AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530250 MtrunA17_Chr4g0003121 95.039 383 19 0 1 383 1 383 0.0 734
Msa0530250 MtrunA17_Chr8g0337611 34.831 267 163 8 113 375 161 420 2.34e-39 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530250 AT1G52510.1 74.663 371 91 2 14 383 12 380 0.0 584
Msa0530250 AT1G52510.2 80.932 236 45 0 148 383 1 236 4.67e-147 416
Msa0530250 AT4G12830.1 33.243 370 219 12 27 375 17 379 2.94e-42 152

Find 107 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACTAAATTTACAATTTA+AGG 0.020274 4_1:+4292268 None:intergenic
TGTTTATCGGTTACCTTATT+TGG 0.104844 4_1:-4294691 Msa0530250:CDS
AGAAACCTTTATGCTAATTA+AGG 0.223836 4_1:-4292098 Msa0530250:three_prime_UTR
AAATCATCATTCAACCCTTT+TGG 0.239268 4_1:-4298358 Msa0530250:CDS
ATCATCTTGATCATTGCTTT+TGG 0.295202 4_1:+4298381 None:intergenic
CTTTCTAGGTTCCCTCTATA+TGG 0.296099 4_1:-4295039 Msa0530250:intron
GGTCCACTGCTTGCCAAATA+AGG 0.311829 4_1:+4294678 None:intergenic
GAAATAGATAATGGAATGTT+TGG 0.321859 4_1:+4292139 None:intergenic
GCAAGCAGTGGACCTGGATT+TGG 0.327621 4_1:-4294669 Msa0530250:intron
TTAAAACAGTTGGCAGATAC+AGG 0.329464 4_1:-4296457 Msa0530250:intron
GGATTTCTTGTAGGTTCATA+TGG 0.332214 4_1:-4295971 Msa0530250:CDS
ATGGGAGATGAGCTTGTTAA+TGG 0.335320 4_1:+4295890 None:intergenic
AGATGGTTTGTGAGGGAAAC+TGG 0.336712 4_1:-4296776 Msa0530250:intron
CTCCTTAAGGGATTTCTTGT+AGG 0.338401 4_1:-4295980 Msa0530250:intron
GGATGTTTGGAAATAGATAA+TGG 0.339474 4_1:+4292130 None:intergenic
GCGCCTGACTGGATAGGATT+TGG 0.341818 4_1:-4296421 Msa0530250:CDS
TTCTAATAGACTTGGATGTT+TGG 0.343620 4_1:+4292117 None:intergenic
GATTCCTTCAAGGTAAGTTT+TGG 0.346539 4_1:+4292331 None:intergenic
CTCAACCTTAATTAGCATAA+AGG 0.348365 4_1:+4292093 None:intergenic
ATGAAAAGGCTGATGTTTAT+CGG 0.353384 4_1:-4294704 Msa0530250:CDS
CAGAAGGATTTGCAACTAAC+AGG 0.371267 4_1:-4293641 Msa0530250:intron
TATCTTGCTTGAATTCTTCA+AGG 0.386504 4_1:+4295937 None:intergenic
CACAAACCATCTCAACTTCC+CGG 0.388212 4_1:+4296787 None:intergenic
ACAAGCTCATCTCCCATTCC+TGG 0.390715 4_1:-4295884 Msa0530250:CDS
TGAATGGCACTACGGCTTGA+TGG 0.396499 4_1:+4298319 None:intergenic
TGCAAAACAAAGAGCTTCAA+TGG 0.399245 4_1:+4298561 None:intergenic
GATAAACTGCTTGAGGTGTT+GGG 0.402984 4_1:-4296248 Msa0530250:CDS
TACGGATCATATGTAAAATC+CGG 0.408411 4_1:-4296806 Msa0530250:CDS
ATCAAGCTTAAATTGATAGA+AGG 0.411333 4_1:-4292529 Msa0530250:CDS
ACAACCAAAACTTACCTTGA+AGG 0.413525 4_1:-4292335 Msa0530250:three_prime_UTR
TCCACTGCTTTGCGCCTGAC+TGG 0.416258 4_1:-4296432 Msa0530250:CDS
GCTCAGCAATAATAGCATTC+TGG 0.422752 4_1:+4295004 None:intergenic
TAAGCCGATAATGCTTGCTT+GGG 0.422862 4_1:-4292617 Msa0530250:CDS
GGATAAACTGCTTGAGGTGT+TGG 0.429490 4_1:-4296249 Msa0530250:CDS
CCTGCTGAAGCTGGCAATGT+TGG 0.436380 4_1:-4298283 Msa0530250:CDS
AAAGCATCAATAACTTTCTC+AGG 0.439089 4_1:+4292379 None:intergenic
GAAATAGCAAGGTTTAGTGT+TGG 0.443464 4_1:+4298511 None:intergenic
CAAGACAAGGGCAAGGAATA+CGG 0.457995 4_1:-4296824 Msa0530250:CDS
CTGGACTATTTCAGCAGCTA+AGG 0.459053 4_1:-4295865 Msa0530250:intron
ACCTGAACAACTAGGTAAAA+CGG 0.462960 4_1:+4296215 None:intergenic
GTCATATGCCACAAGAAGAT+TGG 0.472192 4_1:-4292501 Msa0530250:intron
ATGTCCTTATTCAAATCAAA+AGG 0.475021 4_1:-4292307 Msa0530250:three_prime_UTR
ATAAGCCGATAATGCTTGCT+TGG 0.478575 4_1:-4292618 Msa0530250:CDS
ATAGCAGAGGAGTTTCAAAA+AGG 0.478884 4_1:-4292565 Msa0530250:CDS
TTATCAGTAACAAATCCAAA+AGG 0.481278 4_1:+4298343 None:intergenic
CCAACATTGCCAGCTTCAGC+AGG 0.482936 4_1:+4298283 None:intergenic
CATTGAAATTCACCATATAG+AGG 0.484860 4_1:+4295027 None:intergenic
TCTGAAAATCCTGCTGAAGC+TGG 0.491648 4_1:-4298292 Msa0530250:CDS
TGCTGAAATAGTCCAGGAAT+GGG 0.492694 4_1:+4295872 None:intergenic
TATTTGGCAAGCAGTGGACC+TGG 0.494712 4_1:-4294675 Msa0530250:CDS
TTAAAAGGAACAAACAACAT+AGG 0.495739 4_1:+4292234 None:intergenic
GCTTGAATTCTTCAAGGCCC+AGG 0.497952 4_1:+4295943 None:intergenic
GTGTAATTAAAACCGTATCC+TGG 0.502859 4_1:+4296379 None:intergenic
ATAAACTGCTTGAGGTGTTG+GGG 0.503042 4_1:-4296247 Msa0530250:CDS
CTGCTGAAATAGTCCAGGAA+TGG 0.505004 4_1:+4295871 None:intergenic
TAAGGACATGGATTCCTTCA+AGG 0.507225 4_1:+4292321 None:intergenic
TGCTTTGCGCCTGACTGGAT+AGG 0.508011 4_1:-4296427 Msa0530250:CDS
GGAACAATTGTATTCCTTCA+CGG 0.510150 4_1:-4296638 Msa0530250:CDS
TTCAGTGACAAGCCACAGCC+AGG 0.513906 4_1:-4296397 Msa0530250:CDS
CATGAACCGCTAGTTATGTT+CGG 0.514713 4_1:-4298611 Msa0530250:five_prime_UTR
TAGGTTCATATGGACTGACC+TGG 0.515329 4_1:-4295961 Msa0530250:CDS
ACTGAAAGTACCGTTGAAGT+TGG 0.517505 4_1:+4293671 None:intergenic
GCTGAGCGGTTTATTGAAAG+AGG 0.524103 4_1:-4294988 Msa0530250:CDS
CTTTAGATACCTGAACAACT+AGG 0.528906 4_1:+4296207 None:intergenic
AAACCAAATCCTATCCAGTC+AGG 0.531111 4_1:+4296418 None:intergenic
AAAGGAGTTCCATGATGCAT+TGG 0.534788 4_1:-4296270 Msa0530250:CDS
TAGTAGTTGAAGAAATAGCA+AGG 0.535867 4_1:+4298500 None:intergenic
TCCAGTCAGGCGCAAAGCAG+TGG 0.540824 4_1:+4296431 None:intergenic
CTTAGCTGCTGAAATAGTCC+AGG 0.545953 4_1:+4295866 None:intergenic
TACTCTCACCAATCTTCTTG+TGG 0.549372 4_1:+4292493 None:intergenic
TTACCTTATTTGGCAAGCAG+TGG 0.551775 4_1:-4294681 Msa0530250:CDS
TATCAGTAACAAATCCAAAA+GGG 0.554155 4_1:+4298344 None:intergenic
CAGACAATTGAATGGCACTA+CGG 0.555154 4_1:+4298311 None:intergenic
ACGGATCATATGTAAAATCC+GGG 0.557018 4_1:-4296805 Msa0530250:CDS
TAAAATCCGGGAAGTTGAGA+TGG 0.557129 4_1:-4296793 Msa0530250:CDS
CTTAAATTGATAGAAGGAGC+TGG 0.557191 4_1:-4292523 Msa0530250:CDS
GCAGTTTATCCAATGCATCA+TGG 0.559609 4_1:+4296261 None:intergenic
GACAAGCCACAGCCAGGATA+CGG 0.563905 4_1:-4296391 Msa0530250:CDS
ATAAAGGTTTCTAATAGACT+TGG 0.566263 4_1:+4292109 None:intergenic
TTATGCTAATTAAGGTTGAG+AGG 0.568594 4_1:-4292090 Msa0530250:three_prime_UTR
CTACCGAGTTGTTATGTCTG+AGG 0.568732 4_1:-4296594 Msa0530250:intron
ATTGCGTTGGCGCTCCGTGA+AGG 0.569256 4_1:+4296624 None:intergenic
TTATGTCACTAACCAAATCC+AGG 0.573861 4_1:+4294657 None:intergenic
TTAAAACCGTATCCTGGCTG+TGG 0.574929 4_1:+4296385 None:intergenic
GCAAGAAAAGCCAACTTCAA+CGG 0.586187 4_1:-4293681 Msa0530250:CDS
TTCCTAGAAAATACAAGACA+AGG 0.589706 4_1:-4296837 Msa0530250:intron
ACTTTCAGTGAAATAGCAGA+AGG 0.592480 4_1:-4293657 Msa0530250:CDS
TAAAACAGTTGGCAGATACA+GGG 0.594371 4_1:-4296456 Msa0530250:intron
CGGTAGCTAAAAGATTGCGT+TGG 0.596770 4_1:+4296611 None:intergenic
TCAAGCACAAGTTCAAGCAG+AGG 0.601190 4_1:-4298451 Msa0530250:CDS
ATTGAAATTCACCATATAGA+GGG 0.601281 4_1:+4295028 None:intergenic
GGAAGTTGAGATGGTTTGTG+AGG 0.602667 4_1:-4296784 Msa0530250:CDS
GAAGTTGAGATGGTTTGTGA+GGG 0.604921 4_1:-4296783 Msa0530250:CDS
AGGTTCATATGGACTGACCT+GGG 0.616385 4_1:-4295960 Msa0530250:CDS
AAGCCGATAATGCTTGCTTG+GGG 0.622310 4_1:-4292616 Msa0530250:CDS
GAAAATACAAGACAAGGGCA+AGG 0.626660 4_1:-4296831 Msa0530250:CDS
CTTGCCACAGTCTATAGCAG+AGG 0.636542 4_1:-4292578 Msa0530250:CDS
TAAACTGCTTGAGGTGTTGG+GGG 0.640200 4_1:-4296246 Msa0530250:CDS
AACATAACTAGCGGTTCATG+TGG 0.642604 4_1:+4298614 None:intergenic
GGGTCAGCAAAGAGTAGACG+AGG 0.650329 4_1:-4296659 Msa0530250:CDS
TGCATTGGATAAACTGCTTG+AGG 0.658755 4_1:-4296255 Msa0530250:CDS
TCCTAGAAAATACAAGACAA+GGG 0.660631 4_1:-4296836 Msa0530250:intron
AACTCCTCTGCTATAGACTG+TGG 0.685327 4_1:+4292574 None:intergenic
ACATAACCGAACATAACTAG+CGG 0.705980 4_1:+4298605 None:intergenic
AGCCGATAATGCTTGCTTGG+GGG 0.706238 4_1:-4292615 Msa0530250:CDS
AGAATGCTATTATTGCTGAG+CGG 0.715274 4_1:-4295002 Msa0530250:CDS
TTACCTCAGACATAACAACT+CGG 0.745197 4_1:+4296591 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATAAGTTTGATTT+TGG - chr4_1:4293008-4293027 Msa0530250:intron 10.0%
!!! GATATTTATACTTTAAAATT+TGG - chr4_1:4297747-4297766 Msa0530250:intron 10.0%
!! ATAATAACAGTTATATGTTT+AGG - chr4_1:4292546-4292565 Msa0530250:CDS 15.0%
!! TGTATTGAACAATTAATTTA+AGG + chr4_1:4292755-4292774 None:intergenic 15.0%
!!! TTTTAGTTAGAATTAGTTTT+GGG - chr4_1:4293201-4293220 Msa0530250:intron 15.0%
!!! TGAAATAAAACTTTGTTATT+AGG + chr4_1:4294145-4294164 None:intergenic 15.0%
!!! AGTATAATTTGATTTATGTT+TGG - chr4_1:4295038-4295057 Msa0530250:intron 15.0%
!! TTTGTAGAAGTAAAAAATAA+GGG + chr4_1:4295445-4295464 None:intergenic 15.0%
!! ATTTGTAGAAGTAAAAAATA+AGG + chr4_1:4295446-4295465 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr4_1:4296308-4296327 None:intergenic 15.0%
!! TTTAACTACTAAATTAGAAA+GGG + chr4_1:4296628-4296647 None:intergenic 15.0%
!!! TTTTAACTACTAAATTAGAA+AGG + chr4_1:4296629-4296648 None:intergenic 15.0%
!! TTCTAATTTAGTAGTTAAAA+AGG - chr4_1:4296629-4296648 Msa0530250:CDS 15.0%
!! TCTAATTTAGTAGTTAAAAA+GGG - chr4_1:4296630-4296649 Msa0530250:CDS 15.0%
!! AAATTTACATGAATAAACTA+TGG + chr4_1:4296915-4296934 None:intergenic 15.0%
!!! ATTTTTTGAATTGTTTAGTT+TGG + chr4_1:4297118-4297137 None:intergenic 15.0%
!! AACAATTCAAAAAATTTCTA+TGG - chr4_1:4297123-4297142 Msa0530250:intron 15.0%
!! ATATATTCCAAATTCTATTT+AGG + chr4_1:4297195-4297214 None:intergenic 15.0%
!!! ATACAATATACTACTTATTT+TGG - chr4_1:4297249-4297268 Msa0530250:intron 15.0%
!!! TTCCTTTTAAAAAATAAAAG+AGG - chr4_1:4298487-4298506 Msa0530250:CDS 15.0%
!!! TTCCTCTTTTATTTTTTAAA+AGG + chr4_1:4298492-4298511 None:intergenic 15.0%
!! TGAAATATAAGATAAGAATG+AGG + chr4_1:4292487-4292506 None:intergenic 20.0%
!!! TGAATTGATTTTGAAATGTT+TGG - chr4_1:4292639-4292658 Msa0530250:intron 20.0%
!!! CTTTTAGTTAGAATTAGTTT+TGG - chr4_1:4293200-4293219 Msa0530250:intron 20.0%
!! TGATCAGAAATATTTATGTT+TGG + chr4_1:4293253-4293272 None:intergenic 20.0%
!! CAAATTCAAACTATAATCAT+AGG + chr4_1:4293404-4293423 None:intergenic 20.0%
!! CTATGATTATAGTTTGAATT+TGG - chr4_1:4293402-4293421 Msa0530250:intron 20.0%
!!! TTTAGTCTTCAAACAAATTT+TGG - chr4_1:4293468-4293487 Msa0530250:intron 20.0%
!! AATCAGATAAAAAGTTCATT+TGG + chr4_1:4293784-4293803 None:intergenic 20.0%
!!! ATGAACTTTTTATCTGATTT+TGG - chr4_1:4293785-4293804 Msa0530250:intron 20.0%
!! TTTGATGAACATATGTTAAA+GGG + chr4_1:4294001-4294020 None:intergenic 20.0%
!!! TTTTGATGAACATATGTTAA+AGG + chr4_1:4294002-4294021 None:intergenic 20.0%
!! TCTCAAAATTCTTATAGAAA+AGG - chr4_1:4294420-4294439 Msa0530250:intron 20.0%
!! TAATATTATCGTAAAAAAGC+TGG - chr4_1:4295371-4295390 Msa0530250:intron 20.0%
!! GGTGAATTTATATAAAGAAA+CGG + chr4_1:4295469-4295488 None:intergenic 20.0%
!!! TTATGTTCTGAAAAATGAAA+AGG - chr4_1:4295990-4296009 Msa0530250:intron 20.0%
!! TTAACTACTAAATTAGAAAG+GGG + chr4_1:4296627-4296646 None:intergenic 20.0%
!! CTAATTTAGTAGTTAAAAAG+GGG - chr4_1:4296631-4296650 Msa0530250:CDS 20.0%
!!! AACATTTTACCGTTAAAAAA+AGG + chr4_1:4297492-4297511 None:intergenic 20.0%
!!! TAAGAAATATAACATTGACT+TGG + chr4_1:4297655-4297674 None:intergenic 20.0%
!! CACACTAAATTTACAATTTA+AGG + chr4_1:4298443-4298462 None:intergenic 20.0%
! TATCAGTAACAAATCCAAAA+GGG + chr4_1:4292367-4292386 None:intergenic 25.0%
! TTATCAGTAACAAATCCAAA+AGG + chr4_1:4292368-4292387 None:intergenic 25.0%
! ATGATGAATTAGTGTATGTT+TGG - chr4_1:4292588-4292607 Msa0530250:CDS 25.0%
!!! TTTCTAGTTAGAATCAATTC+CGG + chr4_1:4292693-4292712 None:intergenic 25.0%
!! AGGCTAAAAATTGATTCTAA+GGG + chr4_1:4292735-4292754 None:intergenic 25.0%
!! AAGGCTAAAAATTGATTCTA+AGG + chr4_1:4292736-4292755 None:intergenic 25.0%
!!! TTTGCATTCAACTCATTTTT+AGG - chr4_1:4292840-4292859 Msa0530250:intron 25.0%
! CAGTTTATGTTTGAATCATA+TGG - chr4_1:4293095-4293114 Msa0530250:intron 25.0%
!! ACCAAGTATTTTATAACACA+TGG - chr4_1:4293326-4293345 Msa0530250:intron 25.0%
! TCCATGTGTTATAAAATACT+TGG + chr4_1:4293330-4293349 None:intergenic 25.0%
!! TAGTTTGAATTTGGTCATTT+TGG - chr4_1:4293411-4293430 Msa0530250:intron 25.0%
! GGAAGACTTAAAAAGAATAA+CGG - chr4_1:4293432-4293451 Msa0530250:intron 25.0%
!!! TCATTTTCATTAGCTGTTTT+TGG - chr4_1:4293711-4293730 Msa0530250:intron 25.0%
!! GATGATGTTTTTCATTTAGT+TGG - chr4_1:4293819-4293838 Msa0530250:intron 25.0%
! TTGATGAACATATGTTAAAG+GGG + chr4_1:4294000-4294019 None:intergenic 25.0%
! TAAAGTCTATGTTTGGATTA+TGG + chr4_1:4294185-4294204 None:intergenic 25.0%
!!! ATTTCTTTTTAAGGTCTGTT+TGG + chr4_1:4294639-4294658 None:intergenic 25.0%
! AAACAGACCTTAAAAAGAAA+TGG - chr4_1:4294638-4294657 Msa0530250:intron 25.0%
! TATACTCAAATCACTTTAAC+CGG + chr4_1:4295024-4295043 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr4_1:4295194-4295213 None:intergenic 25.0%
!! ACAAAAATCTCAAAAGTACA+TGG - chr4_1:4295325-4295344 Msa0530250:intron 25.0%
!! TTTTCTCAAATTCACGATTT+TGG - chr4_1:4295418-4295437 Msa0530250:intron 25.0%
! ATATAGAAAACACACAGAAT+TGG + chr4_1:4295490-4295509 None:intergenic 25.0%
! ATTGAAATTCACCATATAGA+GGG + chr4_1:4295683-4295702 None:intergenic 25.0%
!! ATTTACTCTAAAAGCAAGTT+TGG + chr4_1:4295879-4295898 None:intergenic 25.0%
! TTCAATGTAATCACATTTGT+TGG - chr4_1:4296333-4296352 Msa0530250:intron 25.0%
! TGATTGACAATAATAAGGTA+TGG - chr4_1:4296456-4296475 Msa0530250:intron 25.0%
!!! AGCAAAATTTAGTTTTACTC+AGG + chr4_1:4296949-4296968 None:intergenic 25.0%
!!! AAATTTTGCTGACTTAGAAT+TGG - chr4_1:4296959-4296978 Msa0530250:intron 25.0%
!! TCCTTAATTTGGAAATAGAA+AGG - chr4_1:4297294-4297313 Msa0530250:intron 25.0%
!! CCTTAATTTGGAAATAGAAA+GGG - chr4_1:4297295-4297314 Msa0530250:intron 25.0%
!!! AGGATTAGACCTTTTTTTAA+CGG - chr4_1:4297480-4297499 Msa0530250:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr4_1:4297802-4297821 None:intergenic 25.0%
! TAACTATCATAAGTACTTGT+GGG - chr4_1:4297828-4297847 Msa0530250:intron 25.0%
! AATAAGCTTAAAACAGCATA+TGG + chr4_1:4297893-4297912 None:intergenic 25.0%
!! AATTTAAGCTTGATGTTTTG+AGG + chr4_1:4298173-4298192 None:intergenic 25.0%
! ATCAAGCTTAAATTGATAGA+AGG - chr4_1:4298179-4298198 Msa0530250:intron 25.0%
!!! TAACCTTTGTATTTTTGAAC+AGG - chr4_1:4298306-4298325 Msa0530250:CDS 25.0%
!!! TTTTGATTTGAATAAGGACA+TGG + chr4_1:4298402-4298421 None:intergenic 25.0%
! ATGTCCTTATTCAAATCAAA+AGG - chr4_1:4298401-4298420 Msa0530250:CDS 25.0%
! TACAATTTAAGGAAAAACTC+AGG + chr4_1:4298432-4298451 None:intergenic 25.0%
! TTAAAAGGAACAAACAACAT+AGG + chr4_1:4298477-4298496 None:intergenic 25.0%
!!! GAAATAGATAATGGAATGTT+TGG + chr4_1:4298572-4298591 None:intergenic 25.0%
! ATAAAGGTTTCTAATAGACT+TGG + chr4_1:4298602-4298621 None:intergenic 25.0%
! AGAAACCTTTATGCTAATTA+AGG - chr4_1:4298610-4298629 Msa0530250:five_prime_UTR 25.0%
TAGTAGTTGAAGAAATAGCA+AGG + chr4_1:4292211-4292230 None:intergenic 30.0%
! ATCATCTTGATCATTGCTTT+TGG + chr4_1:4292330-4292349 None:intergenic 30.0%
! AAATCATCATTCAACCCTTT+TGG - chr4_1:4292350-4292369 Msa0530250:exon 30.0%
! AGGATTTTCAGACAATTGAA+TGG + chr4_1:4292408-4292427 None:intergenic 30.0%
!!! CAATGCTTTTAACTTTCCTT+TGG - chr4_1:4292505-4292524 Msa0530250:CDS 30.0%
AGACTCAAAAGAAAAACCAA+AGG + chr4_1:4292524-4292543 None:intergenic 30.0%
!! AGTAGAATTGATTTTGTCTC+CGG - chr4_1:4292671-4292690 Msa0530250:intron 30.0%
ATGGCTGTGTACTTAAAATT+TGG - chr4_1:4292931-4292950 Msa0530250:intron 30.0%
TGGCTGTGTACTTAAAATTT+GGG - chr4_1:4292932-4292951 Msa0530250:intron 30.0%
!! TTTGGTTGAAAGTTTGTTGA+AGG - chr4_1:4293026-4293045 Msa0530250:intron 30.0%
AAGGTGAAGTAATTTATGTC+TGG - chr4_1:4293045-4293064 Msa0530250:intron 30.0%
!! GCTAATATTTCTAGCTTCTA+CGG + chr4_1:4293181-4293200 None:intergenic 30.0%
! TTTTCACAGCATACATTTTG+AGG + chr4_1:4293556-4293575 None:intergenic 30.0%
TGTATGCTGTGAAAACAAAA+TGG - chr4_1:4293561-4293580 Msa0530250:intron 30.0%
GTATGCTGTGAAAACAAAAT+GGG - chr4_1:4293562-4293581 Msa0530250:intron 30.0%
GCTAATGAAAATGAACTATC+AGG + chr4_1:4293705-4293724 None:intergenic 30.0%
TTCCTAGAAAATACAAGACA+AGG - chr4_1:4293871-4293890 Msa0530250:intron 30.0%
TCCTAGAAAATACAAGACAA+GGG - chr4_1:4293872-4293891 Msa0530250:intron 30.0%
TACGGATCATATGTAAAATC+CGG - chr4_1:4293902-4293921 Msa0530250:intron 30.0%
!!! TTTTTTCCTTTCCTTTTTGC+AGG - chr4_1:4294028-4294047 Msa0530250:intron 30.0%
! TTTTTCCTTTCCTTTTTGCA+GGG - chr4_1:4294029-4294048 Msa0530250:intron 30.0%
TACGAGTTAAAGTCTATGTT+TGG + chr4_1:4294192-4294211 None:intergenic 30.0%
! AGTGTAGCCATTTCTTTTTA+AGG + chr4_1:4294648-4294667 None:intergenic 30.0%
TATGATCACATTTCTCCTTA+AGG - chr4_1:4294715-4294734 Msa0530250:CDS 30.0%
ATGATCACATTTCTCCTTAA+GGG - chr4_1:4294716-4294735 Msa0530250:CDS 30.0%
TATCTTGCTTGAATTCTTCA+AGG + chr4_1:4294774-4294793 None:intergenic 30.0%
CGTCTAGGAAACTATAATAT+AGG + chr4_1:4294920-4294939 None:intergenic 30.0%
! TTGATTTGAGTGTGTTGTAT+GGG - chr4_1:4294946-4294965 Msa0530250:intron 30.0%
!! TTGATTTGCAAAATTGATCC+CGG - chr4_1:4295002-4295021 Msa0530250:CDS 30.0%
ATACTCAAATCACTTTAACC+GGG + chr4_1:4295023-4295042 None:intergenic 30.0%
TGGATACATTCATGTAAAAG+CGG - chr4_1:4295058-4295077 Msa0530250:intron 30.0%
TAACTAGAAGCTAGAATTTG+GGG + chr4_1:4295130-4295149 None:intergenic 30.0%
CTAACTAGAAGCTAGAATTT+GGG + chr4_1:4295131-4295150 None:intergenic 30.0%
TCTAACTAGAAGCTAGAATT+TGG + chr4_1:4295132-4295151 None:intergenic 30.0%
! AATTTTGTCTTTTGCAAGAG+TGG - chr4_1:4295224-4295243 Msa0530250:intron 30.0%
! GTCTTTTACAATATCCTTGA+TGG + chr4_1:4295307-4295326 None:intergenic 30.0%
TCGTGAATTTGAGAAAATAG+AGG + chr4_1:4295415-4295434 None:intergenic 30.0%
ATGCAGCACATCATTTAATT+AGG + chr4_1:4295525-4295544 None:intergenic 30.0%
!! ATGCCTTTTTGTTTCTTTCT+AGG - chr4_1:4295655-4295674 Msa0530250:intron 30.0%
GAACCTAGAAAGAAACAAAA+AGG + chr4_1:4295661-4295680 None:intergenic 30.0%
CATTGAAATTCACCATATAG+AGG + chr4_1:4295684-4295703 None:intergenic 30.0%
!!! AATGCAGTTTTGGATACATA+CGG + chr4_1:4295750-4295769 None:intergenic 30.0%
! ACAAAGATCAAATGCAGTTT+TGG + chr4_1:4295760-4295779 None:intergenic 30.0%
ATGAAAAGGCTGATGTTTAT+CGG - chr4_1:4296004-4296023 Msa0530250:intron 30.0%
! TGTTTATCGGTTACCTTATT+TGG - chr4_1:4296017-4296036 Msa0530250:intron 30.0%
! TGGAGGATAACATAGTATTT+TGG - chr4_1:4296197-4296216 Msa0530250:intron 30.0%
! GGAGGATAACATAGTATTTT+GGG - chr4_1:4296198-4296217 Msa0530250:intron 30.0%
CCTTATTATTGTCAATCATG+AGG + chr4_1:4296454-4296473 None:intergenic 30.0%
CCTCATGATTGACAATAATA+AGG - chr4_1:4296451-4296470 Msa0530250:CDS 30.0%
ACAATAATAAGGTATGGAGA+GGG - chr4_1:4296462-4296481 Msa0530250:intron 30.0%
TTGCTCATACTTAAGTCATT+CGG + chr4_1:4296550-4296569 None:intergenic 30.0%
ATTTAGTAGTTAAAAAGGGG+TGG - chr4_1:4296634-4296653 Msa0530250:CDS 30.0%
TTTAGTAGTTAAAAAGGGGT+GGG - chr4_1:4296635-4296654 Msa0530250:CDS 30.0%
TCCTGTTGTAAAATTAAGCT+CGG - chr4_1:4296725-4296744 Msa0530250:intron 30.0%
!!! GTTTTTTCCTCTGTATTGTT+TGG + chr4_1:4296840-4296859 None:intergenic 30.0%
AATACAGAGGAAAAAACACT+TGG - chr4_1:4296843-4296862 Msa0530250:intron 30.0%
AATAATCAAGCTTCTGATGT+TGG - chr4_1:4296983-4297002 Msa0530250:intron 30.0%
ATAATCAAGCTTCTGATGTT+GGG - chr4_1:4296984-4297003 Msa0530250:intron 30.0%
!! TGAATTGTTTAGTTTGGTGA+AGG + chr4_1:4297112-4297131 None:intergenic 30.0%
CACTACACCTAAATAGAATT+TGG - chr4_1:4297185-4297204 Msa0530250:intron 30.0%
CCCTTTCTATTTCCAAATTA+AGG + chr4_1:4297298-4297317 None:intergenic 30.0%
! AAATATGTTTCAGTTGATGC+AGG - chr4_1:4297674-4297693 Msa0530250:intron 30.0%
CTAACTATCATAAGTACTTG+TGG - chr4_1:4297827-4297846 Msa0530250:intron 30.0%
TCATAATCTATCAGAGTTTG+TGG + chr4_1:4297917-4297936 None:intergenic 30.0%
AGTAAAGGCTTATCGTATAA+GGG + chr4_1:4297991-4298010 None:intergenic 30.0%
TAGTAAAGGCTTATCGTATA+AGG + chr4_1:4297992-4298011 None:intergenic 30.0%
AGTTGAGCAGTTTATAGTAA+AGG + chr4_1:4298006-4298025 None:intergenic 30.0%
! CTAAGTGTTTTATCCAAAGA+AGG - chr4_1:4298024-4298043 Msa0530250:intron 30.0%
!! TTTGTTCTTGTTGTTGTAGA+TGG - chr4_1:4298066-4298085 Msa0530250:intron 30.0%
!! TTGTTCTTGTTGTTGTAGAT+GGG - chr4_1:4298067-4298086 Msa0530250:intron 30.0%
! AAAGCATCAATAACTTTCTC+AGG + chr4_1:4298332-4298351 None:intergenic 30.0%
!!! CTGTCCTTTTGATTTGAATA+AGG + chr4_1:4298408-4298427 None:intergenic 30.0%
GGATGTTTGGAAATAGATAA+TGG + chr4_1:4298581-4298600 None:intergenic 30.0%
TTCTAATAGACTTGGATGTT+TGG + chr4_1:4298594-4298613 None:intergenic 30.0%
CTCAACCTTAATTAGCATAA+AGG + chr4_1:4298618-4298637 None:intergenic 30.0%
TTATGCTAATTAAGGTTGAG+AGG - chr4_1:4298618-4298637 Msa0530250:five_prime_UTR 30.0%
ACATAACCGAACATAACTAG+CGG + chr4_1:4292106-4292125 None:intergenic 35.0%
TGCAAAACAAAGAGCTTCAA+TGG + chr4_1:4292150-4292169 None:intergenic 35.0%
!!! AGCTCTTTGTTTTGCAACAA+TGG - chr4_1:4292154-4292173 Msa0530250:three_prime_UTR 35.0%
GAAATAGCAAGGTTTAGTGT+TGG + chr4_1:4292200-4292219 None:intergenic 35.0%
!! TGTATGTTTGGTTCTACTTC+CGG - chr4_1:4292600-4292619 Msa0530250:CDS 35.0%
! TCAAATCATTTTGCCTACTC+CGG + chr4_1:4292622-4292641 None:intergenic 35.0%
GGAGACAAAATCAATTCTAC+TGG + chr4_1:4292672-4292691 None:intergenic 35.0%
ACAAGTAGTTGTGTTTGGTT+TGG + chr4_1:4292902-4292921 None:intergenic 35.0%
CTTACACAAGTAGTTGTGTT+TGG + chr4_1:4292907-4292926 None:intergenic 35.0%
AACTACTTGTGTAAGCAACA+TGG - chr4_1:4292912-4292931 Msa0530250:intron 35.0%
!! AAAAGCGCGTTTTGTTCAAA+AGG - chr4_1:4292960-4292979 Msa0530250:intron 35.0%
!!! GTTAGAATTAGTTTTGGGAC+TGG - chr4_1:4293206-4293225 Msa0530250:intron 35.0%
TCAGAATCTCATGTTTGGAT+TGG + chr4_1:4293285-4293304 None:intergenic 35.0%
ATCTCTCAGAATCTCATGTT+TGG + chr4_1:4293290-4293309 None:intergenic 35.0%
!!! AAATTTTGGCTTAGCCATCT+AGG - chr4_1:4293482-4293501 Msa0530250:intron 35.0%
AGGTCACTGATCAAACAAAA+AGG + chr4_1:4293536-4293555 None:intergenic 35.0%
ACGGATCATATGTAAAATCC+GGG - chr4_1:4293903-4293922 Msa0530250:intron 35.0%
GGAACAATTGTATTCCTTCA+CGG - chr4_1:4294070-4294089 Msa0530250:intron 35.0%
TTACCTCAGACATAACAACT+CGG + chr4_1:4294120-4294139 None:intergenic 35.0%
TTTCTCCCTCTTAAAACAGT+TGG - chr4_1:4294241-4294260 Msa0530250:intron 35.0%
!!! ATCTGCCAACTGTTTTAAGA+GGG + chr4_1:4294249-4294268 None:intergenic 35.0%
!! TATCTGCCAACTGTTTTAAG+AGG + chr4_1:4294250-4294269 None:intergenic 35.0%
TTAAAACAGTTGGCAGATAC+AGG - chr4_1:4294251-4294270 Msa0530250:intron 35.0%
TAAAACAGTTGGCAGATACA+GGG - chr4_1:4294252-4294271 Msa0530250:intron 35.0%
GTGTAATTAAAACCGTATCC+TGG + chr4_1:4294332-4294351 None:intergenic 35.0%
!!! GGATACGGTTTTAATTACAC+AGG - chr4_1:4294332-4294351 Msa0530250:intron 35.0%
! TACACAGGTGTTATCATGAA+TGG - chr4_1:4294347-4294366 Msa0530250:intron 35.0%
ACCTGAACAACTAGGTAAAA+CGG + chr4_1:4294496-4294515 None:intergenic 35.0%
CTTTAGATACCTGAACAACT+AGG + chr4_1:4294504-4294523 None:intergenic 35.0%
AACCTACAAGAAATCCCTTA+AGG + chr4_1:4294733-4294752 None:intergenic 35.0%
GGATTTCTTGTAGGTTCATA+TGG - chr4_1:4294737-4294756 Msa0530250:intron 35.0%
AAGTTTAGACGTGCATTCAT+TGG + chr4_1:4294887-4294906 None:intergenic 35.0%
TCAAATCAAGAGATACGTCT+AGG + chr4_1:4294935-4294954 None:intergenic 35.0%
! CTTGATTTGAGTGTGTTGTA+TGG - chr4_1:4294945-4294964 Msa0530250:intron 35.0%
GGATACATTCATGTAAAAGC+GGG - chr4_1:4295059-4295078 Msa0530250:intron 35.0%
! CTTCTAGTTAGAATCAATCG+TGG - chr4_1:4295140-4295159 Msa0530250:intron 35.0%
ACTTAATCACTTAAAGCCGA+TGG - chr4_1:4295259-4295278 Msa0530250:intron 35.0%
TAGTGCTTATGCTTATCCAT+CGG + chr4_1:4295278-4295297 None:intergenic 35.0%
AAGCACTATGTTTACCATCA+AGG - chr4_1:4295290-4295309 Msa0530250:intron 35.0%
!! AAGAAACAAAAAGGCATCAC+AGG + chr4_1:4295652-4295671 None:intergenic 35.0%
AGAATGCTATTATTGCTGAG+CGG - chr4_1:4295706-4295725 Msa0530250:intron 35.0%
!!! ATGCAGTTTTGGATACATAC+GGG + chr4_1:4295749-4295768 None:intergenic 35.0%
TTATGTCACTAACCAAATCC+AGG + chr4_1:4296054-4296073 None:intergenic 35.0%
TGCTGTCAAAATATGCTAGA+AGG - chr4_1:4296104-4296123 Msa0530250:intron 35.0%
TACTATGTTATCCTCCAACT+AGG + chr4_1:4296194-4296213 None:intergenic 35.0%
ACACATTCGATCATAAGTGT+CGG - chr4_1:4296371-4296390 Msa0530250:intron 35.0%
GACAATAATAAGGTATGGAG+AGG - chr4_1:4296461-4296480 Msa0530250:intron 35.0%
CAATAATAAGGTATGGAGAG+GGG - chr4_1:4296463-4296482 Msa0530250:intron 35.0%
AGAAGCTTATCTTACCAAAC+CGG - chr4_1:4296595-4296614 Msa0530250:CDS 35.0%
TTAGTAGTTAAAAAGGGGTG+GGG - chr4_1:4296636-4296655 Msa0530250:CDS 35.0%
! GAGCTTAATTTTACAACAGG+AGG + chr4_1:4296726-4296745 None:intergenic 35.0%
GCCATGGGATTCTAATATTT+GGG - chr4_1:4296747-4296766 Msa0530250:intron 35.0%
TCCCAAATATTAGAATCCCA+TGG + chr4_1:4296751-4296770 None:intergenic 35.0%
ACTTTCAGTGAAATAGCAGA+AGG - chr4_1:4297051-4297070 Msa0530250:intron 35.0%
GAATTGATAAGCTGTGATAG+TGG - chr4_1:4297145-4297164 Msa0530250:intron 35.0%
CAACTCAAGCATCCTTAATT+TGG - chr4_1:4297283-4297302 Msa0530250:intron 35.0%
ATTTGGAAATAGAAAGGGCA+TGG - chr4_1:4297300-4297319 Msa0530250:intron 35.0%
!! AAACTGTTGACTTGGTTGTT+GGG + chr4_1:4297560-4297579 None:intergenic 35.0%
!! AAAACTGTTGACTTGGTTGT+TGG + chr4_1:4297561-4297580 None:intergenic 35.0%
! CTAGCAAAAAACTGTTGACT+TGG + chr4_1:4297568-4297587 None:intergenic 35.0%
!! ATATAACATTGACTTGGTGC+TGG + chr4_1:4297649-4297668 None:intergenic 35.0%
TTATTCTACTGTGCCTTCTT+TGG + chr4_1:4298040-4298059 None:intergenic 35.0%
! AAAGAAGGCACAGTAGAATA+AGG - chr4_1:4298039-4298058 Msa0530250:intron 35.0%
ATAGCAGAGGAGTTTCAAAA+AGG - chr4_1:4298143-4298162 Msa0530250:intron 35.0%
CTTAAATTGATAGAAGGAGC+TGG - chr4_1:4298185-4298204 Msa0530250:intron 35.0%
AGGCCTGTTCAAAAATACAA+AGG + chr4_1:4298312-4298331 None:intergenic 35.0%
ACAACCAAAACTTACCTTGA+AGG - chr4_1:4298373-4298392 Msa0530250:CDS 35.0%
! GATTCCTTCAAGGTAAGTTT+TGG + chr4_1:4298380-4298399 None:intergenic 35.0%
AACATAACTAGCGGTTCATG+TGG + chr4_1:4292097-4292116 None:intergenic 40.0%
CATGAACCGCTAGTTATGTT+CGG - chr4_1:4292097-4292116 Msa0530250:three_prime_UTR 40.0%
CAGACAATTGAATGGCACTA+CGG + chr4_1:4292400-4292419 None:intergenic 40.0%
!! TTCTAGCTTCTACGGTAAGA+TGG + chr4_1:4293173-4293192 None:intergenic 40.0%
AAGGCCTATGGAAGAATAAG+AGG - chr4_1:4293509-4293528 Msa0530250:intron 40.0%
AGGTCCTCTTATTCTTCCAT+AGG + chr4_1:4293516-4293535 None:intergenic 40.0%
ACTGAACAGAAAACAGATCG+TGG + chr4_1:4293669-4293688 None:intergenic 40.0%
! GCCCTTGTCTTGTATTTTCT+AGG + chr4_1:4293876-4293895 None:intergenic 40.0%
GAAAATACAAGACAAGGGCA+AGG - chr4_1:4293877-4293896 Msa0530250:intron 40.0%
TAAAATCCGGGAAGTTGAGA+TGG - chr4_1:4293915-4293934 Msa0530250:intron 40.0%
! GAAGTTGAGATGGTTTGTGA+GGG - chr4_1:4293925-4293944 Msa0530250:intron 40.0%
AAACCAAATCCTATCCAGTC+AGG + chr4_1:4294293-4294312 None:intergenic 40.0%
AAAGGAGTTCCATGATGCAT+TGG - chr4_1:4294438-4294457 Msa0530250:intron 40.0%
GCAGTTTATCCAATGCATCA+TGG + chr4_1:4294450-4294469 None:intergenic 40.0%
TGCATTGGATAAACTGCTTG+AGG - chr4_1:4294453-4294472 Msa0530250:intron 40.0%
! GATAAACTGCTTGAGGTGTT+GGG - chr4_1:4294460-4294479 Msa0530250:intron 40.0%
!! ATAAACTGCTTGAGGTGTTG+GGG - chr4_1:4294461-4294480 Msa0530250:intron 40.0%
! TCCGTTTTACCTAGTTGTTC+AGG - chr4_1:4294492-4294511 Msa0530250:intron 40.0%
CTCCTTAAGGGATTTCTTGT+AGG - chr4_1:4294728-4294747 Msa0530250:intron 40.0%
!! ATGGGAGATGAGCTTGTTAA+TGG + chr4_1:4294821-4294840 None:intergenic 40.0%
TGCTGAAATAGTCCAGGAAT+GGG + chr4_1:4294839-4294858 None:intergenic 40.0%
GAATGCACGTCTAAACTTGA+TGG - chr4_1:4294889-4294908 Msa0530250:intron 40.0%
! GTGTGTTGTATGGGATTTTG+TGG - chr4_1:4294955-4294974 Msa0530250:intron 40.0%
CTAGTTAGAATCAATCGTGG+AGG - chr4_1:4295143-4295162 Msa0530250:intron 40.0%
! AGCTGGCTTAAATCGAGTTA+TGG - chr4_1:4295388-4295407 Msa0530250:intron 40.0%
CTTTCTAGGTTCCCTCTATA+TGG - chr4_1:4295669-4295688 Msa0530250:intron 40.0%
GCTCAGCAATAATAGCATTC+TGG + chr4_1:4295707-4295726 None:intergenic 40.0%
! TTACCTTATTTGGCAAGCAG+TGG - chr4_1:4296027-4296046 Msa0530250:intron 40.0%
TTGTCTGAAAACACAAGTCC+AGG - chr4_1:4296139-4296158 Msa0530250:intron 40.0%
ATCATGAGGAATATACGCTG+AGG + chr4_1:4296440-4296459 None:intergenic 40.0%
ATGTATCTCTTCGTACGAGA+AGG - chr4_1:4296490-4296509 Msa0530250:intron 40.0%
GGTAAGATAAGCTTCTAACG+AGG + chr4_1:4296591-4296610 None:intergenic 40.0%
TACTAAATTAGAAAGGGGCG+AGG + chr4_1:4296622-4296641 None:intergenic 40.0%
TAGTAGTTAAAAAGGGGTGG+GGG - chr4_1:4296637-4296656 Msa0530250:CDS 40.0%
GACTAGGTAAGCCATAATGA+GGG + chr4_1:4296672-4296691 None:intergenic 40.0%
CTTACCTAGTCGTCTATATC+AGG - chr4_1:4296681-4296700 Msa0530250:intron 40.0%
! GCCGAGCTTAATTTTACAAC+AGG + chr4_1:4296729-4296748 None:intergenic 40.0%
TGTAAAATTAAGCTCGGCCA+TGG - chr4_1:4296731-4296750 Msa0530250:intron 40.0%
GTAAAATTAAGCTCGGCCAT+GGG - chr4_1:4296732-4296751 Msa0530250:intron 40.0%
GGCCATGGGATTCTAATATT+TGG - chr4_1:4296746-4296765 Msa0530250:intron 40.0%
! TTGTTTGGTAGCAAGTCTCT+CGG + chr4_1:4296825-4296844 None:intergenic 40.0%
CTTGCTACCAAACAATACAG+AGG - chr4_1:4296830-4296849 Msa0530250:CDS 40.0%
GCAAGAAAAGCCAACTTCAA+CGG - chr4_1:4297027-4297046 Msa0530250:intron 40.0%
!! ACTGAAAGTACCGTTGAAGT+TGG + chr4_1:4297040-4297059 None:intergenic 40.0%
CAGAAGGATTTGCAACTAAC+AGG - chr4_1:4297067-4297086 Msa0530250:intron 40.0%
! TAGAAAGGGCATGGTGAAAT+TGG - chr4_1:4297309-4297328 Msa0530250:intron 40.0%
! AGAAAGGGCATGGTGAAATT+GGG - chr4_1:4297310-4297329 Msa0530250:intron 40.0%
! CCTACAACTTGTTCTGAGTT+AGG + chr4_1:4297336-4297355 None:intergenic 40.0%
CCTAACTCAGAACAAGTTGT+AGG - chr4_1:4297333-4297352 Msa0530250:intron 40.0%
CGGTAAAATGTTAGTGCTGT+CGG - chr4_1:4297500-4297519 Msa0530250:intron 40.0%
TCGGTATTATGCTGAGTGTA+GGG - chr4_1:4297519-4297538 Msa0530250:intron 40.0%
!! AACTGTTGACTTGGTTGTTG+GGG + chr4_1:4297559-4297578 None:intergenic 40.0%
! TTTTTGCTAGATTCGTACCG+AGG - chr4_1:4297578-4297597 Msa0530250:intron 40.0%
TTCTTCACCTATGATGTCCT+CGG + chr4_1:4297598-4297617 None:intergenic 40.0%
TACTTCTGACCAAGAAGCTT+GGG - chr4_1:4297620-4297639 Msa0530250:intron 40.0%
AAAGTCTCTTGAACCTGAAG+TGG - chr4_1:4297712-4297731 Msa0530250:intron 40.0%
TTGAACCTGAAGTGGTAAAC+TGG - chr4_1:4297720-4297739 Msa0530250:intron 40.0%
CAAAACCAGTTTACCACTTC+AGG + chr4_1:4297728-4297747 None:intergenic 40.0%
ATAAGCCGATAATGCTTGCT+TGG - chr4_1:4298090-4298109 Msa0530250:intron 40.0%
TAAGCCGATAATGCTTGCTT+GGG - chr4_1:4298091-4298110 Msa0530250:intron 40.0%
GTCATATGCCACAAGAAGAT+TGG - chr4_1:4298207-4298226 Msa0530250:intron 40.0%
TACTCTCACCAATCTTCTTG+TGG + chr4_1:4298218-4298237 None:intergenic 40.0%
TAAGGACATGGATTCCTTCA+AGG + chr4_1:4298390-4298409 None:intergenic 40.0%
TCAAGCACAAGTTCAAGCAG+AGG - chr4_1:4292257-4292276 Msa0530250:three_prime_UTR 45.0%
TCTGAAAATCCTGCTGAAGC+TGG - chr4_1:4292416-4292435 Msa0530250:intron 45.0%
!! TTTGGTTCTACTTCCGGAGT+AGG - chr4_1:4292606-4292625 Msa0530250:CDS 45.0%
GCTTAGCCATCTAGGAACTA+AGG - chr4_1:4293490-4293509 Msa0530250:intron 45.0%
CATAGGCCTTAGTTCCTAGA+TGG + chr4_1:4293499-4293518 None:intergenic 45.0%
CATCTAGGAACTAAGGCCTA+TGG - chr4_1:4293497-4293516 Msa0530250:intron 45.0%
CAAGACAAGGGCAAGGAATA+CGG - chr4_1:4293884-4293903 Msa0530250:intron 45.0%
CACAAACCATCTCAACTTCC+CGG + chr4_1:4293924-4293943 None:intergenic 45.0%
! GGAAGTTGAGATGGTTTGTG+AGG - chr4_1:4293924-4293943 Msa0530250:intron 45.0%
! AGATGGTTTGTGAGGGAAAC+TGG - chr4_1:4293932-4293951 Msa0530250:intron 45.0%
TCTTTGCTGACCCTGCAAAA+AGG + chr4_1:4294042-4294061 None:intergenic 45.0%
CGGTAGCTAAAAGATTGCGT+TGG + chr4_1:4294100-4294119 None:intergenic 45.0%
CTACCGAGTTGTTATGTCTG+AGG - chr4_1:4294114-4294133 Msa0530250:intron 45.0%
TTAAAACCGTATCCTGGCTG+TGG + chr4_1:4294326-4294345 None:intergenic 45.0%
GGATAAACTGCTTGAGGTGT+TGG - chr4_1:4294459-4294478 Msa0530250:intron 45.0%
!! TAAACTGCTTGAGGTGTTGG+GGG - chr4_1:4294462-4294481 Msa0530250:intron 45.0%
! TAGGTTCATATGGACTGACC+TGG - chr4_1:4294747-4294766 Msa0530250:intron 45.0%
! AGGTTCATATGGACTGACCT+GGG - chr4_1:4294748-4294767 Msa0530250:intron 45.0%
CTGCTGAAATAGTCCAGGAA+TGG + chr4_1:4294840-4294859 None:intergenic 45.0%
CTTAGCTGCTGAAATAGTCC+AGG + chr4_1:4294845-4294864 None:intergenic 45.0%
CTGGACTATTTCAGCAGCTA+AGG - chr4_1:4294843-4294862 Msa0530250:intron 45.0%
TTTCAGCAGCTAAGGTTAGC+TGG - chr4_1:4294851-4294870 Msa0530250:intron 45.0%
GCTGAGCGGTTTATTGAAAG+AGG - chr4_1:4295720-4295739 Msa0530250:intron 45.0%
CGATGTCCATGCTTCATAAG+CGG + chr4_1:4296271-4296290 None:intergenic 45.0%
!! CATTTGTTGGTGTCACGCAT+TGG - chr4_1:4296346-4296365 Msa0530250:intron 45.0%
! ACTTTATGCGCCCCTTTTCT+AGG - chr4_1:4296398-4296417 Msa0530250:CDS 45.0%
! CTTTATGCGCCCCTTTTCTA+GGG - chr4_1:4296399-4296418 Msa0530250:CDS 45.0%
CGACTAGGTAAGCCATAATG+AGG + chr4_1:4296673-4296692 None:intergenic 45.0%
AGCACCTGATATAGACGACT+AGG + chr4_1:4296688-4296707 None:intergenic 45.0%
!! AGCTGTGATAGTGGTAGAGA+AGG - chr4_1:4297154-4297173 Msa0530250:intron 45.0%
! GATAGTGGTAGAGAAGGCTA+AGG - chr4_1:4297160-4297179 Msa0530250:intron 45.0%
GTCGGTATTATGCTGAGTGT+AGG - chr4_1:4297518-4297537 Msa0530250:intron 45.0%
ATTCGTACCGAGGACATCAT+AGG - chr4_1:4297588-4297607 Msa0530250:intron 45.0%
CAAGCTTCTTGGTCAGAAGT+AGG + chr4_1:4297621-4297640 None:intergenic 45.0%
CTACTTCTGACCAAGAAGCT+TGG - chr4_1:4297619-4297638 Msa0530250:intron 45.0%
ATCCAAACCTAGAGCCTGTT+TGG - chr4_1:4297785-4297804 Msa0530250:intron 45.0%
!! ATCCAAACAGGCTCTAGGTT+TGG + chr4_1:4297790-4297809 None:intergenic 45.0%
AGTCAATCCAAACAGGCTCT+AGG + chr4_1:4297795-4297814 None:intergenic 45.0%
!! GGACTGTTTTCAAGAGCTTG+TGG - chr4_1:4297849-4297868 Msa0530250:intron 45.0%
AAGCCGATAATGCTTGCTTG+GGG - chr4_1:4298092-4298111 Msa0530250:intron 45.0%
AACTCCTCTGCTATAGACTG+TGG + chr4_1:4298137-4298156 None:intergenic 45.0%
TGAATGGCACTACGGCTTGA+TGG + chr4_1:4292392-4292411 None:intergenic 50.0%
GCTGACCCTGCAAAAAGGAA+AGG + chr4_1:4294037-4294056 None:intergenic 50.0%
CGCTTGTCAATAAGTGCTCG+TGG + chr4_1:4294583-4294602 None:intergenic 50.0%
GCTTGAATTCTTCAAGGCCC+AGG + chr4_1:4294768-4294787 None:intergenic 50.0%
ACAAGCTCATCTCCCATTCC+TGG - chr4_1:4294824-4294843 Msa0530250:intron 50.0%
GGTCCACTGCTTGCCAAATA+AGG + chr4_1:4296033-4296052 None:intergenic 50.0%
TATTTGGCAAGCAGTGGACC+TGG - chr4_1:4296033-4296052 Msa0530250:intron 50.0%
ACGCATCCGCTTATGAAGCA+TGG - chr4_1:4296262-4296281 Msa0530250:CDS 50.0%
TCACGCCCAACCCTAGAAAA+GGG + chr4_1:4296412-4296431 None:intergenic 50.0%
TTCACGCCCAACCCTAGAAA+AGG + chr4_1:4296413-4296432 None:intergenic 50.0%
ACGAGGTGACTCGTTCACTT+GGG + chr4_1:4296574-4296593 None:intergenic 50.0%
AACGAGGTGACTCGTTCACT+TGG + chr4_1:4296575-4296594 None:intergenic 50.0%
AATTAGAAAGGGGCGAGGAC+CGG + chr4_1:4296617-4296636 None:intergenic 50.0%
TAGTTAAAAAGGGGTGGGGG+CGG - chr4_1:4296640-4296659 Msa0530250:CDS 50.0%
TTGAGGCTCAGGGACTGTTT+CGG + chr4_1:4296774-4296793 None:intergenic 50.0%
! CCTTTTAGGCTTGAGGCTCA+GGG + chr4_1:4296784-4296803 None:intergenic 50.0%
!!! TGAGAGTGCCTTCGCCTTTT+AGG + chr4_1:4296798-4296817 None:intergenic 50.0%
!! AAAGGCGAAGGCACTCTCAT+TGG - chr4_1:4296799-4296818 Msa0530250:CDS 50.0%
!! TGTTGACTTGGTTGTTGGGG+TGG + chr4_1:4297556-4297575 None:intergenic 50.0%
!! TGCTGGTTTCCCAAGCTTCT+TGG + chr4_1:4297632-4297651 None:intergenic 50.0%
!! CAGGCTCTAGGTTTGGATAC+TGG + chr4_1:4297783-4297802 None:intergenic 50.0%
AGCCGATAATGCTTGCTTGG+GGG - chr4_1:4298093-4298112 Msa0530250:intron 50.0%
AGCCCCCAAGCAAGCATTAT+CGG + chr4_1:4298098-4298117 None:intergenic 50.0%
CTTGCCACAGTCTATAGCAG+AGG - chr4_1:4298130-4298149 Msa0530250:intron 50.0%
CCAACATTGCCAGCTTCAGC+AGG + chr4_1:4292428-4292447 None:intergenic 55.0%
CCTGCTGAAGCTGGCAATGT+TGG - chr4_1:4292425-4292444 Msa0530250:intron 55.0%
GGGCAATGCGACTGTCGTAA+TGG - chr4_1:4293582-4293601 Msa0530250:intron 55.0%
GGGTCAGCAAAGAGTAGACG+AGG - chr4_1:4294049-4294068 Msa0530250:intron 55.0%
TGCTTTGCGCCTGACTGGAT+AGG - chr4_1:4294281-4294300 Msa0530250:intron 55.0%
GCGCCTGACTGGATAGGATT+TGG - chr4_1:4294287-4294306 Msa0530250:intron 55.0%
TTCAGTGACAAGCCACAGCC+AGG - chr4_1:4294311-4294330 Msa0530250:intron 55.0%
GACAAGCCACAGCCAGGATA+CGG - chr4_1:4294317-4294336 Msa0530250:intron 55.0%
GCAAGCAGTGGACCTGGATT+TGG - chr4_1:4296039-4296058 Msa0530250:intron 55.0%
AGGTCACCACTGACCCTGAA+CGG + chr4_1:4296174-4296193 None:intergenic 55.0%
AGGGTCAGTGGTGACCTAGT+TGG - chr4_1:4296177-4296196 Msa0530250:intron 55.0%
GTCAGTGGTGACCTAGTTGG+AGG - chr4_1:4296180-4296199 Msa0530250:intron 55.0%
!!! ATGCGCCCCTTTTCTAGGGT+TGG - chr4_1:4296403-4296422 Msa0530250:CDS 55.0%
!!! TGCGCCCCTTTTCTAGGGTT+GGG - chr4_1:4296404-4296423 Msa0530250:CDS 55.0%
CACGCCCAACCCTAGAAAAG+GGG + chr4_1:4296411-4296430 None:intergenic 55.0%
GGCGGTTGCTTCCCTCATTA+TGG - chr4_1:4296658-4296677 Msa0530250:CDS 55.0%
CCCTGAGCCTCAAGCCTAAA+AGG - chr4_1:4296781-4296800 Msa0530250:CDS 55.0%
! GCCTTTTAGGCTTGAGGCTC+AGG + chr4_1:4296785-4296804 None:intergenic 55.0%
GCCTCAAGCCTAAAAGGCGA+AGG - chr4_1:4296787-4296806 Msa0530250:CDS 55.0%
! GCCTTCGCCTTTTAGGCTTG+AGG + chr4_1:4296791-4296810 None:intergenic 55.0%
! ATTGCGTTGGCGCTCCGTGA+AGG + chr4_1:4294087-4294106 None:intergenic 60.0%
TCCACTGCTTTGCGCCTGAC+TGG - chr4_1:4294276-4294295 Msa0530250:intron 60.0%
TCCAGTCAGGCGCAAAGCAG+TGG + chr4_1:4294280-4294299 None:intergenic 60.0%
CAGGTCACCGTCTCCGTTCA+GGG - chr4_1:4296158-4296177 Msa0530250:intron 60.0%
CCACTGACCCTGAACGGAGA+CGG + chr4_1:4296168-4296187 None:intergenic 60.0%
CCTGAACGGAGACGGTGACC+TGG + chr4_1:4296160-4296179 None:intergenic 65.0%
CCAGGTCACCGTCTCCGTTC+AGG - chr4_1:4296157-4296176 Msa0530250:intron 65.0%
CCGTCTCCGTTCAGGGTCAG+TGG - chr4_1:4296165-4296184 Msa0530250:intron 65.0%
GAAAGGGGCGAGGACCGGTT+TGG + chr4_1:4296612-4296631 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 4292087 4298643 4292087 ID=Msa0530250;Name=Msa0530250
chr4_1 mRNA 4292087 4298643 4292087 ID=Msa0530250-mRNA-1;Parent=Msa0530250;Name=Msa0530250-mRNA-1;_AED=0.08;_eAED=0.08;_QI=86|1|1|1|1|1|11|276|383
chr4_1 exon 4292087 4292402 4292087 ID=Msa0530250-mRNA-1:exon:1332;Parent=Msa0530250-mRNA-1
chr4_1 exon 4292502 4292645 4292502 ID=Msa0530250-mRNA-1:exon:1331;Parent=Msa0530250-mRNA-1
chr4_1 exon 4293642 4293717 4293642 ID=Msa0530250-mRNA-1:exon:1330;Parent=Msa0530250-mRNA-1
chr4_1 exon 4294670 4294740 4294670 ID=Msa0530250-mRNA-1:exon:1329;Parent=Msa0530250-mRNA-1
chr4_1 exon 4294982 4295053 4294982 ID=Msa0530250-mRNA-1:exon:1328;Parent=Msa0530250-mRNA-1
chr4_1 exon 4295866 4295993 4295866 ID=Msa0530250-mRNA-1:exon:1327;Parent=Msa0530250-mRNA-1
chr4_1 exon 4296217 4296293 4296217 ID=Msa0530250-mRNA-1:exon:1326;Parent=Msa0530250-mRNA-1
chr4_1 exon 4296377 4296470 4296377 ID=Msa0530250-mRNA-1:exon:1325;Parent=Msa0530250-mRNA-1
chr4_1 exon 4296595 4296680 4296595 ID=Msa0530250-mRNA-1:exon:1324;Parent=Msa0530250-mRNA-1
chr4_1 exon 4296777 4296852 4296777 ID=Msa0530250-mRNA-1:exon:1323;Parent=Msa0530250-mRNA-1
chr4_1 exon 4298270 4298643 4298270 ID=Msa0530250-mRNA-1:exon:1322;Parent=Msa0530250-mRNA-1
chr4_1 five_prime_UTR 4298558 4298643 4298558 ID=Msa0530250-mRNA-1:five_prime_utr;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4298270 4298557 4298270 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4296777 4296852 4296777 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4296595 4296680 4296595 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4296377 4296470 4296377 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4296217 4296293 4296217 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4295866 4295993 4295866 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4294982 4295053 4294982 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4294670 4294740 4294670 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4293642 4293717 4293642 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4292502 4292645 4292502 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 CDS 4292363 4292402 4292363 ID=Msa0530250-mRNA-1:cds;Parent=Msa0530250-mRNA-1
chr4_1 three_prime_UTR 4292087 4292362 4292087 ID=Msa0530250-mRNA-1:three_prime_utr;Parent=Msa0530250-mRNA-1
Gene Sequence

>Msa0530250

ATGGTGTTTTCTACTATGTATTCTCCAACACTAAACCTTGCTATTTCTTCAACTACTACAAACAACTGTAGCAGAAGAAGAGCATCAAGCACAAGTTCAAGCAGAGGAGTGAATAGTATCATAATCAGAGCTAGTTCTTCAGAGAAAAATGAATCCAAAAGCAATGATCAAGATGATAAATCATCATTCAACCCTTTTGGATTTGTTACTGATAATCCATCAAGCCGTAGTGCCATTCAATTGTCTGAAAATCCTGCTGAAGCTGGCAATGTTGGACAAATGATAGATAAAATACAAGACAAGGGCAAGGAATACGGATCATATGTAAAATCCGGGAAGTTGAGATGGTTTGTGAGGGAAACTGGGTCAGCAAAGAGTAGACGAGGAACAATTGTATTCCTTCACGGAGCGCCAACGCAATCTTTTAGCTACCGAGTTGTTATGTCTGAGTTGGCAGATACAGGGTTCCACTGCTTTGCGCCTGACTGGATAGGATTTGGTTTCAGTGACAAGCCACAGCCAGGATACGGTTTTAATTACACAGAAAAGGAGTTCCATGATGCATTGGATAAACTGCTTGAGGTGTTGGGGGTCGAGTCTCCGTTTTACCTAGTTGTTCAGGGATTTCTTGTAGGTTCATATGGACTGACCTGGGCCTTGAAGAATTCAAGCAAGATATCAAAGCTAGCAATACTAAACAGTCCATTAACAAGCTCATCTCCCATTCCTGGACTATTTCAGCAGCTAAGGTTCCCTCTATATGGTGAATTTCAATGCCAGAATGCTATTATTGCTGAGCGGTTTATTGAAAGAGGTAGCCCTTATGTTCTGAAAAATGAAAAGGCTGATGTTTATCGGTTACCTTATTTGGCAAGCAGTGGACCTGGATTTGCTCTACTTGAAGCAGCAAGAAAAGCCAACTTCAACGGTACTTTCAGTGAAATAGCAGAAGGATTTGCAACTAACAGATGGGATAAGCCGATAATGCTTGCTTGGGGGCTATCAGACAAGTACTTGCCACAGTCTATAGCAGAGGAGTTTCAAAAAGGAAATCCTCAAAACATCAAGCTTAAATTGATAGAAGGAGCTGGTCATATGCCACAAGAAGATTGGCCTGAGAAAGTTATTGATGCTTTGAGAATGTTCTTTTGA

Protein sequence

>Msa0530250

MVFSTMYSPTLNLAISSTTTNNCSRRRASSTSSSRGVNSIIIRASSSEKNESKSNDQDDKSSFNPFGFVTDNPSSRSAIQLSENPAEAGNVGQMIDKIQDKGKEYGSYVKSGKLRWFVRETGSAKSRRGTIVFLHGAPTQSFSYRVVMSELADTGFHCFAPDWIGFGFSDKPQPGYGFNYTEKEFHDALDKLLEVLGVESPFYLVVQGFLVGSYGLTWALKNSSKISKLAILNSPLTSSSPIPGLFQQLRFPLYGEFQCQNAIIAERFIERGSPYVLKNEKADVYRLPYLASSGPGFALLEAARKANFNGTFSEIAEGFATNRWDKPIMLAWGLSDKYLPQSIAEEFQKGNPQNIKLKLIEGAGHMPQEDWPEKVIDALRMFF*