AlfalfaGEDB | Msa0170730

M. sativa cultivar zhongmu-4 / Msa0170730

KEGG: -
GO: -
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170730	XP_013468801.1	96.701	394	8	2	1	393	1	390	0.0	769

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170730	sp\|Q9FFZ1\|PPH_ARATH	27.035	344	181	15	94	393	97	414	1.87e-20	96.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170730	A0A072VN42	96.701	394	8	2	1	393	1	390	0.0	769

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0170730	0.826411	2.753557e-54	-8.615850e-47
Msa0000220	Msa0170730	0.864045	1.612140e-64	-8.615850e-47
Msa0000610	Msa0170730	0.844377	7.850243e-59	-8.615850e-47
Msa0001040	Msa0170730	0.874430	6.795656e-68	-8.615850e-47
Msa0001510	Msa0170730	0.874497	6.449754e-68	-8.615850e-47
Msa0002110	Msa0170730	0.853897	1.763377e-61	-8.615850e-47
Msa0002690	Msa0170730	0.889552	2.186348e-73	-8.615850e-47
Msa0002700	Msa0170730	0.882433	1.046417e-70	-8.615850e-47
Msa0003340	Msa0170730	0.885023	1.162369e-71	-8.615850e-47
Msa0003370	Msa0170730	0.801713	7.909421e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170730	MtrunA17_Chr1g0188361	96.701	394	8	2	1	393	1	390	0.0	769
Msa0170730	MtrunA17_Chr5g0423381	34.967	306	168	9	84	383	50	330	9.47e-53	179
Msa0170730	MtrunA17_Chr8g0372991	35.694	353	185	12	58	393	38	365	1.03e-51	177
Msa0170730	MtrunA17_Chr4g0018641	31.190	311	172	12	87	390	398	673	3.39e-25	107
Msa0170730	MtrunA17_Chr3g0090521	24.507	355	200	13	82	393	121	450	6.71e-22	97.4
Msa0170730	MtrunA17_Chr4g0003831	25.256	293	175	10	122	393	373	642	5.97e-16	79.7
Msa0170730	MtrunA17_Chr2g0332311	24.573	293	179	9	121	393	376	646	1.10e-12	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170730	AT5G38520.1	68.263	334	96	3	62	393	34	359	1.93e-159	452
Msa0170730	AT5G38520.2	67.059	340	102	3	62	393	34	371	6.52e-159	452
Msa0170730	AT5G19850.1	33.631	336	184	10	59	383	42	349	3.47e-54	183
Msa0170730	AT4G36530.2	32.011	378	199	17	30	391	28	363	2.38e-46	163
Msa0170730	AT4G36530.1	33.236	343	177	14	64	391	1	306	2.56e-46	161
Msa0170730	AT5G13800.2	27.035	344	181	15	94	393	97	414	1.90e-21	96.3
Msa0170730	AT5G13800.1	27.035	344	181	15	94	393	97	414	1.90e-21	96.3
Msa0170730	AT5G13800.3	27.035	344	181	15	94	393	120	437	2.73e-21	95.9
Msa0170730	AT5G13800.4	26.667	375	195	16	51	381	64	402	3.19e-20	92.0
Msa0170730	AT4G25290.1	28.182	330	177	12	79	393	386	670	4.62e-20	92.8

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Find 104 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATCAGCCAAAGCA+AGG	0.543664	1_4:+55060220	None:intergenic
AAATCAATCAGCCAAAGCAA+GGG	0.595342	1_4:+55060221	None:intergenic
AACATCTTGAGTTCAGTGTA+TGG	0.513396	1_4:-55060055	Msa0170730:CDS
AAGAGTGTTCTTTGGTGTAG+TGG	0.482090	1_4:+55061833	None:intergenic
AAGCCATGGACAAGTAACAG+AGG	0.730393	1_4:+55061570	None:intergenic
AAGGCTCCTTCAGCATTCGC+CGG	0.569196	1_4:+55059804	None:intergenic
AAGGTTACGTTCAGAGTTCT+TGG	0.313499	1_4:-55059351	Msa0170730:three_prime_UTR
AAGTAACAGAGGAGGGTTAT+TGG	0.354968	1_4:+55061581	None:intergenic
AATTCAGGCCTGTCATCATG+GGG	0.687756	1_4:+55059576	None:intergenic
AATTGATACAAATGCATCTA+AGG	0.330008	1_4:+55059785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGATCCTGAAGTTTCTA+TGG	+	chr1_4:55059481-55059500	None:intergenic	30.0%
TAAAGCAGAAATGTCTTAAG+TGG	-	chr1_4:55059517-55059536	Msa0170730:exon	30.0%
GTTTATGCTATTGATCTTCT+TGG	-	chr1_4:55060329-55060348	Msa0170730:CDS	30.0%
CTTGATATTTAGGCAAAATG+TGG	+	chr1_4:55060544-55060563	None:intergenic	30.0%
TGATGCAAACCTTGATATTT+AGG	+	chr1_4:55060554-55060573	None:intergenic	30.0%
TCAATACAAACAGTTGATCT+TGG	-	chr1_4:55060657-55060676	Msa0170730:intron	30.0%
TTAAATGCAGAGAGAATTTG+AGG	-	chr1_4:55061110-55061129	Msa0170730:intron	30.0%
TACAAAACCAACGGTTAAAA+AGG	+	chr1_4:55061234-55061253	None:intergenic	30.0%
GCATTTGTATCAATTGTAAC+AGG	-	chr1_4:55061411-55061430	Msa0170730:intron	30.0%
TCTCCCCATAAAAGTAAAAT+AGG	+	chr1_4:55061483-55061502	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	55059254	55061956	55059254	ID=Msa0170730;Name=Msa0170730
chr1_4	mRNA	55059254	55061956	55059254	ID=Msa0170730-mRNA-1;Parent=Msa0170730;Name=Msa0170730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=7\|1\|1\|1\|1\|1\|6\|282\|393
chr1_4	exon	55059254	55059838	55059254	ID=Msa0170730-mRNA-1:exon:16448;Parent=Msa0170730-mRNA-1
chr1_4	exon	55060021	55060090	55060021	ID=Msa0170730-mRNA-1:exon:16447;Parent=Msa0170730-mRNA-1
chr1_4	exon	55060167	55060355	55060167	ID=Msa0170730-mRNA-1:exon:16446;Parent=Msa0170730-mRNA-1
chr1_4	exon	55060440	55060540	55060440	ID=Msa0170730-mRNA-1:exon:16445;Parent=Msa0170730-mRNA-1
chr1_4	exon	55060801	55060912	55060801	ID=Msa0170730-mRNA-1:exon:16444;Parent=Msa0170730-mRNA-1
chr1_4	exon	55061543	55061956	55061543	ID=Msa0170730-mRNA-1:exon:16443;Parent=Msa0170730-mRNA-1
chr1_4	five_prime_UTR	55061950	55061956	55061950	ID=Msa0170730-mRNA-1:five_prime_utr;Parent=Msa0170730-mRNA-1
chr1_4	CDS	55061543	55061949	55061543	ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4	CDS	55060801	55060912	55060801	ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4	CDS	55060440	55060540	55060440	ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4	CDS	55060167	55060355	55060167	ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4	CDS	55060021	55060090	55060021	ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4	CDS	55059536	55059838	55059536	ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4	three_prime_UTR	55059254	55059535	55059254	ID=Msa0170730-mRNA-1:three_prime_utr;Parent=Msa0170730-mRNA-1

Gene Sequence

>Msa0170730

ATGGAAGTGACAAGTGCTGTTCATTCAGTTGGGTTTCTCAAACAACTTGAAAGGTTCAACAGCATCAATGGATCCTTGTTCCTATCCACAAAAACCACTACACCAAAGAACACTCTTCTTCATTGTTATCTTCATCCAAACCACTTAAGCATCCAAAACAATGGTGGTAGAAACAGTAAAAGTGTGATCATCAACTCAACTTCTTCTTCTGCTGCTTCCATAGAAACTTCAGGATCATTATCTGAAGTTGAAAAGATAAAGCAGAAATGTCTTAAGTGGAAGTGGAAAGGTGAATATTCCATAAATTATTTTGTTTCTTTAGACTCATCTTCAGATTCTGCAAAGTCCAATAACCCTCCTCTGTTACTTGTCCATGGCTTTGGTGCTTCCATTCCTCACTGGCGTAGGAATATCAAGACACTGTCTGAGAATTATACGGTTTATGCTATTGATCTTCTTGGTTTTGGAGCATCAGATAAGCCACCAGGCTTTTCGTATACCATGGAAACATGGGCTGAGTTGATCTTGGATTTCTTGGATGAAGTTGTTCAGAAGCCAACAGTACTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCTGCTTCAGGCATTATTCGACCAGATTCAAGTGAAACTCTAGTTAGAGGAATTGTGCTATTAAATTGTTCTGGTGGCATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGAGAGAATTTGAGGAACATCTTGAGTTCAGTGTATGGAAATAAGGAGGCTGTGGATGATGAACTCGTGGAGATCATTAGGGAACCGGCGAATGCTGAAGGAGCCTTAGATGCATTTGTATCAATTGTAACAGGGCCGCCGGGGCCTAATCCGGTGCAACTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>Msa0170730

MEVTSAVHSVGFLKQLERFNSINGSLFLSTKTTTPKNTLLHCYLHPNHLSIQNNGGRNSKSVIINSTSSSAASIETSGSLSEVEKIKQKCLKWKWKGEYSINYFVSLDSSSDSAKSNNPPLLLVHGFGASIPHWRRNIKTLSENYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLDEVVQKPTVLIGNSVGSLACLIAAASGIIRPDSSETLVRGIVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRENLRNILSSVYGNKEAVDDELVEIIREPANAEGALDAFVSIVTGPPGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEGVGHCPHDDRPELVHEKLLPWLATL*