AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0227970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227970 MtrunA17_Chr1g0188361 96.212 396 8 3 1 395 1 390 0.0 763
Msa0227970 MtrunA17_Chr5g0423381 34.967 306 168 9 86 385 50 330 1.04e-52 179
Msa0227970 MtrunA17_Chr8g0372991 36.313 358 189 13 47 395 38 365 3.11e-51 176
Msa0227970 MtrunA17_Chr4g0018641 31.190 311 172 12 89 392 398 673 4.21e-25 107
Msa0227970 MtrunA17_Chr3g0090521 24.507 355 200 13 84 395 121 450 6.45e-22 97.4
Msa0227970 MtrunA17_Chr4g0003831 25.256 293 175 10 124 395 373 642 6.19e-16 79.7
Msa0227970 MtrunA17_Chr2g0332311 24.573 293 179 9 123 395 376 646 1.40e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227970 AT5G38520.1 68.788 330 93 3 68 395 38 359 1.15e-158 451
Msa0227970 AT5G38520.2 67.560 336 99 3 68 395 38 371 5.60e-158 449
Msa0227970 AT5G19850.1 34.118 340 185 10 57 385 38 349 8.56e-55 185
Msa0227970 AT4G36530.1 33.333 342 176 14 67 393 2 306 3.57e-46 161
Msa0227970 AT4G36530.2 31.662 379 201 16 30 393 28 363 1.33e-45 161
Msa0227970 AT5G13800.2 25.542 415 220 16 44 395 26 414 9.66e-22 97.1
Msa0227970 AT5G13800.1 25.542 415 220 16 44 395 26 414 9.66e-22 97.1
Msa0227970 AT5G13800.3 25.542 415 220 16 44 395 49 437 1.23e-21 97.1
Msa0227970 AT5G13800.4 25.558 403 211 16 44 383 26 402 1.53e-20 93.2
Msa0227970 AT4G25290.1 28.182 330 177 12 81 395 386 670 4.09e-20 92.8
Msa0227970 AT4G12830.1 36.441 118 65 3 112 226 125 235 4.58e-14 73.6
Msa0227970 AT1G80280.1 24.742 291 179 10 123 395 374 642 7.59e-14 73.6

Find 102 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTGATACAACGTATT+TGG 0.096787 2_1:+79320746 None:intergenic
GCTATTGATCTTCTTGGTTT+TGG 0.163333 2_1:-79322320 Msa0227970:CDS
TAAAGAAACAAAATAATTTA+TGG 0.207219 2_1:+79323135 None:intergenic
GTTTATGCTATTGATCTTCT+TGG 0.221335 2_1:-79322326 Msa0227970:CDS
ACAGTTGATCTTGGATTTCT+TGG 0.227874 2_1:-79321989 Msa0227970:intron
CACCAATTACAAACTATAAA+AGG 0.236377 2_1:+79320944 None:intergenic
TGTTTCTACCACCATTGTTT+TGG 0.239122 2_1:+79323287 None:intergenic
TGTCTCATTGCTGCTGCTTC+AGG 0.241897 2_1:-79321910 Msa0227970:CDS
TCTCCCCATAAAAGTAAAAT+AGG 0.274171 2_1:+79321175 None:intergenic
GCATTTGTATCAATTGTAAC+AGG 0.286676 2_1:-79321244 Msa0227970:CDS
CTGTTACTTGTCCATGGCTT+TGG 0.291905 2_1:-79323073 Msa0227970:CDS
CTTCTTGATACAACGTATTT+GGG 0.312055 2_1:+79320747 None:intergenic
AAGGTTACGTTCAGAGTTCT+TGG 0.313499 2_1:-79320816 Msa0227970:three_prime_UTR
AATTGATACAAATGCATCTA+AGG 0.330008 2_1:+79321252 None:intergenic
TTGCAGAAGCAATTCCCTTT+TGG 0.333173 2_1:+79321656 None:intergenic
GAGTTCAGTGTATGGAAATA+AGG 0.338288 2_1:-79321514 Msa0227970:CDS
ATTTACACCACCATGTCTAT+TGG 0.339060 2_1:-79320847 Msa0227970:three_prime_UTR
ACAAAGCAATTGTTGATGAT+TGG 0.341853 2_1:-79321729 Msa0227970:CDS
TCAATACAAACAGTTGATCT+TGG 0.347401 2_1:-79321998 Msa0227970:intron
AGTTACTCCTTCCCTTGCTT+TGG 0.349148 2_1:-79321699 Msa0227970:CDS
AAGTAACAGAGGAGGGTTAT+TGG 0.354968 2_1:+79323087 None:intergenic
GGCACCAATTGCACCGGATT+AGG 0.359450 2_1:+79321211 None:intergenic
GATCCCTTTACTCCAATTGA+TGG 0.363586 2_1:-79321148 Msa0227970:CDS
TCAAGTGAAACTCTAGTTAG+AGG 0.364835 2_1:-79321787 Msa0227970:CDS
TAATGATCCTGAAGTTTCTA+TGG 0.365035 2_1:+79323216 None:intergenic
CAGAAGCCAACAGTACTAAT+AGG 0.371016 2_1:-79321955 Msa0227970:CDS
GACACTGTCTGAGAATTATA+CGG 0.378882 2_1:-79322348 Msa0227970:CDS
ACTAGAGTTTCACTTGAATC+TGG 0.383055 2_1:+79321793 None:intergenic
TTTGGTTCCTCAGATCATTA+GGG 0.394374 2_1:-79321296 Msa0227970:intron
ACGAGTGCTGTTCATTCAGT+TGG 0.400022 2_1:-79323430 Msa0227970:CDS
ATTGTGCTATTAAATTGTTC+TGG 0.404463 2_1:-79321763 Msa0227970:CDS
GCTGCTTCCATAGAAACTTC+AGG 0.412435 2_1:-79323223 Msa0227970:CDS
GGTCCATCAATTGGAGTAAA+GGG 0.415428 2_1:+79321145 None:intergenic
GTTCAACTGTTCATGCTTGA+AGG 0.416044 2_1:-79321079 Msa0227970:CDS
CAATGAAGAAGAGTGTTCTT+TGG 0.417111 2_1:+79323337 None:intergenic
GGGGCCTAATCCGGTGCAAT+TGG 0.425981 2_1:-79321215 Msa0227970:CDS
AGGGCCGCCGGGGCCTAATC+CGG 0.428980 2_1:-79321224 Msa0227970:CDS
TCCTCAGATCATTAGGGAAC+CGG 0.429301 2_1:-79321290 Msa0227970:intron
TTTCCAACAGGTCCATCAAT+TGG 0.431388 2_1:+79321136 None:intergenic
TTAAATGCAGAGAGAATTTG+AGG 0.438567 2_1:-79321545 Msa0227970:intron
GAAAGGTTCAACAGCATCAA+TGG 0.438799 2_1:-79323391 Msa0227970:CDS
GAAGAAAAGTACTTTCCAAC+AGG 0.449114 2_1:+79321124 None:intergenic
CGAGTGCTGTTCATTCAGTT+GGG 0.450183 2_1:-79323429 Msa0227970:CDS
ACAGACATCGTAGAAAGAAA+TGG 0.455043 2_1:-79323458 None:intergenic
TTGGTGCTTCCATTCCTCAC+TGG 0.462114 2_1:-79323054 Msa0227970:CDS
TAAAGCAGAAATGTCTTAAG+TGG 0.464903 2_1:-79323177 Msa0227970:CDS
CCTCCTCTGTTACTTGTCCA+TGG 0.474310 2_1:-79323079 Msa0227970:CDS
AGGTTACGTTCAGAGTTCTT+GGG 0.478184 2_1:-79320815 Msa0227970:three_prime_UTR
AAGAGTGTTCTTTGGTGTAG+TGG 0.482090 2_1:+79323345 None:intergenic
AGGTCCATCAATTGGAGTAA+AGG 0.483632 2_1:+79321144 None:intergenic
GACATTGTCCCCATGATGAC+AGG 0.489475 2_1:-79321051 Msa0227970:CDS
TCAATTGTAACAGGGCCGCC+GGG 0.490938 2_1:-79321235 Msa0227970:CDS
ACTCCAATTGATGGACCTGT+TGG 0.491390 2_1:-79321139 Msa0227970:CDS
TTCAACTGTTCATGCTTGAA+GGG 0.491418 2_1:-79321078 Msa0227970:CDS
GAGTTTCCTATTAGTACTGT+TGG 0.496781 2_1:+79321949 None:intergenic
ATCAATTGTAACAGGGCCGC+CGG 0.498322 2_1:-79321236 Msa0227970:CDS
GTACTAATAGGAAACTCTGT+TGG 0.499809 2_1:-79321943 Msa0227970:CDS
CTAATTCAGGCCTGTCATCA+TGG 0.500280 2_1:+79321041 None:intergenic
TTTCGTATACCATGGAAACA+TGG 0.503219 2_1:-79322274 Msa0227970:CDS
CTGTTCATGCTTGAAGGGGT+TGG 0.503540 2_1:-79321073 Msa0227970:CDS
ATGTCTATTGGAAGGAAGAA+AGG 0.507439 2_1:-79320835 Msa0227970:three_prime_UTR
AACATCTTGAGTTCAGTGTA+TGG 0.513396 2_1:-79321522 Msa0227970:CDS
TAATTCAGGCCTGTCATCAT+GGG 0.516079 2_1:+79321042 None:intergenic
GGTTTCTCAAACAACTTGAA+AGG 0.517413 2_1:-79323408 Msa0227970:CDS
AGAAATGTCTTAAGTGGAAG+TGG 0.522801 2_1:-79323171 Msa0227970:CDS
AAAATCAATCAGCCAAAGCA+AGG 0.543664 2_1:+79321687 None:intergenic
GGAGCATCAGATAAGCCACC+AGG 0.544264 2_1:-79322299 Msa0227970:CDS
TACCTCAGCCCATGTTTCCA+TGG 0.544343 2_1:+79322265 None:intergenic
CTTCCATTCCTCACTGGCGT+AGG 0.567976 2_1:-79323048 Msa0227970:intron
AAGGCTCCTTCAGCATTCGC+CGG 0.569196 2_1:+79321271 None:intergenic
CTTCCTTCCAATAGACATGG+TGG 0.571251 2_1:+79320840 None:intergenic
GAATGGAAGCACCAAAGCCA+TGG 0.571641 2_1:+79323062 None:intergenic
AGGGAACCGGCGAATGCTGA+AGG 0.582575 2_1:-79321277 Msa0227970:CDS
TCAGAGTTCTTGGGAAAACA+TGG 0.583064 2_1:-79320806 Msa0227970:three_prime_UTR
TACCATGGAAACATGGGCTG+AGG 0.583191 2_1:-79322267 Msa0227970:intron
GTATGGAAATAAGGAGGCTG+TGG 0.584738 2_1:-79321505 Msa0227970:CDS
ATACCTACGCCAGTGAGGAA+TGG 0.584882 2_1:+79323045 None:intergenic
AATTGCACCGGATTAGGCCC+CGG 0.587167 2_1:+79321217 None:intergenic
ACACCACCATGTCTATTGGA+AGG 0.595153 2_1:-79320843 Msa0227970:three_prime_UTR
AAATCAATCAGCCAAAGCAA+GGG 0.595342 2_1:+79321688 None:intergenic
TGTCTTAAGTGGAAGTGGAA+AGG 0.597275 2_1:-79323166 Msa0227970:CDS
TTCGTATACCATGGAAACAT+GGG 0.598366 2_1:-79322273 Msa0227970:CDS
ATCAACATAATCTATACATG+TGG 0.601133 2_1:+79320888 None:intergenic
GTGCTATTAAATTGTTCTGG+TGG 0.607382 2_1:-79321760 Msa0227970:CDS
TTTCTTCCTTCCAATAGACA+TGG 0.618190 2_1:+79320837 None:intergenic
CAATCAGCCAAAGCAAGGGA+AGG 0.620564 2_1:+79321692 None:intergenic
CATTTGTATCAATTGTAACA+GGG 0.626940 2_1:-79321243 Msa0227970:CDS
GGCTGTGGATGATGAACTCG+TGG 0.631002 2_1:-79321490 Msa0227970:CDS
CATGGACAAGTAACAGAGGA+GGG 0.632484 2_1:+79323080 None:intergenic
CACTTAAGCATCCAAAACAA+TGG 0.634989 2_1:-79323298 Msa0227970:CDS
TCCATGGTATACGAAAAGCC+TGG 0.647873 2_1:+79322281 None:intergenic
TTCAGTGTATGGAAATAAGG+AGG 0.648155 2_1:-79321511 Msa0227970:CDS
CCATGGACAAGTAACAGAGG+AGG 0.649384 2_1:+79323079 None:intergenic
CAATTGTAACAGGGCCGCCG+GGG 0.653302 2_1:-79321234 Msa0227970:CDS
TCAACTGTTCATGCTTGAAG+GGG 0.658262 2_1:-79321077 Msa0227970:CDS
TTAAGCATCCAAAACAATGG+TGG 0.671828 2_1:-79323295 Msa0227970:CDS
AATTCAGGCCTGTCATCATG+GGG 0.687756 2_1:+79321043 None:intergenic
TGCACCGGATTAGGCCCCGG+CGG 0.694178 2_1:+79321220 None:intergenic
ATGGTATACGAAAAGCCTGG+TGG 0.725251 2_1:+79322284 None:intergenic
AAGCCATGGACAAGTAACAG+AGG 0.730393 2_1:+79323076 None:intergenic
CAAACATACCTACGCCAGTG+AGG 0.731840 2_1:+79323040 None:intergenic
TGTGGATGATGAACTCGTGG+AGG 0.755163 2_1:-79321487 Msa0227970:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAACAAAATAATTTA+TGG + chr2_1:79321033-79321052 None:intergenic 10.0%
!!! TTCTTTTACATTTAATTTAT+AGG + chr2_1:79323444-79323463 None:intergenic 10.0%
!!! CATAACAAATTTAACTTATA+CGG - chr2_1:79322136-79322155 Msa0227970:intron 15.0%
!!! ACTTATAAGAATTCATATTT+TGG - chr2_1:79322851-79322870 Msa0227970:intron 15.0%
!!! ATACATTATTTCTGAATACA+TGG + chr2_1:79321374-79321393 None:intergenic 20.0%
!!! ATAAAATTGTGACATTTTAG+AGG + chr2_1:79321711-79321730 None:intergenic 20.0%
!!! TCAACTATTTTTCTCAAAAT+TGG - chr2_1:79321755-79321774 Msa0227970:CDS 20.0%
!!! CAACTATTTTTCTCAAAATT+GGG - chr2_1:79321756-79321775 Msa0227970:CDS 20.0%
!!! TCTCTAAAATAGTTATATTG+CGG + chr2_1:79321999-79322018 None:intergenic 20.0%
!!! TGATTTTTTATTGAACCAAA+AGG - chr2_1:79322494-79322513 Msa0227970:intron 20.0%
!!! GATTTTTTATTGAACCAAAA+GGG - chr2_1:79322495-79322514 Msa0227970:intron 20.0%
!! CAAAAAATTTAGGGAAATTA+TGG + chr2_1:79322576-79322595 None:intergenic 20.0%
!!! ATTTCCCTAAATTTTTTGAT+AGG - chr2_1:79322578-79322597 Msa0227970:intron 20.0%
!! GTTTCCTATCAAAAAATTTA+GGG + chr2_1:79322585-79322604 None:intergenic 20.0%
!! TGTTTCCTATCAAAAAATTT+AGG + chr2_1:79322586-79322605 None:intergenic 20.0%
!! AAAAAAATTAATACTCCTTC+CGG + chr2_1:79322814-79322833 None:intergenic 20.0%
!!! AAAATAGGCAATGATATTTT+TGG + chr2_1:79322978-79322997 None:intergenic 20.0%
!!! ATTGCCTATTTTACTTTTAT+GGG - chr2_1:79322986-79323005 Msa0227970:intron 20.0%
!!! AACCTTTTATAGTTTGTAAT+TGG - chr2_1:79323219-79323238 Msa0227970:CDS 20.0%
! AAAATATGAGTTATTGACAG+TGG + chr2_1:79321151-79321170 None:intergenic 25.0%
!! CTTTTAGCAAAAAAAATGAG+TGG + chr2_1:79321190-79321209 None:intergenic 25.0%
! AGAATATAAAGTGACAAACA+AGG + chr2_1:79321223-79321242 None:intergenic 25.0%
! AATTGTAAAAGAAACTGATG+AGG - chr2_1:79321463-79321482 Msa0227970:intron 25.0%
! TAGATCCAATATTATCAACA+AGG - chr2_1:79321569-79321588 Msa0227970:intron 25.0%
!! ACTCTATTTCTCAATCATAA+AGG + chr2_1:79321615-79321634 None:intergenic 25.0%
! TTTAATGATGTCGAACTAAA+AGG + chr2_1:79321938-79321957 None:intergenic 25.0%
!! ATTGTGCTATTAAATTGTTC+TGG - chr2_1:79322402-79322421 Msa0227970:intron 25.0%
! AAAGGTAATCTCTTTAGATT+AGG - chr2_1:79322550-79322569 Msa0227970:intron 25.0%
!! ATTTTTGTCTACAAAACCAA+CGG + chr2_1:79322753-79322772 None:intergenic 25.0%
! AATTGATACAAATGCATCTA+AGG + chr2_1:79322916-79322935 None:intergenic 25.0%
! CATTTGTATCAATTGTAACA+GGG - chr2_1:79322922-79322941 Msa0227970:intron 25.0%
!!! CATTGCCTATTTTACTTTTA+TGG - chr2_1:79322985-79323004 Msa0227970:intron 25.0%
!!! TTGCCTATTTTACTTTTATG+GGG - chr2_1:79322987-79323006 Msa0227970:intron 25.0%
!!! AATTTTTCATGGACTAATTC+AGG + chr2_1:79323140-79323159 None:intergenic 25.0%
! CACCAATTACAAACTATAAA+AGG + chr2_1:79323224-79323243 None:intergenic 25.0%
! ATCAACATAATCTATACATG+TGG + chr2_1:79323280-79323299 None:intergenic 25.0%
TAATGATCCTGAAGTTTCTA+TGG + chr2_1:79320952-79320971 None:intergenic 30.0%
TAAAGCAGAAATGTCTTAAG+TGG - chr2_1:79320988-79321007 Msa0227970:exon 30.0%
AGTATAATTAACTTCCGCTT+AGG + chr2_1:79321313-79321332 None:intergenic 30.0%
AAGCGGAAGTTAATTATACT+AGG - chr2_1:79321313-79321332 Msa0227970:intron 30.0%
!! AACAGCCTTGTTGATAATAT+TGG + chr2_1:79321577-79321596 None:intergenic 30.0%
!!! AGGCTGTTATTTTAACTACA+TGG - chr2_1:79321589-79321608 Msa0227970:intron 30.0%
!!! TCAACCTTGTTTTAACTACA+TGG + chr2_1:79321673-79321692 None:intergenic 30.0%
! TTCTCAAAATTGGGTTGTAA+AGG - chr2_1:79321765-79321784 Msa0227970:CDS 30.0%
GTTTATGCTATTGATCTTCT+TGG - chr2_1:79321839-79321858 Msa0227970:intron 30.0%
CTTGATATTTAGGCAAAATG+TGG + chr2_1:79322054-79322073 None:intergenic 30.0%
! CACATTTTGCCTAAATATCA+AGG - chr2_1:79322052-79322071 Msa0227970:intron 30.0%
TGATGCAAACCTTGATATTT+AGG + chr2_1:79322064-79322083 None:intergenic 30.0%
TCAATACAAACAGTTGATCT+TGG - chr2_1:79322167-79322186 Msa0227970:intron 30.0%
!! ACAAAGCAATTGTTGATGAT+TGG - chr2_1:79322436-79322455 Msa0227970:intron 30.0%
!! TTTTTGAGCGTGTTAAACAA+AGG - chr2_1:79322532-79322551 Msa0227970:intron 30.0%
TTAAATGCAGAGAGAATTTG+AGG - chr2_1:79322620-79322639 Msa0227970:intron 30.0%
TACAAAACCAACGGTTAAAA+AGG + chr2_1:79322744-79322763 None:intergenic 30.0%
!!! TTGTCGTTTTCAAAGTTCAA+TGG - chr2_1:79322783-79322802 Msa0227970:intron 30.0%
GCATTTGTATCAATTGTAAC+AGG - chr2_1:79322921-79322940 Msa0227970:intron 30.0%
TCTCCCCATAAAAGTAAAAT+AGG + chr2_1:79322993-79323012 None:intergenic 30.0%
! TGAACATTTTCTTGTTGAGA+AGG + chr2_1:79323071-79323090 None:intergenic 30.0%
! ATATGTGACAGTTTTTCATG+AGG + chr2_1:79323254-79323273 None:intergenic 30.0%
CTTCTTGATACAACGTATTT+GGG + chr2_1:79323421-79323440 None:intergenic 30.0%
GGTTTCTCAAACAACTTGAA+AGG - chr2_1:79320757-79320776 Msa0227970:three_prime_UTR 35.0%
!! CAATGAAGAAGAGTGTTCTT+TGG + chr2_1:79320831-79320850 None:intergenic 35.0%
! TTTTGGATGCTTAAGTGGTT+TGG + chr2_1:79320864-79320883 None:intergenic 35.0%
!!! CATTGTTTTGGATGCTTAAG+TGG + chr2_1:79320869-79320888 None:intergenic 35.0%
CACTTAAGCATCCAAAACAA+TGG - chr2_1:79320867-79320886 Msa0227970:three_prime_UTR 35.0%
TTAAGCATCCAAAACAATGG+TGG - chr2_1:79320870-79320889 Msa0227970:three_prime_UTR 35.0%
!! TGTTTCTACCACCATTGTTT+TGG + chr2_1:79320881-79320900 None:intergenic 35.0%
AGAAATGTCTTAAGTGGAAG+TGG - chr2_1:79320994-79321013 Msa0227970:exon 35.0%
AAATGAGTGGATGAGAATTG+TGG + chr2_1:79321177-79321196 None:intergenic 35.0%
GAAATGAATTAGTGCCTAAG+TGG - chr2_1:79321335-79321354 Msa0227970:intron 35.0%
ACGTACATGATTGAGAAGAA+AGG + chr2_1:79321650-79321669 None:intergenic 35.0%
ACGTCCATGTAGTTAAAACA+AGG - chr2_1:79321666-79321685 Msa0227970:CDS 35.0%
!! TTGTGACATTTTAGAGGCAT+CGG + chr2_1:79321705-79321724 None:intergenic 35.0%
GACACTGTCTGAGAATTATA+CGG - chr2_1:79321817-79321836 Msa0227970:intron 35.0%
! GCTATTGATCTTCTTGGTTT+TGG - chr2_1:79321845-79321864 Msa0227970:intron 35.0%
TTTCGTATACCATGGAAACA+TGG - chr2_1:79321891-79321910 Msa0227970:intron 35.0%
TTCGTATACCATGGAAACAT+GGG - chr2_1:79321892-79321911 Msa0227970:intron 35.0%
TTGTAGTTTGGACTGCAAAT+TGG + chr2_1:79321970-79321989 None:intergenic 35.0%
CTGCATTGTAACTGTAATTG+CGG - chr2_1:79322028-79322047 Msa0227970:intron 35.0%
ACAGTTGATCTTGGATTTCT+TGG - chr2_1:79322176-79322195 Msa0227970:intron 35.0%
GAGTTTCCTATTAGTACTGT+TGG + chr2_1:79322219-79322238 None:intergenic 35.0%
GTACTAATAGGAAACTCTGT+TGG - chr2_1:79322222-79322241 Msa0227970:intron 35.0%
ACTAGAGTTTCACTTGAATC+TGG + chr2_1:79322375-79322394 None:intergenic 35.0%
TCAAGTGAAACTCTAGTTAG+AGG - chr2_1:79322378-79322397 Msa0227970:intron 35.0%
! GTGCTATTAAATTGTTCTGG+TGG - chr2_1:79322405-79322424 Msa0227970:intron 35.0%
AAATCAATCAGCCAAAGCAA+GGG + chr2_1:79322480-79322499 None:intergenic 35.0%
AAAATCAATCAGCCAAAGCA+AGG + chr2_1:79322481-79322500 None:intergenic 35.0%
AACATCTTGAGTTCAGTGTA+TGG - chr2_1:79322643-79322662 Msa0227970:intron 35.0%
GAGTTCAGTGTATGGAAATA+AGG - chr2_1:79322651-79322670 Msa0227970:intron 35.0%
TTCAGTGTATGGAAATAAGG+AGG - chr2_1:79322654-79322673 Msa0227970:intron 35.0%
TCAAAGTTCAATGGAATCAC+CGG - chr2_1:79322792-79322811 Msa0227970:intron 35.0%
!!! TTTTGGTTCCTCAGATCATT+AGG - chr2_1:79322868-79322887 Msa0227970:intron 35.0%
! TTTGGTTCCTCAGATCATTA+GGG - chr2_1:79322869-79322888 Msa0227970:intron 35.0%
!! GAAGAAAAGTACTTTCCAAC+AGG + chr2_1:79323044-79323063 None:intergenic 35.0%
TTCAACTGTTCATGCTTGAA+GGG - chr2_1:79323087-79323106 Msa0227970:CDS 35.0%
TCCATGAAAAATTGCTTCCA+TGG - chr2_1:79323147-79323166 Msa0227970:CDS 35.0%
! ACCATGGAAGCAATTTTTCA+TGG + chr2_1:79323151-79323170 None:intergenic 35.0%
TGAAAAATTGCTTCCATGGT+TGG - chr2_1:79323151-79323170 Msa0227970:CDS 35.0%
!! TTTTAAAGAGTTGCCAACCA+TGG + chr2_1:79323167-79323186 None:intergenic 35.0%
ATTTACACCACCATGTCTAT+TGG - chr2_1:79323318-79323337 Msa0227970:CDS 35.0%
TTTCTTCCTTCCAATAGACA+TGG + chr2_1:79323331-79323350 None:intergenic 35.0%
ATGTCTATTGGAAGGAAGAA+AGG - chr2_1:79323330-79323349 Msa0227970:CDS 35.0%
GCTTCTTGATACAACGTATT+TGG + chr2_1:79323422-79323441 None:intergenic 35.0%
GAAAGGTTCAACAGCATCAA+TGG - chr2_1:79320774-79320793 Msa0227970:three_prime_UTR 40.0%
! GGTTTTTGTGGATAGGAACA+AGG + chr2_1:79320802-79320821 None:intergenic 40.0%
! GTGTAGTGGTTTTTGTGGAT+AGG + chr2_1:79320809-79320828 None:intergenic 40.0%
!! CTTTGGTGTAGTGGTTTTTG+TGG + chr2_1:79320814-79320833 None:intergenic 40.0%
!! AAGAGTGTTCTTTGGTGTAG+TGG + chr2_1:79320823-79320842 None:intergenic 40.0%
TGTCTTAAGTGGAAGTGGAA+AGG - chr2_1:79320999-79321018 Msa0227970:exon 40.0%
AAGTAACAGAGGAGGGTTAT+TGG + chr2_1:79321081-79321100 None:intergenic 40.0%
!! TGTGCATTTTAGTGCCTAAG+CGG - chr2_1:79321296-79321315 Msa0227970:intron 40.0%
GGCATCATCATTTATCTGAC+AGG - chr2_1:79321786-79321805 Msa0227970:CDS 40.0%
ACAGTTCTTAATCGCAGTTG+CGG + chr2_1:79322102-79322121 None:intergenic 40.0%
CAGAAGCCAACAGTACTAAT+AGG - chr2_1:79322210-79322229 Msa0227970:intron 40.0%
! TTGCAGAAGCAATTCCCTTT+TGG + chr2_1:79322512-79322531 None:intergenic 40.0%
GAACTCGTGGAGGTAAATTA+AGG - chr2_1:79322688-79322707 Msa0227970:intron 40.0%
! CTTCGTTCCTTTTTAACCGT+TGG - chr2_1:79322734-79322753 Msa0227970:intron 40.0%
!!! ATTTTTGGCACCAATTGCAC+CGG + chr2_1:79322963-79322982 None:intergenic 40.0%
GATCCCTTTACTCCAATTGA+TGG - chr2_1:79323017-79323036 Msa0227970:intron 40.0%
GGTCCATCAATTGGAGTAAA+GGG + chr2_1:79323023-79323042 None:intergenic 40.0%
AGGTCCATCAATTGGAGTAA+AGG + chr2_1:79323024-79323043 None:intergenic 40.0%
TTTCCAACAGGTCCATCAAT+TGG + chr2_1:79323032-79323051 None:intergenic 40.0%
GTTCAACTGTTCATGCTTGA+AGG - chr2_1:79323086-79323105 Msa0227970:CDS 40.0%
TCAACTGTTCATGCTTGAAG+GGG - chr2_1:79323088-79323107 Msa0227970:CDS 40.0%
TAATTCAGGCCTGTCATCAT+GGG + chr2_1:79323126-79323145 None:intergenic 40.0%
AAGGTTACGTTCAGAGTTCT+TGG - chr2_1:79323349-79323368 Msa0227970:CDS 40.0%
AGGTTACGTTCAGAGTTCTT+GGG - chr2_1:79323350-79323369 Msa0227970:CDS 40.0%
TCAGAGTTCTTGGGAAAACA+TGG - chr2_1:79323359-79323378 Msa0227970:CDS 40.0%
! ACGAGTGCTGTTCATTCAGT+TGG - chr2_1:79320735-79320754 Msa0227970:three_prime_UTR 45.0%
! CGAGTGCTGTTCATTCAGTT+GGG - chr2_1:79320736-79320755 Msa0227970:three_prime_UTR 45.0%
GCTGCTTCCATAGAAACTTC+AGG - chr2_1:79320942-79320961 Msa0227970:three_prime_UTR 45.0%
CATGGACAAGTAACAGAGGA+GGG + chr2_1:79321088-79321107 None:intergenic 45.0%
AAGCCATGGACAAGTAACAG+AGG + chr2_1:79321092-79321111 None:intergenic 45.0%
! CTGTTACTTGTCCATGGCTT+TGG - chr2_1:79321092-79321111 Msa0227970:CDS 45.0%
GACGTGATTATGCACCACTT+AGG + chr2_1:79321352-79321371 None:intergenic 45.0%
ATGGTATACGAAAAGCCTGG+TGG + chr2_1:79321884-79321903 None:intergenic 45.0%
! ACCAGGCTTTTCGTATACCA+TGG - chr2_1:79321883-79321902 Msa0227970:intron 45.0%
TCCATGGTATACGAAAAGCC+TGG + chr2_1:79321887-79321906 None:intergenic 45.0%
! TGGGCTGAGGTATTTGTCTA+AGG - chr2_1:79321911-79321930 Msa0227970:CDS 45.0%
TTGCGGCTGCAATTGTAGTT+TGG + chr2_1:79321982-79322001 None:intergenic 45.0%
AGTTACTCCTTCCCTTGCTT+TGG - chr2_1:79322466-79322485 Msa0227970:intron 45.0%
GTATGGAAATAAGGAGGCTG+TGG - chr2_1:79322660-79322679 Msa0227970:intron 45.0%
AGTTCAATGGAATCACCGGA+AGG - chr2_1:79322796-79322815 Msa0227970:intron 45.0%
TCCTCAGATCATTAGGGAAC+CGG - chr2_1:79322875-79322894 Msa0227970:intron 45.0%
! ACTCCAATTGATGGACCTGT+TGG - chr2_1:79323026-79323045 Msa0227970:intron 45.0%
AATTCAGGCCTGTCATCATG+GGG + chr2_1:79323125-79323144 None:intergenic 45.0%
CTAATTCAGGCCTGTCATCA+TGG + chr2_1:79323127-79323146 None:intergenic 45.0%
ACACCACCATGTCTATTGGA+AGG - chr2_1:79323322-79323341 Msa0227970:CDS 45.0%
CTTCCTTCCAATAGACATGG+TGG + chr2_1:79323328-79323347 None:intergenic 45.0%
CCATGGACAAGTAACAGAGG+AGG + chr2_1:79321089-79321108 None:intergenic 50.0%
! CCTCCTCTGTTACTTGTCCA+TGG - chr2_1:79321086-79321105 Msa0227970:CDS 50.0%
!! GAATGGAAGCACCAAAGCCA+TGG + chr2_1:79321106-79321125 None:intergenic 50.0%
! TTGGTGCTTCCATTCCTCAC+TGG - chr2_1:79321111-79321130 Msa0227970:CDS 50.0%
ATACCTACGCCAGTGAGGAA+TGG + chr2_1:79321123-79321142 None:intergenic 50.0%
CAAACATACCTACGCCAGTG+AGG + chr2_1:79321128-79321147 None:intergenic 50.0%
! TACCATGGAAACATGGGCTG+AGG - chr2_1:79321898-79321917 Msa0227970:intron 50.0%
TACCTCAGCCCATGTTTCCA+TGG + chr2_1:79321903-79321922 None:intergenic 50.0%
! TGTCTCATTGCTGCTGCTTC+AGG - chr2_1:79322255-79322274 Msa0227970:intron 50.0%
CAATCAGCCAAAGCAAGGGA+AGG + chr2_1:79322476-79322495 None:intergenic 50.0%
TGTGGATGATGAACTCGTGG+AGG - chr2_1:79322678-79322697 Msa0227970:intron 50.0%
ATCAATTGTAACAGGGCCGC+CGG - chr2_1:79322929-79322948 Msa0227970:intron 50.0%
CTGTTCATGCTTGAAGGGGT+TGG - chr2_1:79323092-79323111 Msa0227970:CDS 50.0%
GACATTGTCCCCATGATGAC+AGG - chr2_1:79323114-79323133 Msa0227970:CDS 50.0%
CTTCCATTCCTCACTGGCGT+AGG - chr2_1:79321117-79321136 Msa0227970:CDS 55.0%
! GGAGCATCAGATAAGCCACC+AGG - chr2_1:79321866-79321885 Msa0227970:intron 55.0%
GGCTGTGGATGATGAACTCG+TGG - chr2_1:79322675-79322694 Msa0227970:intron 55.0%
! GCCGGTTCCCTAATGATCTG+AGG + chr2_1:79322879-79322898 None:intergenic 55.0%
AAGGCTCCTTCAGCATTCGC+CGG + chr2_1:79322897-79322916 None:intergenic 55.0%
TCAATTGTAACAGGGCCGCC+GGG - chr2_1:79322930-79322949 Msa0227970:intron 55.0%
! AATTGCACCGGATTAGGCCC+CGG + chr2_1:79322951-79322970 None:intergenic 55.0%
GGCACCAATTGCACCGGATT+AGG + chr2_1:79322957-79322976 None:intergenic 55.0%
AGGGAACCGGCGAATGCTGA+AGG - chr2_1:79322888-79322907 Msa0227970:intron 60.0%
CAATTGTAACAGGGCCGCCG+GGG - chr2_1:79322931-79322950 Msa0227970:intron 60.0%
GGGGCCTAATCCGGTGCAAT+TGG - chr2_1:79322950-79322969 Msa0227970:intron 60.0%
! TGCACCGGATTAGGCCCCGG+CGG + chr2_1:79322948-79322967 None:intergenic 70.0%
AGGGCCGCCGGGGCCTAATC+CGG - chr2_1:79322941-79322960 Msa0227970:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 79320719 79323468 79320719 ID=Msa0227970;Name=Msa0227970
chr2_1 mRNA 79320719 79323468 79320719 ID=Msa0227970-mRNA-1;Parent=Msa0227970;Name=Msa0227970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=7|1|1|1|1|1|6|284|395
chr2_1 exon 79320719 79321305 79320719 ID=Msa0227970-mRNA-1:exon:24141;Parent=Msa0227970-mRNA-1
chr2_1 exon 79321488 79321557 79321488 ID=Msa0227970-mRNA-1:exon:24140;Parent=Msa0227970-mRNA-1
chr2_1 exon 79321634 79321822 79321634 ID=Msa0227970-mRNA-1:exon:24139;Parent=Msa0227970-mRNA-1
chr2_1 exon 79321907 79322007 79321907 ID=Msa0227970-mRNA-1:exon:24138;Parent=Msa0227970-mRNA-1
chr2_1 exon 79322268 79322379 79322268 ID=Msa0227970-mRNA-1:exon:24137;Parent=Msa0227970-mRNA-1
chr2_1 exon 79323049 79323468 79323049 ID=Msa0227970-mRNA-1:exon:24136;Parent=Msa0227970-mRNA-1
chr2_1 five_prime_UTR 79323462 79323468 79323462 ID=Msa0227970-mRNA-1:five_prime_utr;Parent=Msa0227970-mRNA-1
chr2_1 CDS 79323049 79323461 79323049 ID=Msa0227970-mRNA-1:cds;Parent=Msa0227970-mRNA-1
chr2_1 CDS 79322268 79322379 79322268 ID=Msa0227970-mRNA-1:cds;Parent=Msa0227970-mRNA-1
chr2_1 CDS 79321907 79322007 79321907 ID=Msa0227970-mRNA-1:cds;Parent=Msa0227970-mRNA-1
chr2_1 CDS 79321634 79321822 79321634 ID=Msa0227970-mRNA-1:cds;Parent=Msa0227970-mRNA-1
chr2_1 CDS 79321488 79321557 79321488 ID=Msa0227970-mRNA-1:cds;Parent=Msa0227970-mRNA-1
chr2_1 CDS 79321003 79321305 79321003 ID=Msa0227970-mRNA-1:cds;Parent=Msa0227970-mRNA-1
chr2_1 three_prime_UTR 79320719 79321002 79320719 ID=Msa0227970-mRNA-1:three_prime_utr;Parent=Msa0227970-mRNA-1
Gene Sequence

>Msa0227970

ATGGAAGTGACGAGTGCTGTTCATTCAGTTGGGTTTCTCAAACAACTTGAAAGGTTCAACAGCATCAATGGATCCTTGTTCCTATCCACAAAAACCACTACACCAAAGAACACTCTTCTTCATTGTTATCTTCATCCAAACCACTTAAGCATCCAAAACAATGGTGGTAGAAACAGTAAAAGTGTGATCATCAACTCAAACTCAACTTCTTCTTCTGCTGCTTCCATAGAAACTTCAGGATCATTATCTGAAGTTGAAAAGATAAAGCAGAAATGTCTTAAGTGGAAGTGGAAAGGTGAATATTCCATAAATTATTTTGTTTCTTTAGACTCATCTTCAGATTCTGCAAAGTCCAATAACCCTCCTCTGTTACTTGTCCATGGCTTTGGTGCTTCCATTCCTCACTGGCGTAGGAATATCAAGACACTGTCTGAGAATTATACGGTTTATGCTATTGATCTTCTTGGTTTTGGAGCATCAGATAAGCCACCAGGCTTTTCGTATACCATGGAAACATGGGCTGAGTTGATCTTGGATTTCTTGGATGAAGTTGTTCAGAAGCCAACAGTACTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCTGCTTCAGGCATTATTCGACCAGATTCAAGTGAAACTCTAGTTAGAGGAATTGTGCTATTAAATTGTTCTGGTGGCATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGAGAGAATTTGAGGAACATCTTGAGTTCAGTGTATGGAAATAAGGAGGCTGTGGATGATGAACTCGTGGAGATCATTAGGGAACCGGCGAATGCTGAAGGAGCCTTAGATGCATTTGTATCAATTGTAACAGGGCCGCCGGGGCCTAATCCGGTGCAATTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>Msa0227970

MEVTSAVHSVGFLKQLERFNSINGSLFLSTKTTTPKNTLLHCYLHPNHLSIQNNGGRNSKSVIINSNSTSSSAASIETSGSLSEVEKIKQKCLKWKWKGEYSINYFVSLDSSSDSAKSNNPPLLLVHGFGASIPHWRRNIKTLSENYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLDEVVQKPTVLIGNSVGSLACLIAAASGIIRPDSSETLVRGIVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRENLRNILSSVYGNKEAVDDELVEIIREPANAEGALDAFVSIVTGPPGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEGVGHCPHDDRPELVHEKLLPWLATL*