AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831460 MtrunA17_Chr5g0394811 93.681 364 23 0 6 369 115 478 0.0 726
Msa0831460 MtrunA17_Chr5g0394811 70.543 129 32 1 18 140 1 129 2.50e-52 180
Msa0831460 MtrunA17_Chr5g0394861 82.749 371 62 1 1 369 1 371 0.0 651
Msa0831460 MtrunA17_Chr5g0394891 82.385 369 65 0 1 369 1 369 0.0 651
Msa0831460 MtrunA17_Chr5g0394751 82.645 363 57 1 7 369 3 359 0.0 640
Msa0831460 MtrunA17_Chr5g0394841 78.437 371 78 1 1 369 1 371 0.0 632
Msa0831460 MtrunA17_Chr5g0395841 78.261 368 80 0 1 368 3 370 0.0 619
Msa0831460 MtrunA17_Chr5g0394771 77.778 369 76 1 1 369 29 391 0.0 615
Msa0831460 MtrunA17_Chr3g0144001 65.041 369 123 2 1 369 1 363 0.0 517
Msa0831460 MtrunA17_Chr4g0070561 54.032 372 154 5 12 368 19 388 1.08e-142 410
Msa0831460 MtrunA17_Chr5g0394791 72.021 193 48 1 8 200 7 193 4.86e-97 286
Msa0831460 MtrunA17_Chr5g0394801 71.123 187 27 1 175 361 26 185 4.71e-88 265
Msa0831460 MtrunA17_Chr3g0130471 61.818 55 18 1 194 248 1 52 6.11e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831460 AT1G76690.1 71.274 369 106 0 1 369 3 371 0.0 574
Msa0831460 AT1G76680.1 70.190 369 110 0 1 369 1 369 0.0 561
Msa0831460 AT1G76680.2 65.736 394 110 1 1 369 1 394 0.0 547
Msa0831460 AT1G09400.1 65.758 330 107 1 18 347 1 324 4.32e-174 487
Msa0831460 AT1G09400.2 65.926 270 86 1 78 347 2 265 3.75e-140 399
Msa0831460 AT2G06050.2 48.446 386 180 4 1 368 1 385 8.77e-134 388
Msa0831460 AT2G06050.1 48.446 386 180 4 1 368 1 385 8.77e-134 388
Msa0831460 AT2G06050.3 48.446 386 180 4 1 368 1 385 8.77e-134 388
Msa0831460 AT1G17990.1 66.540 263 81 3 5 266 2 258 4.03e-132 379
Msa0831460 AT1G18020.1 66.540 263 81 3 5 266 2 258 4.03e-132 379
Msa0831460 AT1G17990.2 63.498 263 81 4 5 266 2 250 1.98e-123 356

Find 111 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTATAACTGAAAAT+AGG 0.181027 5_4:-4439351 Msa0831460:CDS
TCATCAACAATTTCCATTCT+TGG 0.190977 5_4:+4439466 None:intergenic
CCAAGAATTGGGACTTTATA+TGG 0.196652 5_4:-4439536 Msa0831460:CDS
TCACATTAATTTGATTTAAT+TGG 0.200783 5_4:-4441437 Msa0831460:five_prime_UTR
TTAAAGCCATTGACAATATT+AGG 0.218480 5_4:+4440025 None:intergenic
CTCCTCTTAACAAGTATAAT+AGG 0.235128 5_4:-4439258 Msa0831460:CDS
GCAAATCTCTTTGGTAAATC+TGG 0.250222 5_4:+4439289 None:intergenic
TACACTTCTGATCCAATTCT+TGG 0.259451 5_4:-4439226 Msa0831460:CDS
AAATCGTTGTAGATTTGTTT+TGG 0.271540 5_4:-4439656 Msa0831460:CDS
GGCTTCCTTAATCGGTGTTC+CGG 0.273683 5_4:+4437859 None:intergenic
CTACATTCTTCTGTCAGATT+TGG 0.278155 5_4:-4441002 Msa0831460:CDS
CCATATAAAGTCCCAATTCT+TGG 0.281748 5_4:+4439536 None:intergenic
TGATTTAATTGGTATCAAAA+TGG 0.309587 5_4:-4441426 Msa0831460:exon
AGGGCAGATCTTATTGCTTA+TGG 0.315216 5_4:-4439331 Msa0831460:CDS
ATATCCCGGAACACCGATTA+AGG 0.320768 5_4:-4437864 Msa0831460:three_prime_UTR
ATCCAGACACCCCAGGTATA+TGG 0.320997 5_4:-4441083 Msa0831460:CDS
CCGATTAAGGAAGCCTTAAA+AGG 0.323704 5_4:-4437851 Msa0831460:three_prime_UTR
GTTAATGCCCTCAATAAATA+TGG 0.323996 5_4:-4439514 Msa0831460:CDS
GATAAGAAGACCACCTTTAG+AGG 0.326530 5_4:+4441143 None:intergenic
GATATTGGTGCTTGCCCATT+TGG 0.334904 5_4:+4440142 None:intergenic
CATATAAAGTCCCAATTCTT+GGG 0.338658 5_4:+4439537 None:intergenic
GACTCACCTTGGATAATATA+TGG 0.340462 5_4:+4439146 None:intergenic
AAAAGTAATTAACTGTTGTT+AGG 0.346374 5_4:+4437680 None:intergenic
AAACTACTCACACCACAAAT+TGG 0.358876 5_4:-4440109 Msa0831460:CDS
AGGCATTAATTGTTGCTTCC+AGG 0.359229 5_4:-4437727 Msa0831460:three_prime_UTR
GTCCATATACCTGGGGTGTC+TGG 0.359717 5_4:+4441081 None:intergenic
TGGTATTCTTTATTGTCATA+TGG 0.365038 5_4:-4439494 Msa0831460:CDS
GCATTAAGTGCAAATCTCTT+TGG 0.366211 5_4:+4439280 None:intergenic
AGACTCAAATCCCCAAGAAT+TGG 0.370867 5_4:-4439548 Msa0831460:CDS
GCTTCCTTAATCGGTGTTCC+GGG 0.373173 5_4:+4437860 None:intergenic
AGTTTGTCTGTTGAAGATAT+TGG 0.380484 5_4:+4440127 None:intergenic
TCCCTATTATACTTGTTAAG+AGG 0.383924 5_4:+4439256 None:intergenic
CTCATGGATCATTCAAGAAA+AGG 0.395876 5_4:+4439190 None:intergenic
CAATGCTATAACTGAAAATA+GGG 0.397983 5_4:-4439350 Msa0831460:CDS
TCTTCTGTTCTTAGCCTCCT+TGG 0.404793 5_4:+4440052 None:intergenic
TTGAAATTGCCCATCTTGTA+AGG 0.410446 5_4:+4441365 None:intergenic
CCATTGAAAACCTTTCTCAT+TGG 0.416074 5_4:+4439415 None:intergenic
TCCTCTTAACAAGTATAATA+GGG 0.422103 5_4:-4439257 Msa0831460:CDS
GCAATTTCAATCTCTCTCAT+AGG 0.425449 5_4:-4441352 Msa0831460:intron
CATACAGTTTGTCAACCAAA+TGG 0.430266 5_4:-4440157 Msa0831460:intron
AAAGAATACCATATTTATTG+AGG 0.434046 5_4:+4439506 None:intergenic
GACTCAAATCCCCAAGAATT+GGG 0.434228 5_4:-4439547 Msa0831460:CDS
ACAGAAGAATGTAGCACCTT+TGG 0.437106 5_4:+4441011 None:intergenic
GAAATTCCTAATATTGTCAA+TGG 0.437295 5_4:-4440031 Msa0831460:CDS
GTACCATCACCTCCAATTTG+TGG 0.439210 5_4:+4440097 None:intergenic
CTCACTAGAATAAGATCATA+TGG 0.451776 5_4:-4441210 Msa0831460:CDS
TCTTATTACACCTTACAAGA+TGG 0.451798 5_4:-4441375 Msa0831460:CDS
TGCTCTTTAGTCCATATACC+TGG 0.459561 5_4:+4441072 None:intergenic
ACAGGACACAGATCAATTGA+TGG 0.459700 5_4:-4437913 Msa0831460:intron
TAGTCGGTATAACCAAGAAT+TGG 0.464873 5_4:+4439214 None:intergenic
AACGACAGAACAGATGAATA+TGG 0.465016 5_4:-4439691 Msa0831460:CDS
TCATGGATCATTCAAGAAAA+GGG 0.465755 5_4:+4439191 None:intergenic
AGGACCTCTGAGAGTAATAG+AGG 0.468360 5_4:+4441163 None:intergenic
TAGAGGATGGCATGAGGTTG+TGG 0.468564 5_4:+4441180 None:intergenic
TAGCTTGGCACCAATGAGAA+AGG 0.476232 5_4:-4439425 Msa0831460:CDS
TAAGGTGTAATAAGAGGAAT+GGG 0.482782 5_4:+4441383 None:intergenic
GAGATAGGTGCAGAAAGAGT+TGG 0.488228 5_4:-4439610 Msa0831460:CDS
AAGAATACCATATTTATTGA+GGG 0.490058 5_4:+4439507 None:intergenic
AACTGAATGTCATTATAGCT+TGG 0.490545 5_4:-4439440 Msa0831460:CDS
GCATGAACAGCATCTACAAT+GGG 0.496515 5_4:+4441033 None:intergenic
TCATATGGTGGAGCCAAGAA+TGG 0.499035 5_4:-4439479 Msa0831460:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.500651 5_4:-4439757 Msa0831460:CDS
GCTCTTTAGTCCATATACCT+GGG 0.511038 5_4:+4441073 None:intergenic
GTAAGGTGTAATAAGAGGAA+TGG 0.511089 5_4:+4441382 None:intergenic
TTCTGTCAGATTTGGCATGT+TGG 0.513208 5_4:-4440994 Msa0831460:CDS
GAAGCTATTGCAAATGAGAT+AGG 0.513935 5_4:-4439625 Msa0831460:CDS
AATATGCAATTCAATTTGAG+AGG 0.514217 5_4:+4441482 None:intergenic
CTTATTACACCTTACAAGAT+GGG 0.515387 5_4:-4441374 Msa0831460:CDS
CTTCTTATCGCTGAAGCTAC+CGG 0.516845 5_4:-4441129 Msa0831460:CDS
ATCTTGTAAGGTGTAATAAG+AGG 0.519989 5_4:+4441377 None:intergenic
TCTGTTCTTAGCCTCCTTGG+TGG 0.522540 5_4:+4440055 None:intergenic
ATACAGTTTGTCAACCAAAT+GGG 0.523723 5_4:-4440156 Msa0831460:intron
AAGTGTTGTTCACTATAAAA+CGG 0.523903 5_4:+4437578 None:intergenic
CTCCTTGGTGGTGTGAATTG+TGG 0.527123 5_4:+4440067 None:intergenic
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5_4:+4439722 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5_4:-4439748 Msa0831460:CDS
GCAAGAAATGCTATTGAAGC+TGG 0.534377 5_4:-4439995 Msa0831460:intron
TATTCTTTATTGTCATATGG+TGG 0.548414 5_4:-4439491 Msa0831460:CDS
TACTCTCAGAGGTCCTCTAA+AGG 0.549191 5_4:-4441156 Msa0831460:CDS
CTCTTTAGTCCATATACCTG+GGG 0.549807 5_4:+4441074 None:intergenic
GATAATAGATAGTAATTGAT+CGG 0.555558 5_4:+4437792 None:intergenic
TCACCTTGGATGCTACCTCA+TGG 0.560233 5_4:+4439174 None:intergenic
GATCCATGAGGTAGCATCCA+AGG 0.560598 5_4:-4439177 Msa0831460:three_prime_UTR
ACACCACAAATTGGAGGTGA+TGG 0.561195 5_4:-4440100 Msa0831460:CDS
ATATAAAGTCCCAATTCTTG+GGG 0.575625 5_4:+4439538 None:intergenic
GGAGGCTATGAAAGACAAGA+TGG 0.576086 5_4:-4439376 Msa0831460:CDS
ATGCAATTCAATTTGAGAGG+GGG 0.577441 5_4:+4441485 None:intergenic
CTACTCACACCACAAATTGG+AGG 0.577932 5_4:-4440106 Msa0831460:CDS
GGTCATGTTAAACAATATCC+CGG 0.582783 5_4:-4437878 Msa0831460:three_prime_UTR
AAACTTCCATATATTATCCA+AGG 0.584912 5_4:-4439152 Msa0831460:intron
CTAAAGAGCAAGTTGAGGCA+TGG 0.586424 5_4:-4441059 Msa0831460:CDS
GGCATGAACAGCATCTACAA+TGG 0.589084 5_4:+4441032 None:intergenic
ATATGCAATTCAATTTGAGA+GGG 0.591326 5_4:+4441483 None:intergenic
AATATATGGAAGTTTCACCT+TGG 0.592715 5_4:+4439160 None:intergenic
CAAGGATATCCAGACACCCC+AGG 0.595672 5_4:-4441090 Msa0831460:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5_4:+4439740 None:intergenic
TATGATCTTATTCTAGTGAG+TGG 0.602551 5_4:+4441213 None:intergenic
GGTGTATCTGATACCGCTCA+AGG 0.616814 5_4:-4441108 Msa0831460:CDS
CCATCCTCTATTACTCTCAG+AGG 0.623632 5_4:-4441167 Msa0831460:CDS
TCATTCAAGAAAAGGGTAGT+CGG 0.624730 5_4:+4439198 None:intergenic
CCTCTGAGAGTAATAGAGGA+TGG 0.634193 5_4:+4441167 None:intergenic
TCTCAGAGGTCCTCTAAAGG+TGG 0.653585 5_4:-4441153 Msa0831460:CDS
GTAGATGCTGTTCATGCCAA+AGG 0.654488 5_4:-4441027 Msa0831460:CDS
GAGTAATAGAGGATGGCATG+AGG 0.655190 5_4:+4441174 None:intergenic
GACAGAACAGATGAATATGG+TGG 0.658731 5_4:-4439688 Msa0831460:CDS
TTGAGCGGTATCAGATACAC+CGG 0.663000 5_4:+4441110 None:intergenic
TATGCAATTCAATTTGAGAG+GGG 0.675421 5_4:+4441484 None:intergenic
ATGGACTAAAGAGCAAGTTG+AGG 0.679299 5_4:-4441064 Msa0831460:CDS
CACAATTCACACCACCAAGG+AGG 0.702235 5_4:-4440066 Msa0831460:CDS
TGCCACAATTCACACCACCA+AGG 0.706911 5_4:-4440069 Msa0831460:CDS
GGTGTCTGGATATCCTTGAG+CGG 0.711074 5_4:+4441095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAAATAATTAATT+AGG + chr5_4:4440817-4440836 None:intergenic 0.0%
!!! TTTAATTTAAATAATTAATT+AGG - chr5_4:4440817-4440836 Msa0831460:intron 0.0%
!!! TAATGCTATTTTTTTTAATA+GGG - chr5_4:4438381-4438400 Msa0831460:intron 10.0%
!! AATTTAAATAATTAATTAGG+TGG + chr5_4:4440820-4440839 None:intergenic 10.0%
!!! TTTTTTTCATGTATTTTTAA+TGG - chr5_4:4440513-4440532 Msa0831460:intron 10.0%
!!! TTTTTTCATGTATTTTTAAT+GGG - chr5_4:4440514-4440533 Msa0831460:intron 10.0%
!!! TAATTTTTTTCTTCATTTTA+AGG - chr5_4:4440732-4440751 Msa0831460:intron 10.0%
!! AATTTAAATAATTAATTAGG+TGG - chr5_4:4440820-4440839 Msa0831460:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr5_4:4440893-4440912 Msa0831460:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr5_4:4440893-4440912 Msa0831460:intron 100.0%
!!! TCACATTAATTTGATTTAAT+TGG - chr5_4:4437651-4437670 Msa0831460:three_prime_UTR 15.0%
!!! ATTGAAATTGAAAGTATAAT+AGG + chr5_4:4437764-4437783 None:intergenic 15.0%
!!! TCTAGTATGTATTTAATTTT+AGG - chr5_4:4438130-4438149 Msa0831460:intron 15.0%
!!! AAATGCTATTTTGTTTAATA+GGG + chr5_4:4438206-4438225 None:intergenic 15.0%
!!! AAAATGCTATTTTGTTTAAT+AGG + chr5_4:4438207-4438226 None:intergenic 15.0%
!!! ATTAAACAAAATAGCATTTT+TGG - chr5_4:4438207-4438226 Msa0831460:intron 15.0%
!!! CTAATGCTATTTTTTTTAAT+AGG - chr5_4:4438380-4438399 Msa0831460:intron 15.0%
!!! AATGCTATTTTTTTTAATAG+GGG - chr5_4:4438382-4438401 Msa0831460:intron 15.0%
!!! ATTTTTCAAGTATTACTTTT+AGG - chr5_4:4438497-4438516 Msa0831460:intron 15.0%
!! AAGAAAGTAATAAATAGTTA+AGG + chr5_4:4438672-4438691 None:intergenic 15.0%
!! AAATGTAATTAATATTGTGT+GGG + chr5_4:4438773-4438792 None:intergenic 15.0%
!! AAATTGAATCAATTGAATTA+TGG + chr5_4:4439143-4439162 None:intergenic 15.0%
!!! TCTAGTTTAATTACTATAAT+AGG - chr5_4:4439270-4439289 Msa0831460:CDS 15.0%
!! GAGTCTATATTATATATTTA+AGG - chr5_4:4439960-4439979 Msa0831460:intron 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr5_4:4440238-4440257 Msa0831460:intron 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr5_4:4440238-4440257 Msa0831460:intron 15.0%
!! AAAAAATCCAAAAAAATACA+TGG - chr5_4:4440379-4440398 Msa0831460:intron 15.0%
!! AAAATTCCATTAAAAATACA+TGG - chr5_4:4440402-4440421 Msa0831460:intron 15.0%
!! AAAATTCCATTAAAAATACA+TGG + chr5_4:4440402-4440421 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG + chr5_4:4440238-4440257 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG + chr5_4:4440238-4440257 None:intergenic 15.0%
!!! AAAATTCTGAGTTTTAAAAT+AGG - chr5_4:4440918-4440937 Msa0831460:intron 15.0%
!!! AAATTCTGAGTTTTAAAATA+GGG - chr5_4:4440919-4440938 Msa0831460:intron 15.0%
!!! TTGATACTTATATATTTTAC+AGG - chr5_4:4441157-4441176 Msa0831460:CDS 15.0%
!! TGATTTAATTGGTATCAAAA+TGG - chr5_4:4437662-4437681 Msa0831460:three_prime_UTR 20.0%
!!! AATGCTATTTTGTTTAATAG+GGG + chr5_4:4438205-4438224 None:intergenic 20.0%
!!! ATGCTATTTTTTTTAATAGG+GGG - chr5_4:4438383-4438402 Msa0831460:intron 20.0%
!! TTGCTCATTTGATAAAATTA+AGG + chr5_4:4438457-4438476 None:intergenic 20.0%
!! AAGTAACATTAATGTTTCAT+TGG + chr5_4:4438637-4438656 None:intergenic 20.0%
!! CTTTCACATATCATTTATTA+AGG - chr5_4:4438714-4438733 Msa0831460:intron 20.0%
!! GAAATGTAATTAATATTGTG+TGG + chr5_4:4438774-4438793 None:intergenic 20.0%
!! AGAGATAAAAATTGTTACAA+AGG - chr5_4:4439190-4439209 Msa0831460:exon 20.0%
!!! TTATCACCTTTTGAAAAATT+TGG - chr5_4:4439508-4439527 Msa0831460:CDS 20.0%
!! AAGAATACCATATTTATTGA+GGG + chr5_4:4439584-4439603 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG + chr5_4:4439585-4439604 None:intergenic 20.0%
!!! AAATTCCGAGTTTTAAAATA+GGG + chr5_4:4440979-4440998 None:intergenic 20.0%
!!! AAAATTCCGAGTTTTAAAAT+AGG + chr5_4:4440978-4440997 None:intergenic 20.0%
!! ATTCCGAAAAACATTAAAAT+GGG + chr5_4:4440066-4440085 None:intergenic 20.0%
!! AATTCCGAAAAACATTAAAA+TGG + chr5_4:4440067-4440086 None:intergenic 20.0%
!!! GAATTTTTTTCTGCATTTTA+AGG + chr5_4:4440207-4440226 None:intergenic 20.0%
!!! AGTATTTTTTCTGCATTTTA+AGG + chr5_4:4440630-4440649 None:intergenic 20.0%
!!! GAATTTTCCATGTATTTTTT+TGG + chr5_4:4440389-4440408 None:intergenic 20.0%
!!! TATTAGCCATGTATTTTTAA+TGG + chr5_4:4440411-4440430 None:intergenic 20.0%
!! AAAAATACATGGCTAATATT+TGG - chr5_4:4440413-4440432 Msa0831460:intron 20.0%
!! TATTTGGATGATCAATTATT+AGG - chr5_4:4440429-4440448 Msa0831460:intron 20.0%
!!! GTTTTTCCATGTATTTTTAA+TGG - chr5_4:4440556-4440575 Msa0831460:intron 20.0%
!!! GGAATTTTTTTTGTTTATTC+TGG - chr5_4:4440577-4440596 Msa0831460:intron 20.0%
!!! AGTATTTTTTCTGCATTTTA+AGG - chr5_4:4440630-4440649 Msa0831460:intron 20.0%
!! AATTCCGAAAAACATTAAAT+TGG - chr5_4:4440872-4440891 Msa0831460:intron 20.0%
!! ATTCCGAAAAACATTAAATT+GGG - chr5_4:4440873-4440892 Msa0831460:intron 20.0%
!!! AATTCTGAGTTTTAAAATAG+GGG - chr5_4:4440920-4440939 Msa0831460:intron 20.0%
!! AATTCCGAAAAACATTAAAT+TGG - chr5_4:4440872-4440891 Msa0831460:intron 20.0%
!! ATTCCGAAAAACATTAAATT+GGG - chr5_4:4440873-4440892 Msa0831460:intron 20.0%
!!! AAATTCCGAGTTTTAAAATA+AGG - chr5_4:4440979-4440998 Msa0831460:CDS 20.0%
!!! AATTCCGAGTTTTAAAATAA+GGG - chr5_4:4440980-4440999 Msa0831460:CDS 20.0%
!! GATAATAGATAGTAATTGAT+CGG + chr5_4:4441299-4441318 None:intergenic 20.0%
!! AAAAGTAATTAACTGTTGTT+AGG + chr5_4:4441411-4441430 None:intergenic 20.0%
! ATATGCAATTCAATTTGAGA+GGG + chr5_4:4437608-4437627 None:intergenic 25.0%
! AATATGCAATTCAATTTGAG+AGG + chr5_4:4437609-4437628 None:intergenic 25.0%
!!! ATGCTATTTTGTTTAATAGG+GGG + chr5_4:4438204-4438223 None:intergenic 25.0%
!!! TGCAACTTTTTCTAAAGATA+AGG - chr5_4:4438288-4438307 Msa0831460:intron 25.0%
!!! GCAACTTTTTCTAAAGATAA+GGG - chr5_4:4438289-4438308 Msa0831460:intron 25.0%
!!! CAACTTTTTCTAAAGATAAG+GGG - chr5_4:4438290-4438309 Msa0831460:intron 25.0%
! CATATTTCCTTTATGTTAGA+GGG - chr5_4:4438322-4438341 Msa0831460:intron 25.0%
!!! TTTCAAGTATTACTTTTAGG+TGG - chr5_4:4438500-4438519 Msa0831460:intron 25.0%
!!! TTCAAGTATTACTTTTAGGT+GGG - chr5_4:4438501-4438520 Msa0831460:intron 25.0%
! GAAATTCCTAATATTGTCAA+TGG - chr5_4:4439057-4439076 Msa0831460:intron 25.0%
! TTAAAGCCATTGACAATATT+AGG + chr5_4:4439066-4439085 None:intergenic 25.0%
!! AGACATTTTACATACTTGTA+TGG - chr5_4:4439294-4439313 Msa0831460:CDS 25.0%
!!! TGAAAATTGTAGGTTTTGAT+GGG - chr5_4:4439317-4439336 Msa0831460:CDS 25.0%
!! AAATCTACAACGATTTTCAA+GGG + chr5_4:4439428-4439447 None:intergenic 25.0%
!!! AAATCGTTGTAGATTTGTTT+TGG - chr5_4:4439432-4439451 Msa0831460:CDS 25.0%
!!! CAATCTCCAAATTTTTCAAA+AGG + chr5_4:4439517-4439536 None:intergenic 25.0%
! TTTGAAAAATTTGGAGATTG+TGG - chr5_4:4439517-4439536 Msa0831460:CDS 25.0%
! TGGTATTCTTTATTGTCATA+TGG - chr5_4:4439594-4439613 Msa0831460:CDS 25.0%
! TATTCTTTATTGTCATATGG+TGG - chr5_4:4439597-4439616 Msa0831460:CDS 25.0%
! TCAATGCTATAACTGAAAAT+AGG - chr5_4:4439737-4439756 Msa0831460:CDS 25.0%
! CAATGCTATAACTGAAAATA+GGG - chr5_4:4439738-4439757 Msa0831460:CDS 25.0%
! TCCTCTTAACAAGTATAATA+GGG - chr5_4:4439831-4439850 Msa0831460:intron 25.0%
! AAACTTCCATATATTATCCA+AGG - chr5_4:4439936-4439955 Msa0831460:intron 25.0%
! TATATAATATAGACTCACCT+TGG + chr5_4:4439956-4439975 None:intergenic 25.0%
!!! AATTCCGAGTTTTAAAATAG+GGG + chr5_4:4440037-4440056 None:intergenic 25.0%
! TTCCGAAAAACATTAAAATG+GGG + chr5_4:4440065-4440084 None:intergenic 25.0%
! TAATAAGATAATGTGGTAGA+GGG + chr5_4:4440095-4440114 None:intergenic 25.0%
! ATAATAAGATAATGTGGTAG+AGG + chr5_4:4440096-4440115 None:intergenic 25.0%
!!! TTGGATTTTTTCGTTTATTC+AGG + chr5_4:4440370-4440389 None:intergenic 25.0%
! TATTATTGCACTCGTATATT+TGG - chr5_4:4440454-4440473 Msa0831460:intron 25.0%
! ATGATCATCCAAATATTTAC+AGG - chr5_4:4440480-4440499 Msa0831460:intron 25.0%
! ATAATGCACCTGTAAATATT+TGG + chr5_4:4440491-4440510 None:intergenic 25.0%
! ACATGGAAAAACAGTATAAA+CGG + chr5_4:4440548-4440567 None:intergenic 25.0%
! TTCCGAAAAACATTAAATTG+GGG - chr5_4:4440874-4440893 Msa0831460:intron 25.0%
!!! ATTCTGAGTTTTAAAATAGG+GGG - chr5_4:4440921-4440940 Msa0831460:intron 25.0%
! TTCCGAAAAACATTAAATTG+GGG - chr5_4:4440874-4440893 Msa0831460:intron 25.0%
!!! ATTCCGAGTTTTAAAATAAG+GGG - chr5_4:4440981-4441000 Msa0831460:CDS 25.0%
! CATGGTCATACATTAAATAT+AGG + chr5_4:4441056-4441075 None:intergenic 25.0%
! ATAAGAGACAAAAATGAAGT+TGG - chr5_4:4441116-4441135 Msa0831460:CDS 25.0%
! AATTGATGGAGAAACAAAAA+AGG - chr5_4:4441189-4441208 Msa0831460:CDS 25.0%
!! CAATGAAAAACTTCCTTTTA+AGG + chr5_4:4441253-4441272 None:intergenic 25.0%
!! AAGTGTTGTTCACTATAAAA+CGG + chr5_4:4441513-4441532 None:intergenic 25.0%
TATGCAATTCAATTTGAGAG+GGG + chr5_4:4437607-4437626 None:intergenic 30.0%
TAAGGTGTAATAAGAGGAAT+GGG + chr5_4:4437708-4437727 None:intergenic 30.0%
ATCTTGTAAGGTGTAATAAG+AGG + chr5_4:4437714-4437733 None:intergenic 30.0%
TCTTATTACACCTTACAAGA+TGG - chr5_4:4437713-4437732 Msa0831460:three_prime_UTR 30.0%
CTTATTACACCTTACAAGAT+GGG - chr5_4:4437714-4437733 Msa0831460:three_prime_UTR 30.0%
TATGATCTTATTCTAGTGAG+TGG + chr5_4:4437878-4437897 None:intergenic 30.0%
CTCACTAGAATAAGATCATA+TGG - chr5_4:4437878-4437897 Msa0831460:three_prime_UTR 30.0%
GCATATTTCCTTTATGTTAG+AGG - chr5_4:4438321-4438340 Msa0831460:intron 30.0%
AGCATATTTCCCTAAACATA+GGG - chr5_4:4438352-4438371 Msa0831460:intron 30.0%
AAGTGACAGGTGTATAATTT+GGG + chr5_4:4438607-4438626 None:intergenic 30.0%
AAAGTGACAGGTGTATAATT+TGG + chr5_4:4438608-4438627 None:intergenic 30.0%
TGACAAACTGTATGGAATAT+AGG + chr5_4:4438925-4438944 None:intergenic 30.0%
ATACAGTTTGTCAACCAAAT+GGG - chr5_4:4438932-4438951 Msa0831460:intron 30.0%
AGTTTGTCTGTTGAAGATAT+TGG + chr5_4:4438964-4438983 None:intergenic 30.0%
ACTTGTATGGTGAAAATTGT+AGG - chr5_4:4439307-4439326 Msa0831460:CDS 30.0%
!! GTGAAAATTGTAGGTTTTGA+TGG - chr5_4:4439316-4439335 Msa0831460:CDS 30.0%
!! GAAAATTGTAGGTTTTGATG+GGG - chr5_4:4439318-4439337 Msa0831460:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG + chr5_4:4439369-4439388 None:intergenic 30.0%
! CAAATCTACAACGATTTTCA+AGG + chr5_4:4439429-4439448 None:intergenic 30.0%
ATATAAAGTCCCAATTCTTG+GGG + chr5_4:4439553-4439572 None:intergenic 30.0%
CATATAAAGTCCCAATTCTT+GGG + chr5_4:4439554-4439573 None:intergenic 30.0%
GTTAATGCCCTCAATAAATA+TGG - chr5_4:4439574-4439593 Msa0831460:CDS 30.0%
TCATCAACAATTTCCATTCT+TGG + chr5_4:4439625-4439644 None:intergenic 30.0%
AACTGAATGTCATTATAGCT+TGG - chr5_4:4439648-4439667 Msa0831460:CDS 30.0%
! GGTTTTCAATGGAACTTTTA+TGG - chr5_4:4439684-4439703 Msa0831460:CDS 30.0%
! AATGGAACTTTTATGGTTAC+TGG - chr5_4:4439691-4439710 Msa0831460:CDS 30.0%
CTCCTCTTAACAAGTATAAT+AGG - chr5_4:4439830-4439849 Msa0831460:intron 30.0%
! TCCCTATTATACTTGTTAAG+AGG + chr5_4:4439835-4439854 None:intergenic 30.0%
TCATGGATCATTCAAGAAAA+GGG + chr5_4:4439900-4439919 None:intergenic 30.0%
AATATATGGAAGTTTCACCT+TGG + chr5_4:4439931-4439950 None:intergenic 30.0%
ATTCCGATTCAGTCAAAATA+GGG + chr5_4:4441010-4441029 None:intergenic 30.0%
AATTCCGATTCAGTCAAAAT+AGG + chr5_4:4441009-4441028 None:intergenic 30.0%
!!! ATTCCGAGTTTTAAAATAGG+GGG + chr5_4:4440036-4440055 None:intergenic 30.0%
TCCGAAAAACATTAAAATGG+GGG + chr5_4:4440064-4440083 None:intergenic 30.0%
AATAAGATAATGTGGTAGAG+GGG + chr5_4:4440094-4440113 None:intergenic 30.0%
AGGTGGATAATAAGATAATG+TGG + chr5_4:4440837-4440856 None:intergenic 30.0%
AGGTGGATAATAAGATAATG+TGG - chr5_4:4440837-4440856 Msa0831460:intron 30.0%
TGGATAATAAGATAATGTGG+TGG - chr5_4:4440840-4440859 Msa0831460:intron 30.0%
ATAATAAGATAATGTGGTGG+AGG - chr5_4:4440843-4440862 Msa0831460:intron 30.0%
! TAATAAGATAATGTGGTGGA+GGG - chr5_4:4440844-4440863 Msa0831460:intron 30.0%
TCCGAAAAACATTAAATTGG+GGG - chr5_4:4440875-4440894 Msa0831460:intron 30.0%
!!! TTCTGAGTTTTAAAATAGGG+GGG - chr5_4:4440922-4440941 Msa0831460:intron 30.0%
TCCGAAAAACATTAAATTGG+GGG - chr5_4:4440875-4440894 Msa0831460:intron 30.0%
!!! TTCCGAGTTTTAAAATAAGG+GGG - chr5_4:4440982-4441001 Msa0831460:CDS 30.0%
AATTCCGATTCAGTCAAAAT+AGG - chr5_4:4441009-4441028 Msa0831460:CDS 30.0%
ATTCCGATTCAGTCAAAATA+GGG - chr5_4:4441010-4441029 Msa0831460:CDS 30.0%
AACAGTATTAACTCTTGTTG+TGG - chr5_4:4441087-4441106 Msa0831460:CDS 30.0%
! AAAGGAAGTTTTTCATTGAG+AGG - chr5_4:4441255-4441274 Msa0831460:intron 30.0%
! AAGGAAGTTTTTCATTGAGA+GGG - chr5_4:4441256-4441275 Msa0831460:intron 30.0%
ATGCAATTCAATTTGAGAGG+GGG + chr5_4:4437606-4437625 None:intergenic 35.0%
GTAAGGTGTAATAAGAGGAA+TGG + chr5_4:4437709-4437728 None:intergenic 35.0%
TTGAAATTGCCCATCTTGTA+AGG + chr5_4:4437726-4437745 None:intergenic 35.0%
GCAATTTCAATCTCTCTCAT+AGG - chr5_4:4437736-4437755 Msa0831460:three_prime_UTR 35.0%
GAGGTTTAATTAGCAAGACA+AGG + chr5_4:4437832-4437851 None:intergenic 35.0%
! AAAACAACTCTGAAAATGGG+AGG + chr5_4:4437851-4437870 None:intergenic 35.0%
! TCCCATTTTCAGAGTTGTTT+TGG - chr5_4:4437850-4437869 Msa0831460:three_prime_UTR 35.0%
! GCCAAAACAACTCTGAAAAT+GGG + chr5_4:4437854-4437873 None:intergenic 35.0%
! TGCCAAAACAACTCTGAAAA+TGG + chr5_4:4437855-4437874 None:intergenic 35.0%
CTACATTCTTCTGTCAGATT+TGG - chr5_4:4438086-4438105 Msa0831460:intron 35.0%
! TCGCAACTTTTGCAAACTTA+GGG + chr5_4:4438412-4438431 None:intergenic 35.0%
! ATCGCAACTTTTGCAAACTT+AGG + chr5_4:4438411-4438430 None:intergenic 35.0%
! GTTTGCAAAAGTTGCGATTT+TGG - chr5_4:4438178-4438197 Msa0831460:intron 35.0%
!! TCAGTAATTTTTGGACGAAG+GGG + chr5_4:4438234-4438253 None:intergenic 35.0%
!! CTCAGTAATTTTTGGACGAA+GGG + chr5_4:4438235-4438254 None:intergenic 35.0%
!! TCTCAGTAATTTTTGGACGA+AGG + chr5_4:4438236-4438255 None:intergenic 35.0%
GTCCAAAAATTACTGAGAAG+AGG - chr5_4:4438238-4438257 Msa0831460:intron 35.0%
!!! TGCAATTATGCCCCTTTTTT+GGG + chr5_4:4438272-4438291 None:intergenic 35.0%
!!! TTGCAATTATGCCCCTTTTT+TGG + chr5_4:4438273-4438292 None:intergenic 35.0%
! CTTTTGACCCTCTAACATAA+AGG + chr5_4:4438332-4438351 None:intergenic 35.0%
GAGCATATTTCCCTAAACAT+AGG - chr5_4:4438351-4438370 Msa0831460:intron 35.0%
GCATATTTCCCTAAACATAG+GGG - chr5_4:4438353-4438372 Msa0831460:intron 35.0%
CATATTTCCCTAAACATAGG+GGG - chr5_4:4438354-4438373 Msa0831460:intron 35.0%
! GTTTGCAAAAGTTGCGATTT+TGG + chr5_4:4438178-4438197 None:intergenic 35.0%
! ATCGCAACTTTTGCAAACTT+AGG - chr5_4:4438411-4438430 Msa0831460:intron 35.0%
! TCGCAACTTTTGCAAACTTA+GGG - chr5_4:4438412-4438431 Msa0831460:intron 35.0%
CATTGGTATTGTAAAGTGAC+AGG + chr5_4:4438620-4438639 None:intergenic 35.0%
! CCCAAATTGTATGACGTTTT+GGG + chr5_4:4438814-4438833 None:intergenic 35.0%
CCCAAAACGTCATACAATTT+GGG - chr5_4:4438811-4438830 Msa0831460:intron 35.0%
! TCCCAAATTGTATGACGTTT+TGG + chr5_4:4438815-4438834 None:intergenic 35.0%
AAACGTCATACAATTTGGGA+CGG - chr5_4:4438815-4438834 Msa0831460:intron 35.0%
CATTTGGTTGACAAACTGTA+TGG + chr5_4:4438933-4438952 None:intergenic 35.0%
CATACAGTTTGTCAACCAAA+TGG - chr5_4:4438931-4438950 Msa0831460:intron 35.0%
AAACTACTCACACCACAAAT+TGG - chr5_4:4438979-4438998 Msa0831460:intron 35.0%
AACGACAGAACAGATGAATA+TGG - chr5_4:4439397-4439416 Msa0831460:CDS 35.0%
GAAGCTATTGCAAATGAGAT+AGG - chr5_4:4439463-4439482 Msa0831460:CDS 35.0%
CCATATAAAGTCCCAATTCT+TGG + chr5_4:4439555-4439574 None:intergenic 35.0%
CCAAGAATTGGGACTTTATA+TGG - chr5_4:4439552-4439571 Msa0831460:CDS 35.0%
CCATTGAAAACCTTTCTCAT+TGG + chr5_4:4439676-4439695 None:intergenic 35.0%
! CCAATGAGAAAGGTTTTCAA+TGG - chr5_4:4439673-4439692 Msa0831460:CDS 35.0%
GCAAATCTCTTTGGTAAATC+TGG + chr5_4:4439802-4439821 None:intergenic 35.0%
GCATTAAGTGCAAATCTCTT+TGG + chr5_4:4439811-4439830 None:intergenic 35.0%
TACACTTCTGATCCAATTCT+TGG - chr5_4:4439862-4439881 Msa0831460:intron 35.0%
TAGTCGGTATAACCAAGAAT+TGG + chr5_4:4439877-4439896 None:intergenic 35.0%
TCATTCAAGAAAAGGGTAGT+CGG + chr5_4:4439893-4439912 None:intergenic 35.0%
CTCATGGATCATTCAAGAAA+AGG + chr5_4:4439901-4439920 None:intergenic 35.0%
! CTTTTCTTGAATGATCCATG+AGG - chr5_4:4439899-4439918 Msa0831460:intron 35.0%
GACTCACCTTGGATAATATA+TGG + chr5_4:4439945-4439964 None:intergenic 35.0%
TTCCGATTCAGTCAAAATAG+GGG + chr5_4:4441011-4441030 None:intergenic 35.0%
!!! TTCCGAGTTTTAAAATAGGG+GGG + chr5_4:4440035-4440054 None:intergenic 35.0%
CCGAAAAACATTAAAATGGG+GGG + chr5_4:4440063-4440082 None:intergenic 35.0%
!! CCCCCCATTTTAATGTTTTT+CGG - chr5_4:4440060-4440079 Msa0831460:CDS 35.0%
ATAAGATAATGTGGTAGAGG+GGG + chr5_4:4440093-4440112 None:intergenic 35.0%
! AATAAGATAATGTGGTGGAG+GGG - chr5_4:4440845-4440864 Msa0831460:intron 35.0%
! CCCCCCAATTTAATGTTTTT+CGG + chr5_4:4440879-4440898 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG - chr5_4:4440876-4440895 Msa0831460:intron 35.0%
CGAAAAACATTAAATTGGGG+GGG - chr5_4:4440877-4440896 Msa0831460:intron 35.0%
GAAAAACATTAAATTGGGGG+GGG - chr5_4:4440878-4440897 Msa0831460:intron 35.0%
AAAAACATTAAATTGGGGGG+GGG - chr5_4:4440879-4440898 Msa0831460:intron 35.0%
!!! TCTGAGTTTTAAAATAGGGG+GGG - chr5_4:4440923-4440942 Msa0831460:intron 35.0%
! CCCCCCAATTTAATGTTTTT+CGG + chr5_4:4440879-4440898 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG - chr5_4:4440876-4440895 Msa0831460:intron 35.0%
CGAAAAACATTAAATTGGGG+GGG - chr5_4:4440877-4440896 Msa0831460:intron 35.0%
!!! TCCGAGTTTTAAAATAAGGG+GGG - chr5_4:4440983-4441002 Msa0831460:CDS 35.0%
!!! ACCCCCCTTATTTTAAAACT+CGG + chr5_4:4440987-4441006 None:intergenic 35.0%
TTCCGATTCAGTCAAAATAG+GGG - chr5_4:4441011-4441030 Msa0831460:CDS 35.0%
GGTCATGTTAAACAATATCC+CGG - chr5_4:4441210-4441229 Msa0831460:CDS 35.0%
!!! CCTTTTAAGGCTTCCTTAAT+CGG + chr5_4:4441240-4441259 None:intergenic 35.0%
! AGGAAGTTTTTCATTGAGAG+GGG - chr5_4:4441257-4441276 Msa0831460:intron 35.0%
ACCAATGAAAAACGCTCTTT+AGG - chr5_4:4441341-4441360 Msa0831460:intron 35.0%
! GAGTATTTTCGTCATTACGA+AGG + chr5_4:4441389-4441408 None:intergenic 35.0%
!! AATTTGAGAGGGGGTTGATA+GGG + chr5_4:4437597-4437616 None:intergenic 40.0%
GATAAGAAGACCACCTTTAG+AGG + chr5_4:4437948-4437967 None:intergenic 40.0%
CTCTTTAGTCCATATACCTG+GGG + chr5_4:4438017-4438036 None:intergenic 40.0%
GCTCTTTAGTCCATATACCT+GGG + chr5_4:4438018-4438037 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+TGG + chr5_4:4438019-4438038 None:intergenic 40.0%
! ATGGACTAAAGAGCAAGTTG+AGG - chr5_4:4438024-4438043 Msa0831460:intron 40.0%
GCATGAACAGCATCTACAAT+GGG + chr5_4:4438058-4438077 None:intergenic 40.0%
ACAGAAGAATGTAGCACCTT+TGG + chr5_4:4438080-4438099 None:intergenic 40.0%
TTCTGTCAGATTTGGCATGT+TGG - chr5_4:4438094-4438113 Msa0831460:intron 40.0%
AAACTTAGGGGGCAAAAAGT+GGG + chr5_4:4438425-4438444 None:intergenic 40.0%
! GCAACTTTTGCAAACTTAGG+GGG + chr5_4:4438414-4438433 None:intergenic 40.0%
! CGCAACTTTTGCAAACTTAG+GGG + chr5_4:4438413-4438432 None:intergenic 40.0%
!! CAGTAATTTTTGGACGAAGG+GGG + chr5_4:4438233-4438252 None:intergenic 40.0%
! GGCCTCTTCTCAGTAATTTT+TGG + chr5_4:4438243-4438262 None:intergenic 40.0%
TTAGTGACCCCCTATGTTTA+GGG + chr5_4:4438364-4438383 None:intergenic 40.0%
ATTAGTGACCCCCTATGTTT+AGG + chr5_4:4438365-4438384 None:intergenic 40.0%
! CGCAACTTTTGCAAACTTAG+GGG - chr5_4:4438413-4438432 Msa0831460:intron 40.0%
! GCAACTTTTGCAAACTTAGG+GGG - chr5_4:4438414-4438433 Msa0831460:intron 40.0%
AAACTTAGGGGGCAAAAAGT+GGG - chr5_4:4438425-4438444 Msa0831460:intron 40.0%
GACATACAATTTGGGAAGGA+TGG + chr5_4:4438565-4438584 None:intergenic 40.0%
AAGCGACATACAATTTGGGA+AGG + chr5_4:4438569-4438588 None:intergenic 40.0%
! TCCCAAATTGTATGTCGCTT+TGG - chr5_4:4438569-4438588 Msa0831460:intron 40.0%
CCCAAAGCGACATACAATTT+GGG + chr5_4:4438573-4438592 None:intergenic 40.0%
!! CCCAAATTGTATGTCGCTTT+GGG - chr5_4:4438570-4438589 Msa0831460:intron 40.0%
TCCCAAAGCGACATACAATT+TGG + chr5_4:4438574-4438593 None:intergenic 40.0%
GCCCAAAACGTCATACAATT+TGG - chr5_4:4438810-4438829 Msa0831460:intron 40.0%
GCAAGAAATGCTATTGAAGC+TGG - chr5_4:4439093-4439112 Msa0831460:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG - chr5_4:4439331-4439350 Msa0831460:CDS 40.0%
GACAGAACAGATGAATATGG+TGG - chr5_4:4439400-4439419 Msa0831460:CDS 40.0%
AGACTCAAATCCCCAAGAAT+TGG - chr5_4:4439540-4439559 Msa0831460:CDS 40.0%
GACTCAAATCCCCAAGAATT+GGG - chr5_4:4439541-4439560 Msa0831460:CDS 40.0%
! GGAACTTTTATGGTTACTGG+AGG - chr5_4:4439694-4439713 Msa0831460:CDS 40.0%
AGGGCAGATCTTATTGCTTA+TGG - chr5_4:4439757-4439776 Msa0831460:CDS 40.0%
TCCGATTCAGTCAAAATAGG+GGG + chr5_4:4441012-4441031 None:intergenic 40.0%
!!! ACCCCCCCTATTTTAAAACT+CGG - chr5_4:4440030-4440049 Msa0831460:CDS 40.0%
!!! TCCGAGTTTTAAAATAGGGG+GGG + chr5_4:4440034-4440053 None:intergenic 40.0%
! ATAAGATAATGTGGTGGAGG+GGG - chr5_4:4440846-4440865 Msa0831460:intron 40.0%
AAAACATTAAATTGGGGGGG+GGG - chr5_4:4440880-4440899 Msa0831460:intron 40.0%
TCCGATTCAGTCAAAATAGG+GGG - chr5_4:4441012-4441031 Msa0831460:CDS 40.0%
! TACTGTTGACTGTTGAGACA+TGG + chr5_4:4441074-4441093 None:intergenic 40.0%
ACAGGACACAGATCAATTGA+TGG - chr5_4:4441175-4441194 Msa0831460:CDS 40.0%
CCGATTAAGGAAGCCTTAAA+AGG - chr5_4:4441237-4441256 Msa0831460:intron 40.0%
! AAGTTTTTCATTGAGAGGGG+TGG - chr5_4:4441260-4441279 Msa0831460:intron 40.0%
!!! GCCTAAAGAGCGTTTTTCAT+TGG + chr5_4:4441345-4441364 None:intergenic 40.0%
! AGGCATTAATTGTTGCTTCC+AGG - chr5_4:4441361-4441380 Msa0831460:CDS 40.0%
! CAATTTGAGAGGGGGTTGAT+AGG + chr5_4:4437598-4437617 None:intergenic 45.0%
GAGTAATAGAGGATGGCATG+AGG + chr5_4:4437917-4437936 None:intergenic 45.0%
! CCTCTGAGAGTAATAGAGGA+TGG + chr5_4:4437924-4437943 None:intergenic 45.0%
CCATCCTCTATTACTCTCAG+AGG - chr5_4:4437921-4437940 Msa0831460:intron 45.0%
! AGGACCTCTGAGAGTAATAG+AGG + chr5_4:4437928-4437947 None:intergenic 45.0%
TACTCTCAGAGGTCCTCTAA+AGG - chr5_4:4437932-4437951 Msa0831460:intron 45.0%
CTTCTTATCGCTGAAGCTAC+CGG - chr5_4:4437959-4437978 Msa0831460:intron 45.0%
TTGAGCGGTATCAGATACAC+CGG + chr5_4:4437981-4438000 None:intergenic 45.0%
! CTAAAGAGCAAGTTGAGGCA+TGG - chr5_4:4438029-4438048 Msa0831460:intron 45.0%
GGCATGAACAGCATCTACAA+TGG + chr5_4:4438059-4438078 None:intergenic 45.0%
GTAGATGCTGTTCATGCCAA+AGG - chr5_4:4438061-4438080 Msa0831460:intron 45.0%
CAAACTTAGGGGGCAAAAAG+TGG + chr5_4:4438424-4438443 None:intergenic 45.0%
CAAACTTAGGGGGCAAAAAG+TGG - chr5_4:4438424-4438443 Msa0831460:intron 45.0%
! GTCATACAATTTGGGACGGA+GGG - chr5_4:4438819-4438838 Msa0831460:intron 45.0%
! GATATTGGTGCTTGCCCATT+TGG + chr5_4:4438949-4438968 None:intergenic 45.0%
CTACTCACACCACAAATTGG+AGG - chr5_4:4438982-4439001 Msa0831460:intron 45.0%
ACACCACAAATTGGAGGTGA+TGG - chr5_4:4438988-4439007 Msa0831460:intron 45.0%
GTACCATCACCTCCAATTTG+TGG + chr5_4:4438994-4439013 None:intergenic 45.0%
TCTTCTGTTCTTAGCCTCCT+TGG + chr5_4:4439039-4439058 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG - chr5_4:4439340-4439359 Msa0831460:CDS 45.0%
GAGATAGGTGCAGAAAGAGT+TGG - chr5_4:4439478-4439497 Msa0831460:CDS 45.0%
! TCATATGGTGGAGCCAAGAA+TGG - chr5_4:4439609-4439628 Msa0831460:CDS 45.0%
TAGCTTGGCACCAATGAGAA+AGG - chr5_4:4439663-4439682 Msa0831460:CDS 45.0%
GGAGGCTATGAAAGACAAGA+TGG - chr5_4:4439712-4439731 Msa0831460:CDS 45.0%
GATTCAGTCAAAATAGGGGG+GGG + chr5_4:4441015-4441034 None:intergenic 45.0%
CGATTCAGTCAAAATAGGGG+GGG + chr5_4:4441014-4441033 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG + chr5_4:4441013-4441032 None:intergenic 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG - chr5_4:4440001-4440020 Msa0831460:CDS 45.0%
AAACATTAAATTGGGGGGGG+GGG - chr5_4:4440881-4440900 Msa0831460:intron 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG + chr5_4:4440001-4440020 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG - chr5_4:4441013-4441032 Msa0831460:CDS 45.0%
CGATTCAGTCAAAATAGGGG+GGG - chr5_4:4441014-4441033 Msa0831460:CDS 45.0%
! ATATCCCGGAACACCGATTA+AGG - chr5_4:4441224-4441243 Msa0831460:CDS 45.0%
TAGAGGATGGCATGAGGTTG+TGG + chr5_4:4437911-4437930 None:intergenic 50.0%
! TCTCAGAGGTCCTCTAAAGG+TGG - chr5_4:4437935-4437954 Msa0831460:intron 50.0%
GGTGTATCTGATACCGCTCA+AGG - chr5_4:4437980-4437999 Msa0831460:intron 50.0%
GGTGTCTGGATATCCTTGAG+CGG + chr5_4:4437996-4438015 None:intergenic 50.0%
ATCCAGACACCCCAGGTATA+TGG - chr5_4:4438005-4438024 Msa0831460:intron 50.0%
AGGCCACGTGTCCCAAAAAA+GGG - chr5_4:4438258-4438277 Msa0831460:intron 50.0%
! CGTCATACAATTTGGGACGG+AGG - chr5_4:4438818-4438837 Msa0831460:intron 50.0%
TGCCACAATTCACACCACCA+AGG - chr5_4:4439019-4439038 Msa0831460:intron 50.0%
!! CTCCTTGGTGGTGTGAATTG+TGG + chr5_4:4439024-4439043 None:intergenic 50.0%
CACAATTCACACCACCAAGG+AGG - chr5_4:4439022-4439041 Msa0831460:intron 50.0%
TCTGTTCTTAGCCTCCTTGG+TGG + chr5_4:4439036-4439055 None:intergenic 50.0%
GATCCATGAGGTAGCATCCA+AGG - chr5_4:4439911-4439930 Msa0831460:intron 50.0%
TCACCTTGGATGCTACCTCA+TGG + chr5_4:4439917-4439936 None:intergenic 50.0%
AACATTAAATTGGGGGGGGG+GGG - chr5_4:4440882-4440901 Msa0831460:intron 50.0%
! GCTTCCTTAATCGGTGTTCC+GGG + chr5_4:4441231-4441250 None:intergenic 50.0%
! GGCTTCCTTAATCGGTGTTC+CGG + chr5_4:4441232-4441251 None:intergenic 50.0%
!! TTCGTCATTACGAAGGTGCC+TGG + chr5_4:4441382-4441401 None:intergenic 50.0%
CAAGGATATCCAGACACCCC+AGG - chr5_4:4437998-4438017 Msa0831460:intron 55.0%
! GTCCATATACCTGGGGTGTC+TGG + chr5_4:4438010-4438029 None:intergenic 55.0%
GAGGCCACGTGTCCCAAAAA+AGG - chr5_4:4438257-4438276 Msa0831460:intron 55.0%
GGCCACGTGTCCCAAAAAAG+GGG - chr5_4:4438259-4438278 Msa0831460:intron 55.0%
!!! TGCCCCTTTTTTGGGACACG+TGG + chr5_4:4438264-4438283 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG + chr5_4:4439351-4439370 None:intergenic 55.0%
ACATTAAATTGGGGGGGGGG+GGG - chr5_4:4440883-4440902 Msa0831460:intron 55.0%
CATTAAATTGGGGGGGGGGG+GGG - chr5_4:4440884-4440903 Msa0831460:intron 60.0%
ATTAAATTGGGGGGGGGGGG+GGG - chr5_4:4440885-4440904 Msa0831460:intron 60.0%
TTAAATTGGGGGGGGGGGGG+GGG - chr5_4:4440886-4440905 Msa0831460:intron 65.0%
TAAATTGGGGGGGGGGGGGG+GGG - chr5_4:4440887-4440906 Msa0831460:intron 70.0%
AAATTGGGGGGGGGGGGGGG+GGG - chr5_4:4440888-4440907 Msa0831460:intron 75.0%
! AATTGGGGGGGGGGGGGGGG+GGG - chr5_4:4440889-4440908 Msa0831460:intron 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG - chr5_4:4440890-4440909 Msa0831460:intron 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr5_4:4440891-4440910 Msa0831460:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr5_4:4440892-4440911 Msa0831460:intron 95.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4437569 4441541 4437569 ID=Msa0831460;Name=Msa0831460
chr5_4 mRNA 4437569 4441541 4437569 ID=Msa0831460-mRNA-1;Parent=Msa0831460;Name=Msa0831460-mRNA-1;_AED=0.41;_eAED=0.41;_QI=112|1|1|1|0.75|0.6|5|408|369
chr5_4 exon 4437569 4437931 4437569 ID=Msa0831460-mRNA-1:exon:1841;Parent=Msa0831460-mRNA-1
chr5_4 exon 4439153 4439781 4439153 ID=Msa0831460-mRNA-1:exon:1840;Parent=Msa0831460-mRNA-1
chr5_4 exon 4439996 4440172 4439996 ID=Msa0831460-mRNA-1:exon:1839;Parent=Msa0831460-mRNA-1
chr5_4 exon 4440977 4441248 4440977 ID=Msa0831460-mRNA-1:exon:1838;Parent=Msa0831460-mRNA-1
chr5_4 exon 4441353 4441541 4441353 ID=Msa0831460-mRNA-1:exon:1837;Parent=Msa0831460-mRNA-1
chr5_4 five_prime_UTR 4441430 4441541 4441430 ID=Msa0831460-mRNA-1:five_prime_utr;Parent=Msa0831460-mRNA-1
chr5_4 CDS 4441353 4441429 4441353 ID=Msa0831460-mRNA-1:cds;Parent=Msa0831460-mRNA-1
chr5_4 CDS 4440977 4441248 4440977 ID=Msa0831460-mRNA-1:cds;Parent=Msa0831460-mRNA-1
chr5_4 CDS 4439996 4440172 4439996 ID=Msa0831460-mRNA-1:cds;Parent=Msa0831460-mRNA-1
chr5_4 CDS 4439198 4439781 4439198 ID=Msa0831460-mRNA-1:cds;Parent=Msa0831460-mRNA-1
chr5_4 three_prime_UTR 4439153 4439197 4439153 ID=Msa0831460-mRNA-1:three_prime_utr;Parent=Msa0831460-mRNA-1
chr5_4 three_prime_UTR 4437569 4437931 4437569 ID=Msa0831460-mRNA-1:three_prime_utr;Parent=Msa0831460-mRNA-1
Gene Sequence

>Msa0831460

ATGGAAGCTGCTAAAACTGCTGATCCCATTCCTCTTATTACACCTTACAAGATGGGCAATTTCAATCTCTCTCATAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCATATGGCAACGTTCCACAACCTCATGCCATCCTCTATTACTCTCAGAGGTCCTCTAAAGGTGGTCTTCTTATCGCTGAAGCTACCGGTGTATCTGATACCGCTCAAGGATATCCAGACACCCCAGGTATATGGACTAAAGAGCAAGTTGAGGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTGCTACATTCTTCTGTCAGATTTGGCATGTTGGAAGAGTTTCTAATTCTATTTGTCAACCAAATGGGCAAGCACCAATATCTTCAACAGACAAACTACTCACACCACAAATTGGAGGTGATGGTACTGAAATGCCACAATTCACACCACCAAGGAGGCTAAGAACAGAAGAAATTCCTAATATTGTCAATGGCTTTAAACTTGCTGCAAGAAATGCTATTGAAGCTGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGCGAACGACAGAACAGATGAATATGGTGGAACCCTTGAAAATCGTTGTAGATTTGTTTTGGAAATTGTTGAAGCTATTGCAAATGAGATAGGTGCAGAAAGAGTTGGAATAAAATTATCACCTTTTGAAAAATTTGGAGATTGTGGAGACTCAAATCCCCAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCATATGGTGGAGCCAAGAATGGAAATTGTTGATGAAAAAACTGAATGTCATTATAGCTTGGCACCAATGAGAAAGGTTTTCAATGGAACTTTTATGGTTACTGGAGGCTATGAAAGACAAGATGGAATCAATGCTATAACTGAAAATAGGGCAGATCTTATTGCTTATGGTCGTTTGTTCATATCAAATCCAGATTTACCAAAGAGATTTGCACTTAATGCTCCTCTTAACAAGTATAATAGGGAGACATTCTACACTTCTGATCCAATTCTTGGTTATACCGACTACCCTTTTCTTGAATGA

Protein sequence

>Msa0831460

MEAAKTADPIPLITPYKMGNFNLSHRVVLAPLTRIRSYGNVPQPHAILYYSQRSSKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGATFFCQIWHVGRVSNSICQPNGQAPISSTDKLLTPQIGGDGTEMPQFTPPRRLRTEEIPNIVNGFKLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKANDRTDEYGGTLENRCRFVLEIVEAIANEIGAERVGIKLSPFEKFGDCGDSNPQELGLYMVNALNKYGILYCHMVEPRMEIVDEKTECHYSLAPMRKVFNGTFMVTGGYERQDGINAITENRADLIAYGRLFISNPDLPKRFALNAPLNKYNRETFYTSDPILGYTDYPFLE*