AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066790 MtrunA17_Chr7g0247871 92.620 542 16 3 1 526 1 534 0.0 989
Msa1066790 MtrunA17_Chr8g0348761 71.644 596 91 8 1 526 1 588 0.0 815
Msa1066790 MtrunA17_Chr3g0104361 73.864 440 92 2 102 526 85 516 0.0 673
Msa1066790 MtrunA17_Chr7g0241591 39.303 402 233 3 127 525 113 506 2.68e-100 311
Msa1066790 MtrunA17_Chr4g0064801 38.343 519 270 12 39 522 21 524 2.59e-99 310
Msa1066790 MtrunA17_Chr5g0429461 38.272 405 235 3 127 524 194 590 1.63e-86 278
Msa1066790 MtrunA17_Chr2g0290941 94.286 140 0 1 350 489 1 132 1.75e-86 263
Msa1066790 MtrunA17_Chr4g0013731 35.841 452 237 8 118 526 2 443 9.04e-78 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066790 AT4G00370.1 72.973 555 107 7 1 526 1 541 0.0 771
Msa1066790 AT2G29650.1 71.492 449 104 3 94 526 72 512 0.0 657
Msa1066790 AT2G29650.3 77.000 400 84 1 127 526 9 400 0.0 640
Msa1066790 AT2G29650.4 76.884 398 84 1 129 526 1 390 0.0 635
Msa1066790 AT2G29650.2 69.419 327 84 2 94 404 72 398 4.08e-161 464
Msa1066790 AT2G38060.1 40.842 404 226 4 127 525 117 512 1.99e-102 317
Msa1066790 AT3G46980.1 40.394 406 226 4 127 524 130 527 9.81e-95 298
Msa1066790 AT3G46980.3 40.394 406 226 4 127 524 130 527 1.11e-94 298
Msa1066790 AT3G46980.4 40.394 406 226 4 127 524 178 575 1.37e-94 299
Msa1066790 AT5G20380.1 39.535 430 227 9 115 522 90 508 5.52e-92 291
Msa1066790 AT5G20380.2 39.535 430 227 9 115 522 142 560 2.05e-91 291
Msa1066790 AT2G38060.2 41.667 336 192 2 127 458 117 452 1.26e-87 281
Msa1066790 AT3G46980.5 38.873 355 201 4 178 524 1 347 1.32e-76 245
Msa1066790 AT3G46980.7 38.873 355 201 4 178 524 1 347 1.32e-76 245
Msa1066790 AT3G46980.8 38.873 355 201 4 178 524 1 347 1.36e-76 245
Msa1066790 AT3G46980.2 38.873 355 201 4 178 524 1 347 1.36e-76 245
Msa1066790 AT5G44370.1 34.940 415 245 6 127 526 28 432 2.04e-74 242
Msa1066790 AT3G46980.6 36.897 290 167 4 243 524 2 283 8.51e-54 184

Find 150 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATTATGCGTGCCTTTA+TGG 0.088357 7_2:+60924696 Msa1066790:CDS
TGCTCACGAGTTTCAATTTC+AGG 0.182035 7_2:+60926498 Msa1066790:CDS
CTTAGATTCTTGGTGGTATA+TGG 0.187897 7_2:+60924569 Msa1066790:intron
TTCTTGGAATGACGTGTTTA+AGG 0.216470 7_2:+60926697 Msa1066790:CDS
GGTGTGCTTGCTGGCGTCTT+TGG 0.227575 7_2:+60926550 Msa1066790:CDS
TTCACTTCTTTCATTGCTTC+AGG 0.233451 7_2:+60922672 Msa1066790:CDS
GAAGCATCTGGTTTGCCTTT+TGG 0.244662 7_2:+60925303 Msa1066790:CDS
AAGTTCAACCTCACTGAATC+TGG 0.253604 7_2:+60925779 Msa1066790:CDS
CTTATTATGCGTGCCTTTAT+GGG 0.279316 7_2:+60924697 Msa1066790:CDS
CAATGTCACAAGAGTTTAAC+TGG 0.281775 7_2:+60924379 Msa1066790:CDS
ACACCTATTGCTGCAAGAAT+TGG 0.294493 7_2:+60924661 Msa1066790:CDS
CTGATGGCCACCCAAGGTTT+TGG 0.299035 7_2:-60925256 None:intergenic
CAGAAAAGGTATTTGCAAAA+AGG 0.300898 7_2:-60927067 None:intergenic
CCGAGATCCGGGTCATCTTT+TGG 0.301202 7_2:-60925488 None:intergenic
ATGGCCGTGTTTGCAAATAT+TGG 0.302731 7_2:+60925830 Msa1066790:CDS
TTCTATCAAAAGCACCAGTT+TGG 0.314560 7_2:+60925585 Msa1066790:CDS
CATCTGTTTCGGACATTCCT+TGG 0.328614 7_2:+60925555 Msa1066790:CDS
TCTCTCATTTCTGCCACAAT+TGG 0.328674 7_2:+60925618 Msa1066790:CDS
GTCCAAGTGGATTCCAGTTT+CGG 0.337421 7_2:+60925151 Msa1066790:CDS
TACCTTTCGAACAGTTGTTA+TGG 0.353371 7_2:-60925891 None:intergenic
TCAATTTCAGGGCGTATTGC+TGG 0.355168 7_2:+60926510 Msa1066790:CDS
CATTTCAAATCAGTATTAGA+TGG 0.356536 7_2:+60926999 Msa1066790:three_prime_UTR
ATGCAATCAATCGGGTTTCT+AGG 0.357772 7_2:+60926069 Msa1066790:CDS
TCTGTTGCATTATACATAAT+AGG 0.358132 7_2:+60926722 Msa1066790:CDS
GATCTGCTTCTCTCCGAAAC+TGG 0.362948 7_2:-60925164 None:intergenic
CAAAAGGGTTACTCGCAATC+TGG 0.368248 7_2:-60923736 None:intergenic
CTCTCATTTCTGCCACAATT+GGG 0.368700 7_2:+60925619 Msa1066790:CDS
TTGGATCCCTTGGAAGCATC+TGG 0.370421 7_2:+60925291 Msa1066790:CDS
CTTGGACAGTATATTATTCA+TGG 0.377433 7_2:-60925135 None:intergenic
GGGAAGGTCGTGCTAGGATT+TGG 0.384068 7_2:+60924607 Msa1066790:CDS
GGCTCTTATGTGTTCTTCCA+TGG 0.389923 7_2:+60925801 Msa1066790:CDS
AATACAGCAGGTGTGCTTGC+TGG 0.392626 7_2:+60926541 Msa1066790:CDS
AACCTCACCGATTCCCATAA+AGG 0.393601 7_2:-60924710 None:intergenic
TCTATCAAAAGCACCAGTTT+GGG 0.404421 7_2:+60925586 Msa1066790:CDS
CAAAAGATGACCCGGATCTC+GGG 0.407606 7_2:+60925489 Msa1066790:CDS
GCAATTCTATTGGAAGGAAA+TGG 0.413376 7_2:+60923917 Msa1066790:CDS
ATACATCCCTTGCTATATAT+AGG 0.416319 7_2:-60926823 None:intergenic
GATGCCTACTTACTATAATC+AGG 0.418993 7_2:+60925664 Msa1066790:CDS
AACAGGCGAAGCAATTCTAT+TGG 0.419363 7_2:+60923907 Msa1066790:CDS
GTCTTTGGCACAGCTGCAAC+TGG 0.422764 7_2:+60926565 Msa1066790:CDS
TTAGATTCTTGGTGGTATAT+GGG 0.425597 7_2:+60924570 Msa1066790:intron
CACCTATTGCTGCAAGAATT+GGG 0.432187 7_2:+60924662 Msa1066790:CDS
CCTTGGTTCTGTGGTAGGCT+TGG 0.435784 7_2:+60925214 Msa1066790:CDS
ATGTACCTTGGTTCTGTGGT+AGG 0.451338 7_2:+60925209 Msa1066790:CDS
TGGCAGATCATGCAATCAAT+CGG 0.452349 7_2:+60926060 Msa1066790:intron
CAATTTCAGGGCGTATTGCT+GGG 0.455105 7_2:+60926511 Msa1066790:CDS
TGCTAGGATTTGGAGTTGTA+TGG 0.455824 7_2:+60924617 Msa1066790:CDS
CCAAAAGATGACCCGGATCT+CGG 0.456410 7_2:+60925488 Msa1066790:CDS
ATGCGTGCCTTTATGGGAAT+CGG 0.457296 7_2:+60924703 Msa1066790:CDS
ATTGAACAAAGAGAAGTATA+CGG 0.459678 7_2:+60923776 Msa1066790:CDS
ATTGTGCATGGCATGCAGTC+AGG 0.462532 7_2:+60926146 Msa1066790:CDS
TCGGATGCCTTCTCACAGTC+TGG 0.475944 7_2:+60926307 Msa1066790:CDS
CTCCGAAACTGGAATCCACT+TGG 0.479863 7_2:-60925153 None:intergenic
AGCCCAATTCTTGCAGCAAT+AGG 0.485315 7_2:-60924664 None:intergenic
GGCAGCAACTTCCTAAGCGC+TGG 0.486573 7_2:+60923960 Msa1066790:CDS
TATTCCAATCATCAAGACAT+TGG 0.488754 7_2:+60926334 Msa1066790:CDS
CGTATCGAAAACATCTGTTT+CGG 0.489579 7_2:+60925544 Msa1066790:CDS
ATATATTCTAACATGTGATA+AGG 0.492149 7_2:+60922570 Msa1066790:five_prime_UTR
ATTAAACCACTTATAGCCAT+TGG 0.496105 7_2:-60922636 None:intergenic
ACATAATAGGCACACTGGTA+TGG 0.496734 7_2:+60926735 Msa1066790:CDS
GAAAGAAGTGAAGCTTCTGT+TGG 0.499201 7_2:-60922661 None:intergenic
GTGGCATCTGATGAAGGAAC+AGG 0.503282 7_2:+60923890 Msa1066790:CDS
CTGGGGCTATCTACTTACTC+AGG 0.504684 7_2:+60924440 Msa1066790:CDS
TGGTCCAATGTCTTGATGAT+TGG 0.505896 7_2:-60926338 None:intergenic
TTTCCTCTACCCCGAGATCC+GGG 0.506435 7_2:-60925499 None:intergenic
CCCTCCAATATTTGCAAACA+CGG 0.508594 7_2:-60925834 None:intergenic
GCTCACGAGTTTCAATTTCA+GGG 0.508678 7_2:+60926499 Msa1066790:CDS
AGGCAAACCAGATGCTTCCA+AGG 0.509648 7_2:-60925298 None:intergenic
TTTGATAGAATTAATTTCCA+AGG 0.514333 7_2:-60925572 None:intergenic
CAGTTAAACTCTTGTGACAT+TGG 0.514473 7_2:-60924378 None:intergenic
GACAGTATATTATTCATGGC+GGG 0.516181 7_2:-60925131 None:intergenic
ATGGTTCGCTGGTATCTCCT+TGG 0.520372 7_2:+60923936 Msa1066790:CDS
TATTATCAACATAGCACCAA+TGG 0.522591 7_2:+60922620 Msa1066790:exon
AAAGTGAGAAGTTAAAATCA+AGG 0.525786 7_2:-60926885 None:intergenic
TTCTTATCCAAAACCTTGGG+TGG 0.525807 7_2:+60925249 Msa1066790:CDS
GAGATTATAAGAGCCCAAAC+TGG 0.527723 7_2:-60925599 None:intergenic
TGACCCGGATCTCGGGGTAG+AGG 0.528268 7_2:+60925496 Msa1066790:CDS
TATATTATTCATGGCGGGCA+TGG 0.532851 7_2:-60925126 None:intergenic
GGTATATGGGCAGACAAACT+TGG 0.535648 7_2:+60924583 Msa1066790:CDS
GATCCTGTGGCATCTGATGA+AGG 0.540723 7_2:+60923884 Msa1066790:CDS
ATATATTTCAAGTTTGATTG+TGG 0.540761 7_2:-60927147 None:intergenic
ATTACGATAAGCCAGCGCTT+AGG 0.542049 7_2:-60923971 None:intergenic
GGCAGATCATGCAATCAATC+GGG 0.542373 7_2:+60926061 Msa1066790:intron
ACCTTTGCTAACTAACGTGT+CGG 0.543679 7_2:-60925864 None:intergenic
TGGAGTTGTATGGTGGTCAA+TGG 0.544883 7_2:+60924627 Msa1066790:CDS
GAATAAATGTTCCCCAATTG+TGG 0.546749 7_2:-60925631 None:intergenic
GTATATAGCGGCATGTACCT+TGG 0.546888 7_2:+60925197 Msa1066790:CDS
GTTCGCTGGTATCTCCTTGG+TGG 0.550695 7_2:+60923939 Msa1066790:CDS
CAAAGAGAAGTATACGGACT+AGG 0.551941 7_2:+60923782 Msa1066790:CDS
CTTGGTGGGAAGGTCGTGCT+AGG 0.552485 7_2:+60924601 Msa1066790:CDS
CGGCATGTACCTTGGTTCTG+TGG 0.552939 7_2:+60925205 Msa1066790:CDS
TTCCATAACAACTGTTCGAA+AGG 0.559878 7_2:+60925889 Msa1066790:CDS
TCTCATTTCTGCCACAATTG+GGG 0.559881 7_2:+60925620 Msa1066790:CDS
AAATGTATATCAGTTAAGAA+AGG 0.560962 7_2:+60923667 Msa1066790:CDS
ATGCACAATACTGCCATGGC+GGG 0.561244 7_2:-60926132 None:intergenic
TGAAGAGTGTGATGATGTAA+AGG 0.564550 7_2:+60926791 Msa1066790:exon
ATGTATAGAGAGAGATACCA+TGG 0.565302 7_2:+60926840 Msa1066790:three_prime_UTR
GGCGAAGCAATTCTATTGGA+AGG 0.565577 7_2:+60923911 Msa1066790:CDS
TAATTTCAGACTGTCATGCA+TGG 0.565924 7_2:-60922531 None:intergenic
GAACATTTATTCTATTAACA+TGG 0.567906 7_2:+60925642 Msa1066790:CDS
CGCCATGGCAGTATTGTGCA+TGG 0.568359 7_2:+60926134 Msa1066790:CDS
AGTTCAACCTCACTGAATCT+GGG 0.568787 7_2:+60925780 Msa1066790:CDS
ATTGGAAGGAAATGGTTCGC+TGG 0.569594 7_2:+60923925 Msa1066790:CDS
AGAAGTTAAAATCAAGGCCA+CGG 0.579729 7_2:-60926879 None:intergenic
CCATGTCAAAACACCCGCCA+TGG 0.580413 7_2:+60926119 Msa1066790:CDS
GGCAGACAAACTTGGTGGGA+AGG 0.582949 7_2:+60924591 Msa1066790:CDS
GCCGTGTTTGCAAATATTGG+AGG 0.583856 7_2:+60925833 Msa1066790:CDS
CTGGGACTATCGAATACAGC+AGG 0.588965 7_2:+60926529 Msa1066790:CDS
ATAACCTGATTATAGTAAGT+AGG 0.589115 7_2:-60925668 None:intergenic
CCAAATGAGTAAAACACTGA+TGG 0.590761 7_2:-60925272 None:intergenic
ATAGCACCAATGGCTATAAG+TGG 0.591240 7_2:+60922630 Msa1066790:exon
GGCAAACCAGATGCTTCCAA+GGG 0.591797 7_2:-60925297 None:intergenic
GTTCCTTCATCAGATGCCAC+AGG 0.595225 7_2:-60923887 None:intergenic
AATATTTGCAAACACGGCCA+TGG 0.597293 7_2:-60925828 None:intergenic
AACTGGAACAGTGCAACAGT+TGG 0.597654 7_2:+60924396 Msa1066790:CDS
TGTGTGGCCTATATATAGCA+AGG 0.599611 7_2:+60926816 Msa1066790:three_prime_UTR
TGTTCTTCCATGGTTAACCA+TGG 0.609195 7_2:+60925811 Msa1066790:CDS
TTTGCATCTAAAGTAAGCAA+AGG 0.609849 7_2:+60926936 Msa1066790:three_prime_UTR
CTGCACATAAAATTTGACAC+AGG 0.612237 7_2:+60927087 Msa1066790:three_prime_UTR
TGCCATGCACAATACTGCCA+TGG 0.612350 7_2:-60926136 None:intergenic
TGAGAACTGAAAGGTGAGAG+TGG 0.622436 7_2:-60922593 None:intergenic
ATGTTCTTATAAACTGAGTG+TGG 0.623337 7_2:-60927039 None:intergenic
TATGGGCAGACAAACTTGGT+GGG 0.623534 7_2:+60924587 Msa1066790:CDS
TAGATGCAAACTCACTTCAG+AGG 0.627690 7_2:-60926923 None:intergenic
ATATGGGCAGACAAACTTGG+TGG 0.628033 7_2:+60924586 Msa1066790:CDS
TGAATAATATACTGTCCAAG+TGG 0.631779 7_2:+60925138 Msa1066790:CDS
TAGGATTTGGAGTTGTATGG+TGG 0.635420 7_2:+60924620 Msa1066790:CDS
TAGCTCACCAAAAGATGACC+CGG 0.637431 7_2:+60925481 Msa1066790:CDS
AACACGGCCATGGTTAACCA+TGG 0.638076 7_2:-60925818 None:intergenic
ATTATACATAATAGGCACAC+TGG 0.640114 7_2:+60926730 Msa1066790:CDS
AAAAGATGACCCGGATCTCG+GGG 0.643756 7_2:+60925490 Msa1066790:CDS
ATAAAGACCAGACTGTGAGA+AGG 0.653878 7_2:-60926314 None:intergenic
CCGTGTTTGCAAATATTGGA+GGG 0.658652 7_2:+60925834 Msa1066790:CDS
TGTTTGCAAATATTGGAGGG+TGG 0.661112 7_2:+60925837 Msa1066790:CDS
GCACGCATAATAAGCAAACA+AGG 0.665091 7_2:-60924688 None:intergenic
AAAACACTGATGGCCACCCA+AGG 0.665588 7_2:-60925262 None:intergenic
ACTGGATACATACTTCAAAG+AGG 0.666637 7_2:+60926583 Msa1066790:CDS
GTGTGGCCTATATATAGCAA+GGG 0.666762 7_2:+60926817 Msa1066790:three_prime_UTR
AAGGATCTATCACTTCAAAG+AGG 0.667820 7_2:+60923686 Msa1066790:CDS
GGACAGTATATTATTCATGG+CGG 0.671998 7_2:-60925132 None:intergenic
ATATGACATTGATGAAACGA+AGG 0.676264 7_2:+60923859 Msa1066790:CDS
TGCCTTTATGGGAATCGGTG+AGG 0.677573 7_2:+60924708 Msa1066790:CDS
TCACTTTCGCTAGTATATAG+CGG 0.679969 7_2:+60925185 Msa1066790:CDS
TTAGGAAGTTGCTGCCACCA+AGG 0.680539 7_2:-60923953 None:intergenic
TGAAACGAAGGTAGATCCTG+TGG 0.681518 7_2:+60923871 Msa1066790:CDS
TGATGATGTAAAGGAATGTG+TGG 0.694227 7_2:+60926800 Msa1066790:three_prime_UTR
CATGCACAATACTGCCATGG+CGG 0.706051 7_2:-60926133 None:intergenic
CCAAGCCTACCACAGAACCA+AGG 0.711808 7_2:-60925214 None:intergenic
AAATTACTCACAGCATAACG+TGG 0.722801 7_2:-60926358 None:intergenic
ATAAGAGCCCAGATTCAGTG+AGG 0.769613 7_2:-60925787 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTAAATAAAAAAATT+TGG + chr7_2:60922783-60922802 Msa1066790:intron 0.0%
!!! TTATTTTTTTTATTTTTTTT+TGG - chr7_2:60923240-60923259 None:intergenic 0.0%
!! AAAAAATAAAATGAATTTAG+TGG - chr7_2:60922725-60922744 None:intergenic 10.0%
!!! TTTTAAATAAAAAAATTTGG+TGG + chr7_2:60922786-60922805 Msa1066790:intron 10.0%
!! CTGTAAAAAAAAAAAAATTA+TGG - chr7_2:60926284-60926303 None:intergenic 10.0%
!!! CATAATTTTTTTTTTTTTAC+AGG + chr7_2:60926282-60926301 Msa1066790:intron 10.0%
!! AAAAATTAATACAAAAAGAC+AGG - chr7_2:60922882-60922901 None:intergenic 15.0%
!!! TGATATTTTGATAAAAACTA+TGG + chr7_2:60923052-60923071 Msa1066790:intron 15.0%
!!! ATTTTGTAGTTTTTTTCTTA+GGG - chr7_2:60923173-60923192 None:intergenic 15.0%
!! AAAATAAAAAAAATAACACG+TGG + chr7_2:60923244-60923263 Msa1066790:intron 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG + chr7_2:60923357-60923376 Msa1066790:intron 15.0%
!! CTTAATATATATGGATAATA+TGG + chr7_2:60926040-60926059 Msa1066790:intron 15.0%
!! AAAAAATTATGGTTTGAATT+AGG - chr7_2:60926273-60926292 None:intergenic 15.0%
!! ATATATTCTAACATGTGATA+AGG + chr7_2:60922570-60922589 Msa1066790:five_prime_UTR 20.0%
!! TAATAAAAATGAGAACTGAA+AGG - chr7_2:60922605-60922624 None:intergenic 20.0%
!! TAATACAATTCATAAAATGC+TGG - chr7_2:60922815-60922834 None:intergenic 20.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG - chr7_2:60923172-60923191 None:intergenic 20.0%
!!! GATTTTGTAGTTTTTTTCTT+AGG - chr7_2:60923174-60923193 None:intergenic 20.0%
!!! TTTTATTTTTTTTTGGCCTT+GGG - chr7_2:60923233-60923252 None:intergenic 20.0%
!!! TTTTTATTTTTTTTTGGCCT+TGG - chr7_2:60923234-60923253 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG + chr7_2:60923356-60923375 Msa1066790:intron 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG + chr7_2:60923358-60923377 Msa1066790:intron 20.0%
!! CATTACTCTAATTAAAGTAA+AGG - chr7_2:60923433-60923452 None:intergenic 20.0%
!! TACAATCATATTTACAAATG+AGG - chr7_2:60923625-60923644 None:intergenic 20.0%
!! AAATGTATATCAGTTAAGAA+AGG + chr7_2:60923667-60923686 Msa1066790:CDS 20.0%
!! ATATGAAATCAATTCTTGTT+AGG - chr7_2:60924501-60924520 None:intergenic 20.0%
!! ATAACATTGTTATGTTATGA+TGG + chr7_2:60924536-60924555 Msa1066790:intron 20.0%
!!! TTTTTTTCTTCTTAGATTCT+TGG + chr7_2:60924559-60924578 Msa1066790:intron 20.0%
!!! AGAATTATTTTGTGTTAAGA+GGG - chr7_2:60925083-60925102 None:intergenic 20.0%
!!! TAGAATTATTTTGTGTTAAG+AGG - chr7_2:60925084-60925103 None:intergenic 20.0%
!!! AATTCTAACTATTTGTTTTC+AGG + chr7_2:60925097-60925116 Msa1066790:intron 20.0%
!!! ATTCTAACTATTTGTTTTCA+GGG + chr7_2:60925098-60925117 Msa1066790:intron 20.0%
!! ACTATTCATGATATGTTAAA+TGG + chr7_2:60925399-60925418 Msa1066790:intron 20.0%
!! TTTGATAGAATTAATTTCCA+AGG - chr7_2:60925575-60925594 None:intergenic 20.0%
!! GAACATTTATTCTATTAACA+TGG + chr7_2:60925642-60925661 Msa1066790:CDS 20.0%
!! AAATGTATTATACAAAGCAT+AGG - chr7_2:60925697-60925716 None:intergenic 20.0%
!! TATTCTGCTCTTAATATATA+TGG + chr7_2:60926031-60926050 Msa1066790:intron 20.0%
!!! TTTTTTTTTTTTACAGGGAT+CGG + chr7_2:60926288-60926307 Msa1066790:intron 20.0%
!! CTTTGCAATTTATATATCAT+TGG + chr7_2:60926644-60926663 Msa1066790:intron 20.0%
!!! TATGGAATATATTTTCTACT+GGG + chr7_2:60926753-60926772 Msa1066790:CDS 20.0%
!!! ATATATTTCAAGTTTGATTG+TGG - chr7_2:60927150-60927169 None:intergenic 20.0%
! CTTTCTTTGTAGTTTACTTT+AGG + chr7_2:60923098-60923117 Msa1066790:intron 25.0%
!!! TTTATTTTTTTTTGGCCTTG+GGG - chr7_2:60923232-60923251 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG + chr7_2:60923359-60923378 Msa1066790:intron 25.0%
!! CAAAGCATGGATATTATTTT+AGG + chr7_2:60923467-60923486 Msa1066790:intron 25.0%
! AGGACTTGTATAAATTAGTT+TGG + chr7_2:60923487-60923506 Msa1066790:intron 25.0%
!!! GGATCACTATATTTTAAACT+AGG + chr7_2:60923549-60923568 Msa1066790:intron 25.0%
! TTGTAGTAACTCTTTGATAT+TGG + chr7_2:60923640-60923659 Msa1066790:intron 25.0%
!! ATTGAACAAAGAGAAGTATA+CGG + chr7_2:60923776-60923795 Msa1066790:CDS 25.0%
! TCCTTCATATTGTAATATAC+AGG + chr7_2:60924332-60924351 Msa1066790:intron 25.0%
! ACCTGTATATTACAATATGA+AGG - chr7_2:60924336-60924355 None:intergenic 25.0%
! AGAAAAAAGATGACTGAATT+AGG - chr7_2:60924422-60924441 None:intergenic 25.0%
!!! TAATTCAGTCATCTTTTTTC+TGG + chr7_2:60924421-60924440 Msa1066790:CDS 25.0%
!!! AATTCAGTCATCTTTTTTCT+GGG + chr7_2:60924422-60924441 Msa1066790:CDS 25.0%
! TAACATAACAATGTTATGCT+AGG - chr7_2:60924533-60924552 None:intergenic 25.0%
! TTCATAGCAAAACTGATAAT+TGG - chr7_2:60924817-60924836 None:intergenic 25.0%
!! AAGATAGTTTCTCTTTTGAA+TGG + chr7_2:60924905-60924924 Msa1066790:intron 25.0%
! TAACATATAAATACAGCTTG+TGG - chr7_2:60924987-60925006 None:intergenic 25.0%
! GTAGATTTCATCGAAATTAA+GGG - chr7_2:60925351-60925370 None:intergenic 25.0%
! AGTAGATTTCATCGAAATTA+AGG - chr7_2:60925352-60925371 None:intergenic 25.0%
! ACATATCATGAATAGTGATA+TGG - chr7_2:60925395-60925414 None:intergenic 25.0%
! TTCATGATATGTTAAATGGA+AGG + chr7_2:60925403-60925422 Msa1066790:intron 25.0%
! TCATGATATGTTAAATGGAA+GGG + chr7_2:60925404-60925423 Msa1066790:intron 25.0%
! ATAACCTGATTATAGTAAGT+AGG - chr7_2:60925671-60925690 None:intergenic 25.0%
!!! AAATTAGCTTGTTGATTCAA+TGG - chr7_2:60925740-60925759 None:intergenic 25.0%
!!! AGCTAATTTGTCATTTTATC+AGG + chr7_2:60925751-60925770 Msa1066790:intron 25.0%
! ATTTGTAATAGTTGTTGATC+TGG - chr7_2:60925949-60925968 None:intergenic 25.0%
! ATTTGAGGAATTCAAACTAA+AGG - chr7_2:60926193-60926212 None:intergenic 25.0%
!! AGTTTGAATTCCTCAAATTT+TGG + chr7_2:60926195-60926214 Msa1066790:intron 25.0%
! AAATTATGGTTTGAATTAGG+TGG - chr7_2:60926270-60926289 None:intergenic 25.0%
!! TATATGTGATTTTTCATTGC+AGG + chr7_2:60926674-60926693 Msa1066790:intron 25.0%
! TCTGTTGCATTATACATAAT+AGG + chr7_2:60926722-60926741 Msa1066790:CDS 25.0%
!! GTATGGAATATATTTTCTAC+TGG + chr7_2:60926752-60926771 Msa1066790:CDS 25.0%
!! ATGGAATATATTTTCTACTG+GGG + chr7_2:60926754-60926773 Msa1066790:CDS 25.0%
! AAAGTGAGAAGTTAAAATCA+AGG - chr7_2:60926888-60926907 None:intergenic 25.0%
! CATTTCAAATCAGTATTAGA+TGG + chr7_2:60926999-60927018 Msa1066790:three_prime_UTR 25.0%
!!! AGAAAAGGTATTTGCAAAAA+GGG - chr7_2:60927069-60927088 None:intergenic 25.0%
!! TCAAATTTTATGTGCAGAAA+AGG - chr7_2:60927084-60927103 None:intergenic 25.0%
!! AATAGACAATGTTTTACATG+TGG - chr7_2:60927119-60927138 None:intergenic 25.0%
TATTATCAACATAGCACCAA+TGG + chr7_2:60922620-60922639 Msa1066790:exon 30.0%
ATTAAACCACTTATAGCCAT+TGG - chr7_2:60922639-60922658 None:intergenic 30.0%
TAGTGGAAAATTGAAAGTGA+TGG - chr7_2:60922708-60922727 None:intergenic 30.0%
! ATTTTCCCACAAACTTTTCA+TGG + chr7_2:60922955-60922974 Msa1066790:intron 30.0%
TCTTACCATGAAAAGTTTGT+GGG - chr7_2:60922963-60922982 None:intergenic 30.0%
TATTGCCACCATACATAAAA+GGG - chr7_2:60923011-60923030 None:intergenic 30.0%
ATATTGCCACCATACATAAA+AGG - chr7_2:60923012-60923031 None:intergenic 30.0%
TGCTACAAATGCAAAACTTA+GGG - chr7_2:60923200-60923219 None:intergenic 30.0%
! TTTTGCATTTGTAGCAGTTT+TGG + chr7_2:60923204-60923223 Msa1066790:intron 30.0%
!!! TTATTTTTTTTTGGCCTTGG+GGG - chr7_2:60923231-60923250 None:intergenic 30.0%
CCACATAAACCAAAATTAGA+GGG - chr7_2:60923531-60923550 None:intergenic 30.0%
TCCACATAAACCAAAATTAG+AGG - chr7_2:60923532-60923551 None:intergenic 30.0%
! ACTAGGCTTAAATGTAGTTT+TGG + chr7_2:60923566-60923585 Msa1066790:intron 30.0%
!!! GACTTCTACTTTTTGCAAAA+GGG - chr7_2:60923754-60923773 None:intergenic 30.0%
!!! TGACTTCTACTTTTTGCAAA+AGG - chr7_2:60923755-60923774 None:intergenic 30.0%
ATATGACATTGATGAAACGA+AGG + chr7_2:60923859-60923878 Msa1066790:CDS 30.0%
! AGCTTTTCTTTTATGCAACA+TGG + chr7_2:60924006-60924025 Msa1066790:intron 30.0%
CTATGTGTACAATGTATGTT+TGG + chr7_2:60924070-60924089 Msa1066790:intron 30.0%
TGTACAATGTATGTTTGGAT+TGG + chr7_2:60924075-60924094 Msa1066790:intron 30.0%
AAGATATATGACAGTGTGTT+TGG - chr7_2:60924221-60924240 None:intergenic 30.0%
! TACATTCGAAATTTGAGACA+TGG - chr7_2:60924252-60924271 None:intergenic 30.0%
!!! ATTCAGTCATCTTTTTTCTG+GGG + chr7_2:60924423-60924442 Msa1066790:CDS 30.0%
! TTTTCTTCTTAGATTCTTGG+TGG + chr7_2:60924562-60924581 Msa1066790:intron 30.0%
! TTAGATTCTTGGTGGTATAT+GGG + chr7_2:60924570-60924589 Msa1066790:intron 30.0%
TTTGCATAACACGAAAAAGA+TGG - chr7_2:60924793-60924812 None:intergenic 30.0%
AAGAGAAACTATCTTCGATT+TGG - chr7_2:60924900-60924919 None:intergenic 30.0%
TTAGTAAGCTATACTCTACA+CGG - chr7_2:60924946-60924965 None:intergenic 30.0%
CTTGGACAGTATATTATTCA+TGG - chr7_2:60925138-60925157 None:intergenic 30.0%
TGAATAATATACTGTCCAAG+TGG + chr7_2:60925138-60925157 Msa1066790:CDS 30.0%
! CTTTTCTTATCCAAAACCTT+GGG + chr7_2:60925246-60925265 Msa1066790:CDS 30.0%
!! ACTTACTTTTCTCAACCAAA+AGG - chr7_2:60925321-60925340 None:intergenic 30.0%
CATGATATGTTAAATGGAAG+GGG + chr7_2:60925405-60925424 Msa1066790:intron 30.0%
GACAATATTTCAGTAACAAG+TGG - chr7_2:60925923-60925942 None:intergenic 30.0%
!! CATAAAAGTGCCAAAATTTG+AGG - chr7_2:60926208-60926227 None:intergenic 30.0%
CATATGCAAACATGTTGTAT+TGG - chr7_2:60926231-60926250 None:intergenic 30.0%
TATTCCAATCATCAAGACAT+TGG + chr7_2:60926334-60926353 Msa1066790:CDS 30.0%
! CTATGAAATTTTACTGGTCA+TGG - chr7_2:60926396-60926415 None:intergenic 30.0%
ATTATACATAATAGGCACAC+TGG + chr7_2:60926730-60926749 Msa1066790:CDS 30.0%
! ATACATCCCTTGCTATATAT+AGG - chr7_2:60926826-60926845 None:intergenic 30.0%
! TTTGCATCTAAAGTAAGCAA+AGG + chr7_2:60926936-60926955 Msa1066790:three_prime_UTR 30.0%
ATGTTCTTATAAACTGAGTG+TGG - chr7_2:60927042-60927061 None:intergenic 30.0%
!! AAAAGGTATTTGCAAAAAGG+GGG - chr7_2:60927067-60927086 None:intergenic 30.0%
!! GAAAAGGTATTTGCAAAAAG+GGG - chr7_2:60927068-60927087 None:intergenic 30.0%
!! CAGAAAAGGTATTTGCAAAA+AGG - chr7_2:60927070-60927089 None:intergenic 30.0%
TAATTTCAGACTGTCATGCA+TGG - chr7_2:60922534-60922553 None:intergenic 35.0%
TTCACTTCTTTCATTGCTTC+AGG + chr7_2:60922672-60922691 Msa1066790:CDS 35.0%
TGGAAAATTGAAAGTGATGG+AGG - chr7_2:60922705-60922724 None:intergenic 35.0%
CTCTTACCATGAAAAGTTTG+TGG - chr7_2:60922964-60922983 None:intergenic 35.0%
! CACAAACTTTTCATGGTAAG+AGG + chr7_2:60922962-60922981 Msa1066790:intron 35.0%
TCGCAACTTCGTTAAAGTTA+GGG - chr7_2:60923143-60923162 None:intergenic 35.0%
ATCGCAACTTCGTTAAAGTT+AGG - chr7_2:60923144-60923163 None:intergenic 35.0%
! CTTTAACGAAGTTGCGATTT+TGG + chr7_2:60923146-60923165 Msa1066790:intron 35.0%
CTACAAATGCAAAACTTAGG+GGG - chr7_2:60923198-60923217 None:intergenic 35.0%
GCTACAAATGCAAAACTTAG+GGG - chr7_2:60923199-60923218 None:intergenic 35.0%
CTGCTACAAATGCAAAACTT+AGG - chr7_2:60923201-60923220 None:intergenic 35.0%
!!! TATTTTTTTTTGGCCTTGGG+GGG - chr7_2:60923230-60923249 None:intergenic 35.0%
CAAAATTAGAGGGTTTCAAG+AGG - chr7_2:60923521-60923540 None:intergenic 35.0%
! CTCTTGAAACCCTCTAATTT+TGG + chr7_2:60923519-60923538 Msa1066790:intron 35.0%
!!! CCCTCTAATTTTGGTTTATG+TGG + chr7_2:60923528-60923547 Msa1066790:intron 35.0%
AGTAACTCTTTGATATTGGC+AGG + chr7_2:60923644-60923663 Msa1066790:intron 35.0%
AAGGATCTATCACTTCAAAG+AGG + chr7_2:60923686-60923705 Msa1066790:CDS 35.0%
GCAATTCTATTGGAAGGAAA+TGG + chr7_2:60923917-60923936 Msa1066790:CDS 35.0%
ACCAAGATAAGATACTCACA+CGG - chr7_2:60924033-60924052 None:intergenic 35.0%
!! ATGTATGTTTGGATTGGTGA+CGG + chr7_2:60924081-60924100 Msa1066790:intron 35.0%
AGAATCACAGTGCAAAATCA+CGG - chr7_2:60924180-60924199 None:intergenic 35.0%
CAGTTAAACTCTTGTGACAT+TGG - chr7_2:60924381-60924400 None:intergenic 35.0%
CAATGTCACAAGAGTTTAAC+TGG + chr7_2:60924379-60924398 Msa1066790:CDS 35.0%
! CTTAGATTCTTGGTGGTATA+TGG + chr7_2:60924569-60924588 Msa1066790:intron 35.0%
CTTATTATGCGTGCCTTTAT+GGG + chr7_2:60924697-60924716 Msa1066790:CDS 35.0%
GTTTCCAGTAACTAGTCATA+TGG + chr7_2:60924758-60924777 Msa1066790:intron 35.0%
! CTAACCATATGACTAGTTAC+TGG - chr7_2:60924765-60924784 None:intergenic 35.0%
GACAGTATATTATTCATGGC+GGG - chr7_2:60925134-60925153 None:intergenic 35.0%
GGACAGTATATTATTCATGG+CGG - chr7_2:60925135-60925154 None:intergenic 35.0%
TCACTTTCGCTAGTATATAG+CGG + chr7_2:60925185-60925204 Msa1066790:CDS 35.0%
!!! CCAAGGTTTTGGATAAGAAA+AGG - chr7_2:60925248-60925267 None:intergenic 35.0%
! CCTTTTCTTATCCAAAACCT+TGG + chr7_2:60925245-60925264 Msa1066790:CDS 35.0%
CCAAATGAGTAAAACACTGA+TGG - chr7_2:60925275-60925294 None:intergenic 35.0%
! CCATCAGTGTTTTACTCATT+TGG + chr7_2:60925272-60925291 Msa1066790:CDS 35.0%
! TTTTACTCATTTGGATCCCT+TGG + chr7_2:60925281-60925300 Msa1066790:CDS 35.0%
TACTTGCCAAGAAAGAACAA+AGG - chr7_2:60925438-60925457 None:intergenic 35.0%
AGTAAACTCATTTCCTTTCC+AGG + chr7_2:60925454-60925473 Msa1066790:intron 35.0%
GAAAAAAAGCTCATCCTTGA+AGG + chr7_2:60925518-60925537 Msa1066790:CDS 35.0%
CGTATCGAAAACATCTGTTT+CGG + chr7_2:60925544-60925563 Msa1066790:CDS 35.0%
!! TTCTATCAAAAGCACCAGTT+TGG + chr7_2:60925585-60925604 Msa1066790:CDS 35.0%
!! TCTATCAAAAGCACCAGTTT+GGG + chr7_2:60925586-60925605 Msa1066790:CDS 35.0%
GAATAAATGTTCCCCAATTG+TGG - chr7_2:60925634-60925653 None:intergenic 35.0%
GATGCCTACTTACTATAATC+AGG + chr7_2:60925664-60925683 Msa1066790:CDS 35.0%
TTCCATAACAACTGTTCGAA+AGG + chr7_2:60925889-60925908 Msa1066790:CDS 35.0%
TACCTTTCGAACAGTTGTTA+TGG - chr7_2:60925894-60925913 None:intergenic 35.0%
TTAACAGAATGCCGTATAGA+AGG + chr7_2:60925976-60925995 Msa1066790:intron 35.0%
CCGAACAATTTCCTTCTATA+CGG - chr7_2:60925990-60926009 None:intergenic 35.0%
CCGTATAGAAGGAAATTGTT+CGG + chr7_2:60925987-60926006 Msa1066790:intron 35.0%
AAATTACTCACAGCATAACG+TGG - chr7_2:60926361-60926380 None:intergenic 35.0%
! CACGCACTATGAAATTTTAC+TGG - chr7_2:60926402-60926421 None:intergenic 35.0%
TTTCATAGTGCGTGAAATTC+TGG + chr7_2:60926408-60926427 Msa1066790:intron 35.0%
! CTGAGTGATGACTTGTATAA+TGG - chr7_2:60926442-60926461 None:intergenic 35.0%
ACTGGATACATACTTCAAAG+AGG + chr7_2:60926583-60926602 Msa1066790:CDS 35.0%
AAATGAATGTGGAGAACTCT+CGG - chr7_2:60926610-60926629 None:intergenic 35.0%
AGAGTTCTCCACATTCATTT+CGG + chr7_2:60926610-60926629 Msa1066790:intron 35.0%
TGTAAACTCCGAAATGAATG+TGG - chr7_2:60926621-60926640 None:intergenic 35.0%
! GATTTTTCATTGCAGGTTCT+TGG + chr7_2:60926681-60926700 Msa1066790:intron 35.0%
TTCTTGGAATGACGTGTTTA+AGG + chr7_2:60926697-60926716 Msa1066790:CDS 35.0%
! TGAAGAGTGTGATGATGTAA+AGG + chr7_2:60926791-60926810 Msa1066790:exon 35.0%
! TGATGATGTAAAGGAATGTG+TGG + chr7_2:60926800-60926819 Msa1066790:three_prime_UTR 35.0%
ATGTATAGAGAGAGATACCA+TGG + chr7_2:60926840-60926859 Msa1066790:three_prime_UTR 35.0%
!!! GTTTTTGGTGAAAACTTCCA+TGG - chr7_2:60926860-60926879 None:intergenic 35.0%
AGAAGTTAAAATCAAGGCCA+CGG - chr7_2:60926882-60926901 None:intergenic 35.0%
CTGCACATAAAATTTGACAC+AGG + chr7_2:60927087-60927106 Msa1066790:three_prime_UTR 35.0%
! GACAATGTTTTACATGTGGA+AGG - chr7_2:60927115-60927134 None:intergenic 35.0%
ATAGCACCAATGGCTATAAG+TGG + chr7_2:60922630-60922649 Msa1066790:exon 40.0%
GAAAGAAGTGAAGCTTCTGT+TGG - chr7_2:60922664-60922683 None:intergenic 40.0%
CATAAAAGGGTCATCAGCAT+TGG - chr7_2:60922998-60923017 None:intergenic 40.0%
! GCTGATGACCCTTTTATGTA+TGG + chr7_2:60923000-60923019 Msa1066790:intron 40.0%
! GATGACCCTTTTATGTATGG+TGG + chr7_2:60923003-60923022 Msa1066790:intron 40.0%
GGTGGCAATATTTGTCTATG+TGG + chr7_2:60923021-60923040 Msa1066790:intron 40.0%
GCAACTTCGTTAAAGTTAGG+GGG - chr7_2:60923141-60923160 None:intergenic 40.0%
CGCAACTTCGTTAAAGTTAG+GGG - chr7_2:60923142-60923161 None:intergenic 40.0%
! TTTTGCACTTGTGGCAGTTT+TGG - chr7_2:60923325-60923344 None:intergenic 40.0%
TGCCACAAGTGCAAAACTTA+GGG + chr7_2:60923329-60923348 Msa1066790:intron 40.0%
! CTTTCCCAAAGTTGCGATTT+TGG - chr7_2:60923385-60923404 None:intergenic 40.0%
! ATCGCAACTTTGGGAAAGTT+AGG + chr7_2:60923387-60923406 Msa1066790:intron 40.0%
! TCGCAACTTTGGGAAAGTTA+GGG + chr7_2:60923388-60923407 Msa1066790:intron 40.0%
ATCGCGAATCGGTGAAAATA+GGG - chr7_2:60923594-60923613 None:intergenic 40.0%
AATCGCGAATCGGTGAAAAT+AGG - chr7_2:60923595-60923614 None:intergenic 40.0%
AGGCAACTAAAATCGCGAAT+CGG - chr7_2:60923605-60923624 None:intergenic 40.0%
!!! AGCGTTTTTAGTGTTCAGTC+TGG + chr7_2:60923710-60923729 Msa1066790:CDS 40.0%
!!! GTTTTTAGTGTTCAGTCTGG+TGG + chr7_2:60923713-60923732 Msa1066790:CDS 40.0%
! CAAAGAGAAGTATACGGACT+AGG + chr7_2:60923782-60923801 Msa1066790:CDS 40.0%
AACAGGCGAAGCAATTCTAT+TGG + chr7_2:60923907-60923926 Msa1066790:CDS 40.0%
ACCGTGTGAGTATCTTATCT+TGG + chr7_2:60924029-60924048 Msa1066790:intron 40.0%
! TGACAGTGTGTTTGGATTAG+CGG - chr7_2:60924213-60924232 None:intergenic 40.0%
TTACTCAGGTGTGATTGCTA+TGG + chr7_2:60924454-60924473 Msa1066790:intron 40.0%
TACTCAGGTGTGATTGCTAT+GGG + chr7_2:60924455-60924474 Msa1066790:intron 40.0%
! TGCTAGGATTTGGAGTTGTA+TGG + chr7_2:60924617-60924636 Msa1066790:CDS 40.0%
! TAGGATTTGGAGTTGTATGG+TGG + chr7_2:60924620-60924639 Msa1066790:CDS 40.0%
ACACCTATTGCTGCAAGAAT+TGG + chr7_2:60924661-60924680 Msa1066790:CDS 40.0%
CACCTATTGCTGCAAGAATT+GGG + chr7_2:60924662-60924681 Msa1066790:CDS 40.0%
GCACGCATAATAAGCAAACA+AGG - chr7_2:60924691-60924710 None:intergenic 40.0%
GCTTATTATGCGTGCCTTTA+TGG + chr7_2:60924696-60924715 Msa1066790:CDS 40.0%
!! TATATTATTCATGGCGGGCA+TGG - chr7_2:60925129-60925148 None:intergenic 40.0%
TTCTTATCCAAAACCTTGGG+TGG + chr7_2:60925249-60925268 Msa1066790:CDS 40.0%
ACTCCTCCTTTGTTCTTTCT+TGG + chr7_2:60925429-60925448 Msa1066790:intron 40.0%
TTGCCAAGAAAGAACAAAGG+AGG - chr7_2:60925435-60925454 None:intergenic 40.0%
AAAAAGCTCATCCTTGAAGG+CGG + chr7_2:60925521-60925540 Msa1066790:CDS 40.0%
GAGATTATAAGAGCCCAAAC+TGG - chr7_2:60925602-60925621 None:intergenic 40.0%
TCTCTCATTTCTGCCACAAT+TGG + chr7_2:60925618-60925637 Msa1066790:CDS 40.0%
CTCTCATTTCTGCCACAATT+GGG + chr7_2:60925619-60925638 Msa1066790:CDS 40.0%
TCTCATTTCTGCCACAATTG+GGG + chr7_2:60925620-60925639 Msa1066790:CDS 40.0%
AAGTTCAACCTCACTGAATC+TGG + chr7_2:60925779-60925798 Msa1066790:CDS 40.0%
AGTTCAACCTCACTGAATCT+GGG + chr7_2:60925780-60925799 Msa1066790:CDS 40.0%
TGTTCTTCCATGGTTAACCA+TGG + chr7_2:60925811-60925830 Msa1066790:CDS 40.0%
AATATTTGCAAACACGGCCA+TGG - chr7_2:60925831-60925850 None:intergenic 40.0%
ATGGCCGTGTTTGCAAATAT+TGG + chr7_2:60925830-60925849 Msa1066790:CDS 40.0%
CCCTCCAATATTTGCAAACA+CGG - chr7_2:60925837-60925856 None:intergenic 40.0%
CCGTGTTTGCAAATATTGGA+GGG + chr7_2:60925834-60925853 Msa1066790:CDS 40.0%
TGTTTGCAAATATTGGAGGG+TGG + chr7_2:60925837-60925856 Msa1066790:CDS 40.0%
ACCTTTGCTAACTAACGTGT+CGG - chr7_2:60925867-60925886 None:intergenic 40.0%
TGGCAGATCATGCAATCAAT+CGG + chr7_2:60926060-60926079 Msa1066790:intron 40.0%
ATGCAATCAATCGGGTTTCT+AGG + chr7_2:60926069-60926088 Msa1066790:CDS 40.0%
AGTTGCGTAAGAAAAAAGGC+AGG - chr7_2:60926096-60926115 None:intergenic 40.0%
GCTCAGTTGCGTAAGAAAAA+AGG - chr7_2:60926100-60926119 None:intergenic 40.0%
GAATTAGGTGGCTGCATATA+TGG - chr7_2:60926258-60926277 None:intergenic 40.0%
ATAAAGACCAGACTGTGAGA+AGG - chr7_2:60926317-60926336 None:intergenic 40.0%
! TGGTCCAATGTCTTGATGAT+TGG - chr7_2:60926341-60926360 None:intergenic 40.0%
TGCTCACGAGTTTCAATTTC+AGG + chr7_2:60926498-60926517 Msa1066790:CDS 40.0%
GCTCACGAGTTTCAATTTCA+GGG + chr7_2:60926499-60926518 Msa1066790:CDS 40.0%
ACATAATAGGCACACTGGTA+TGG + chr7_2:60926735-60926754 Msa1066790:CDS 40.0%
TGTGTGGCCTATATATAGCA+AGG + chr7_2:60926816-60926835 Msa1066790:three_prime_UTR 40.0%
GTGTGGCCTATATATAGCAA+GGG + chr7_2:60926817-60926836 Msa1066790:three_prime_UTR 40.0%
! GAAGTTTTCACCAAAAACCG+TGG + chr7_2:60926862-60926881 Msa1066790:three_prime_UTR 40.0%
! AAAATCAAGGCCACGGTTTT+TGG - chr7_2:60926875-60926894 None:intergenic 40.0%
TAGATGCAAACTCACTTCAG+AGG - chr7_2:60926926-60926945 None:intergenic 40.0%
TGAGAACTGAAAGGTGAGAG+TGG - chr7_2:60922596-60922615 None:intergenic 45.0%
AGCGTAGACCGAGTCAAAAT+TGG + chr7_2:60923290-60923309 Msa1066790:intron 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG + chr7_2:60923297-60923316 Msa1066790:intron 45.0%
CTGCCACAAGTGCAAAACTT+AGG + chr7_2:60923328-60923347 Msa1066790:intron 45.0%
GCCACAAGTGCAAAACTTAG+GGG + chr7_2:60923330-60923349 Msa1066790:intron 45.0%
CCACAAGTGCAAAACTTAGG+GGG + chr7_2:60923331-60923350 Msa1066790:intron 45.0%
! CGCAACTTTGGGAAAGTTAG+GGG + chr7_2:60923389-60923408 Msa1066790:intron 45.0%
! GCAACTTTGGGAAAGTTAGG+GGG + chr7_2:60923390-60923409 Msa1066790:intron 45.0%
TGCTGATGTTCAGCAAAGCA+TGG + chr7_2:60923454-60923473 Msa1066790:intron 45.0%
TCGCGAATCGGTGAAAATAG+GGG - chr7_2:60923593-60923612 None:intergenic 45.0%
CAAAAGGGTTACTCGCAATC+TGG - chr7_2:60923739-60923758 None:intergenic 45.0%
TGAAACGAAGGTAGATCCTG+TGG + chr7_2:60923871-60923890 Msa1066790:CDS 45.0%
GGCGAAGCAATTCTATTGGA+AGG + chr7_2:60923911-60923930 Msa1066790:CDS 45.0%
ATTGGAAGGAAATGGTTCGC+TGG + chr7_2:60923925-60923944 Msa1066790:CDS 45.0%
ATTACGATAAGCCAGCGCTT+AGG - chr7_2:60923974-60923993 None:intergenic 45.0%
AATCACACAGCACATGCATC+AGG - chr7_2:60924124-60924143 None:intergenic 45.0%
AACTGGAACAGTGCAACAGT+TGG + chr7_2:60924396-60924415 Msa1066790:CDS 45.0%
GGTATATGGGCAGACAAACT+TGG + chr7_2:60924583-60924602 Msa1066790:CDS 45.0%
ATATGGGCAGACAAACTTGG+TGG + chr7_2:60924586-60924605 Msa1066790:CDS 45.0%
TATGGGCAGACAAACTTGGT+GGG + chr7_2:60924587-60924606 Msa1066790:CDS 45.0%
TGGAGTTGTATGGTGGTCAA+TGG + chr7_2:60924627-60924646 Msa1066790:CDS 45.0%
AGCCCAATTCTTGCAGCAAT+AGG - chr7_2:60924667-60924686 None:intergenic 45.0%
ATGCGTGCCTTTATGGGAAT+CGG + chr7_2:60924703-60924722 Msa1066790:CDS 45.0%
!! AACCTCACCGATTCCCATAA+AGG - chr7_2:60924713-60924732 None:intergenic 45.0%
TTTATGGGAATCGGTGAGGT+TGG + chr7_2:60924712-60924731 Msa1066790:intron 45.0%
! GTCCAAGTGGATTCCAGTTT+CGG + chr7_2:60925151-60925170 Msa1066790:CDS 45.0%
GTATATAGCGGCATGTACCT+TGG + chr7_2:60925197-60925216 Msa1066790:CDS 45.0%
!! ATGTACCTTGGTTCTGTGGT+AGG + chr7_2:60925209-60925228 Msa1066790:CDS 45.0%
!! GAAGCATCTGGTTTGCCTTT+TGG + chr7_2:60925303-60925322 Msa1066790:CDS 45.0%
! CTTTTGGTGAGCTATATGCC+TGG - chr7_2:60925475-60925494 None:intergenic 45.0%
TAGCTCACCAAAAGATGACC+CGG + chr7_2:60925481-60925500 Msa1066790:CDS 45.0%
CATCTGTTTCGGACATTCCT+TGG + chr7_2:60925555-60925574 Msa1066790:CDS 45.0%
ATAAGAGCCCAGATTCAGTG+AGG - chr7_2:60925790-60925809 None:intergenic 45.0%
GGCTCTTATGTGTTCTTCCA+TGG + chr7_2:60925801-60925820 Msa1066790:CDS 45.0%
GCCGTGTTTGCAAATATTGG+AGG + chr7_2:60925833-60925852 Msa1066790:CDS 45.0%
GGCAGATCATGCAATCAATC+GGG + chr7_2:60926061-60926080 Msa1066790:intron 45.0%
TCAATTTCAGGGCGTATTGC+TGG + chr7_2:60926510-60926529 Msa1066790:CDS 45.0%
CAATTTCAGGGCGTATTGCT+GGG + chr7_2:60926511-60926530 Msa1066790:CDS 45.0%
!!! ATAATTTTTTTTTTTTTACA+GGG + chr7_2:60926283-60926302 Msa1066790:intron 5.0%
TAACACGTGGCACCTCACTT+AGG + chr7_2:60923257-60923276 Msa1066790:intron 50.0%
AACACGTGGCACCTCACTTA+GGG + chr7_2:60923258-60923277 Msa1066790:intron 50.0%
! GACCGAGTCAAAATTGGCCT+TGG + chr7_2:60923296-60923315 Msa1066790:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG - chr7_2:60923301-60923320 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG + chr7_2:60923298-60923317 Msa1066790:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG + chr7_2:60923299-60923318 Msa1066790:intron 50.0%
! CCCCCTAAGTTTTGCACTTG+TGG - chr7_2:60923334-60923353 None:intergenic 50.0%
CAAGTGCAAAACTTAGGGGG+CGG + chr7_2:60923334-60923353 Msa1066790:intron 50.0%
GGGGCCAAAATCGCAACTTT+GGG + chr7_2:60923378-60923397 Msa1066790:intron 50.0%
GATCCTGTGGCATCTGATGA+AGG + chr7_2:60923884-60923903 Msa1066790:CDS 50.0%
GTTCCTTCATCAGATGCCAC+AGG - chr7_2:60923890-60923909 None:intergenic 50.0%
GTGGCATCTGATGAAGGAAC+AGG + chr7_2:60923890-60923909 Msa1066790:CDS 50.0%
ATGGTTCGCTGGTATCTCCT+TGG + chr7_2:60923936-60923955 Msa1066790:CDS 50.0%
TTAGGAAGTTGCTGCCACCA+AGG - chr7_2:60923956-60923975 None:intergenic 50.0%
CTGGGGCTATCTACTTACTC+AGG + chr7_2:60924440-60924459 Msa1066790:CDS 50.0%
TGCCTTTATGGGAATCGGTG+AGG + chr7_2:60924708-60924727 Msa1066790:CDS 50.0%
CTCCGAAACTGGAATCCACT+TGG - chr7_2:60925156-60925175 None:intergenic 50.0%
GATCTGCTTCTCTCCGAAAC+TGG - chr7_2:60925167-60925186 None:intergenic 50.0%
AAAACACTGATGGCCACCCA+AGG - chr7_2:60925265-60925284 None:intergenic 50.0%
!! TTGGATCCCTTGGAAGCATC+TGG + chr7_2:60925291-60925310 Msa1066790:CDS 50.0%
GGCAAACCAGATGCTTCCAA+GGG - chr7_2:60925300-60925319 None:intergenic 50.0%
AGGCAAACCAGATGCTTCCA+AGG - chr7_2:60925301-60925320 None:intergenic 50.0%
GGTGAGCTATATGCCTGGAA+AGG - chr7_2:60925470-60925489 None:intergenic 50.0%
CCAAAAGATGACCCGGATCT+CGG + chr7_2:60925488-60925507 Msa1066790:CDS 50.0%
CAAAAGATGACCCGGATCTC+GGG + chr7_2:60925489-60925508 Msa1066790:CDS 50.0%
AAAAGATGACCCGGATCTCG+GGG + chr7_2:60925490-60925509 Msa1066790:CDS 50.0%
! TTTTCCTCTACCCCGAGATC+CGG - chr7_2:60925503-60925522 None:intergenic 50.0%
! TTTTCGATACGCCGCCTTCA+AGG - chr7_2:60925535-60925554 None:intergenic 50.0%
AACACGGCCATGGTTAACCA+TGG - chr7_2:60925821-60925840 None:intergenic 50.0%
GCCGACACGTTAGTTAGCAA+AGG + chr7_2:60925863-60925882 Msa1066790:CDS 50.0%
ATGCACAATACTGCCATGGC+GGG - chr7_2:60926135-60926154 None:intergenic 50.0%
CATGCACAATACTGCCATGG+CGG - chr7_2:60926136-60926155 None:intergenic 50.0%
TGCCATGCACAATACTGCCA+TGG - chr7_2:60926139-60926158 None:intergenic 50.0%
ATTGTGCATGGCATGCAGTC+AGG + chr7_2:60926146-60926165 Msa1066790:CDS 50.0%
CTGGGACTATCGAATACAGC+AGG + chr7_2:60926529-60926548 Msa1066790:CDS 50.0%
AATACAGCAGGTGTGCTTGC+TGG + chr7_2:60926541-60926560 Msa1066790:CDS 50.0%
GGGGGCCAAAATCGCAACTT+TGG + chr7_2:60923377-60923396 Msa1066790:intron 55.0%
GTTCGCTGGTATCTCCTTGG+TGG + chr7_2:60923939-60923958 Msa1066790:CDS 55.0%
! GGCAGACAAACTTGGTGGGA+AGG + chr7_2:60924591-60924610 Msa1066790:CDS 55.0%
GGGAAGGTCGTGCTAGGATT+TGG + chr7_2:60924607-60924626 Msa1066790:CDS 55.0%
!! CGGCATGTACCTTGGTTCTG+TGG + chr7_2:60925205-60925224 Msa1066790:CDS 55.0%
CCAAGCCTACCACAGAACCA+AGG - chr7_2:60925217-60925236 None:intergenic 55.0%
!! CCTTGGTTCTGTGGTAGGCT+TGG + chr7_2:60925214-60925233 Msa1066790:CDS 55.0%
! CTGATGGCCACCCAAGGTTT+TGG - chr7_2:60925259-60925278 None:intergenic 55.0%
! CCGAGATCCGGGTCATCTTT+TGG - chr7_2:60925491-60925510 None:intergenic 55.0%
TTTCCTCTACCCCGAGATCC+GGG - chr7_2:60925502-60925521 None:intergenic 55.0%
!!! CCATGGCGGGTGTTTTGACA+TGG - chr7_2:60926122-60926141 None:intergenic 55.0%
CCATGTCAAAACACCCGCCA+TGG + chr7_2:60926119-60926138 Msa1066790:CDS 55.0%
CGCCATGGCAGTATTGTGCA+TGG + chr7_2:60926134-60926153 Msa1066790:CDS 55.0%
TCGGATGCCTTCTCACAGTC+TGG + chr7_2:60926307-60926326 Msa1066790:CDS 55.0%
GTCTTTGGCACAGCTGCAAC+TGG + chr7_2:60926565-60926584 Msa1066790:CDS 55.0%
!! GTAGCAGTTTTGGCCCCCCA+AGG + chr7_2:60923214-60923233 Msa1066790:intron 60.0%
CTGACGTGGCACCCTAAGTG+AGG - chr7_2:60923272-60923291 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG - chr7_2:60923286-60923305 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG - chr7_2:60923316-60923335 None:intergenic 60.0%
GGCAGCAACTTCCTAAGCGC+TGG + chr7_2:60923960-60923979 Msa1066790:CDS 60.0%
CTTGGTGGGAAGGTCGTGCT+AGG + chr7_2:60924601-60924620 Msa1066790:CDS 60.0%
! GGTGTGCTTGCTGGCGTCTT+TGG + chr7_2:60926550-60926569 Msa1066790:CDS 60.0%
TGACCCGGATCTCGGGGTAG+AGG + chr7_2:60925496-60925515 Msa1066790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 60922425 60927179 60922425 ID=Msa1066790;Name=Msa1066790
chr7_2 mRNA 60922425 60927179 60922425 ID=Msa1066790-mRNA-1;Parent=Msa1066790;Name=Msa1066790-mRNA-1;_AED=0.10;_eAED=0.11;_QI=214|0.8|0.81|1|1|1|11|386|526
chr7_2 exon 60922425 60922693 60922425 ID=Msa1066790-mRNA-1:exon:12108;Parent=Msa1066790-mRNA-1
chr7_2 exon 60923666 60923988 60923666 ID=Msa1066790-mRNA-1:exon:12109;Parent=Msa1066790-mRNA-1
chr7_2 exon 60924354 60924461 60924354 ID=Msa1066790-mRNA-1:exon:12110;Parent=Msa1066790-mRNA-1
chr7_2 exon 60924574 60924729 60924574 ID=Msa1066790-mRNA-1:exon:12111;Parent=Msa1066790-mRNA-1
chr7_2 exon 60925119 60925334 60925119 ID=Msa1066790-mRNA-1:exon:12112;Parent=Msa1066790-mRNA-1
chr7_2 exon 60925476 60925685 60925476 ID=Msa1066790-mRNA-1:exon:12113;Parent=Msa1066790-mRNA-1
chr7_2 exon 60925773 60925910 60925773 ID=Msa1066790-mRNA-1:exon:12114;Parent=Msa1066790-mRNA-1
chr7_2 exon 60926066 60926167 60926066 ID=Msa1066790-mRNA-1:exon:12115;Parent=Msa1066790-mRNA-1
chr7_2 exon 60926304 60926369 60926304 ID=Msa1066790-mRNA-1:exon:12116;Parent=Msa1066790-mRNA-1
chr7_2 exon 60926496 60926604 60926496 ID=Msa1066790-mRNA-1:exon:12117;Parent=Msa1066790-mRNA-1
chr7_2 exon 60926696 60927179 60926696 ID=Msa1066790-mRNA-1:exon:12118;Parent=Msa1066790-mRNA-1
chr7_2 five_prime_UTR 60922425 60922638 60922425 ID=Msa1066790-mRNA-1:five_prime_utr;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60922639 60922693 60922639 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60923666 60923988 60923666 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60924354 60924461 60924354 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60924574 60924729 60924574 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60925119 60925334 60925119 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60925476 60925685 60925476 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60925773 60925910 60925773 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60926066 60926167 60926066 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60926304 60926369 60926304 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60926496 60926604 60926496 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 CDS 60926696 60926793 60926696 ID=Msa1066790-mRNA-1:cds;Parent=Msa1066790-mRNA-1
chr7_2 three_prime_UTR 60926794 60927179 60926794 ID=Msa1066790-mRNA-1:three_prime_utr;Parent=Msa1066790-mRNA-1
Gene Sequence

>Msa1066790

ATGGCTATAAGTGGTTTAATTTCCAACAGAAGCTTCACTTCTTTCATTGCTTCAGGAAATGTATATCAGTTAAGAAAGGATCTATCACTTCAAAGAGGAAGCGTTTTTAGTGTTCAGTCTGGTGGCCAGATTGCGAGTAACCCTTTTGCAAAAAGTAGAAGTCATATTGAACAAAGAGAAGTATACGGACTAGGAGTAAGAAAGCTCAGTAAGATAAATAAAGTCTGTGTTCATTACAGTTCAGAAGAATATGACATTGATGAAACGAAGGTAGATCCTGTGGCATCTGATGAAGGAACAGGCGAAGCAATTCTATTGGAAGGAAATGGTTCGCTGGTATCTCCTTGGTGGCAGCAACTTCCTAAGCGCTGGCTTATCGTAAATATGAGCATTGCGATACTTCCAATGTCACAAGAGTTTAACTGGAACAGTGCAACAGTTGGCCTAATTCAGTCATCTTTTTTCTGGGGCTATCTACTTACTCAGATTCTTGGTGGTATATGGGCAGACAAACTTGGTGGGAAGGTCGTGCTAGGATTTGGAGTTGTATGGTGGTCAATGGCAACAATTCTAACACCTATTGCTGCAAGAATTGGGCTACCTTGTTTGCTTATTATGCGTGCCTTTATGGGAATCGGTGAGGGTGTAGCCATGCCCGCCATGAATAATATACTGTCCAAGTGGATTCCAGTTTCGGAGAGAAGCAGATCACTTTCGCTAGTATATAGCGGCATGTACCTTGGTTCTGTGGTAGGCTTGGCATTCTCACCTTTTCTTATCCAAAACCTTGGGTGGCCATCAGTGTTTTACTCATTTGGATCCCTTGGAAGCATCTGGTTTGCCTTTTGGTTGAGAAAAGCATATAGCTCACCAAAAGATGACCCGGATCTCGGGGTAGAGGAAAAAAAGCTCATCCTTGAAGGCGGCGTATCGAAAACATCTGTTTCGGACATTCCTTGGAAATTAATTCTATCAAAAGCACCAGTTTGGGCTCTTATAATCTCTCATTTCTGCCACAATTGGGGAACATTTATTCTATTAACATGGATGCCTACTTACTATAATCAGGTTCTGAAGTTCAACCTCACTGAATCTGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCCGTGTTTGCAAATATTGGAGGGTGGATAGCCGACACGTTAGTTAGCAAAGGTGTTTCCATAACAACTGTTCGAAAGATCATGCAATCAATCGGGTTTCTAGGTCCTGCCTTTTTTCTTACGCAACTGAGCCATGTCAAAACACCCGCCATGGCAGTATTGTGCATGGCATGCAGTCAGGGATCGGATGCCTTCTCACAGTCTGGTCTTTATTCCAATCATCAAGACATTGGACCACGTTATGCTAATGCTCACGAGTTTCAATTTCAGGGCGTATTGCTGGGACTATCGAATACAGCAGGTGTGCTTGCTGGCGTCTTTGGCACAGCTGCAACTGGATACATACTTCAAAGAGGTTCTTGGAATGACGTGTTTAAGGTTTCTGTTGCATTATACATAATAGGCACACTGGTATGGAATATATTTTCTACTGGGGAGAAGATTCTTGACTGA

Protein sequence

>Msa1066790

MAISGLISNRSFTSFIASGNVYQLRKDLSLQRGSVFSVQSGGQIASNPFAKSRSHIEQREVYGLGVRKLSKINKVCVHYSSEEYDIDETKVDPVASDEGTGEAILLEGNGSLVSPWWQQLPKRWLIVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKVVLGFGVVWWSMATILTPIAARIGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLSLVYSGMYLGSVVGLAFSPFLIQNLGWPSVFYSFGSLGSIWFAFWLRKAYSSPKDDPDLGVEEKKLILEGGVSKTSVSDIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSKGVSITTVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYANAHEFQFQGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVALYIIGTLVWNIFSTGEKILD*