AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030760 MtrunA17_Chr1g0188361 96.212 396 8 3 1 395 1 390 0.0 763
Msa0030760 MtrunA17_Chr5g0423381 34.967 306 168 9 86 385 50 330 1.04e-52 179
Msa0030760 MtrunA17_Chr8g0372991 36.313 358 189 13 47 395 38 365 3.11e-51 176
Msa0030760 MtrunA17_Chr4g0018641 31.190 311 172 12 89 392 398 673 4.21e-25 107
Msa0030760 MtrunA17_Chr3g0090521 24.507 355 200 13 84 395 121 450 6.45e-22 97.4
Msa0030760 MtrunA17_Chr4g0003831 25.256 293 175 10 124 395 373 642 6.19e-16 79.7
Msa0030760 MtrunA17_Chr2g0332311 24.573 293 179 9 123 395 376 646 1.40e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030760 AT5G38520.1 68.788 330 93 3 68 395 38 359 1.15e-158 451
Msa0030760 AT5G38520.2 67.560 336 99 3 68 395 38 371 5.60e-158 449
Msa0030760 AT5G19850.1 34.118 340 185 10 57 385 38 349 8.56e-55 185
Msa0030760 AT4G36530.1 33.333 342 176 14 67 393 2 306 3.57e-46 161
Msa0030760 AT4G36530.2 31.662 379 201 16 30 393 28 363 1.33e-45 161
Msa0030760 AT5G13800.2 25.542 415 220 16 44 395 26 414 9.66e-22 97.1
Msa0030760 AT5G13800.1 25.542 415 220 16 44 395 26 414 9.66e-22 97.1
Msa0030760 AT5G13800.3 25.542 415 220 16 44 395 49 437 1.23e-21 97.1
Msa0030760 AT5G13800.4 25.558 403 211 16 44 383 26 402 1.53e-20 93.2
Msa0030760 AT4G25290.1 28.182 330 177 12 81 395 386 670 4.09e-20 92.8
Msa0030760 AT4G12830.1 36.441 118 65 3 112 226 125 235 4.58e-14 73.6
Msa0030760 AT1G80280.1 24.742 291 179 10 123 395 374 642 7.59e-14 73.6

Find 102 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTGATACAACGTATT+TGG 0.096787 1_1:+57215989 None:intergenic
GCTATTGATCTTCTTGGTTT+TGG 0.163333 1_1:-57217563 Msa0030760:CDS
TAAAGAAACAAAATAATTTA+TGG 0.207219 1_1:+57218378 None:intergenic
GTTTATGCTATTGATCTTCT+TGG 0.221335 1_1:-57217569 Msa0030760:CDS
ACAGTTGATCTTGGATTTCT+TGG 0.227874 1_1:-57217232 Msa0030760:intron
CACCAATTACAAACTATAAA+AGG 0.236377 1_1:+57216187 None:intergenic
TGTTTCTACCACCATTGTTT+TGG 0.239122 1_1:+57218530 None:intergenic
TGTCTCATTGCTGCTGCTTC+AGG 0.241897 1_1:-57217153 Msa0030760:CDS
TCTCCCCATAAAAGTAAAAT+AGG 0.274171 1_1:+57216418 None:intergenic
GCATTTGTATCAATTGTAAC+AGG 0.286676 1_1:-57216487 Msa0030760:CDS
CTGTTACTTGTCCATGGCTT+TGG 0.291905 1_1:-57218316 Msa0030760:CDS
CTTCTTGATACAACGTATTT+GGG 0.312055 1_1:+57215990 None:intergenic
AAGGTTACGTTCAGAGTTCT+TGG 0.313499 1_1:-57216059 Msa0030760:three_prime_UTR
AATTGATACAAATGCATCTA+AGG 0.330008 1_1:+57216495 None:intergenic
TTGCAGAAGCAATTCCCTTT+TGG 0.333173 1_1:+57216899 None:intergenic
GAGTTCAGTGTATGGAAATA+AGG 0.338288 1_1:-57216757 Msa0030760:CDS
ATTTACACCACCATGTCTAT+TGG 0.339060 1_1:-57216090 Msa0030760:three_prime_UTR
ACAAAGCAATTGTTGATGAT+TGG 0.341853 1_1:-57216972 Msa0030760:CDS
TCAATACAAACAGTTGATCT+TGG 0.347401 1_1:-57217241 Msa0030760:intron
AGTTACTCCTTCCCTTGCTT+TGG 0.349148 1_1:-57216942 Msa0030760:CDS
AAGTAACAGAGGAGGGTTAT+TGG 0.354968 1_1:+57218330 None:intergenic
GGCACCAATTGCACCGGATT+AGG 0.359450 1_1:+57216454 None:intergenic
GATCCCTTTACTCCAATTGA+TGG 0.363586 1_1:-57216391 Msa0030760:CDS
TCAAGTGAAACTCTAGTTAG+AGG 0.364835 1_1:-57217030 Msa0030760:CDS
TAATGATCCTGAAGTTTCTA+TGG 0.365035 1_1:+57218459 None:intergenic
CAGAAGCCAACAGTACTAAT+AGG 0.371016 1_1:-57217198 Msa0030760:CDS
GACACTGTCTGAGAATTATA+CGG 0.378882 1_1:-57217591 Msa0030760:CDS
ACTAGAGTTTCACTTGAATC+TGG 0.383055 1_1:+57217036 None:intergenic
TTTGGTTCCTCAGATCATTA+GGG 0.394374 1_1:-57216539 Msa0030760:intron
ACGAGTGCTGTTCATTCAGT+TGG 0.400022 1_1:-57218673 Msa0030760:CDS
ATTGTGCTATTAAATTGTTC+TGG 0.404463 1_1:-57217006 Msa0030760:CDS
GCTGCTTCCATAGAAACTTC+AGG 0.412435 1_1:-57218466 Msa0030760:CDS
GGTCCATCAATTGGAGTAAA+GGG 0.415428 1_1:+57216388 None:intergenic
GTTCAACTGTTCATGCTTGA+AGG 0.416044 1_1:-57216322 Msa0030760:CDS
CAATGAAGAAGAGTGTTCTT+TGG 0.417111 1_1:+57218580 None:intergenic
GGGGCCTAATCCGGTGCAAT+TGG 0.425981 1_1:-57216458 Msa0030760:CDS
AGGGCCGCCGGGGCCTAATC+CGG 0.428980 1_1:-57216467 Msa0030760:CDS
TCCTCAGATCATTAGGGAAC+CGG 0.429301 1_1:-57216533 Msa0030760:intron
TTTCCAACAGGTCCATCAAT+TGG 0.431388 1_1:+57216379 None:intergenic
TTAAATGCAGAGAGAATTTG+AGG 0.438567 1_1:-57216788 Msa0030760:intron
GAAAGGTTCAACAGCATCAA+TGG 0.438799 1_1:-57218634 Msa0030760:CDS
GAAGAAAAGTACTTTCCAAC+AGG 0.449114 1_1:+57216367 None:intergenic
CGAGTGCTGTTCATTCAGTT+GGG 0.450183 1_1:-57218672 Msa0030760:CDS
ACAGACATCGTAGAAAGAAA+TGG 0.455043 1_1:-57218701 None:intergenic
TTGGTGCTTCCATTCCTCAC+TGG 0.462114 1_1:-57218297 Msa0030760:CDS
TAAAGCAGAAATGTCTTAAG+TGG 0.464903 1_1:-57218420 Msa0030760:CDS
CCTCCTCTGTTACTTGTCCA+TGG 0.474310 1_1:-57218322 Msa0030760:CDS
AGGTTACGTTCAGAGTTCTT+GGG 0.478184 1_1:-57216058 Msa0030760:three_prime_UTR
AAGAGTGTTCTTTGGTGTAG+TGG 0.482090 1_1:+57218588 None:intergenic
AGGTCCATCAATTGGAGTAA+AGG 0.483632 1_1:+57216387 None:intergenic
GACATTGTCCCCATGATGAC+AGG 0.489475 1_1:-57216294 Msa0030760:CDS
TCAATTGTAACAGGGCCGCC+GGG 0.490938 1_1:-57216478 Msa0030760:CDS
ACTCCAATTGATGGACCTGT+TGG 0.491390 1_1:-57216382 Msa0030760:CDS
TTCAACTGTTCATGCTTGAA+GGG 0.491418 1_1:-57216321 Msa0030760:CDS
GAGTTTCCTATTAGTACTGT+TGG 0.496781 1_1:+57217192 None:intergenic
ATCAATTGTAACAGGGCCGC+CGG 0.498322 1_1:-57216479 Msa0030760:CDS
GTACTAATAGGAAACTCTGT+TGG 0.499809 1_1:-57217186 Msa0030760:CDS
CTAATTCAGGCCTGTCATCA+TGG 0.500280 1_1:+57216284 None:intergenic
TTTCGTATACCATGGAAACA+TGG 0.503219 1_1:-57217517 Msa0030760:CDS
CTGTTCATGCTTGAAGGGGT+TGG 0.503540 1_1:-57216316 Msa0030760:CDS
ATGTCTATTGGAAGGAAGAA+AGG 0.507439 1_1:-57216078 Msa0030760:three_prime_UTR
AACATCTTGAGTTCAGTGTA+TGG 0.513396 1_1:-57216765 Msa0030760:CDS
TAATTCAGGCCTGTCATCAT+GGG 0.516079 1_1:+57216285 None:intergenic
GGTTTCTCAAACAACTTGAA+AGG 0.517413 1_1:-57218651 Msa0030760:CDS
AGAAATGTCTTAAGTGGAAG+TGG 0.522801 1_1:-57218414 Msa0030760:CDS
AAAATCAATCAGCCAAAGCA+AGG 0.543664 1_1:+57216930 None:intergenic
GGAGCATCAGATAAGCCACC+AGG 0.544264 1_1:-57217542 Msa0030760:CDS
TACCTCAGCCCATGTTTCCA+TGG 0.544343 1_1:+57217508 None:intergenic
CTTCCATTCCTCACTGGCGT+AGG 0.567976 1_1:-57218291 Msa0030760:intron
AAGGCTCCTTCAGCATTCGC+CGG 0.569196 1_1:+57216514 None:intergenic
CTTCCTTCCAATAGACATGG+TGG 0.571251 1_1:+57216083 None:intergenic
GAATGGAAGCACCAAAGCCA+TGG 0.571641 1_1:+57218305 None:intergenic
AGGGAACCGGCGAATGCTGA+AGG 0.582575 1_1:-57216520 Msa0030760:CDS
TCAGAGTTCTTGGGAAAACA+TGG 0.583064 1_1:-57216049 Msa0030760:three_prime_UTR
TACCATGGAAACATGGGCTG+AGG 0.583191 1_1:-57217510 Msa0030760:intron
GTATGGAAATAAGGAGGCTG+TGG 0.584738 1_1:-57216748 Msa0030760:CDS
ATACCTACGCCAGTGAGGAA+TGG 0.584882 1_1:+57218288 None:intergenic
AATTGCACCGGATTAGGCCC+CGG 0.587167 1_1:+57216460 None:intergenic
ACACCACCATGTCTATTGGA+AGG 0.595153 1_1:-57216086 Msa0030760:three_prime_UTR
AAATCAATCAGCCAAAGCAA+GGG 0.595342 1_1:+57216931 None:intergenic
TGTCTTAAGTGGAAGTGGAA+AGG 0.597275 1_1:-57218409 Msa0030760:CDS
TTCGTATACCATGGAAACAT+GGG 0.598366 1_1:-57217516 Msa0030760:CDS
ATCAACATAATCTATACATG+TGG 0.601133 1_1:+57216131 None:intergenic
GTGCTATTAAATTGTTCTGG+TGG 0.607382 1_1:-57217003 Msa0030760:CDS
TTTCTTCCTTCCAATAGACA+TGG 0.618190 1_1:+57216080 None:intergenic
CAATCAGCCAAAGCAAGGGA+AGG 0.620564 1_1:+57216935 None:intergenic
CATTTGTATCAATTGTAACA+GGG 0.626940 1_1:-57216486 Msa0030760:CDS
GGCTGTGGATGATGAACTCG+TGG 0.631002 1_1:-57216733 Msa0030760:CDS
CATGGACAAGTAACAGAGGA+GGG 0.632484 1_1:+57218323 None:intergenic
CACTTAAGCATCCAAAACAA+TGG 0.634989 1_1:-57218541 Msa0030760:CDS
TCCATGGTATACGAAAAGCC+TGG 0.647873 1_1:+57217524 None:intergenic
TTCAGTGTATGGAAATAAGG+AGG 0.648155 1_1:-57216754 Msa0030760:CDS
CCATGGACAAGTAACAGAGG+AGG 0.649384 1_1:+57218322 None:intergenic
CAATTGTAACAGGGCCGCCG+GGG 0.653302 1_1:-57216477 Msa0030760:CDS
TCAACTGTTCATGCTTGAAG+GGG 0.658262 1_1:-57216320 Msa0030760:CDS
TTAAGCATCCAAAACAATGG+TGG 0.671828 1_1:-57218538 Msa0030760:CDS
AATTCAGGCCTGTCATCATG+GGG 0.687756 1_1:+57216286 None:intergenic
TGCACCGGATTAGGCCCCGG+CGG 0.694178 1_1:+57216463 None:intergenic
ATGGTATACGAAAAGCCTGG+TGG 0.725251 1_1:+57217527 None:intergenic
AAGCCATGGACAAGTAACAG+AGG 0.730393 1_1:+57218319 None:intergenic
CAAACATACCTACGCCAGTG+AGG 0.731840 1_1:+57218283 None:intergenic
TGTGGATGATGAACTCGTGG+AGG 0.755163 1_1:-57216730 Msa0030760:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAACAAAATAATTTA+TGG + chr1_1:57216276-57216295 None:intergenic 10.0%
!!! TTCTTTTACATTTAATTTAT+AGG + chr1_1:57218687-57218706 None:intergenic 10.0%
!!! CATAACAAATTTAACTTATA+CGG - chr1_1:57217379-57217398 Msa0030760:intron 15.0%
!!! ACTTATAAGAATTCATATTT+TGG - chr1_1:57218094-57218113 Msa0030760:intron 15.0%
!!! ATACATTATTTCTGAATACA+TGG + chr1_1:57216617-57216636 None:intergenic 20.0%
!!! ATAAAATTGTGACATTTTAG+AGG + chr1_1:57216954-57216973 None:intergenic 20.0%
!!! TCAACTATTTTTCTCAAAAT+TGG - chr1_1:57216998-57217017 Msa0030760:CDS 20.0%
!!! CAACTATTTTTCTCAAAATT+GGG - chr1_1:57216999-57217018 Msa0030760:CDS 20.0%
!!! TCTCTAAAATAGTTATATTG+CGG + chr1_1:57217242-57217261 None:intergenic 20.0%
!!! TGATTTTTTATTGAACCAAA+AGG - chr1_1:57217737-57217756 Msa0030760:intron 20.0%
!!! GATTTTTTATTGAACCAAAA+GGG - chr1_1:57217738-57217757 Msa0030760:intron 20.0%
!! CAAAAAATTTAGGGAAATTA+TGG + chr1_1:57217819-57217838 None:intergenic 20.0%
!!! ATTTCCCTAAATTTTTTGAT+AGG - chr1_1:57217821-57217840 Msa0030760:intron 20.0%
!! GTTTCCTATCAAAAAATTTA+GGG + chr1_1:57217828-57217847 None:intergenic 20.0%
!! TGTTTCCTATCAAAAAATTT+AGG + chr1_1:57217829-57217848 None:intergenic 20.0%
!! AAAAAAATTAATACTCCTTC+CGG + chr1_1:57218057-57218076 None:intergenic 20.0%
!!! AAAATAGGCAATGATATTTT+TGG + chr1_1:57218221-57218240 None:intergenic 20.0%
!!! ATTGCCTATTTTACTTTTAT+GGG - chr1_1:57218229-57218248 Msa0030760:intron 20.0%
!!! AACCTTTTATAGTTTGTAAT+TGG - chr1_1:57218462-57218481 Msa0030760:CDS 20.0%
! AAAATATGAGTTATTGACAG+TGG + chr1_1:57216394-57216413 None:intergenic 25.0%
!! CTTTTAGCAAAAAAAATGAG+TGG + chr1_1:57216433-57216452 None:intergenic 25.0%
! AGAATATAAAGTGACAAACA+AGG + chr1_1:57216466-57216485 None:intergenic 25.0%
! AATTGTAAAAGAAACTGATG+AGG - chr1_1:57216706-57216725 Msa0030760:intron 25.0%
! TAGATCCAATATTATCAACA+AGG - chr1_1:57216812-57216831 Msa0030760:intron 25.0%
!! ACTCTATTTCTCAATCATAA+AGG + chr1_1:57216858-57216877 None:intergenic 25.0%
! TTTAATGATGTCGAACTAAA+AGG + chr1_1:57217181-57217200 None:intergenic 25.0%
!! ATTGTGCTATTAAATTGTTC+TGG - chr1_1:57217645-57217664 Msa0030760:intron 25.0%
! AAAGGTAATCTCTTTAGATT+AGG - chr1_1:57217793-57217812 Msa0030760:intron 25.0%
!! ATTTTTGTCTACAAAACCAA+CGG + chr1_1:57217996-57218015 None:intergenic 25.0%
! AATTGATACAAATGCATCTA+AGG + chr1_1:57218159-57218178 None:intergenic 25.0%
! CATTTGTATCAATTGTAACA+GGG - chr1_1:57218165-57218184 Msa0030760:intron 25.0%
!!! CATTGCCTATTTTACTTTTA+TGG - chr1_1:57218228-57218247 Msa0030760:intron 25.0%
!!! TTGCCTATTTTACTTTTATG+GGG - chr1_1:57218230-57218249 Msa0030760:intron 25.0%
!!! AATTTTTCATGGACTAATTC+AGG + chr1_1:57218383-57218402 None:intergenic 25.0%
! CACCAATTACAAACTATAAA+AGG + chr1_1:57218467-57218486 None:intergenic 25.0%
! ATCAACATAATCTATACATG+TGG + chr1_1:57218523-57218542 None:intergenic 25.0%
TAATGATCCTGAAGTTTCTA+TGG + chr1_1:57216195-57216214 None:intergenic 30.0%
TAAAGCAGAAATGTCTTAAG+TGG - chr1_1:57216231-57216250 Msa0030760:exon 30.0%
AGTATAATTAACTTCCGCTT+AGG + chr1_1:57216556-57216575 None:intergenic 30.0%
AAGCGGAAGTTAATTATACT+AGG - chr1_1:57216556-57216575 Msa0030760:intron 30.0%
!! AACAGCCTTGTTGATAATAT+TGG + chr1_1:57216820-57216839 None:intergenic 30.0%
!!! AGGCTGTTATTTTAACTACA+TGG - chr1_1:57216832-57216851 Msa0030760:intron 30.0%
!!! TCAACCTTGTTTTAACTACA+TGG + chr1_1:57216916-57216935 None:intergenic 30.0%
! TTCTCAAAATTGGGTTGTAA+AGG - chr1_1:57217008-57217027 Msa0030760:CDS 30.0%
GTTTATGCTATTGATCTTCT+TGG - chr1_1:57217082-57217101 Msa0030760:intron 30.0%
CTTGATATTTAGGCAAAATG+TGG + chr1_1:57217297-57217316 None:intergenic 30.0%
! CACATTTTGCCTAAATATCA+AGG - chr1_1:57217295-57217314 Msa0030760:intron 30.0%
TGATGCAAACCTTGATATTT+AGG + chr1_1:57217307-57217326 None:intergenic 30.0%
TCAATACAAACAGTTGATCT+TGG - chr1_1:57217410-57217429 Msa0030760:intron 30.0%
!! ACAAAGCAATTGTTGATGAT+TGG - chr1_1:57217679-57217698 Msa0030760:intron 30.0%
!! TTTTTGAGCGTGTTAAACAA+AGG - chr1_1:57217775-57217794 Msa0030760:intron 30.0%
TTAAATGCAGAGAGAATTTG+AGG - chr1_1:57217863-57217882 Msa0030760:intron 30.0%
TACAAAACCAACGGTTAAAA+AGG + chr1_1:57217987-57218006 None:intergenic 30.0%
!!! TTGTCGTTTTCAAAGTTCAA+TGG - chr1_1:57218026-57218045 Msa0030760:intron 30.0%
GCATTTGTATCAATTGTAAC+AGG - chr1_1:57218164-57218183 Msa0030760:intron 30.0%
TCTCCCCATAAAAGTAAAAT+AGG + chr1_1:57218236-57218255 None:intergenic 30.0%
! TGAACATTTTCTTGTTGAGA+AGG + chr1_1:57218314-57218333 None:intergenic 30.0%
! ATATGTGACAGTTTTTCATG+AGG + chr1_1:57218497-57218516 None:intergenic 30.0%
CTTCTTGATACAACGTATTT+GGG + chr1_1:57218664-57218683 None:intergenic 30.0%
GGTTTCTCAAACAACTTGAA+AGG - chr1_1:57216000-57216019 Msa0030760:three_prime_UTR 35.0%
!! CAATGAAGAAGAGTGTTCTT+TGG + chr1_1:57216074-57216093 None:intergenic 35.0%
! TTTTGGATGCTTAAGTGGTT+TGG + chr1_1:57216107-57216126 None:intergenic 35.0%
!!! CATTGTTTTGGATGCTTAAG+TGG + chr1_1:57216112-57216131 None:intergenic 35.0%
CACTTAAGCATCCAAAACAA+TGG - chr1_1:57216110-57216129 Msa0030760:three_prime_UTR 35.0%
TTAAGCATCCAAAACAATGG+TGG - chr1_1:57216113-57216132 Msa0030760:three_prime_UTR 35.0%
!! TGTTTCTACCACCATTGTTT+TGG + chr1_1:57216124-57216143 None:intergenic 35.0%
AGAAATGTCTTAAGTGGAAG+TGG - chr1_1:57216237-57216256 Msa0030760:exon 35.0%
AAATGAGTGGATGAGAATTG+TGG + chr1_1:57216420-57216439 None:intergenic 35.0%
GAAATGAATTAGTGCCTAAG+TGG - chr1_1:57216578-57216597 Msa0030760:intron 35.0%
ACGTACATGATTGAGAAGAA+AGG + chr1_1:57216893-57216912 None:intergenic 35.0%
ACGTCCATGTAGTTAAAACA+AGG - chr1_1:57216909-57216928 Msa0030760:CDS 35.0%
!! TTGTGACATTTTAGAGGCAT+CGG + chr1_1:57216948-57216967 None:intergenic 35.0%
GACACTGTCTGAGAATTATA+CGG - chr1_1:57217060-57217079 Msa0030760:intron 35.0%
! GCTATTGATCTTCTTGGTTT+TGG - chr1_1:57217088-57217107 Msa0030760:intron 35.0%
TTTCGTATACCATGGAAACA+TGG - chr1_1:57217134-57217153 Msa0030760:intron 35.0%
TTCGTATACCATGGAAACAT+GGG - chr1_1:57217135-57217154 Msa0030760:intron 35.0%
TTGTAGTTTGGACTGCAAAT+TGG + chr1_1:57217213-57217232 None:intergenic 35.0%
CTGCATTGTAACTGTAATTG+CGG - chr1_1:57217271-57217290 Msa0030760:intron 35.0%
ACAGTTGATCTTGGATTTCT+TGG - chr1_1:57217419-57217438 Msa0030760:intron 35.0%
GAGTTTCCTATTAGTACTGT+TGG + chr1_1:57217462-57217481 None:intergenic 35.0%
GTACTAATAGGAAACTCTGT+TGG - chr1_1:57217465-57217484 Msa0030760:intron 35.0%
ACTAGAGTTTCACTTGAATC+TGG + chr1_1:57217618-57217637 None:intergenic 35.0%
TCAAGTGAAACTCTAGTTAG+AGG - chr1_1:57217621-57217640 Msa0030760:intron 35.0%
! GTGCTATTAAATTGTTCTGG+TGG - chr1_1:57217648-57217667 Msa0030760:intron 35.0%
AAATCAATCAGCCAAAGCAA+GGG + chr1_1:57217723-57217742 None:intergenic 35.0%
AAAATCAATCAGCCAAAGCA+AGG + chr1_1:57217724-57217743 None:intergenic 35.0%
AACATCTTGAGTTCAGTGTA+TGG - chr1_1:57217886-57217905 Msa0030760:intron 35.0%
GAGTTCAGTGTATGGAAATA+AGG - chr1_1:57217894-57217913 Msa0030760:intron 35.0%
TTCAGTGTATGGAAATAAGG+AGG - chr1_1:57217897-57217916 Msa0030760:intron 35.0%
TCAAAGTTCAATGGAATCAC+CGG - chr1_1:57218035-57218054 Msa0030760:intron 35.0%
!!! TTTTGGTTCCTCAGATCATT+AGG - chr1_1:57218111-57218130 Msa0030760:intron 35.0%
! TTTGGTTCCTCAGATCATTA+GGG - chr1_1:57218112-57218131 Msa0030760:intron 35.0%
!! GAAGAAAAGTACTTTCCAAC+AGG + chr1_1:57218287-57218306 None:intergenic 35.0%
TTCAACTGTTCATGCTTGAA+GGG - chr1_1:57218330-57218349 Msa0030760:CDS 35.0%
TCCATGAAAAATTGCTTCCA+TGG - chr1_1:57218390-57218409 Msa0030760:CDS 35.0%
! ACCATGGAAGCAATTTTTCA+TGG + chr1_1:57218394-57218413 None:intergenic 35.0%
TGAAAAATTGCTTCCATGGT+TGG - chr1_1:57218394-57218413 Msa0030760:CDS 35.0%
!! TTTTAAAGAGTTGCCAACCA+TGG + chr1_1:57218410-57218429 None:intergenic 35.0%
ATTTACACCACCATGTCTAT+TGG - chr1_1:57218561-57218580 Msa0030760:CDS 35.0%
TTTCTTCCTTCCAATAGACA+TGG + chr1_1:57218574-57218593 None:intergenic 35.0%
ATGTCTATTGGAAGGAAGAA+AGG - chr1_1:57218573-57218592 Msa0030760:CDS 35.0%
GCTTCTTGATACAACGTATT+TGG + chr1_1:57218665-57218684 None:intergenic 35.0%
GAAAGGTTCAACAGCATCAA+TGG - chr1_1:57216017-57216036 Msa0030760:three_prime_UTR 40.0%
! GGTTTTTGTGGATAGGAACA+AGG + chr1_1:57216045-57216064 None:intergenic 40.0%
! GTGTAGTGGTTTTTGTGGAT+AGG + chr1_1:57216052-57216071 None:intergenic 40.0%
!! CTTTGGTGTAGTGGTTTTTG+TGG + chr1_1:57216057-57216076 None:intergenic 40.0%
!! AAGAGTGTTCTTTGGTGTAG+TGG + chr1_1:57216066-57216085 None:intergenic 40.0%
TGTCTTAAGTGGAAGTGGAA+AGG - chr1_1:57216242-57216261 Msa0030760:exon 40.0%
AAGTAACAGAGGAGGGTTAT+TGG + chr1_1:57216324-57216343 None:intergenic 40.0%
!! TGTGCATTTTAGTGCCTAAG+CGG - chr1_1:57216539-57216558 Msa0030760:intron 40.0%
GGCATCATCATTTATCTGAC+AGG - chr1_1:57217029-57217048 Msa0030760:CDS 40.0%
ACAGTTCTTAATCGCAGTTG+CGG + chr1_1:57217345-57217364 None:intergenic 40.0%
CAGAAGCCAACAGTACTAAT+AGG - chr1_1:57217453-57217472 Msa0030760:intron 40.0%
! TTGCAGAAGCAATTCCCTTT+TGG + chr1_1:57217755-57217774 None:intergenic 40.0%
GAACTCGTGGAGGTAAATTA+AGG - chr1_1:57217931-57217950 Msa0030760:intron 40.0%
! CTTCGTTCCTTTTTAACCGT+TGG - chr1_1:57217977-57217996 Msa0030760:intron 40.0%
!!! ATTTTTGGCACCAATTGCAC+CGG + chr1_1:57218206-57218225 None:intergenic 40.0%
GATCCCTTTACTCCAATTGA+TGG - chr1_1:57218260-57218279 Msa0030760:intron 40.0%
GGTCCATCAATTGGAGTAAA+GGG + chr1_1:57218266-57218285 None:intergenic 40.0%
AGGTCCATCAATTGGAGTAA+AGG + chr1_1:57218267-57218286 None:intergenic 40.0%
TTTCCAACAGGTCCATCAAT+TGG + chr1_1:57218275-57218294 None:intergenic 40.0%
GTTCAACTGTTCATGCTTGA+AGG - chr1_1:57218329-57218348 Msa0030760:CDS 40.0%
TCAACTGTTCATGCTTGAAG+GGG - chr1_1:57218331-57218350 Msa0030760:CDS 40.0%
TAATTCAGGCCTGTCATCAT+GGG + chr1_1:57218369-57218388 None:intergenic 40.0%
AAGGTTACGTTCAGAGTTCT+TGG - chr1_1:57218592-57218611 Msa0030760:CDS 40.0%
AGGTTACGTTCAGAGTTCTT+GGG - chr1_1:57218593-57218612 Msa0030760:CDS 40.0%
TCAGAGTTCTTGGGAAAACA+TGG - chr1_1:57218602-57218621 Msa0030760:CDS 40.0%
! ACGAGTGCTGTTCATTCAGT+TGG - chr1_1:57215978-57215997 Msa0030760:three_prime_UTR 45.0%
! CGAGTGCTGTTCATTCAGTT+GGG - chr1_1:57215979-57215998 Msa0030760:three_prime_UTR 45.0%
GCTGCTTCCATAGAAACTTC+AGG - chr1_1:57216185-57216204 Msa0030760:three_prime_UTR 45.0%
CATGGACAAGTAACAGAGGA+GGG + chr1_1:57216331-57216350 None:intergenic 45.0%
AAGCCATGGACAAGTAACAG+AGG + chr1_1:57216335-57216354 None:intergenic 45.0%
! CTGTTACTTGTCCATGGCTT+TGG - chr1_1:57216335-57216354 Msa0030760:CDS 45.0%
GACGTGATTATGCACCACTT+AGG + chr1_1:57216595-57216614 None:intergenic 45.0%
ATGGTATACGAAAAGCCTGG+TGG + chr1_1:57217127-57217146 None:intergenic 45.0%
! ACCAGGCTTTTCGTATACCA+TGG - chr1_1:57217126-57217145 Msa0030760:intron 45.0%
TCCATGGTATACGAAAAGCC+TGG + chr1_1:57217130-57217149 None:intergenic 45.0%
! TGGGCTGAGGTATTTGTCTA+AGG - chr1_1:57217154-57217173 Msa0030760:CDS 45.0%
TTGCGGCTGCAATTGTAGTT+TGG + chr1_1:57217225-57217244 None:intergenic 45.0%
AGTTACTCCTTCCCTTGCTT+TGG - chr1_1:57217709-57217728 Msa0030760:intron 45.0%
GTATGGAAATAAGGAGGCTG+TGG - chr1_1:57217903-57217922 Msa0030760:intron 45.0%
AGTTCAATGGAATCACCGGA+AGG - chr1_1:57218039-57218058 Msa0030760:intron 45.0%
TCCTCAGATCATTAGGGAAC+CGG - chr1_1:57218118-57218137 Msa0030760:intron 45.0%
! ACTCCAATTGATGGACCTGT+TGG - chr1_1:57218269-57218288 Msa0030760:intron 45.0%
AATTCAGGCCTGTCATCATG+GGG + chr1_1:57218368-57218387 None:intergenic 45.0%
CTAATTCAGGCCTGTCATCA+TGG + chr1_1:57218370-57218389 None:intergenic 45.0%
ACACCACCATGTCTATTGGA+AGG - chr1_1:57218565-57218584 Msa0030760:CDS 45.0%
CTTCCTTCCAATAGACATGG+TGG + chr1_1:57218571-57218590 None:intergenic 45.0%
CCATGGACAAGTAACAGAGG+AGG + chr1_1:57216332-57216351 None:intergenic 50.0%
! CCTCCTCTGTTACTTGTCCA+TGG - chr1_1:57216329-57216348 Msa0030760:CDS 50.0%
!! GAATGGAAGCACCAAAGCCA+TGG + chr1_1:57216349-57216368 None:intergenic 50.0%
! TTGGTGCTTCCATTCCTCAC+TGG - chr1_1:57216354-57216373 Msa0030760:CDS 50.0%
ATACCTACGCCAGTGAGGAA+TGG + chr1_1:57216366-57216385 None:intergenic 50.0%
CAAACATACCTACGCCAGTG+AGG + chr1_1:57216371-57216390 None:intergenic 50.0%
! TACCATGGAAACATGGGCTG+AGG - chr1_1:57217141-57217160 Msa0030760:intron 50.0%
TACCTCAGCCCATGTTTCCA+TGG + chr1_1:57217146-57217165 None:intergenic 50.0%
! TGTCTCATTGCTGCTGCTTC+AGG - chr1_1:57217498-57217517 Msa0030760:intron 50.0%
CAATCAGCCAAAGCAAGGGA+AGG + chr1_1:57217719-57217738 None:intergenic 50.0%
TGTGGATGATGAACTCGTGG+AGG - chr1_1:57217921-57217940 Msa0030760:intron 50.0%
ATCAATTGTAACAGGGCCGC+CGG - chr1_1:57218172-57218191 Msa0030760:intron 50.0%
CTGTTCATGCTTGAAGGGGT+TGG - chr1_1:57218335-57218354 Msa0030760:CDS 50.0%
GACATTGTCCCCATGATGAC+AGG - chr1_1:57218357-57218376 Msa0030760:CDS 50.0%
CTTCCATTCCTCACTGGCGT+AGG - chr1_1:57216360-57216379 Msa0030760:CDS 55.0%
! GGAGCATCAGATAAGCCACC+AGG - chr1_1:57217109-57217128 Msa0030760:intron 55.0%
GGCTGTGGATGATGAACTCG+TGG - chr1_1:57217918-57217937 Msa0030760:intron 55.0%
! GCCGGTTCCCTAATGATCTG+AGG + chr1_1:57218122-57218141 None:intergenic 55.0%
AAGGCTCCTTCAGCATTCGC+CGG + chr1_1:57218140-57218159 None:intergenic 55.0%
TCAATTGTAACAGGGCCGCC+GGG - chr1_1:57218173-57218192 Msa0030760:intron 55.0%
! AATTGCACCGGATTAGGCCC+CGG + chr1_1:57218194-57218213 None:intergenic 55.0%
GGCACCAATTGCACCGGATT+AGG + chr1_1:57218200-57218219 None:intergenic 55.0%
AGGGAACCGGCGAATGCTGA+AGG - chr1_1:57218131-57218150 Msa0030760:intron 60.0%
CAATTGTAACAGGGCCGCCG+GGG - chr1_1:57218174-57218193 Msa0030760:intron 60.0%
GGGGCCTAATCCGGTGCAAT+TGG - chr1_1:57218193-57218212 Msa0030760:intron 60.0%
! TGCACCGGATTAGGCCCCGG+CGG + chr1_1:57218191-57218210 None:intergenic 70.0%
AGGGCCGCCGGGGCCTAATC+CGG - chr1_1:57218184-57218203 Msa0030760:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57215962 57218711 57215962 ID=Msa0030760;Name=Msa0030760
chr1_1 mRNA 57215962 57218711 57215962 ID=Msa0030760-mRNA-1;Parent=Msa0030760;Name=Msa0030760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=7|1|1|1|1|1|6|284|395
chr1_1 exon 57215962 57216548 57215962 ID=Msa0030760-mRNA-1:exon:17275;Parent=Msa0030760-mRNA-1
chr1_1 exon 57216731 57216800 57216731 ID=Msa0030760-mRNA-1:exon:17274;Parent=Msa0030760-mRNA-1
chr1_1 exon 57216877 57217065 57216877 ID=Msa0030760-mRNA-1:exon:17273;Parent=Msa0030760-mRNA-1
chr1_1 exon 57217150 57217250 57217150 ID=Msa0030760-mRNA-1:exon:17272;Parent=Msa0030760-mRNA-1
chr1_1 exon 57217511 57217622 57217511 ID=Msa0030760-mRNA-1:exon:17271;Parent=Msa0030760-mRNA-1
chr1_1 exon 57218292 57218711 57218292 ID=Msa0030760-mRNA-1:exon:17270;Parent=Msa0030760-mRNA-1
chr1_1 five_prime_UTR 57218705 57218711 57218705 ID=Msa0030760-mRNA-1:five_prime_utr;Parent=Msa0030760-mRNA-1
chr1_1 CDS 57218292 57218704 57218292 ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1 CDS 57217511 57217622 57217511 ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1 CDS 57217150 57217250 57217150 ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1 CDS 57216877 57217065 57216877 ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1 CDS 57216731 57216800 57216731 ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1 CDS 57216246 57216548 57216246 ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1 three_prime_UTR 57215962 57216245 57215962 ID=Msa0030760-mRNA-1:three_prime_utr;Parent=Msa0030760-mRNA-1
Gene Sequence

>Msa0030760

ATGGAAGTGACGAGTGCTGTTCATTCAGTTGGGTTTCTCAAACAACTTGAAAGGTTCAACAGCATCAATGGATCCTTGTTCCTATCCACAAAAACCACTACACCAAAGAACACTCTTCTTCATTGTTATCTTCATCCAAACCACTTAAGCATCCAAAACAATGGTGGTAGAAACAGTAAAAGTGTGATCATCAACTCAAACTCAACTTCTTCTTCTGCTGCTTCCATAGAAACTTCAGGATCATTATCTGAAGTTGAAAAGATAAAGCAGAAATGTCTTAAGTGGAAGTGGAAAGGTGAATATTCCATAAATTATTTTGTTTCTTTAGACTCATCTTCAGATTCTGCAAAGTCCAATAACCCTCCTCTGTTACTTGTCCATGGCTTTGGTGCTTCCATTCCTCACTGGCGTAGGAATATCAAGACACTGTCTGAGAATTATACGGTTTATGCTATTGATCTTCTTGGTTTTGGAGCATCAGATAAGCCACCAGGCTTTTCGTATACCATGGAAACATGGGCTGAGTTGATCTTGGATTTCTTGGATGAAGTTGTTCAGAAGCCAACAGTACTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCTGCTTCAGGCATTATTCGACCAGATTCAAGTGAAACTCTAGTTAGAGGAATTGTGCTATTAAATTGTTCTGGTGGCATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGAGAGAATTTGAGGAACATCTTGAGTTCAGTGTATGGAAATAAGGAGGCTGTGGATGATGAACTCGTGGAGATCATTAGGGAACCGGCGAATGCTGAAGGAGCCTTAGATGCATTTGTATCAATTGTAACAGGGCCGCCGGGGCCTAATCCGGTGCAATTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>Msa0030760

MEVTSAVHSVGFLKQLERFNSINGSLFLSTKTTTPKNTLLHCYLHPNHLSIQNNGGRNSKSVIINSNSTSSSAASIETSGSLSEVEKIKQKCLKWKWKGEYSINYFVSLDSSSDSAKSNNPPLLLVHGFGASIPHWRRNIKTLSENYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLDEVVQKPTVLIGNSVGSLACLIAAASGIIRPDSSETLVRGIVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRENLRNILSSVYGNKEAVDDELVEIIREPANAEGALDAFVSIVTGPPGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEGVGHCPHDDRPELVHEKLLPWLATL*