AlfalfaGEDB | Msa0612890

M. sativa cultivar zhongmu-4 / Msa0612890

KEGG: K00512|K07408|K07418|K11868
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612890	XP_013457073.1	91.969	523	40	2	1	523	1	521	0.0	985

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612890	sp\|A0A068Q6L2\|C7317_PRUMU	59.722	504	186	6	20	516	21	514	0.0	602

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0612890	0.846502	2.085778e-59	-8.615850e-47
Msa0000610	Msa0612890	0.810721	1.001201e-50	-8.615850e-47
Msa0001040	Msa0612890	0.865175	7.142541e-65	-8.615850e-47
Msa0001510	Msa0612890	0.854062	1.580783e-61	-8.615850e-47
Msa0002110	Msa0612890	0.854828	9.488370e-62	-8.615850e-47
Msa0002690	Msa0612890	0.893570	5.556434e-75	-8.615850e-47
Msa0002700	Msa0612890	0.891003	5.903383e-74	-8.615850e-47
Msa0003340	Msa0612890	0.822256	2.611290e-53	-8.615850e-47
Msa0004180	Msa0612890	0.874475	6.560202e-68	-8.615850e-47
Msa0005190	Msa0612890	0.816649	4.959002e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612890	MtrunA17_Chr4g0047661	91.969	523	40	2	1	523	1	521	0.0	985
Msa0612890	MtrunA17_Chr4g0047641	82.115	520	84	5	8	523	6	520	0.0	872
Msa0612890	MtrunA17_Chr4g0047631	80.497	523	93	4	1	522	1	515	0.0	865
Msa0612890	MtrunA17_Chr4g0047691	78.748	527	100	5	1	523	1	519	0.0	838
Msa0612890	MtrunA17_Chr4g0058231	60.792	505	190	5	20	521	1	500	0.0	644
Msa0612890	MtrunA17_Chr4g0058191	59.880	501	189	5	20	520	1	489	0.0	626
Msa0612890	MtrunA17_Chr6g0472311	59.339	514	201	7	13	519	5	517	0.0	622
Msa0612890	MtrunA17_Chr4g0058201	60.780	487	182	5	36	521	17	495	0.0	619
Msa0612890	MtrunA17_Chr3g0116681	47.809	502	243	5	26	519	13	503	6.43e-168	484
Msa0612890	MtrunA17_Chr4g0058281	44.848	495	260	5	26	512	18	507	8.20e-153	446

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612890	AT3G48270.1	51.374	473	214	4	46	517	29	486	0.0	523
Msa0612890	AT3G48280.1	49.798	494	230	5	27	519	12	488	0.0	519
Msa0612890	AT3G48290.1	51.907	472	211	5	47	517	32	488	3.87e-178	510
Msa0612890	AT3G48310.1	50.847	472	216	4	47	517	31	487	7.23e-178	509
Msa0612890	AT3G48300.1	52.026	469	205	6	50	517	31	480	7.79e-175	502
Msa0612890	AT3G48300.2	52.026	469	205	6	50	517	33	482	8.35e-175	502
Msa0612890	AT3G48290.2	49.197	498	211	6	47	517	32	514	5.08e-172	496
Msa0612890	AT3G48320.1	47.515	503	245	5	16	517	3	487	2.40e-166	480
Msa0612890	AT4G13310.1	48.523	474	232	4	47	517	31	495	4.51e-163	472
Msa0612890	AT5G24950.1	47.170	477	239	5	40	513	24	490	1.18e-159	463

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Find 129 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACCGTGAAGGAAG+AGG	0.525851	4_2:+61438267	Msa0612890:CDS
AAAGATACCGTGAAGGAAGA+GGG	0.613236	4_2:+61438268	Msa0612890:CDS
AAATCTTGGAGTGATCTGTG+AGG	0.718248	4_2:-61437850	None:intergenic
AACAGTTCAATAGATTTCAA+AGG	0.530471	4_2:+61439380	Msa0612890:CDS
AAGAAAAGAGAAAGAAATAG+TGG	0.439676	4_2:-61437724	None:intergenic
AAGAATGATGGATCATATTA+AGG	0.275873	4_2:+61438155	Msa0612890:CDS
AAGAGAACTTGGCAGAAAGG+TGG	0.637502	4_2:-61437653	None:intergenic
AAGAGATAGACCACTTTGAT+TGG	0.394594	4_2:-61439912	None:intergenic
AAGAGGGATGAAATTTCAGG+AGG	0.661171	4_2:+61438284	Msa0612890:CDS
AAGATAGTGAAGAACAACAT+AGG	0.521773	4_2:-61437700	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCATGTGAAAGAGAACT+TGG	-	chr4_2:61437667-61437686	None:intergenic	30.0%
AGATAGTGAAGAACAACATA+GGG	-	chr4_2:61437702-61437721	None:intergenic	30.0%
AAGATAGTGAAGAACAACAT+AGG	-	chr4_2:61437703-61437722	None:intergenic	30.0%
CATATTTGTGAGCTAAATCT+TGG	-	chr4_2:61437867-61437886	None:intergenic	30.0%
TAATGATATAGTATGTAGGG+TGG	+	chr4_2:61438236-61438255	Msa0612890:CDS	30.0%
ATATAGGAGACTATATACCT+TGG	+	chr4_2:61438343-61438362	Msa0612890:CDS	30.0%
TTATAGCAAAGCAGAAAAAG+TGG	+	chr4_2:61438395-61438414	Msa0612890:CDS	30.0%
GTACAGTATTATTATTTGGC+TGG	+	chr4_2:61438633-61438652	Msa0612890:intron	30.0%
TTTACTTTGTGGAATTACTG+AGG	+	chr4_2:61438804-61438823	Msa0612890:intron	30.0%
TCATGTAACTGAAGAAGATT+TGG	+	chr4_2:61439145-61439164	Msa0612890:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	61437525	61439947	61437525	ID=Msa0612890;Name=Msa0612890
chr4_2	mRNA	61437525	61439947	61437525	ID=Msa0612890-mRNA-1;Parent=Msa0612890;Name=Msa0612890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=124\|1\|1\|1\|1\|1\|2\|313\|523
chr4_2	exon	61437525	61438602	61437525	ID=Msa0612890-mRNA-1:exon:16701;Parent=Msa0612890-mRNA-1
chr4_2	exon	61439017	61439947	61439017	ID=Msa0612890-mRNA-1:exon:16702;Parent=Msa0612890-mRNA-1
chr4_2	five_prime_UTR	61437525	61437648	61437525	ID=Msa0612890-mRNA-1:five_prime_utr;Parent=Msa0612890-mRNA-1
chr4_2	CDS	61437649	61438602	61437649	ID=Msa0612890-mRNA-1:cds;Parent=Msa0612890-mRNA-1
chr4_2	CDS	61439017	61439634	61439017	ID=Msa0612890-mRNA-1:cds;Parent=Msa0612890-mRNA-1
chr4_2	three_prime_UTR	61439635	61439947	61439635	ID=Msa0612890-mRNA-1:three_prime_utr;Parent=Msa0612890-mRNA-1

Gene Sequence

>Msa0612890

ATGTCCACCTTTCTGCCAAGTTCTCTTTCACATGAAATCTTCTCTTCATTCCCTATGTTGTTCTTCACTATCTTTCCACTATTTCTTTCTCTTTTCTTCATCATCAAATGGTATTTTAATAACTCTGTCACCACAAAAAACTTACCTCCTTCACCTCCAAGAATTCCTCTACTTGGTAACCTTCATCAAATTGGTGTGTCCCCTCACAGATCACTCCAAGATTTAGCTCACAAATATGGCCCTTTAATGCTTCTTTATTTTGGGAAGGTTCCAGTTCTTGTGGTTTCCTCTGCTGATGCAGCAAGAAAAGTAATGAAAACTCTTGACTTAGTCTTCTGTGATAGGCCACAACTTAAAATCTTTGATATCCTTTTATACAGTTCCAAAGATGTAGCAAGTTGTGCATATGGTGAGTATTGGAGACAAGTAAGGAGTCTCAGTGTGTTACACCTTCTAAGTAACAAAAGAGTTCGATCTTACCGACGTGTTAGAGAGGAAGAAACTTTAAGAATGATGGATCATATTAAGGAGGTTTCTTCTTCTGACTCGTCGCCCTTGAATTTAACCGAGTTGTGCTCTACAATTACTAATGATATAGTATGTAGGGTGGCTCTGGGAAAAAGATACCGTGAAGGAAGAGGGATGAAATTTCAGGAGGTGTTGTCGGAGTTTGAGGAGTTATTGGGTAGTTTATATATAGGAGACTATATACCTTGGCTTGATTGGTTGGGAAAAGTAAATGGTTTTTATAGCAAAGCAGAAAAAGTGGCCATACAATTGGATGAATTTTTTGAGGAAGTAATTGAGGAGCACATTAGTGGTGGTAGATCTAATGGAGATGTTGGTGCTGAAAATGAAGAGCATAGTGATTTTGTGGATGTTTTGCTTTCGCTTCAAAAGACCAATGCTATGGGATTCCCAATTGATAGAACTTCAATCAAGGCTTTGATACTGGACATGTTTGCTGCAGGTACTGATACTACCTACACAGTTCTAGAATGGGCAATGACAGAACTTTTAAGAGACCAAACTGTGATGCATAAATTGCAAGATGAGGTGAGAACTGTGGTTGGTAACAGAACTCATGTAACTGAAGAAGATTTGGTTAACATGAACTACTTGAAAGCTGTGATCAAAGAAACTCTTCGCCTCCATGCACCAGTTCCGTTGTTAGTCCCTCGAAAATCAATGGAAGATATCAAAATAAATGGCTATGACATTGCAGCTGGTACACAAGTAATAGTCAATGCTTGGGCTATTTCTAGAGATCCTTCAATTTGGGAAGAACCTCTAGAGTTTAAACCAGAAAGGTTTATGAACAGTTCAATAGATTTCAAAGGATTGGATTTTGAACTTATTCCATTTGGAGCAGGAAGGAGAGGTTGTCCTGGAGTGTTGTTTGCTGTTGCTGTGAATGAATTGGTGCTAGCAAACCTTGTTCATCAATTTGATTGGAAATTGCCTGATGGAGTTGCTGAGAAGGATTTGGACATGTCTGAAACTAATGGCCTTAGTTGCCATAGAAAATACCCTCTCCTTGCAGTAGCTACTAAATATGAGAAAAATGAATGA

Protein sequence

>Msa0612890

MSTFLPSSLSHEIFSSFPMLFFTIFPLFLSLFFIIKWYFNNSVTTKNLPPSPPRIPLLGNLHQIGVSPHRSLQDLAHKYGPLMLLYFGKVPVLVVSSADAARKVMKTLDLVFCDRPQLKIFDILLYSSKDVASCAYGEYWRQVRSLSVLHLLSNKRVRSYRRVREEETLRMMDHIKEVSSSDSSPLNLTELCSTITNDIVCRVALGKRYREGRGMKFQEVLSEFEELLGSLYIGDYIPWLDWLGKVNGFYSKAEKVAIQLDEFFEEVIEEHISGGRSNGDVGAENEEHSDFVDVLLSLQKTNAMGFPIDRTSIKALILDMFAAGTDTTYTVLEWAMTELLRDQTVMHKLQDEVRTVVGNRTHVTEEDLVNMNYLKAVIKETLRLHAPVPLLVPRKSMEDIKINGYDIAAGTQVIVNAWAISRDPSIWEEPLEFKPERFMNSSIDFKGLDFELIPFGAGRRGCPGVLFAVAVNELVLANLVHQFDWKLPDGVAEKDLDMSETNGLSCHRKYPLLAVATKYEKNE*