AlfalfaGEDB | Msa0030760

M. sativa cultivar zhongmu-4 / Msa0030760

KEGG: -
GO: -
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030760	XP_013468801.1	96.212	396	8	3	1	395	1	390	0.0	763

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030760	sp\|Q9FFZ1\|PPH_ARATH	25.542	415	220	16	44	395	26	414	9.51e-21	97.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030760	A0A072VN42	96.212	396	8	3	1	395	1	390	0.0	763

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0030760	0.803448	3.469100e-49	-8.615850e-47
Msa0000220	Msa0030760	0.823306	1.486738e-53	-8.615850e-47
Msa0000610	Msa0030760	0.874197	8.150675e-68	-8.615850e-47
Msa0000800	Msa0030760	-0.834381	3.098080e-56	-8.615850e-47
Msa0001040	Msa0030760	0.854823	9.520368e-62	-8.615850e-47
Msa0001510	Msa0030760	0.875173	3.797017e-68	-8.615850e-47
Msa0002110	Msa0030760	0.882506	9.840693e-71	-8.615850e-47
Msa0002690	Msa0030760	0.892768	1.170754e-74	-8.615850e-47
Msa0002700	Msa0030760	0.887058	1.991929e-72	-8.615850e-47
Msa0003340	Msa0030760	0.897919	8.805977e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030760	MtrunA17_Chr1g0188361	96.212	396	8	3	1	395	1	390	0.0	763
Msa0030760	MtrunA17_Chr5g0423381	34.967	306	168	9	86	385	50	330	1.04e-52	179
Msa0030760	MtrunA17_Chr8g0372991	36.313	358	189	13	47	395	38	365	3.11e-51	176
Msa0030760	MtrunA17_Chr4g0018641	31.190	311	172	12	89	392	398	673	4.21e-25	107
Msa0030760	MtrunA17_Chr3g0090521	24.507	355	200	13	84	395	121	450	6.45e-22	97.4
Msa0030760	MtrunA17_Chr4g0003831	25.256	293	175	10	124	395	373	642	6.19e-16	79.7
Msa0030760	MtrunA17_Chr2g0332311	24.573	293	179	9	123	395	376	646	1.40e-12	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030760	AT5G38520.1	68.788	330	93	3	68	395	38	359	1.15e-158	451
Msa0030760	AT5G38520.2	67.560	336	99	3	68	395	38	371	5.60e-158	449
Msa0030760	AT5G19850.1	34.118	340	185	10	57	385	38	349	8.56e-55	185
Msa0030760	AT4G36530.1	33.333	342	176	14	67	393	2	306	3.57e-46	161
Msa0030760	AT4G36530.2	31.662	379	201	16	30	393	28	363	1.33e-45	161
Msa0030760	AT5G13800.2	25.542	415	220	16	44	395	26	414	9.66e-22	97.1
Msa0030760	AT5G13800.1	25.542	415	220	16	44	395	26	414	9.66e-22	97.1
Msa0030760	AT5G13800.3	25.542	415	220	16	44	395	49	437	1.23e-21	97.1
Msa0030760	AT5G13800.4	25.558	403	211	16	44	383	26	402	1.53e-20	93.2
Msa0030760	AT4G25290.1	28.182	330	177	12	81	395	386	670	4.09e-20	92.8

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Find 102 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATCAGCCAAAGCA+AGG	0.543664	1_1:+57216930	None:intergenic
AAATCAATCAGCCAAAGCAA+GGG	0.595342	1_1:+57216931	None:intergenic
AACATCTTGAGTTCAGTGTA+TGG	0.513396	1_1:-57216765	Msa0030760:CDS
AAGAGTGTTCTTTGGTGTAG+TGG	0.482090	1_1:+57218588	None:intergenic
AAGCCATGGACAAGTAACAG+AGG	0.730393	1_1:+57218319	None:intergenic
AAGGCTCCTTCAGCATTCGC+CGG	0.569196	1_1:+57216514	None:intergenic
AAGGTTACGTTCAGAGTTCT+TGG	0.313499	1_1:-57216059	Msa0030760:three_prime_UTR
AAGTAACAGAGGAGGGTTAT+TGG	0.354968	1_1:+57218330	None:intergenic
AATTCAGGCCTGTCATCATG+GGG	0.687756	1_1:+57216286	None:intergenic
AATTGATACAAATGCATCTA+AGG	0.330008	1_1:+57216495	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGATCCTGAAGTTTCTA+TGG	+	chr1_1:57216195-57216214	None:intergenic	30.0%
TAAAGCAGAAATGTCTTAAG+TGG	-	chr1_1:57216231-57216250	Msa0030760:exon	30.0%
AGTATAATTAACTTCCGCTT+AGG	+	chr1_1:57216556-57216575	None:intergenic	30.0%
AAGCGGAAGTTAATTATACT+AGG	-	chr1_1:57216556-57216575	Msa0030760:intron	30.0%
GTTTATGCTATTGATCTTCT+TGG	-	chr1_1:57217082-57217101	Msa0030760:intron	30.0%
CTTGATATTTAGGCAAAATG+TGG	+	chr1_1:57217297-57217316	None:intergenic	30.0%
TGATGCAAACCTTGATATTT+AGG	+	chr1_1:57217307-57217326	None:intergenic	30.0%
TCAATACAAACAGTTGATCT+TGG	-	chr1_1:57217410-57217429	Msa0030760:intron	30.0%
TTAAATGCAGAGAGAATTTG+AGG	-	chr1_1:57217863-57217882	Msa0030760:intron	30.0%
TACAAAACCAACGGTTAAAA+AGG	+	chr1_1:57217987-57218006	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	57215962	57218711	57215962	ID=Msa0030760;Name=Msa0030760
chr1_1	mRNA	57215962	57218711	57215962	ID=Msa0030760-mRNA-1;Parent=Msa0030760;Name=Msa0030760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=7\|1\|1\|1\|1\|1\|6\|284\|395
chr1_1	exon	57215962	57216548	57215962	ID=Msa0030760-mRNA-1:exon:17275;Parent=Msa0030760-mRNA-1
chr1_1	exon	57216731	57216800	57216731	ID=Msa0030760-mRNA-1:exon:17274;Parent=Msa0030760-mRNA-1
chr1_1	exon	57216877	57217065	57216877	ID=Msa0030760-mRNA-1:exon:17273;Parent=Msa0030760-mRNA-1
chr1_1	exon	57217150	57217250	57217150	ID=Msa0030760-mRNA-1:exon:17272;Parent=Msa0030760-mRNA-1
chr1_1	exon	57217511	57217622	57217511	ID=Msa0030760-mRNA-1:exon:17271;Parent=Msa0030760-mRNA-1
chr1_1	exon	57218292	57218711	57218292	ID=Msa0030760-mRNA-1:exon:17270;Parent=Msa0030760-mRNA-1
chr1_1	five_prime_UTR	57218705	57218711	57218705	ID=Msa0030760-mRNA-1:five_prime_utr;Parent=Msa0030760-mRNA-1
chr1_1	CDS	57218292	57218704	57218292	ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1	CDS	57217511	57217622	57217511	ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1	CDS	57217150	57217250	57217150	ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1	CDS	57216877	57217065	57216877	ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1	CDS	57216731	57216800	57216731	ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1	CDS	57216246	57216548	57216246	ID=Msa0030760-mRNA-1:cds;Parent=Msa0030760-mRNA-1
chr1_1	three_prime_UTR	57215962	57216245	57215962	ID=Msa0030760-mRNA-1:three_prime_utr;Parent=Msa0030760-mRNA-1

Gene Sequence

>Msa0030760

ATGGAAGTGACGAGTGCTGTTCATTCAGTTGGGTTTCTCAAACAACTTGAAAGGTTCAACAGCATCAATGGATCCTTGTTCCTATCCACAAAAACCACTACACCAAAGAACACTCTTCTTCATTGTTATCTTCATCCAAACCACTTAAGCATCCAAAACAATGGTGGTAGAAACAGTAAAAGTGTGATCATCAACTCAAACTCAACTTCTTCTTCTGCTGCTTCCATAGAAACTTCAGGATCATTATCTGAAGTTGAAAAGATAAAGCAGAAATGTCTTAAGTGGAAGTGGAAAGGTGAATATTCCATAAATTATTTTGTTTCTTTAGACTCATCTTCAGATTCTGCAAAGTCCAATAACCCTCCTCTGTTACTTGTCCATGGCTTTGGTGCTTCCATTCCTCACTGGCGTAGGAATATCAAGACACTGTCTGAGAATTATACGGTTTATGCTATTGATCTTCTTGGTTTTGGAGCATCAGATAAGCCACCAGGCTTTTCGTATACCATGGAAACATGGGCTGAGTTGATCTTGGATTTCTTGGATGAAGTTGTTCAGAAGCCAACAGTACTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCTGCTTCAGGCATTATTCGACCAGATTCAAGTGAAACTCTAGTTAGAGGAATTGTGCTATTAAATTGTTCTGGTGGCATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGAGAGAATTTGAGGAACATCTTGAGTTCAGTGTATGGAAATAAGGAGGCTGTGGATGATGAACTCGTGGAGATCATTAGGGAACCGGCGAATGCTGAAGGAGCCTTAGATGCATTTGTATCAATTGTAACAGGGCCGCCGGGGCCTAATCCGGTGCAATTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>Msa0030760

MEVTSAVHSVGFLKQLERFNSINGSLFLSTKTTTPKNTLLHCYLHPNHLSIQNNGGRNSKSVIINSNSTSSSAASIETSGSLSEVEKIKQKCLKWKWKGEYSINYFVSLDSSSDSAKSNNPPLLLVHGFGASIPHWRRNIKTLSENYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLDEVVQKPTVLIGNSVGSLACLIAAASGIIRPDSSETLVRGIVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRENLRNILSSVYGNKEAVDDELVEIIREPANAEGALDAFVSIVTGPPGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEGVGHCPHDDRPELVHEKLLPWLATL*