AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170730 MtrunA17_Chr1g0188361 96.701 394 8 2 1 393 1 390 0.0 769
Msa0170730 MtrunA17_Chr5g0423381 34.967 306 168 9 84 383 50 330 9.47e-53 179
Msa0170730 MtrunA17_Chr8g0372991 35.694 353 185 12 58 393 38 365 1.03e-51 177
Msa0170730 MtrunA17_Chr4g0018641 31.190 311 172 12 87 390 398 673 3.39e-25 107
Msa0170730 MtrunA17_Chr3g0090521 24.507 355 200 13 82 393 121 450 6.71e-22 97.4
Msa0170730 MtrunA17_Chr4g0003831 25.256 293 175 10 122 393 373 642 5.97e-16 79.7
Msa0170730 MtrunA17_Chr2g0332311 24.573 293 179 9 121 393 376 646 1.10e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170730 AT5G38520.1 68.263 334 96 3 62 393 34 359 1.93e-159 452
Msa0170730 AT5G38520.2 67.059 340 102 3 62 393 34 371 6.52e-159 452
Msa0170730 AT5G19850.1 33.631 336 184 10 59 383 42 349 3.47e-54 183
Msa0170730 AT4G36530.2 32.011 378 199 17 30 391 28 363 2.38e-46 163
Msa0170730 AT4G36530.1 33.236 343 177 14 64 391 1 306 2.56e-46 161
Msa0170730 AT5G13800.2 27.035 344 181 15 94 393 97 414 1.90e-21 96.3
Msa0170730 AT5G13800.1 27.035 344 181 15 94 393 97 414 1.90e-21 96.3
Msa0170730 AT5G13800.3 27.035 344 181 15 94 393 120 437 2.73e-21 95.9
Msa0170730 AT5G13800.4 26.667 375 195 16 51 381 64 402 3.19e-20 92.0
Msa0170730 AT4G25290.1 28.182 330 177 12 79 393 386 670 4.62e-20 92.8
Msa0170730 AT4G12830.1 36.441 118 65 3 110 224 125 235 4.43e-14 73.6
Msa0170730 AT1G80280.1 24.742 291 179 10 121 393 374 642 7.53e-14 73.6

Find 104 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTGATACAACGTATT+TGG 0.096787 1_4:+55059281 None:intergenic
TTCTTTCACATTTAATTTAT+AGG 0.155430 1_4:+55059259 None:intergenic
GCTATTGATCTTCTTGGTTT+TGG 0.163333 1_4:-55060853 Msa0170730:CDS
TAAAGAAACAAAATAATTTA+TGG 0.207219 1_4:+55061629 None:intergenic
GTTTATGCTATTGATCTTCT+TGG 0.221335 1_4:-55060859 Msa0170730:CDS
ACAGTTGATCTTGGATTTCT+TGG 0.227874 1_4:-55060522 Msa0170730:intron
CACCAATTACAAACTATAAA+AGG 0.236377 1_4:+55059479 None:intergenic
TGTTTCTACCACCATTGTTT+TGG 0.239122 1_4:+55061775 None:intergenic
TGTCTCATTGCTGCTGCTTC+AGG 0.241897 1_4:-55060443 Msa0170730:CDS
TCTCCCCATAAAAGTAAAAT+AGG 0.274171 1_4:+55059708 None:intergenic
GCATTTGTATCAATTGTAAC+AGG 0.286676 1_4:-55059777 Msa0170730:CDS
CTGTTACTTGTCCATGGCTT+TGG 0.291905 1_4:-55061567 Msa0170730:CDS
CTTCTTGATACAACGTATTT+GGG 0.312055 1_4:+55059282 None:intergenic
AAGGTTACGTTCAGAGTTCT+TGG 0.313499 1_4:-55059351 Msa0170730:three_prime_UTR
AATTGATACAAATGCATCTA+AGG 0.330008 1_4:+55059785 None:intergenic
TTGCAGAAGCAATTCCCTTT+TGG 0.333173 1_4:+55060189 None:intergenic
GAGTTCAGTGTATGGAAATA+AGG 0.338288 1_4:-55060047 Msa0170730:CDS
ATTTACACCACCATGTCTAT+TGG 0.339060 1_4:-55059382 Msa0170730:three_prime_UTR
ACAAAGCAATTGTTGATGAT+TGG 0.341853 1_4:-55060262 Msa0170730:CDS
TCAATACAAACAGTTGATCT+TGG 0.347401 1_4:-55060531 Msa0170730:intron
AGTTACTCCTTCCCTTGCTT+TGG 0.349148 1_4:-55060232 Msa0170730:CDS
AAGTAACAGAGGAGGGTTAT+TGG 0.354968 1_4:+55061581 None:intergenic
GATCCCTTTACTCCAATTGA+TGG 0.363586 1_4:-55059681 Msa0170730:CDS
TCAAGTGAAACTCTAGTTAG+AGG 0.364835 1_4:-55060320 Msa0170730:CDS
TAATGATCCTGAAGTTTCTA+TGG 0.365035 1_4:+55061710 None:intergenic
CAGAAGCCAACAGTACTAAT+AGG 0.371016 1_4:-55060488 Msa0170730:CDS
GACACTGTCTGAGAATTATA+CGG 0.378882 1_4:-55060881 Msa0170730:CDS
GGCACCAGTTGCACCGGATT+AGG 0.382985 1_4:+55059744 None:intergenic
ACTAGAGTTTCACTTGAATC+TGG 0.383055 1_4:+55060326 None:intergenic
TTTGGTTCCTCAGATCATTA+GGG 0.394374 1_4:-55059829 Msa0170730:intron
GGCAACTCTTTAAAATTCAT+AGG 0.394815 1_4:-55059526 Msa0170730:exon
ATTGTGCTATTAAATTGTTC+TGG 0.404463 1_4:-55060296 Msa0170730:CDS
GCTGCTTCCATAGAAACTTC+AGG 0.412435 1_4:-55061717 Msa0170730:CDS
GGTCCATCAATTGGAGTAAA+GGG 0.415428 1_4:+55059678 None:intergenic
GTTCAACTGTTCATGCTTGA+AGG 0.416044 1_4:-55059612 Msa0170730:CDS
CAATGAAGAAGAGTGTTCTT+TGG 0.417111 1_4:+55061825 None:intergenic
ACAAGTGCTGTTCATTCAGT+TGG 0.421358 1_4:-55061918 Msa0170730:CDS
CAAGTGCTGTTCATTCAGTT+GGG 0.427250 1_4:-55061917 Msa0170730:CDS
AGGGCCGCCGGGGCCTAATC+CGG 0.428980 1_4:-55059757 Msa0170730:CDS
TCCTCAGATCATTAGGGAAC+CGG 0.429301 1_4:-55059823 Msa0170730:intron
TTTCCAACAGGTCCATCAAT+TGG 0.431388 1_4:+55059669 None:intergenic
GGGGCCTAATCCGGTGCAAC+TGG 0.436807 1_4:-55059748 Msa0170730:CDS
TTAAATGCAGAGAGAATTTG+AGG 0.438567 1_4:-55060078 Msa0170730:intron
GAAAGGTTCAACAGCATCAA+TGG 0.438799 1_4:-55061879 Msa0170730:CDS
GAAGAAAAGTACTTTCCAAC+AGG 0.449114 1_4:+55059657 None:intergenic
ACAGACATCGTAGAAAGAAA+TGG 0.455043 1_4:-55061946 None:intergenic
TTGGTGCTTCCATTCCTCAC+TGG 0.462114 1_4:-55061548 Msa0170730:CDS
TAAAGCAGAAATGTCTTAAG+TGG 0.464903 1_4:-55061671 Msa0170730:CDS
CCTCCTCTGTTACTTGTCCA+TGG 0.474310 1_4:-55061573 Msa0170730:CDS
AGGTTACGTTCAGAGTTCTT+GGG 0.478184 1_4:-55059350 Msa0170730:three_prime_UTR
AAGAGTGTTCTTTGGTGTAG+TGG 0.482090 1_4:+55061833 None:intergenic
AGGTCCATCAATTGGAGTAA+AGG 0.483632 1_4:+55059677 None:intergenic
GACATTGTCCCCATGATGAC+AGG 0.489475 1_4:-55059584 Msa0170730:CDS
TCAATTGTAACAGGGCCGCC+GGG 0.490938 1_4:-55059768 Msa0170730:CDS
ACTCCAATTGATGGACCTGT+TGG 0.491390 1_4:-55059672 Msa0170730:CDS
TTCAACTGTTCATGCTTGAA+GGG 0.491418 1_4:-55059611 Msa0170730:CDS
GAGTTTCCTATTAGTACTGT+TGG 0.496781 1_4:+55060482 None:intergenic
ATCAATTGTAACAGGGCCGC+CGG 0.498322 1_4:-55059769 Msa0170730:CDS
GTACTAATAGGAAACTCTGT+TGG 0.499809 1_4:-55060476 Msa0170730:CDS
CTAATTCAGGCCTGTCATCA+TGG 0.500280 1_4:+55059574 None:intergenic
TTTCGTATACCATGGAAACA+TGG 0.503219 1_4:-55060807 Msa0170730:CDS
CTGTTCATGCTTGAAGGGGT+TGG 0.503540 1_4:-55059606 Msa0170730:CDS
ATGTCTATTGGAAGGAAGAA+AGG 0.507439 1_4:-55059370 Msa0170730:three_prime_UTR
AACATCTTGAGTTCAGTGTA+TGG 0.513396 1_4:-55060055 Msa0170730:CDS
TAATTCAGGCCTGTCATCAT+GGG 0.516079 1_4:+55059575 None:intergenic
GGTTTCTCAAACAACTTGAA+AGG 0.517413 1_4:-55061896 Msa0170730:CDS
AGAAATGTCTTAAGTGGAAG+TGG 0.522801 1_4:-55061665 Msa0170730:CDS
AAAATCAATCAGCCAAAGCA+AGG 0.543664 1_4:+55060220 None:intergenic
GGAGCATCAGATAAGCCACC+AGG 0.544264 1_4:-55060832 Msa0170730:CDS
TACCTCAGCCCATGTTTCCA+TGG 0.544343 1_4:+55060798 None:intergenic
CTTCCATTCCTCACTGGCGT+AGG 0.567976 1_4:-55061542 Msa0170730:intron
AAGGCTCCTTCAGCATTCGC+CGG 0.569196 1_4:+55059804 None:intergenic
CTTCCTTCCAATAGACATGG+TGG 0.571251 1_4:+55059375 None:intergenic
GAATGGAAGCACCAAAGCCA+TGG 0.571641 1_4:+55061556 None:intergenic
AGGGAACCGGCGAATGCTGA+AGG 0.582575 1_4:-55059810 Msa0170730:CDS
TCAGAGTTCTTGGGAAAACA+TGG 0.583064 1_4:-55059341 Msa0170730:three_prime_UTR
TACCATGGAAACATGGGCTG+AGG 0.583191 1_4:-55060800 Msa0170730:intron
GTATGGAAATAAGGAGGCTG+TGG 0.584738 1_4:-55060038 Msa0170730:CDS
ATACCTACGCCAGTGAGGAA+TGG 0.584882 1_4:+55061539 None:intergenic
ACACCACCATGTCTATTGGA+AGG 0.595153 1_4:-55059378 Msa0170730:three_prime_UTR
AAATCAATCAGCCAAAGCAA+GGG 0.595342 1_4:+55060221 None:intergenic
TGTCTTAAGTGGAAGTGGAA+AGG 0.597275 1_4:-55061660 Msa0170730:CDS
TTCGTATACCATGGAAACAT+GGG 0.598366 1_4:-55060806 Msa0170730:CDS
ATCAACATAATCTATACATG+TGG 0.601133 1_4:+55059423 None:intergenic
GTGCTATTAAATTGTTCTGG+TGG 0.607382 1_4:-55060293 Msa0170730:CDS
AGTTGCACCGGATTAGGCCC+CGG 0.614113 1_4:+55059750 None:intergenic
TTTCTTCCTTCCAATAGACA+TGG 0.618190 1_4:+55059372 None:intergenic
CAATCAGCCAAAGCAAGGGA+AGG 0.620564 1_4:+55060225 None:intergenic
CATTTGTATCAATTGTAACA+GGG 0.626940 1_4:-55059776 Msa0170730:CDS
GGCTGTGGATGATGAACTCG+TGG 0.631002 1_4:-55060023 Msa0170730:CDS
CATGGACAAGTAACAGAGGA+GGG 0.632484 1_4:+55061574 None:intergenic
CACTTAAGCATCCAAAACAA+TGG 0.634989 1_4:-55061786 Msa0170730:CDS
TCCATGGTATACGAAAAGCC+TGG 0.647873 1_4:+55060814 None:intergenic
TTCAGTGTATGGAAATAAGG+AGG 0.648155 1_4:-55060044 Msa0170730:CDS
CCATGGACAAGTAACAGAGG+AGG 0.649384 1_4:+55061573 None:intergenic
CAATTGTAACAGGGCCGCCG+GGG 0.653302 1_4:-55059767 Msa0170730:CDS
TCAACTGTTCATGCTTGAAG+GGG 0.658262 1_4:-55059610 Msa0170730:CDS
TTAAGCATCCAAAACAATGG+TGG 0.671828 1_4:-55061783 Msa0170730:CDS
AATTCAGGCCTGTCATCATG+GGG 0.687756 1_4:+55059576 None:intergenic
ATGGTATACGAAAAGCCTGG+TGG 0.725251 1_4:+55060817 None:intergenic
AAGCCATGGACAAGTAACAG+AGG 0.730393 1_4:+55061570 None:intergenic
CAAACATACCTACGCCAGTG+AGG 0.731840 1_4:+55061534 None:intergenic
TGTGGATGATGAACTCGTGG+AGG 0.755163 1_4:-55060020 Msa0170730:intron
TGCACCGGATTAGGCCCCGG+CGG 0.755765 1_4:+55059753 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAACAAAATAATTTA+TGG + chr1_4:55059562-55059581 None:intergenic 10.0%
!!! CATAACAAATTTAACTTATA+CGG - chr1_4:55060626-55060645 Msa0170730:intron 15.0%
!!! ACTTATAAGAATTCATATTT+TGG - chr1_4:55061341-55061360 Msa0170730:intron 15.0%
!!! TTCTTTCACATTTAATTTAT+AGG + chr1_4:55061932-55061951 None:intergenic 15.0%
!!! ATACATTATTTCTGAATACA+TGG + chr1_4:55059864-55059883 None:intergenic 20.0%
!!! ATAAAATTGTGACATTTTAG+AGG + chr1_4:55060201-55060220 None:intergenic 20.0%
!!! TCAACTATTTTTCTCAAAAT+TGG - chr1_4:55060245-55060264 Msa0170730:CDS 20.0%
!!! CAACTATTTTTCTCAAAATT+GGG - chr1_4:55060246-55060265 Msa0170730:CDS 20.0%
!!! TCTCTAAAATAGTTATATTG+CGG + chr1_4:55060489-55060508 None:intergenic 20.0%
!!! TGATTTTTTATTGAACCAAA+AGG - chr1_4:55060984-55061003 Msa0170730:intron 20.0%
!!! GATTTTTTATTGAACCAAAA+GGG - chr1_4:55060985-55061004 Msa0170730:intron 20.0%
!! CAAAAAATTTAGGGAAATTA+TGG + chr1_4:55061066-55061085 None:intergenic 20.0%
!!! ATTTCCCTAAATTTTTTGAT+AGG - chr1_4:55061068-55061087 Msa0170730:intron 20.0%
!! GTTTCCTATCAAAAAATTTA+GGG + chr1_4:55061075-55061094 None:intergenic 20.0%
!! TGTTTCCTATCAAAAAATTT+AGG + chr1_4:55061076-55061095 None:intergenic 20.0%
!! AAAAAAATTAATACTCCTTC+CGG + chr1_4:55061304-55061323 None:intergenic 20.0%
!!! AAAATAGGCAATGATATTTT+TGG + chr1_4:55061468-55061487 None:intergenic 20.0%
!!! ATTGCCTATTTTACTTTTAT+GGG - chr1_4:55061476-55061495 Msa0170730:intron 20.0%
!!! AACCTTTTATAGTTTGTAAT+TGG - chr1_4:55061707-55061726 Msa0170730:CDS 20.0%
! AAAATATGAGTTATTGACAG+TGG + chr1_4:55059680-55059699 None:intergenic 25.0%
!! CTTTTAGCAAAAAAAATGAG+TGG + chr1_4:55059719-55059738 None:intergenic 25.0%
! AGAATATAAAGTGACAAACA+AGG + chr1_4:55059752-55059771 None:intergenic 25.0%
! AATTGTAAAAGAAACTGATG+AGG - chr1_4:55059953-55059972 Msa0170730:intron 25.0%
! TAGATCCAATATTATCAACA+AGG - chr1_4:55060059-55060078 Msa0170730:CDS 25.0%
!! ACTCTATTTCTCAATCATAA+AGG + chr1_4:55060105-55060124 None:intergenic 25.0%
! TTTAATGATGTCGAACTAAA+AGG + chr1_4:55060428-55060447 None:intergenic 25.0%
!! ATTGTGCTATTAAATTGTTC+TGG - chr1_4:55060892-55060911 Msa0170730:CDS 25.0%
! AAAGGTAATCTCTTTAGATT+AGG - chr1_4:55061040-55061059 Msa0170730:intron 25.0%
! ATTATTGTCTACAAAACCAA+CGG + chr1_4:55061243-55061262 None:intergenic 25.0%
! AATTGATACAAATGCATCTA+AGG + chr1_4:55061406-55061425 None:intergenic 25.0%
! CATTTGTATCAATTGTAACA+GGG - chr1_4:55061412-55061431 Msa0170730:intron 25.0%
!!! CATTGCCTATTTTACTTTTA+TGG - chr1_4:55061475-55061494 Msa0170730:intron 25.0%
!!! TTGCCTATTTTACTTTTATG+GGG - chr1_4:55061477-55061496 Msa0170730:intron 25.0%
!!! AATTTTTCATGGACTAATTC+AGG + chr1_4:55061630-55061649 None:intergenic 25.0%
! CACCAATTACAAACTATAAA+AGG + chr1_4:55061712-55061731 None:intergenic 25.0%
! ATCAACATAATCTATACATG+TGG + chr1_4:55061768-55061787 None:intergenic 25.0%
TAATGATCCTGAAGTTTCTA+TGG + chr1_4:55059481-55059500 None:intergenic 30.0%
TAAAGCAGAAATGTCTTAAG+TGG - chr1_4:55059517-55059536 Msa0170730:exon 30.0%
!! AACAGCCTTGTTGATAATAT+TGG + chr1_4:55060067-55060086 None:intergenic 30.0%
!!! AGGCTGTTATTTTAACTACA+TGG - chr1_4:55060079-55060098 Msa0170730:intron 30.0%
!!! TCAACCTTGTTTTAACTACA+TGG + chr1_4:55060163-55060182 None:intergenic 30.0%
! TTCTCAAAATTGGGTTGTAA+AGG - chr1_4:55060255-55060274 Msa0170730:CDS 30.0%
GTTTATGCTATTGATCTTCT+TGG - chr1_4:55060329-55060348 Msa0170730:CDS 30.0%
CTTGATATTTAGGCAAAATG+TGG + chr1_4:55060544-55060563 None:intergenic 30.0%
! CACATTTTGCCTAAATATCA+AGG - chr1_4:55060542-55060561 Msa0170730:intron 30.0%
TGATGCAAACCTTGATATTT+AGG + chr1_4:55060554-55060573 None:intergenic 30.0%
TCAATACAAACAGTTGATCT+TGG - chr1_4:55060657-55060676 Msa0170730:intron 30.0%
!! ACAAAGCAATTGTTGATGAT+TGG - chr1_4:55060926-55060945 Msa0170730:intron 30.0%
!! TTTTTGAGCGTGTTAAACAA+AGG - chr1_4:55061022-55061041 Msa0170730:intron 30.0%
TTAAATGCAGAGAGAATTTG+AGG - chr1_4:55061110-55061129 Msa0170730:intron 30.0%
TACAAAACCAACGGTTAAAA+AGG + chr1_4:55061234-55061253 None:intergenic 30.0%
!!! TTGTCGTTTTCAAAGTTCAA+TGG - chr1_4:55061273-55061292 Msa0170730:intron 30.0%
GCATTTGTATCAATTGTAAC+AGG - chr1_4:55061411-55061430 Msa0170730:intron 30.0%
TCTCCCCATAAAAGTAAAAT+AGG + chr1_4:55061483-55061502 None:intergenic 30.0%
! TGAACATTTTCTTGTTGAGA+AGG + chr1_4:55061561-55061580 None:intergenic 30.0%
!! GGCAACTCTTTAAAATTCAT+AGG - chr1_4:55061662-55061681 Msa0170730:CDS 30.0%
! ATATGTGACAGTTTTTCATG+AGG + chr1_4:55061742-55061761 None:intergenic 30.0%
CTTCTTGATACAACGTATTT+GGG + chr1_4:55061909-55061928 None:intergenic 30.0%
GGTTTCTCAAACAACTTGAA+AGG - chr1_4:55059292-55059311 Msa0170730:three_prime_UTR 35.0%
!! CAATGAAGAAGAGTGTTCTT+TGG + chr1_4:55059366-55059385 None:intergenic 35.0%
! TTTTGGATGCTTAAGTGGTT+TGG + chr1_4:55059399-55059418 None:intergenic 35.0%
!!! CATTGTTTTGGATGCTTAAG+TGG + chr1_4:55059404-55059423 None:intergenic 35.0%
CACTTAAGCATCCAAAACAA+TGG - chr1_4:55059402-55059421 Msa0170730:three_prime_UTR 35.0%
TTAAGCATCCAAAACAATGG+TGG - chr1_4:55059405-55059424 Msa0170730:three_prime_UTR 35.0%
!! TGTTTCTACCACCATTGTTT+TGG + chr1_4:55059416-55059435 None:intergenic 35.0%
AGAAATGTCTTAAGTGGAAG+TGG - chr1_4:55059523-55059542 Msa0170730:exon 35.0%
AAATGAGTGGATGAGAATTG+TGG + chr1_4:55059706-55059725 None:intergenic 35.0%
ACGTACATGATTGAGAAGAA+AGG + chr1_4:55060140-55060159 None:intergenic 35.0%
ACGTCCATGTAGTTAAAACA+AGG - chr1_4:55060156-55060175 Msa0170730:intron 35.0%
!! TTGTGACATTTTAGAGGCAT+CGG + chr1_4:55060195-55060214 None:intergenic 35.0%
GACACTGTCTGAGAATTATA+CGG - chr1_4:55060307-55060326 Msa0170730:CDS 35.0%
! GCTATTGATCTTCTTGGTTT+TGG - chr1_4:55060335-55060354 Msa0170730:CDS 35.0%
TTTCGTATACCATGGAAACA+TGG - chr1_4:55060381-55060400 Msa0170730:intron 35.0%
TTCGTATACCATGGAAACAT+GGG - chr1_4:55060382-55060401 Msa0170730:intron 35.0%
TTGTAGTTTGGACTGCAAAT+TGG + chr1_4:55060460-55060479 None:intergenic 35.0%
CTGCATTGTAACTGTAATTG+CGG - chr1_4:55060518-55060537 Msa0170730:CDS 35.0%
ACAGTTGATCTTGGATTTCT+TGG - chr1_4:55060666-55060685 Msa0170730:intron 35.0%
GAGTTTCCTATTAGTACTGT+TGG + chr1_4:55060709-55060728 None:intergenic 35.0%
GTACTAATAGGAAACTCTGT+TGG - chr1_4:55060712-55060731 Msa0170730:intron 35.0%
ACTAGAGTTTCACTTGAATC+TGG + chr1_4:55060865-55060884 None:intergenic 35.0%
TCAAGTGAAACTCTAGTTAG+AGG - chr1_4:55060868-55060887 Msa0170730:CDS 35.0%
! GTGCTATTAAATTGTTCTGG+TGG - chr1_4:55060895-55060914 Msa0170730:intron 35.0%
AAATCAATCAGCCAAAGCAA+GGG + chr1_4:55060970-55060989 None:intergenic 35.0%
AAAATCAATCAGCCAAAGCA+AGG + chr1_4:55060971-55060990 None:intergenic 35.0%
AACATCTTGAGTTCAGTGTA+TGG - chr1_4:55061133-55061152 Msa0170730:intron 35.0%
GAGTTCAGTGTATGGAAATA+AGG - chr1_4:55061141-55061160 Msa0170730:intron 35.0%
TTCAGTGTATGGAAATAAGG+AGG - chr1_4:55061144-55061163 Msa0170730:intron 35.0%
TCAAAGTTCAATGGAATCAC+CGG - chr1_4:55061282-55061301 Msa0170730:intron 35.0%
!!! TTTTGGTTCCTCAGATCATT+AGG - chr1_4:55061358-55061377 Msa0170730:intron 35.0%
! TTTGGTTCCTCAGATCATTA+GGG - chr1_4:55061359-55061378 Msa0170730:intron 35.0%
!! GAAGAAAAGTACTTTCCAAC+AGG + chr1_4:55061534-55061553 None:intergenic 35.0%
TTCAACTGTTCATGCTTGAA+GGG - chr1_4:55061577-55061596 Msa0170730:CDS 35.0%
TCCATGAAAAATTGCTTCCA+TGG - chr1_4:55061637-55061656 Msa0170730:CDS 35.0%
! ACCATGGAAGCAATTTTTCA+TGG + chr1_4:55061641-55061660 None:intergenic 35.0%
TGAAAAATTGCTTCCATGGT+TGG - chr1_4:55061641-55061660 Msa0170730:CDS 35.0%
!! TTTTAAAGAGTTGCCAACCA+TGG + chr1_4:55061657-55061676 None:intergenic 35.0%
ATTTACACCACCATGTCTAT+TGG - chr1_4:55061806-55061825 Msa0170730:CDS 35.0%
TTTCTTCCTTCCAATAGACA+TGG + chr1_4:55061819-55061838 None:intergenic 35.0%
ATGTCTATTGGAAGGAAGAA+AGG - chr1_4:55061818-55061837 Msa0170730:CDS 35.0%
GCTTCTTGATACAACGTATT+TGG + chr1_4:55061910-55061929 None:intergenic 35.0%
! ACAAGTGCTGTTCATTCAGT+TGG - chr1_4:55059270-55059289 Msa0170730:three_prime_UTR 40.0%
! CAAGTGCTGTTCATTCAGTT+GGG - chr1_4:55059271-55059290 Msa0170730:three_prime_UTR 40.0%
GAAAGGTTCAACAGCATCAA+TGG - chr1_4:55059309-55059328 Msa0170730:three_prime_UTR 40.0%
! GGTTTTTGTGGATAGGAACA+AGG + chr1_4:55059337-55059356 None:intergenic 40.0%
! GTGTAGTGGTTTTTGTGGAT+AGG + chr1_4:55059344-55059363 None:intergenic 40.0%
!! CTTTGGTGTAGTGGTTTTTG+TGG + chr1_4:55059349-55059368 None:intergenic 40.0%
!! AAGAGTGTTCTTTGGTGTAG+TGG + chr1_4:55059358-55059377 None:intergenic 40.0%
TGTCTTAAGTGGAAGTGGAA+AGG - chr1_4:55059528-55059547 Msa0170730:exon 40.0%
AAGTAACAGAGGAGGGTTAT+TGG + chr1_4:55059610-55059629 None:intergenic 40.0%
!! TGTGCATTTTAGTGCCTAAG+TGG - chr1_4:55059825-55059844 Msa0170730:intron 40.0%
GGCATCATCATTTATCTGAC+AGG - chr1_4:55060276-55060295 Msa0170730:CDS 40.0%
ACAGTTCTTAATCGCAGTTG+CGG + chr1_4:55060592-55060611 None:intergenic 40.0%
CAGAAGCCAACAGTACTAAT+AGG - chr1_4:55060700-55060719 Msa0170730:intron 40.0%
! TTGCAGAAGCAATTCCCTTT+TGG + chr1_4:55061002-55061021 None:intergenic 40.0%
GAACTCGTGGAGGTAAATTA+AGG - chr1_4:55061178-55061197 Msa0170730:intron 40.0%
! CTTCGTTCCTTTTTAACCGT+TGG - chr1_4:55061224-55061243 Msa0170730:intron 40.0%
GATCCCTTTACTCCAATTGA+TGG - chr1_4:55061507-55061526 Msa0170730:intron 40.0%
GGTCCATCAATTGGAGTAAA+GGG + chr1_4:55061513-55061532 None:intergenic 40.0%
AGGTCCATCAATTGGAGTAA+AGG + chr1_4:55061514-55061533 None:intergenic 40.0%
TTTCCAACAGGTCCATCAAT+TGG + chr1_4:55061522-55061541 None:intergenic 40.0%
GTTCAACTGTTCATGCTTGA+AGG - chr1_4:55061576-55061595 Msa0170730:CDS 40.0%
TCAACTGTTCATGCTTGAAG+GGG - chr1_4:55061578-55061597 Msa0170730:CDS 40.0%
TAATTCAGGCCTGTCATCAT+GGG + chr1_4:55061616-55061635 None:intergenic 40.0%
AAGGTTACGTTCAGAGTTCT+TGG - chr1_4:55061837-55061856 Msa0170730:CDS 40.0%
AGGTTACGTTCAGAGTTCTT+GGG - chr1_4:55061838-55061857 Msa0170730:CDS 40.0%
TCAGAGTTCTTGGGAAAACA+TGG - chr1_4:55061847-55061866 Msa0170730:CDS 40.0%
GCTGCTTCCATAGAAACTTC+AGG - chr1_4:55059471-55059490 Msa0170730:three_prime_UTR 45.0%
CATGGACAAGTAACAGAGGA+GGG + chr1_4:55059617-55059636 None:intergenic 45.0%
AAGCCATGGACAAGTAACAG+AGG + chr1_4:55059621-55059640 None:intergenic 45.0%
! CTGTTACTTGTCCATGGCTT+TGG - chr1_4:55059621-55059640 Msa0170730:CDS 45.0%
GACGTGATTATGCACCACTT+AGG + chr1_4:55059842-55059861 None:intergenic 45.0%
ATGGTATACGAAAAGCCTGG+TGG + chr1_4:55060374-55060393 None:intergenic 45.0%
! ACCAGGCTTTTCGTATACCA+TGG - chr1_4:55060373-55060392 Msa0170730:intron 45.0%
TCCATGGTATACGAAAAGCC+TGG + chr1_4:55060377-55060396 None:intergenic 45.0%
! TGGGCTGAGGTATTTGTCTA+AGG - chr1_4:55060401-55060420 Msa0170730:intron 45.0%
TTGCGGCTGCAATTGTAGTT+TGG + chr1_4:55060472-55060491 None:intergenic 45.0%
AGTTACTCCTTCCCTTGCTT+TGG - chr1_4:55060956-55060975 Msa0170730:intron 45.0%
GTATGGAAATAAGGAGGCTG+TGG - chr1_4:55061150-55061169 Msa0170730:intron 45.0%
AGTTCAATGGAATCACCGGA+AGG - chr1_4:55061286-55061305 Msa0170730:intron 45.0%
TCCTCAGATCATTAGGGAAC+CGG - chr1_4:55061365-55061384 Msa0170730:intron 45.0%
!!! ATTTTTGGCACCAGTTGCAC+CGG + chr1_4:55061453-55061472 None:intergenic 45.0%
! ACTCCAATTGATGGACCTGT+TGG - chr1_4:55061516-55061535 Msa0170730:intron 45.0%
AATTCAGGCCTGTCATCATG+GGG + chr1_4:55061615-55061634 None:intergenic 45.0%
CTAATTCAGGCCTGTCATCA+TGG + chr1_4:55061617-55061636 None:intergenic 45.0%
ACACCACCATGTCTATTGGA+AGG - chr1_4:55061810-55061829 Msa0170730:CDS 45.0%
CTTCCTTCCAATAGACATGG+TGG + chr1_4:55061816-55061835 None:intergenic 45.0%
CCATGGACAAGTAACAGAGG+AGG + chr1_4:55059618-55059637 None:intergenic 50.0%
! CCTCCTCTGTTACTTGTCCA+TGG - chr1_4:55059615-55059634 Msa0170730:CDS 50.0%
!! GAATGGAAGCACCAAAGCCA+TGG + chr1_4:55059635-55059654 None:intergenic 50.0%
! TTGGTGCTTCCATTCCTCAC+TGG - chr1_4:55059640-55059659 Msa0170730:CDS 50.0%
ATACCTACGCCAGTGAGGAA+TGG + chr1_4:55059652-55059671 None:intergenic 50.0%
CAAACATACCTACGCCAGTG+AGG + chr1_4:55059657-55059676 None:intergenic 50.0%
! TACCATGGAAACATGGGCTG+AGG - chr1_4:55060388-55060407 Msa0170730:intron 50.0%
TACCTCAGCCCATGTTTCCA+TGG + chr1_4:55060393-55060412 None:intergenic 50.0%
! TGTCTCATTGCTGCTGCTTC+AGG - chr1_4:55060745-55060764 Msa0170730:intron 50.0%
CAATCAGCCAAAGCAAGGGA+AGG + chr1_4:55060966-55060985 None:intergenic 50.0%
TGTGGATGATGAACTCGTGG+AGG - chr1_4:55061168-55061187 Msa0170730:intron 50.0%
ATCAATTGTAACAGGGCCGC+CGG - chr1_4:55061419-55061438 Msa0170730:intron 50.0%
CTGTTCATGCTTGAAGGGGT+TGG - chr1_4:55061582-55061601 Msa0170730:CDS 50.0%
GACATTGTCCCCATGATGAC+AGG - chr1_4:55061604-55061623 Msa0170730:CDS 50.0%
CTTCCATTCCTCACTGGCGT+AGG - chr1_4:55059646-55059665 Msa0170730:CDS 55.0%
! GGAGCATCAGATAAGCCACC+AGG - chr1_4:55060356-55060375 Msa0170730:intron 55.0%
GGCTGTGGATGATGAACTCG+TGG - chr1_4:55061165-55061184 Msa0170730:intron 55.0%
! GCCGGTTCCCTAATGATCTG+AGG + chr1_4:55061369-55061388 None:intergenic 55.0%
AAGGCTCCTTCAGCATTCGC+CGG + chr1_4:55061387-55061406 None:intergenic 55.0%
TCAATTGTAACAGGGCCGCC+GGG - chr1_4:55061420-55061439 Msa0170730:intron 55.0%
AGGGAACCGGCGAATGCTGA+AGG - chr1_4:55061378-55061397 Msa0170730:intron 60.0%
CAATTGTAACAGGGCCGCCG+GGG - chr1_4:55061421-55061440 Msa0170730:intron 60.0%
! AGTTGCACCGGATTAGGCCC+CGG + chr1_4:55061441-55061460 None:intergenic 60.0%
GGCACCAGTTGCACCGGATT+AGG + chr1_4:55061447-55061466 None:intergenic 60.0%
GGGGCCTAATCCGGTGCAAC+TGG - chr1_4:55061440-55061459 Msa0170730:intron 65.0%
! TGCACCGGATTAGGCCCCGG+CGG + chr1_4:55061438-55061457 None:intergenic 70.0%
AGGGCCGCCGGGGCCTAATC+CGG - chr1_4:55061431-55061450 Msa0170730:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55059254 55061956 55059254 ID=Msa0170730;Name=Msa0170730
chr1_4 mRNA 55059254 55061956 55059254 ID=Msa0170730-mRNA-1;Parent=Msa0170730;Name=Msa0170730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=7|1|1|1|1|1|6|282|393
chr1_4 exon 55059254 55059838 55059254 ID=Msa0170730-mRNA-1:exon:16448;Parent=Msa0170730-mRNA-1
chr1_4 exon 55060021 55060090 55060021 ID=Msa0170730-mRNA-1:exon:16447;Parent=Msa0170730-mRNA-1
chr1_4 exon 55060167 55060355 55060167 ID=Msa0170730-mRNA-1:exon:16446;Parent=Msa0170730-mRNA-1
chr1_4 exon 55060440 55060540 55060440 ID=Msa0170730-mRNA-1:exon:16445;Parent=Msa0170730-mRNA-1
chr1_4 exon 55060801 55060912 55060801 ID=Msa0170730-mRNA-1:exon:16444;Parent=Msa0170730-mRNA-1
chr1_4 exon 55061543 55061956 55061543 ID=Msa0170730-mRNA-1:exon:16443;Parent=Msa0170730-mRNA-1
chr1_4 five_prime_UTR 55061950 55061956 55061950 ID=Msa0170730-mRNA-1:five_prime_utr;Parent=Msa0170730-mRNA-1
chr1_4 CDS 55061543 55061949 55061543 ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4 CDS 55060801 55060912 55060801 ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4 CDS 55060440 55060540 55060440 ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4 CDS 55060167 55060355 55060167 ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4 CDS 55060021 55060090 55060021 ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4 CDS 55059536 55059838 55059536 ID=Msa0170730-mRNA-1:cds;Parent=Msa0170730-mRNA-1
chr1_4 three_prime_UTR 55059254 55059535 55059254 ID=Msa0170730-mRNA-1:three_prime_utr;Parent=Msa0170730-mRNA-1
Gene Sequence

>Msa0170730

ATGGAAGTGACAAGTGCTGTTCATTCAGTTGGGTTTCTCAAACAACTTGAAAGGTTCAACAGCATCAATGGATCCTTGTTCCTATCCACAAAAACCACTACACCAAAGAACACTCTTCTTCATTGTTATCTTCATCCAAACCACTTAAGCATCCAAAACAATGGTGGTAGAAACAGTAAAAGTGTGATCATCAACTCAACTTCTTCTTCTGCTGCTTCCATAGAAACTTCAGGATCATTATCTGAAGTTGAAAAGATAAAGCAGAAATGTCTTAAGTGGAAGTGGAAAGGTGAATATTCCATAAATTATTTTGTTTCTTTAGACTCATCTTCAGATTCTGCAAAGTCCAATAACCCTCCTCTGTTACTTGTCCATGGCTTTGGTGCTTCCATTCCTCACTGGCGTAGGAATATCAAGACACTGTCTGAGAATTATACGGTTTATGCTATTGATCTTCTTGGTTTTGGAGCATCAGATAAGCCACCAGGCTTTTCGTATACCATGGAAACATGGGCTGAGTTGATCTTGGATTTCTTGGATGAAGTTGTTCAGAAGCCAACAGTACTAATAGGAAACTCTGTTGGAAGTCTTGCTTGTCTCATTGCTGCTGCTTCAGGCATTATTCGACCAGATTCAAGTGAAACTCTAGTTAGAGGAATTGTGCTATTAAATTGTTCTGGTGGCATGAACAACAAAGCAATTGTTGATGATTGGAGAATCAAGTTACTCCTTCCCTTGCTTTGGCTGATTGATTTTTTATTGAACCAAAAGGGAATTGCTTCTGCAATTTTTGAGCGTGTTAAACAAAGAGAGAATTTGAGGAACATCTTGAGTTCAGTGTATGGAAATAAGGAGGCTGTGGATGATGAACTCGTGGAGATCATTAGGGAACCGGCGAATGCTGAAGGAGCCTTAGATGCATTTGTATCAATTGTAACAGGGCCGCCGGGGCCTAATCCGGTGCAACTGGTGCCAAAAATATCATTGCCTATTTTACTTTTATGGGGAGATGAAGATCCCTTTACTCCAATTGATGGACCTGTTGGAAAGTACTTTTCTTCATTGCCTTCTCAACAAGAAAATGTTCAACTGTTCATGCTTGAAGGGGTTGGACATTGTCCCCATGATGACAGGCCTGAATTAGTCCATGAAAAATTGCTTCCATGGTTGGCAACTCTTTAA

Protein sequence

>Msa0170730

MEVTSAVHSVGFLKQLERFNSINGSLFLSTKTTTPKNTLLHCYLHPNHLSIQNNGGRNSKSVIINSTSSSAASIETSGSLSEVEKIKQKCLKWKWKGEYSINYFVSLDSSSDSAKSNNPPLLLVHGFGASIPHWRRNIKTLSENYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLDEVVQKPTVLIGNSVGSLACLIAAASGIIRPDSSETLVRGIVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLNQKGIASAIFERVKQRENLRNILSSVYGNKEAVDDELVEIIREPANAEGALDAFVSIVTGPPGPNPVQLVPKISLPILLLWGDEDPFTPIDGPVGKYFSSLPSQQENVQLFMLEGVGHCPHDDRPELVHEKLLPWLATL*