATATAGCAA+GGG - chr7_2:61130480-61130499 Msa1066980:intron 40.0%
! GAAGTTTTCACCAAAAACCG+TGG - chr7_2:61130525-61130544 Msa1066980:intron 40.0%
! AAAATCAAGGCCACGGTTTT+TGG + chr7_2:61130538-61130557 None:intergenic 40.0%
TAGATGCAAACTCACTTCAG+AGG + chr7_2:61130589-61130608 None:intergenic 40.0%
TGAGAACTGAAAGGTGAGAG+TGG + chr7_2:61126262-61126281 None:intergenic 45.0%
! GCTGATGACCCTTTTATGGA+TGG - chr7_2:61126664-61126683 Msa1066980:intron 45.0%
! GATGACCCTTTTATGGATGG+TGG - chr7_2:61126667-61126686 Msa1066980:CDS 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - chr7_2:61126954-61126973 Msa1066980:intron 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG - chr7_2:61126961-61126980 Msa1066980:intron 45.0%
CTGCCACAAGTGCAAAACTT+AGG - chr7_2:61126992-61127011 Msa1066980:intron 45.0%
GCCACAAGTGCAAAACTTAG+GGG - chr7_2:61126994-61127013 Msa1066980:intron 45.0%
CCACAAGTGCAAAACTTAGG+GGG - chr7_2:61126995-61127014 Msa1066980:intron 45.0%
! CGCAACTTTGGGAAAGTTAG+GGG - chr7_2:61127053-61127072 Msa1066980:intron 45.0%
! GCAACTTTGGGAAAGTTAGG+GGG - chr7_2:61127054-61127073 Msa1066980:intron 45.0%
TGCTGATGTTCAGCAAAGCA+TGG - chr7_2:61127118-61127137 Msa1066980:CDS 45.0%
TCGCGAATCGGTGAAAATAG+GGG + chr7_2:61127257-61127276 None:intergenic 45.0%
CAAAAGGGTTACTCGCAATC+TGG + chr7_2:61127403-61127422 None:intergenic 45.0%
TGAAACGAAGGTAGATCCTG+TGG - chr7_2:61127535-61127554 Msa1066980:intron 45.0%
GGCGAAGCAATTCTATTGGA+AGG - chr7_2:61127575-61127594 Msa1066980:intron 45.0%
ATTGGAAGGAAATGGTTCGC+TGG - chr7_2:61127589-61127608 Msa1066980:CDS 45.0%
ATTACGATAAGCCAGCGCTT+AGG + chr7_2:61127638-61127657 None:intergenic 45.0%
AATCACACAGCACATGCATC+AGG + chr7_2:61127788-61127807 None:intergenic 45.0%
AACTGGAACAGTGCAACAGT+TGG - chr7_2:61128060-61128079 Msa1066980:CDS 45.0%
GGTATATGGGCAGACAAACT+TGG - chr7_2:61128247-61128266 Msa1066980:intron 45.0%
ATATGGGCAGACAAACTTGG+TGG - chr7_2:61128250-61128269 Msa1066980:intron 45.0%
TATGGGCAGACAAACTTGGT+GGG - chr7_2:61128251-61128270 Msa1066980:intron 45.0%
TGGAGTTGTATGGTGGTCAA+TGG - chr7_2:61128291-61128310 Msa1066980:intron 45.0%
AGCCCAATTCTTGCAGCAAT+AGG + chr7_2:61128331-61128350 None:intergenic 45.0%
ATGCGTGCCTTTATGGGAAT+CGG - chr7_2:61128367-61128386 Msa1066980:intron 45.0%
!! AACCTCACCGATTCCCATAA+AGG + chr7_2:61128377-61128396 None:intergenic 45.0%
TTTATGGGAATCGGTGAGGT+TGG - chr7_2:61128376-61128395 Msa1066980:intron 45.0%
! GTCCAAGTGGATTCCAGTTT+CGG - chr7_2:61128815-61128834 Msa1066980:CDS 45.0%
GTATATAGCGGCATGTACCT+TGG - chr7_2:61128861-61128880 Msa1066980:CDS 45.0%
!! ATGTACCTTGGTTCTGTGGT+AGG - chr7_2:61128873-61128892 Msa1066980:CDS 45.0%
!! GAAGCATCTGGTTTGCCTTT+TGG - chr7_2:61128967-61128986 Msa1066980:intron 45.0%
! CTTTTGGTGAGCTATATGCC+TGG + chr7_2:61129139-61129158 None:intergenic 45.0%
TAGCTCACCAAAAGATGACC+CGG - chr7_2:61129145-61129164 Msa1066980:intron 45.0%
CATCTGTTTCGGACATTCCT+TGG - chr7_2:61129219-61129238 Msa1066980:intron 45.0%
ATAAGAGCCCAGATTCAGTG+AGG + chr7_2:61129454-61129473 None:intergenic 45.0%
GGCTCTTATGTGTTCTTCCA+TGG - chr7_2:61129465-61129484 Msa1066980:CDS 45.0%
GCCGTGTTTGCAAATATTGG+AGG - chr7_2:61129497-61129516 Msa1066980:CDS 45.0%
GGCAGATCATGCAATCAATC+GGG - chr7_2:61129725-61129744 Msa1066980:intron 45.0%
TCAATTTCAGGGCGTATTGC+TGG - chr7_2:61130173-61130192 Msa1066980:intron 45.0%
CAATTTCAGGGCGTATTGCT+GGG - chr7_2:61130174-61130193 Msa1066980:intron 45.0%
TAACACGTGGCACCTCACTT+AGG - chr7_2:61126921-61126940 Msa1066980:CDS 50.0%
AACACGTGGCACCTCACTTA+GGG - chr7_2:61126922-61126941 Msa1066980:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG - chr7_2:61126960-61126979 Msa1066980:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG + chr7_2:61126965-61126984 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG - chr7_2:61126962-61126981 Msa1066980:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG - chr7_2:61126963-61126982 Msa1066980:intron 50.0%
! CCCCCTAAGTTTTGCACTTG+TGG + chr7_2:61126998-61127017 None:intergenic 50.0%
CAAGTGCAAAACTTAGGGGG+CGG - chr7_2:61126998-61127017 Msa1066980:intron 50.0%
GGGGCCAAAATCGCAACTTT+GGG - chr7_2:61127042-61127061 Msa1066980:intron 50.0%
GATCCTGTGGCATCTGATGA+AGG - chr7_2:61127548-61127567 Msa1066980:intron 50.0%
GTTCCTTCATCAGATGCCAC+AGG + chr7_2:61127554-61127573 None:intergenic 50.0%
GTGGCATCTGATGAAGGAAC+AGG - chr7_2:61127554-61127573 Msa1066980:intron 50.0%
ATGGTTCGCTGGTATCTCCT+TGG - chr7_2:61127600-61127619 Msa1066980:CDS 50.0%
TTAGGAAGTTGCTGCCACCA+AGG + chr7_2:61127620-61127639 None:intergenic 50.0%
CTGGGGCTATCTACTTACTC+AGG - chr7_2:61128104-61128123 Msa1066980:CDS 50.0%
TGCCTTTATGGGAATCGGTG+AGG - chr7_2:61128372-61128391 Msa1066980:intron 50.0%
CTCCGAAACTGGAATCCACT+TGG + chr7_2:61128820-61128839 None:intergenic 50.0%
GATCTGCTTCTCTCCGAAAC+TGG + chr7_2:61128831-61128850 None:intergenic 50.0%
AAAACACTGATGGCCACCCA+AGG + chr7_2:61128929-61128948 None:intergenic 50.0%
!! TTGGATCCCTTGGAAGCATC+TGG - chr7_2:61128955-61128974 Msa1066980:intron 50.0%
GGCAAACCAGATGCTTCCAA+GGG + chr7_2:61128964-61128983 None:intergenic 50.0%
AGGCAAACCAGATGCTTCCA+AGG + chr7_2:61128965-61128984 None:intergenic 50.0%
GGTGAGCTATATGCCTGGAA+AGG + chr7_2:61129134-61129153 None:intergenic 50.0%
CCAAAAGATGACCCGGATCT+CGG - chr7_2:61129152-61129171 Msa1066980:intron 50.0%
CAAAAGATGACCCGGATCTC+GGG - chr7_2:61129153-61129172 Msa1066980:intron 50.0%
AAAAGATGACCCGGATCTCG+GGG - chr7_2:61129154-61129173 Msa1066980:intron 50.0%
! TTTTCCTCTACCCCGAGATC+CGG + chr7_2:61129167-61129186 None:intergenic 50.0%
! TTTTCGATACGCCGCCTTCA+AGG + chr7_2:61129199-61129218 None:intergenic 50.0%
AACACGGCCATGGTTAACCA+TGG + chr7_2:61129485-61129504 None:intergenic 50.0%
GCCGACACGTTAGTTAGCAA+AGG - chr7_2:61129527-61129546 Msa1066980:CDS 50.0%
ATGCACAATACTGCCATGGC+GGG + chr7_2:61129799-61129818 None:intergenic 50.0%
CATGCACAATACTGCCATGG+CGG + chr7_2:61129800-61129819 None:intergenic 50.0%
TGCCATGCACAATACTGCCA+TGG + chr7_2:61129803-61129822 None:intergenic 50.0%
ATTGTGCATGGCATGCAGTC+AGG - chr7_2:61129810-61129829 Msa1066980:intron 50.0%
CTGGGACTATCGAATACAGC+AGG - chr7_2:61130192-61130211 Msa1066980:intron 50.0%
AATACAGCAGGTGTGCTTGC+TGG - chr7_2:61130204-61130223 Msa1066980:intron 50.0%
GGGGGCCAAAATCGCAACTT+TGG - chr7_2:61127041-61127060 Msa1066980:intron 55.0%
GTTCGCTGGTATCTCCTTGG+TGG - chr7_2:61127603-61127622 Msa1066980:CDS 55.0%
! GGCAGACAAACTTGGTGGGA+AGG - chr7_2:61128255-61128274 Msa1066980:intron 55.0%
GGGAAGGTCGTGCTAGGATT+TGG - chr7_2:61128271-61128290 Msa1066980:intron 55.0%
!! CGGCATGTACCTTGGTTCTG+TGG - chr7_2:61128869-61128888 Msa1066980:CDS 55.0%
CCAAGCCTACCACAGAACCA+AGG + chr7_2:61128881-61128900 None:intergenic 55.0%
!! CCTTGGTTCTGTGGTAGGCT+TGG - chr7_2:61128878-61128897 Msa1066980:CDS 55.0%
! CTGATGGCCACCCAAGGTTT+TGG + chr7_2:61128923-61128942 None:intergenic 55.0%
! CCGAGATCCGGGTCATCTTT+TGG + chr7_2:61129155-61129174 None:intergenic 55.0%
TTTCCTCTACCCCGAGATCC+GGG + chr7_2:61129166-61129185 None:intergenic 55.0%
!!! CCATGGCGGGTGTTTTGACA+TGG + chr7_2:61129786-61129805 None:intergenic 55.0%
CCATGTCAAAACACCCGCCA+TGG - chr7_2:61129783-61129802 Msa1066980:intron 55.0%
CGCCATGGCAGTATTGTGCA+TGG - chr7_2:61129798-61129817 Msa1066980:intron 55.0%
TCGGATGCCTTCTCACAGTC+TGG - chr7_2:61129970-61129989 Msa1066980:intron 55.0%
GTCTTTGGCACAGCTGCAAC+TGG - chr7_2:61130228-61130247 Msa1066980:intron 55.0%
!! GTAGCAGTTTTGGCCCCCCA+AGG - chr7_2:61126878-61126897 Msa1066980:intron 60.0%
CTGACGTGGCACCCTAAGTG+AGG + chr7_2:61126936-61126955 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG + chr7_2:61126950-61126969 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG + chr7_2:61126980-61126999 None:intergenic 60.0%
GGCAGCAACTTCCTAAGCGC+TGG - chr7_2:61127624-61127643 Msa1066980:CDS 60.0%
CTTGGTGGGAAGGTCGTGCT+AGG - chr7_2:61128265-61128284 Msa1066980:intron 60.0%
! GGTGTGCTTGCTGGCGTCTT+TGG - chr7_2:61130213-61130232 Msa1066980:intron 60.0%
TGACCCGGATCTCGGGGTAG+AGG - chr7_2:61129160-61129179 Msa1066980:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 61126091 61130842 61126091 ID=Msa1066980;Name=Msa1066980
chr7_2 mRNA 61126091 61130842 61126091 ID=Msa1066980-mRNA-1;Parent=Msa1066980;Name=Msa1066980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=214|0.8|0.81|1|1|1|11|386|526
chr7_2 exon 61126091 61126574 61126091 ID=Msa1066980-mRNA-1:exon:12265;Parent=Msa1066980-mRNA-1
chr7_2 exon 61126666 61126774 61126666 ID=Msa1066980-mRNA-1:exon:12264;Parent=Msa1066980-mRNA-1
chr7_2 exon 61126901 61126966 61126901 ID=Msa1066980-mRNA-1:exon:12263;Parent=Msa1066980-mRNA-1
chr7_2 exon 61127102 61127203 61127102 ID=Msa1066980-mRNA-1:exon:12262;Parent=Msa1066980-mRNA-1
chr7_2 exon 61127359 61127496 61127359 ID=Msa1066980-mRNA-1:exon:12261;Parent=Msa1066980-mRNA-1
chr7_2 exon 61127584 61127793 61127584 ID=Msa1066980-mRNA-1:exon:12260;Parent=Msa1066980-mRNA-1
chr7_2 exon 61127935 61128150 61127935 ID=Msa1066980-mRNA-1:exon:12259;Parent=Msa1066980-mRNA-1
chr7_2 exon 61128540 61128695 61128540 ID=Msa1066980-mRNA-1:exon:12258;Parent=Msa1066980-mRNA-1
chr7_2 exon 61128808 61128915 61128808 ID=Msa1066980-mRNA-1:exon:12257;Parent=Msa1066980-mRNA-1
chr7_2 exon 61129281 61129603 61129281 ID=Msa1066980-mRNA-1:exon:12256;Parent=Msa1066980-mRNA-1
chr7_2 exon 61130574 61130842 61130574 ID=Msa1066980-mRNA-1:exon:12255;Parent=Msa1066980-mRNA-1
chr7_2 five_prime_UTR 61130629 61130842 61130629 ID=Msa1066980-mRNA-1:five_prime_utr;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61130574 61130628 61130574 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61129281 61129603 61129281 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61128808 61128915 61128808 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61128540 61128695 61128540 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61127935 61128150 61127935 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61127584 61127793 61127584 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61127359 61127496 61127359 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61127102 61127203 61127102 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61126901 61126966 61126901 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61126666 61126774 61126666 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 CDS 61126477 61126574 61126477 ID=Msa1066980-mRNA-1:cds;Parent=Msa1066980-mRNA-1
chr7_2 three_prime_UTR 61126091 61126476 61126091 ID=Msa1066980-mRNA-1:three_prime_utr;Parent=Msa1066980-mRNA-1
Gene Sequence

>Msa1066980

ATGGCTATAAGTGGTTTAATTTCCAACAGAAGCTTCACTTCTTTCATTGCTTCAGGAAATGTATATCAGTTAAGAAAGGATCTATCACTTCAAAGAGGAAGCGTTTTTAGTGTTCAGTCTGGTGGCCAGATTGCGAGTAACCCTTTTGCAAAAAGTAGAAGTCATATTGAACAAAGAGAAGTATACGGACTAGGAGTAAGAAAGCTCAGTAAGATAAATAAAGTCTGTGTTCATTACAGTTCAGAAGAATATGACATTGATGAAACGAAGGTAGATCCTGTGGCATCTGATGAAGGAACAGGCGAAGCAATTCTATTGGAAGGAAATGGTTCGCTGGTATCTCCTTGGTGGCAGCAACTTCCTAAGCGCTGGCTTATCGTAAATATGAGCATTGCGATACTTCCAATGTCACAAGAGTTTAACTGGAACAGTGCAACAGTTGGCCTAATTCAGTCATCTTTTTTCTGGGGCTATCTACTTACTCAGATTCTTGGTGGTATATGGGCAGACAAACTTGGTGGGAAGGTCGTGCTAGGATTTGGAGTTGTATGGTGGTCAATGGCAACAATTCTAACACCTATTGCTGCAAGAATTGGGCTACCTTGTTTGCTTATTATGCGTGCCTTTATGGGAATCGGTGAGGGTGTAGCCATGCCCGCCATGAATAATATACTGTCCAAGTGGATTCCAGTTTCGGAGAGAAGCAGATCACTTTCGCTAGTATATAGCGGCATGTACCTTGGTTCTGTGGTAGGCTTGGCATTCTCACCTTTTCTTATCCAAAACCTTGGGTGGCCATCAGTGTTTTACTCATTTGGATCCCTTGGAAGCATCTGGTTTGCCTTTTGGTTGAGAAAAGCATATAGCTCACCAAAAGATGACCCGGATCTCGGGGTAGAGGAAAAAAAGCTCATCCTTGAAGGCGGCGTATCGAAAACATCTGTTTCGGACATTCCTTGGAAATTAATTCTATCAAAAGCACCAGTTTGGGCTCTTATAATCTCTCATTTCTGCCACAATTGGGGAACATTTATTCTATTAACATGGATGCCTACTTACTATAATCAGGTTCTGAAGTTCAACCTCACTGAATCTGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCCGTGTTTGCAAATATTGGAGGGTGGATAGCCGACACGTTAGTTAGCAAAGGTGTTTCCATAACAACTGTTCGAAAGATCATGCAATCAATCGGGTTTCTAGGTCCTGCCTTTTTTCTTACGCAACTGAGCCATGTCAAAACACCCGCCATGGCAGTATTGTGCATGGCATGCAGTCAGGGATCGGATGCCTTCTCACAGTCTGGTCTTTATTCCAATCATCAAGACATTGGACCACGTTATGCTAATGCTCACGAGTTTCAATTTCAGGGCGTATTGCTGGGACTATCGAATACAGCAGGTGTGCTTGCTGGCGTCTTTGGCACAGCTGCAACTGGATACATACTTCAAAGAGGTTCTTGGAATGACGTGTTTAAGGTTTCTGTTGCATTATACATAATAGGCACACTGGTATGGAATATATTTTCTACTGGGGAGAAGATTCTTGACTGA

Protein sequence

>Msa1066980

MAISGLISNRSFTSFIASGNVYQLRKDLSLQRGSVFSVQSGGQIASNPFAKSRSHIEQREVYGLGVRKLSKINKVCVHYSSEEYDIDETKVDPVASDEGTGEAILLEGNGSLVSPWWQQLPKRWLIVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKVVLGFGVVWWSMATILTPIAARIGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLSLVYSGMYLGSVVGLAFSPFLIQNLGWPSVFYSFGSLGSIWFAFWLRKAYSSPKDDPDLGVEEKKLILEGGVSKTSVSDIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSKGVSITTVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYANAHEFQFQGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVALYIIGTLVWNIFSTGEKILD*