AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029030 MtrunA17_Chr7g0249461 97.849 186 4 0 1 186 1 186 5.18e-131 365
Msa1029030 MtrunA17_Chr5g0404831 37.736 106 62 2 79 181 8 112 2.11e-18 77.0
Msa1029030 MtrunA17_Chr1g0155721 40.000 105 59 2 79 180 6 109 3.86e-17 73.6
Msa1029030 MtrunA17_Chr3g0142051 42.683 82 46 1 99 180 29 109 5.99e-16 70.5
Msa1029030 MtrunA17_Chr7g0216481 39.744 78 46 1 99 176 49 125 2.76e-15 69.3
Msa1029030 MtrunA17_Chr8g0334481 36.905 84 51 2 94 176 43 125 3.57e-13 63.5
Msa1029030 MtrunA17_Chr3g0125821 30.323 155 95 5 25 171 10 159 7.70e-13 63.5
Msa1029030 MtrunA17_Chr7g0245141 41.096 73 42 1 99 171 47 118 7.36e-12 60.1
Msa1029030 MtrunA17_Chr6g0488561 33.333 72 47 1 89 160 86 156 2.18e-11 60.5
Msa1029030 MtrunA17_Chr8g0393201 43.836 73 40 1 99 171 250 321 3.72e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029030 AT3G02730.1 64.130 184 55 3 4 186 2 175 5.36e-73 218
Msa1029030 AT5G16400.1 81.679 131 22 1 56 186 57 185 6.39e-73 218
Msa1029030 AT3G51030.1 44.737 76 41 1 101 176 31 105 8.41e-17 72.8
Msa1029030 AT5G42980.1 37.975 79 48 1 99 177 28 105 4.25e-16 71.2
Msa1029030 AT5G39950.1 38.202 89 52 2 98 185 47 133 7.39e-16 70.9
Msa1029030 AT1G45145.1 35.897 78 49 1 99 176 28 104 1.74e-15 69.7
Msa1029030 AT1G19730.1 34.314 102 62 4 79 176 6 106 3.44e-15 68.9
Msa1029030 AT1G59730.1 31.250 128 80 3 60 184 6 128 7.92e-13 62.8
Msa1029030 AT4G26160.1 33.673 98 61 3 87 181 102 198 2.07e-12 63.5
Msa1029030 AT4G29670.2 32.432 74 49 1 87 160 112 184 2.07e-11 61.2
Msa1029030 AT4G29670.1 32.432 74 49 1 87 160 112 184 2.71e-11 60.8
Msa1029030 AT1G69880.1 37.209 86 51 2 93 176 52 136 3.09e-11 59.3
Msa1029030 AT3G08710.2 35.897 78 49 1 99 176 46 122 4.26e-11 58.5
Msa1029030 AT3G08710.3 35.897 78 49 1 99 176 46 122 4.26e-11 58.5
Msa1029030 AT3G08710.1 35.897 78 49 1 99 176 46 122 4.26e-11 58.5

Find 99 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTAATTCTTTGTATTT+TGG 0.153277 7_1:-62285785 None:intergenic
GCCATCCCAATGTGTATTTC+TGG 0.203008 7_1:+62286498 Msa1029030:three_prime_UTR
AGAATTAGCTGAGAAGTATT+TGG 0.241894 7_1:+62285796 Msa1029030:CDS
ATCTCTGCACCTCCCCTAAA+TGG 0.258474 7_1:+62283293 Msa1029030:CDS
CCTAATGTACATGGGTATTA+TGG 0.259369 7_1:+62286379 Msa1029030:three_prime_UTR
CACCTTAATTCCTAGCTCTT+TGG 0.269465 7_1:-62285956 None:intergenic
TAATCCATACCTTGTTATCT+TGG 0.303298 7_1:-62285847 None:intergenic
AACACTCTTCGAATTCAAAA+TGG 0.316540 7_1:-62283398 None:intergenic
TCATTAAGTGTACGGTGTTT+TGG 0.323608 7_1:-62286408 None:intergenic
TGGAGCTAAATATGATGATT+TGG 0.335332 7_1:+62286029 Msa1029030:CDS
ACGGTGGTGCCAATCCATTT+AGG 0.338069 7_1:-62283307 None:intergenic
GGCCAAAGAGCTAGGAATTA+AGG 0.347175 7_1:+62285954 Msa1029030:CDS
TTCTGTTATCAACTTGATCA+TGG 0.357807 7_1:+62286258 Msa1029030:three_prime_UTR
CGGTGGTGCCAATCCATTTA+GGG 0.370373 7_1:-62283306 None:intergenic
CCATAATACCCATGTACATT+AGG 0.379105 7_1:-62286379 None:intergenic
TGTTATTATGAGGGTGGAAT+TGG 0.379393 7_1:-62283121 None:intergenic
TGATCATGGGCTATCTATAA+AGG 0.388865 7_1:+62286272 Msa1029030:three_prime_UTR
TTGTCCAGCCGGAATGATCT+TGG 0.396843 7_1:-62286461 None:intergenic
TTGTTGCGGTTGTTATTATG+AGG 0.403026 7_1:-62283131 None:intergenic
TTGTCCTTGGAGTTTGTGTA+TGG 0.406207 7_1:-62283156 None:intergenic
AAGGTTGTAAAAGAAGTAAC+TGG 0.408021 7_1:+62286009 Msa1029030:CDS
AGAAAATGAAGTGGTGGAAG+AGG 0.408115 7_1:-62283371 None:intergenic
TGTCCAGCCGGAATGATCTT+GGG 0.431711 7_1:-62286460 None:intergenic
AATTCCTAGCTCTTTGGCCA+AGG 0.431968 7_1:-62285950 None:intergenic
TCTCGCACCCAAGATCATTC+CGG 0.433558 7_1:+62286453 Msa1029030:three_prime_UTR
GCATGTGGAGAGTGAAGAAT+TGG 0.443078 7_1:-62283252 None:intergenic
ATTGGTAAATTTGAATGAAA+CGG 0.444192 7_1:-62283103 None:intergenic
CAAGGGATACCTAATGTACA+TGG 0.446648 7_1:+62286370 Msa1029030:three_prime_UTR
TTCGTCCAGAAATACACATT+GGG 0.464676 7_1:-62286503 None:intergenic
ATCTATAAAGGTGGCTCAGA+TGG 0.465544 7_1:+62286284 Msa1029030:three_prime_UTR
GCATCCAATTATGTAAAAGA+AGG 0.469447 7_1:+62283023 Msa1029030:five_prime_UTR
GATGTGAAGGGGAAGAAGAG+TGG 0.476863 7_1:-62283202 None:intergenic
AAGTTAACAAGGATACGTTT+TGG 0.484803 7_1:+62283518 Msa1029030:CDS
ATTCCTAGCTCTTTGGCCAA+GGG 0.487064 7_1:-62285949 None:intergenic
TTTCAGTGTAAGATCAAGCT+TGG 0.488084 7_1:+62283456 Msa1029030:CDS
AGATTAAGAGCCATTGGTGT+TGG 0.490679 7_1:-62283274 None:intergenic
TCTGTTATCAACTTGATCAT+GGG 0.506215 7_1:+62286259 Msa1029030:three_prime_UTR
CAGCCCTTGGCCAAAGAGCT+AGG 0.508539 7_1:+62285946 Msa1029030:intron
GAGATATGCTCGTGTGGTCG+TGG 0.509917 7_1:-62283224 None:intergenic
ATGTGAAGGGGAAGAAGAGT+GGG 0.514314 7_1:-62283201 None:intergenic
AGATCAAGCTTGGAAACTAC+TGG 0.514531 7_1:+62283466 Msa1029030:CDS
TGTTGCGGTTGTTATTATGA+GGG 0.517176 7_1:-62283130 None:intergenic
GCTAGAACGAACAGTGTCAA+TGG 0.517649 7_1:-62286058 None:intergenic
AGTAACTTGTCCGACGGTCA+CGG 0.518466 7_1:-62283494 None:intergenic
TTTGGAGCTATCACTTTGCA+AGG 0.518801 7_1:-62285767 None:intergenic
TGCGGTTGTTATTATGAGGG+TGG 0.522948 7_1:-62283127 None:intergenic
ATTGATTATTCCCTAGCATA+GGG 0.526684 7_1:+62286215 Msa1029030:three_prime_UTR
GTCTCAAAAGCTTAAGCTTG+AGG 0.526728 7_1:+62283422 Msa1029030:CDS
TGCACCTCCCCTAAATGGAT+TGG 0.536322 7_1:+62283298 Msa1029030:CDS
GTGCAGAGATTAAGAGCCAT+TGG 0.539401 7_1:-62283280 None:intergenic
AGCTTAAGCTTGAGGAAGAG+TGG 0.542518 7_1:+62283430 Msa1029030:CDS
TCACCGGCGGCATTAACGAT+GGG 0.558656 7_1:-62283541 None:intergenic
TCTTCATCGAAGCCATCACT+TGG 0.560821 7_1:+62283343 Msa1029030:CDS
TCGTGTGGTCGTGGATGTGA+AGG 0.564599 7_1:-62283215 None:intergenic
ATCACCGGCGGCATTAACGA+TGG 0.564737 7_1:-62283542 None:intergenic
GCTTAAGCTTGAGGAAGAGT+GGG 0.566529 7_1:+62283431 Msa1029030:CDS
GCACCCAAGATCATTCCGGC+TGG 0.567036 7_1:+62286457 Msa1029030:three_prime_UTR
ACTTGTCCGACGGTCACGGT+GGG 0.567322 7_1:-62283490 None:intergenic
CATCCAATTATGTAAAAGAA+GGG 0.571110 7_1:+62283024 Msa1029030:five_prime_UTR
AATTGATTATTCCCTAGCAT+AGG 0.573536 7_1:+62286214 Msa1029030:three_prime_UTR
TGTATTTCTGGACGAAAACA+CGG 0.576437 7_1:+62286510 Msa1029030:three_prime_UTR
TGCATTAGAAATACTTACAG+AGG 0.576470 7_1:-62286133 None:intergenic
AAATTGAGTCAGTGCTGTCA+AGG 0.582443 7_1:+62286352 Msa1029030:three_prime_UTR
TCTCCACATGCCAACACCAA+TGG 0.584573 7_1:+62283264 Msa1029030:exon
TTTCGTCCAGAAATACACAT+TGG 0.587991 7_1:-62286504 None:intergenic
AACTTCAGTAACTTGTCCGA+CGG 0.588509 7_1:-62283500 None:intergenic
CACTTAATGACGTCTAGCAA+CGG 0.594924 7_1:+62286421 Msa1029030:three_prime_UTR
GAGCCATTGGTGTTGGCATG+TGG 0.594989 7_1:-62283267 None:intergenic
ACTGGCCCCACCGTGACCGT+CGG 0.596720 7_1:+62283484 Msa1029030:CDS
GCTAGACGTCATTAAGTGTA+CGG 0.597487 7_1:-62286416 None:intergenic
AATTGAGTCAGTGCTGTCAA+GGG 0.608737 7_1:+62286353 Msa1029030:three_prime_UTR
GGAAGAAGAAAATGAAGTGG+TGG 0.609950 7_1:-62283377 None:intergenic
TGCTCGACATGTACACCCAA+TGG 0.615709 7_1:+62283575 Msa1029030:CDS
TCCAGAAATACACATTGGGA+TGG 0.615749 7_1:-62286499 None:intergenic
CGTGTGGTCGTGGATGTGAA+GGG 0.616315 7_1:-62283214 None:intergenic
CTTGTCCGACGGTCACGGTG+GGG 0.620136 7_1:-62283489 None:intergenic
AATGGAAGAAGAAAATGAAG+TGG 0.620444 7_1:-62283380 None:intergenic
GTTTGTGTATGGTATTGTTG+CGG 0.624399 7_1:-62283145 None:intergenic
GGGAGTGATGAATGAAATGA+CGG 0.628268 7_1:-62283181 None:intergenic
GCATTAGAAATACTTACAGA+GGG 0.629622 7_1:-62286132 None:intergenic
GACTCTGAGATATGCTCGTG+TGG 0.629703 7_1:-62283230 None:intergenic
TAAAATTCTGAAAGACAACA+AGG 0.632667 7_1:+62285990 Msa1029030:CDS
GGTGGTGCCAATCCATTTAG+GGG 0.634407 7_1:-62283305 None:intergenic
GAAGAGGAAGAACCAAGTGA+TGG 0.636750 7_1:-62283355 None:intergenic
AATACCATACACAAACTCCA+AGG 0.650975 7_1:+62283152 Msa1029030:five_prime_UTR
GTGTGGTCGTGGATGTGAAG+GGG 0.656896 7_1:-62283213 None:intergenic
ATTCCGGCTGGACAAAACAA+AGG 0.663748 7_1:+62286469 Msa1029030:three_prime_UTR
ACAAGTTACTGAAGTTAACA+AGG 0.670493 7_1:+62283507 Msa1029030:CDS
CAAAGAGCTAGGAATTAAGG+TGG 0.670646 7_1:+62285957 Msa1029030:CDS
TGATTGCAACCAAGATAACA+AGG 0.674067 7_1:+62285838 Msa1029030:CDS
GGTGCCAATCCATTTAGGGG+AGG 0.674114 7_1:-62283302 None:intergenic
GGTGTACATGTCGAGCACGA+CGG 0.678425 7_1:-62283569 None:intergenic
AAGGGATACCTAATGTACAT+GGG 0.679919 7_1:+62286371 Msa1029030:three_prime_UTR
TGCAATTGTAAGCTGCTGAG+TGG 0.681997 7_1:+62286152 Msa1029030:three_prime_UTR
TCATGGGCTATCTATAAAGG+TGG 0.684533 7_1:+62286275 Msa1029030:three_prime_UTR
TACAGCTTACAACAACAACA+TGG 0.685248 7_1:-62286192 None:intergenic
TGAAGAAGTACTATCGAACA+CGG 0.719034 7_1:-62283326 None:intergenic
AAGCTGCTGAGTGGAAGATG+AGG 0.731291 7_1:+62286161 Msa1029030:three_prime_UTR
AGAAGTACTATCGAACACGG+TGG 0.828686 7_1:-62283323 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATAAATTAATAGAAAA+AGG - chr7_1:62283657-62283676 None:intergenic 10.0%
!!! TTTTTATTTTATTTTTGAGT+AGG - chr7_1:62285598-62285617 None:intergenic 10.0%
!!! ATTTTCCTAATTTATGATTA+TGG + chr7_1:62284401-62284420 Msa1029030:intron 15.0%
!! GCATTGTATATTAAAATATA+AGG - chr7_1:62284921-62284940 None:intergenic 15.0%
!!! ATTTCATTAGTTTTCTAAAA+AGG + chr7_1:62285409-62285428 Msa1029030:intron 15.0%
!!! TTTCATTAGTTTTCTAAAAA+GGG + chr7_1:62285410-62285429 Msa1029030:intron 15.0%
!!! ATAAAAAGGTTAATTGATTT+TGG + chr7_1:62285471-62285490 Msa1029030:intron 15.0%
!! TAAAATAAAAAATCAATCTC+TGG + chr7_1:62285607-62285626 Msa1029030:intron 15.0%
!! ATTGGTAAATTTGAATGAAA+CGG - chr7_1:62283106-62283125 None:intergenic 20.0%
!! ATGAAATAAGATATACCATT+GGG - chr7_1:62283593-62283612 None:intergenic 20.0%
!! AATGAAATAAGATATACCAT+TGG - chr7_1:62283594-62283613 None:intergenic 20.0%
!! AGCTTATTTAGACTTAATTT+AGG - chr7_1:62284137-62284156 None:intergenic 20.0%
!! ATACTTCTTAAAACATATAG+AGG - chr7_1:62284170-62284189 None:intergenic 20.0%
!!! ATGATTTGGTAAACTATAAT+TGG + chr7_1:62284211-62284230 Msa1029030:intron 20.0%
!! AAATGCCATAATCATAAATT+AGG - chr7_1:62284409-62284428 None:intergenic 20.0%
!! ATCATATCTTTACATAAGTA+AGG + chr7_1:62284640-62284659 Msa1029030:intron 20.0%
!! AACTTAATTAAAGACAAAGT+GGG + chr7_1:62284982-62285001 Msa1029030:intron 20.0%
!! CAATTAATCATCATACTTAT+CGG + chr7_1:62285116-62285135 Msa1029030:intron 20.0%
!!! GTGTTATTGACTTATTTTTT+AGG + chr7_1:62285191-62285210 Msa1029030:intron 20.0%
!! TAGAAAACTAATGAAATGAT+CGG - chr7_1:62285406-62285425 None:intergenic 20.0%
!!! TCTTTCAGAATTTTAAAAGT+GGG - chr7_1:62285985-62286004 None:intergenic 20.0%
! CATCCAATTATGTAAAAGAA+GGG + chr7_1:62283024-62283043 Msa1029030:five_prime_UTR 25.0%
!! ATTGTGTGTGATATTGTTTT+TGG - chr7_1:62283065-62283084 None:intergenic 25.0%
! ATGTCAATATTCTCTAAGTT+TGG - chr7_1:62283958-62283977 None:intergenic 25.0%
! AGAGAATATTGACATAAGTT+TGG + chr7_1:62283963-62283982 Msa1029030:intron 25.0%
!! CTTATCATCATAAACTGTTT+TGG - chr7_1:62284022-62284041 None:intergenic 25.0%
!!! TTAAAACATATAGAGGCATT+TGG - chr7_1:62284163-62284182 None:intergenic 25.0%
!! TTTTAGCAAGTAAGATGATT+TGG + chr7_1:62284197-62284216 Msa1029030:intron 25.0%
!! AAAATTTTGTGTGTGATATC+TGG - chr7_1:62284386-62284405 None:intergenic 25.0%
! TTATGAAGCACAATTGAAAA+CGG - chr7_1:62284514-62284533 None:intergenic 25.0%
!! TACATAACACCTAATCTTTT+AGG + chr7_1:62284804-62284823 Msa1029030:intron 25.0%
! GCTGTTAACTTTCTAATAAA+CGG + chr7_1:62284862-62284881 Msa1029030:intron 25.0%
! CTGTTAACTTTCTAATAAAC+GGG + chr7_1:62284863-62284882 Msa1029030:intron 25.0%
! GAACTTAATTAAAGACAAAG+TGG + chr7_1:62284981-62285000 Msa1029030:intron 25.0%
!!! TACTGAAGTACTTATTTTGT+AGG + chr7_1:62285018-62285037 Msa1029030:intron 25.0%
!!! TTGGAGCAATGATTATTTTA+AGG + chr7_1:62285637-62285656 Msa1029030:intron 25.0%
! TGCTAAATATAGTGTAGATT+TGG + chr7_1:62285702-62285721 Msa1029030:intron 25.0%
! TTCATGATAAATCATATCCA+AGG - chr7_1:62285732-62285751 None:intergenic 25.0%
!! TCAGCTAATTCTTTGTATTT+TGG - chr7_1:62285788-62285807 None:intergenic 25.0%
! ACTAAATAGTAGATAGTCTA+TGG + chr7_1:62285878-62285897 Msa1029030:intron 25.0%
! ACATAGTGTTTAATGGTTAT+TGG + chr7_1:62285923-62285942 Msa1029030:intron 25.0%
!!! GTCTTTCAGAATTTTAAAAG+TGG - chr7_1:62285986-62286005 None:intergenic 25.0%
!! TAAAATTCTGAAAGACAACA+AGG + chr7_1:62285990-62286009 Msa1029030:CDS 25.0%
GCATCCAATTATGTAAAAGA+AGG + chr7_1:62283023-62283042 Msa1029030:five_prime_UTR 30.0%
! TGACCCTTCTTTTACATAAT+TGG - chr7_1:62283030-62283049 None:intergenic 30.0%
AATGGAAGAAGAAAATGAAG+TGG - chr7_1:62283383-62283402 None:intergenic 30.0%
AACACTCTTCGAATTCAAAA+TGG - chr7_1:62283401-62283420 None:intergenic 30.0%
!! ATTTTGAATTCGAAGAGTGT+TGG + chr7_1:62283400-62283419 Msa1029030:CDS 30.0%
ACAAGTTACTGAAGTTAACA+AGG + chr7_1:62283507-62283526 Msa1029030:CDS 30.0%
! AAGTTAACAAGGATACGTTT+TGG + chr7_1:62283518-62283537 Msa1029030:CDS 30.0%
TAAGATGCTAATAGACTCTA+AGG + chr7_1:62283757-62283776 Msa1029030:intron 30.0%
GTTGAGTAAAACAGAAAACA+GGG - chr7_1:62284299-62284318 None:intergenic 30.0%
TATGAAGCACAATTGAAAAC+GGG - chr7_1:62284513-62284532 None:intergenic 30.0%
TTCATCGTATAATGTACTTC+AGG - chr7_1:62284693-62284712 None:intergenic 30.0%
TACATTATACGATGAAGAGT+GGG + chr7_1:62284697-62284716 Msa1029030:intron 30.0%
! AAAGGGTTTTCTCTAAACTA+AGG + chr7_1:62284720-62284739 Msa1029030:intron 30.0%
! AAGGGTTTTCTCTAAACTAA+GGG + chr7_1:62284721-62284740 Msa1029030:intron 30.0%
TAACAGTTGTGAAACAATCA+AGG + chr7_1:62284772-62284791 Msa1029030:intron 30.0%
AACAGTTGTGAAACAATCAA+GGG + chr7_1:62284773-62284792 Msa1029030:intron 30.0%
ATGGATATGCCTAAAAGATT+AGG - chr7_1:62284816-62284835 None:intergenic 30.0%
TGCAGTTATGATAAAATGCA+TGG - chr7_1:62284835-62284854 None:intergenic 30.0%
ATATACAATGCCTGAAATTG+AGG + chr7_1:62284930-62284949 Msa1029030:intron 30.0%
TTTGTAGGCTGAATATCAAA+AGG + chr7_1:62285033-62285052 Msa1029030:intron 30.0%
ACGAAACAAAGCTGATAAAA+AGG + chr7_1:62285457-62285476 Msa1029030:intron 30.0%
TAAAAAATCAATCTCTGGTG+TGG + chr7_1:62285612-62285631 Msa1029030:intron 30.0%
TGATTTATCATGAACTTTGC+AGG + chr7_1:62285738-62285757 Msa1029030:intron 30.0%
!! AGAATTAGCTGAGAAGTATT+TGG + chr7_1:62285796-62285815 Msa1029030:CDS 30.0%
! TAATCCATACCTTGTTATCT+TGG - chr7_1:62285850-62285869 None:intergenic 30.0%
TAACCATTAAACACTATGTC+AGG - chr7_1:62285922-62285941 None:intergenic 30.0%
AAGGTTGTAAAAGAAGTAAC+TGG + chr7_1:62286009-62286028 Msa1029030:CDS 30.0%
TGGAGCTAAATATGATGATT+TGG + chr7_1:62286029-62286048 Msa1029030:CDS 30.0%
GCATTAGAAATACTTACAGA+GGG - chr7_1:62286135-62286154 None:intergenic 30.0%
TGCATTAGAAATACTTACAG+AGG - chr7_1:62286136-62286155 None:intergenic 30.0%
AATTGATTATTCCCTAGCAT+AGG + chr7_1:62286214-62286233 Msa1029030:three_prime_UTR 30.0%
ATTGATTATTCCCTAGCATA+GGG + chr7_1:62286215-62286234 Msa1029030:three_prime_UTR 30.0%
TTCTGTTATCAACTTGATCA+TGG + chr7_1:62286258-62286277 Msa1029030:three_prime_UTR 30.0%
TCTGTTATCAACTTGATCAT+GGG + chr7_1:62286259-62286278 Msa1029030:three_prime_UTR 30.0%
TGTTATTATGAGGGTGGAAT+TGG - chr7_1:62283124-62283143 None:intergenic 35.0%
! TGTTGCGGTTGTTATTATGA+GGG - chr7_1:62283133-62283152 None:intergenic 35.0%
! TTGTTGCGGTTGTTATTATG+AGG - chr7_1:62283134-62283153 None:intergenic 35.0%
GTTTGTGTATGGTATTGTTG+CGG - chr7_1:62283148-62283167 None:intergenic 35.0%
AATACCATACACAAACTCCA+AGG + chr7_1:62283152-62283171 Msa1029030:five_prime_UTR 35.0%
!! TGAAGAAGTACTATCGAACA+CGG - chr7_1:62283329-62283348 None:intergenic 35.0%
TTTCAGTGTAAGATCAAGCT+TGG + chr7_1:62283456-62283475 Msa1029030:CDS 35.0%
TTTGTGTAAGAGAGTTTCGT+AGG + chr7_1:62283827-62283846 Msa1029030:intron 35.0%
TTGTGTAAGAGAGTTTCGTA+GGG + chr7_1:62283828-62283847 Msa1029030:intron 35.0%
AAGTTTGGTCGAATAGGTAT+CGG - chr7_1:62283943-62283962 None:intergenic 35.0%
TTCTCTAAGTTTGGTCGAAT+AGG - chr7_1:62283949-62283968 None:intergenic 35.0%
ACCAATCAATTAGAGAACGA+AGG + chr7_1:62283986-62284005 Msa1029030:intron 35.0%
ACCTTCGTTCTCTAATTGAT+TGG - chr7_1:62283990-62284009 None:intergenic 35.0%
! ACACTTCATAGAGTCTTGTA+AGG + chr7_1:62284091-62284110 Msa1029030:intron 35.0%
GGTTGAGTAAAACAGAAAAC+AGG - chr7_1:62284300-62284319 None:intergenic 35.0%
! CGTTACTAGTTACTTTCACT+TGG + chr7_1:62284328-62284347 Msa1029030:intron 35.0%
! GTTTTGTGTGACTTGATTGT+TGG + chr7_1:62284442-62284461 Msa1029030:intron 35.0%
ATGAAGCACAATTGAAAACG+GGG - chr7_1:62284512-62284531 None:intergenic 35.0%
GTGCTTCATAAAGTCTGTAT+AGG + chr7_1:62284523-62284542 Msa1029030:intron 35.0%
! ATGTTGTTTAGTGACACGTT+GGG - chr7_1:62284609-62284628 None:intergenic 35.0%
GTTCAAGACAAATCTCTTCA+AGG + chr7_1:62284662-62284681 Msa1029030:intron 35.0%
GTACATTATACGATGAAGAG+TGG + chr7_1:62284696-62284715 Msa1029030:intron 35.0%
! AGGGTTTTCTCTAAACTAAG+GGG + chr7_1:62284722-62284741 Msa1029030:intron 35.0%
CTCTAAACTAAGGGGTTTAT+TGG + chr7_1:62284730-62284749 Msa1029030:intron 35.0%
! CCTCTTTTTACCTCAATTTC+AGG - chr7_1:62284943-62284962 None:intergenic 35.0%
CCTGAAATTGAGGTAAAAAG+AGG + chr7_1:62284940-62284959 Msa1029030:intron 35.0%
GAAATTGAGGTAAAAAGAGG+AGG + chr7_1:62284943-62284962 Msa1029030:intron 35.0%
AAAAAGAGGAGGTAATTCAC+TGG + chr7_1:62284954-62284973 Msa1029030:intron 35.0%
! TTTGAAGCTTTCAACCAGAT+TGG - chr7_1:62285080-62285099 None:intergenic 35.0%
AAAGCTTCAAAGTTGGCATT+TGG + chr7_1:62285089-62285108 Msa1029030:intron 35.0%
ATGTACATGTAGCCAAATCA+GGG + chr7_1:62285219-62285238 Msa1029030:intron 35.0%
AAACTAATGAAATGATCGGC+TGG - chr7_1:62285402-62285421 None:intergenic 35.0%
AAGGGAGAAACAAGTTTCTT+TGG + chr7_1:62285428-62285447 Msa1029030:intron 35.0%
AGGGAGAAACAAGTTTCTTT+GGG + chr7_1:62285429-62285448 Msa1029030:intron 35.0%
GATTACAACACTCACACATT+TGG - chr7_1:62285554-62285573 None:intergenic 35.0%
! TGTGAGTGTTGTAATCTCTA+GGG + chr7_1:62285558-62285577 Msa1029030:intron 35.0%
CCTTTATGACATTGTTATCC+CGG + chr7_1:62285678-62285697 Msa1029030:intron 35.0%
TCTACACTATATTTAGCAGC+CGG - chr7_1:62285700-62285719 None:intergenic 35.0%
AGTGTAGATTTGGATAACCT+TGG + chr7_1:62285712-62285731 Msa1029030:intron 35.0%
TGATTGCAACCAAGATAACA+AGG + chr7_1:62285838-62285857 Msa1029030:CDS 35.0%
TACAGCTTACAACAACAACA+TGG - chr7_1:62286195-62286214 None:intergenic 35.0%
! TGATCATGGGCTATCTATAA+AGG + chr7_1:62286272-62286291 Msa1029030:three_prime_UTR 35.0%
AAGGGATACCTAATGTACAT+GGG + chr7_1:62286371-62286390 Msa1029030:three_prime_UTR 35.0%
CCATAATACCCATGTACATT+AGG - chr7_1:62286382-62286401 None:intergenic 35.0%
CCTAATGTACATGGGTATTA+TGG + chr7_1:62286379-62286398 Msa1029030:three_prime_UTR 35.0%
! TCATTAAGTGTACGGTGTTT+TGG - chr7_1:62286411-62286430 None:intergenic 35.0%
TTCGTCCAGAAATACACATT+GGG - chr7_1:62286506-62286525 None:intergenic 35.0%
TTTCGTCCAGAAATACACAT+TGG - chr7_1:62286507-62286526 None:intergenic 35.0%
!! TGTATTTCTGGACGAAAACA+CGG + chr7_1:62286510-62286529 Msa1029030:three_prime_UTR 35.0%
TTGTCCTTGGAGTTTGTGTA+TGG - chr7_1:62283159-62283178 None:intergenic 40.0%
!! TGAAATGACGGTTTTGTCCT+TGG - chr7_1:62283172-62283191 None:intergenic 40.0%
GGGAGTGATGAATGAAATGA+CGG - chr7_1:62283184-62283203 None:intergenic 40.0%
AGATTAAGAGCCATTGGTGT+TGG - chr7_1:62283277-62283296 None:intergenic 40.0%
! AGAAAATGAAGTGGTGGAAG+AGG - chr7_1:62283374-62283393 None:intergenic 40.0%
GGAAGAAGAAAATGAAGTGG+TGG - chr7_1:62283380-62283399 None:intergenic 40.0%
GTCTCAAAAGCTTAAGCTTG+AGG + chr7_1:62283422-62283441 Msa1029030:CDS 40.0%
AGATCAAGCTTGGAAACTAC+TGG + chr7_1:62283466-62283485 Msa1029030:CDS 40.0%
! AACTTCAGTAACTTGTCCGA+CGG - chr7_1:62283503-62283522 None:intergenic 40.0%
! AGCTCTAGCTGTATGAAACA+AGG - chr7_1:62283710-62283729 None:intergenic 40.0%
ATACAGCTAGAGCTAGCTAT+AGG + chr7_1:62283716-62283735 Msa1029030:intron 40.0%
AAGGTAGATTCGATATGCTG+AGG + chr7_1:62283776-62283795 Msa1029030:intron 40.0%
!! GGTATCGGTGTATCTTTATC+AGG - chr7_1:62283928-62283947 None:intergenic 40.0%
AATTAGAGAACGAAGGTCGA+AGG + chr7_1:62283993-62284012 Msa1029030:intron 40.0%
ATTGTGAGTGACAGACACTA+TGG + chr7_1:62284068-62284087 Msa1029030:intron 40.0%
! CTGTTTTACTCAACCATGCA+CGG + chr7_1:62284305-62284324 Msa1029030:intron 40.0%
GTCCATTGATCAGTACATCT+TGG + chr7_1:62284352-62284371 Msa1029030:intron 40.0%
! CACCAAGATGTACTGATCAA+TGG - chr7_1:62284357-62284376 None:intergenic 40.0%
! GATGTTGTTTAGTGACACGT+TGG - chr7_1:62284610-62284629 None:intergenic 40.0%
TATACGATGAAGAGTGGGAA+AGG + chr7_1:62284702-62284721 Msa1029030:intron 40.0%
ATACGATGAAGAGTGGGAAA+GGG + chr7_1:62284703-62284722 Msa1029030:intron 40.0%
AACTAAGGGGTTTATTGGAG+AGG + chr7_1:62284735-62284754 Msa1029030:intron 40.0%
ACTAAGGGGTTTATTGGAGA+GGG + chr7_1:62284736-62284755 Msa1029030:intron 40.0%
AGCATTCATGCTTTCCAATC+TGG + chr7_1:62285063-62285082 Msa1029030:intron 40.0%
CTGGTTGAAAGCTTCAAAGT+TGG + chr7_1:62285082-62285101 Msa1029030:intron 40.0%
GTTCAGCAAAGACCAATTCA+AGG + chr7_1:62285148-62285167 Msa1029030:intron 40.0%
CTGATGACTACACCTTGAAT+TGG - chr7_1:62285163-62285182 None:intergenic 40.0%
GATGTACATGTAGCCAAATC+AGG + chr7_1:62285218-62285237 Msa1029030:intron 40.0%
TATACAAGCACACCCTGATT+TGG - chr7_1:62285234-62285253 None:intergenic 40.0%
TTTCTCCATGTGCATAAGAG+TGG + chr7_1:62285320-62285339 Msa1029030:intron 40.0%
ACAATCCACTCTTATGCACA+TGG - chr7_1:62285328-62285347 None:intergenic 40.0%
! TCATGACTCATGAGTGTTGT+TGG + chr7_1:62285348-62285367 Msa1029030:intron 40.0%
! CATGACTCATGAGTGTTGTT+GGG + chr7_1:62285349-62285368 Msa1029030:intron 40.0%
AAACTCTGATGTACTACCAC+TGG + chr7_1:62285506-62285525 Msa1029030:intron 40.0%
AACTCTGATGTACTACCACT+GGG + chr7_1:62285507-62285526 Msa1029030:intron 40.0%
! GTGTGAGTGTTGTAATCTCT+AGG + chr7_1:62285557-62285576 Msa1029030:intron 40.0%
! ATCAATCTCTGGTGTGGTTT+TGG + chr7_1:62285618-62285637 Msa1029030:intron 40.0%
CCGGGATAACAATGTCATAA+AGG - chr7_1:62285681-62285700 None:intergenic 40.0%
CTACACTATATTTAGCAGCC+GGG - chr7_1:62285699-62285718 None:intergenic 40.0%
TATCATGAACTTTGCAGGTG+TGG + chr7_1:62285743-62285762 Msa1029030:intron 40.0%
! TTTGGAGCTATCACTTTGCA+AGG - chr7_1:62285770-62285789 None:intergenic 40.0%
GCAACCAAGATAACAAGGTA+TGG + chr7_1:62285843-62285862 Msa1029030:intron 40.0%
TGGCCTGACATAGTGTTTAA+TGG + chr7_1:62285916-62285935 Msa1029030:intron 40.0%
! CACCTTAATTCCTAGCTCTT+TGG - chr7_1:62285959-62285978 None:intergenic 40.0%
CAAAGAGCTAGGAATTAAGG+TGG + chr7_1:62285957-62285976 Msa1029030:CDS 40.0%
! AGCAACTTTTCCCTATGCTA+GGG - chr7_1:62286228-62286247 None:intergenic 40.0%
! AAGCAACTTTTCCCTATGCT+AGG - chr7_1:62286229-62286248 None:intergenic 40.0%
! TCATGGGCTATCTATAAAGG+TGG + chr7_1:62286275-62286294 Msa1029030:three_prime_UTR 40.0%
ATCTATAAAGGTGGCTCAGA+TGG + chr7_1:62286284-62286303 Msa1029030:three_prime_UTR 40.0%
AAATTGAGTCAGTGCTGTCA+AGG + chr7_1:62286352-62286371 Msa1029030:three_prime_UTR 40.0%
AATTGAGTCAGTGCTGTCAA+GGG + chr7_1:62286353-62286372 Msa1029030:three_prime_UTR 40.0%
CAAGGGATACCTAATGTACA+TGG + chr7_1:62286370-62286389 Msa1029030:three_prime_UTR 40.0%
GCTAGACGTCATTAAGTGTA+CGG - chr7_1:62286419-62286438 None:intergenic 40.0%
CACTTAATGACGTCTAGCAA+CGG + chr7_1:62286421-62286440 Msa1029030:three_prime_UTR 40.0%
TCCAGAAATACACATTGGGA+TGG - chr7_1:62286502-62286521 None:intergenic 40.0%
! TGCGGTTGTTATTATGAGGG+TGG - chr7_1:62283130-62283149 None:intergenic 45.0%
ATGTGAAGGGGAAGAAGAGT+GGG - chr7_1:62283204-62283223 None:intergenic 45.0%
GCATGTGGAGAGTGAAGAAT+TGG - chr7_1:62283255-62283274 None:intergenic 45.0%
GTGCAGAGATTAAGAGCCAT+TGG - chr7_1:62283283-62283302 None:intergenic 45.0%
!! AGAAGTACTATCGAACACGG+TGG - chr7_1:62283326-62283345 None:intergenic 45.0%
TCTTCATCGAAGCCATCACT+TGG + chr7_1:62283343-62283362 Msa1029030:CDS 45.0%
GAAGAGGAAGAACCAAGTGA+TGG - chr7_1:62283358-62283377 None:intergenic 45.0%
AGCTTAAGCTTGAGGAAGAG+TGG + chr7_1:62283430-62283449 Msa1029030:CDS 45.0%
GCTTAAGCTTGAGGAAGAGT+GGG + chr7_1:62283431-62283450 Msa1029030:CDS 45.0%
AATGATTAACGTCGCCACGA+TGG + chr7_1:62283878-62283897 Msa1029030:intron 45.0%
ATGATTAACGTCGCCACGAT+GGG + chr7_1:62283879-62283898 Msa1029030:intron 45.0%
TTGTTTAGTGACACGTTGGG+AGG - chr7_1:62284606-62284625 None:intergenic 45.0%
! GAGGAGGTAATTCACTGGTT+TGG + chr7_1:62284959-62284978 Msa1029030:intron 45.0%
ACTCTGATGTACTACCACTG+GGG + chr7_1:62285508-62285527 Msa1029030:intron 45.0%
TATGGTTGCCCATGCTTTCT+TGG + chr7_1:62285896-62285915 Msa1029030:intron 45.0%
! ATGTCAGGCCAAGAAAGCAT+GGG - chr7_1:62285907-62285926 None:intergenic 45.0%
TATGTCAGGCCAAGAAAGCA+TGG - chr7_1:62285908-62285927 None:intergenic 45.0%
TAATGGTTATTGGCAGCCCT+TGG + chr7_1:62285933-62285952 Msa1029030:intron 45.0%
! ATTCCTAGCTCTTTGGCCAA+GGG - chr7_1:62285952-62285971 None:intergenic 45.0%
! AATTCCTAGCTCTTTGGCCA+AGG - chr7_1:62285953-62285972 None:intergenic 45.0%
GGCCAAAGAGCTAGGAATTA+AGG + chr7_1:62285954-62285973 Msa1029030:CDS 45.0%
GCTAGAACGAACAGTGTCAA+TGG - chr7_1:62286061-62286080 None:intergenic 45.0%
TGCAATTGTAAGCTGCTGAG+TGG + chr7_1:62286152-62286171 Msa1029030:three_prime_UTR 45.0%
ATTCCGGCTGGACAAAACAA+AGG + chr7_1:62286469-62286488 Msa1029030:three_prime_UTR 45.0%
!!! ACACCTTTGTTTTGTCCAGC+CGG - chr7_1:62286475-62286494 None:intergenic 45.0%
GCCATCCCAATGTGTATTTC+TGG + chr7_1:62286498-62286517 Msa1029030:three_prime_UTR 45.0%
!! TTAATAATTAATTTATCATT+TGG + chr7_1:62283620-62283639 Msa1029030:intron 5.0%
GATGTGAAGGGGAAGAAGAG+TGG - chr7_1:62283205-62283224 None:intergenic 50.0%
!! GACTCTGAGATATGCTCGTG+TGG - chr7_1:62283233-62283252 None:intergenic 50.0%
TCTCCACATGCCAACACCAA+TGG + chr7_1:62283264-62283283 Msa1029030:exon 50.0%
ATCTCTGCACCTCCCCTAAA+TGG + chr7_1:62283293-62283312 Msa1029030:CDS 50.0%
TGCACCTCCCCTAAATGGAT+TGG + chr7_1:62283298-62283317 Msa1029030:CDS 50.0%
! GGTGGTGCCAATCCATTTAG+GGG - chr7_1:62283308-62283327 None:intergenic 50.0%
! CGGTGGTGCCAATCCATTTA+GGG - chr7_1:62283309-62283328 None:intergenic 50.0%
! ACGGTGGTGCCAATCCATTT+AGG - chr7_1:62283310-62283329 None:intergenic 50.0%
! AGTAACTTGTCCGACGGTCA+CGG - chr7_1:62283497-62283516 None:intergenic 50.0%
!! GAGCACGACGGTTTTATCAC+CGG - chr7_1:62283560-62283579 None:intergenic 50.0%
TGCTCGACATGTACACCCAA+TGG + chr7_1:62283575-62283594 Msa1029030:CDS 50.0%
CCACGATGGGTAGAAGTTCA+GGG + chr7_1:62283892-62283911 Msa1029030:intron 50.0%
GTAACTAGTAACGCCGTGCA+TGG - chr7_1:62284321-62284340 None:intergenic 50.0%
CAAGGTGTAGTCATCAGCTG+AGG + chr7_1:62285166-62285185 Msa1029030:intron 50.0%
! CGGCTGGCTGATCACTATTT+AGG - chr7_1:62285386-62285405 None:intergenic 50.0%
! TGGGGTCTTGTGCAAGTAGT+TGG + chr7_1:62285526-62285545 Msa1029030:intron 50.0%
AAGCTGCTGAGTGGAAGATG+AGG + chr7_1:62286161-62286180 Msa1029030:three_prime_UTR 50.0%
TCTCGCACCCAAGATCATTC+CGG + chr7_1:62286453-62286472 Msa1029030:three_prime_UTR 50.0%
TGTCCAGCCGGAATGATCTT+GGG - chr7_1:62286463-62286482 None:intergenic 50.0%
TTGTCCAGCCGGAATGATCT+TGG - chr7_1:62286464-62286483 None:intergenic 50.0%
GTGTGGTCGTGGATGTGAAG+GGG - chr7_1:62283216-62283235 None:intergenic 55.0%
CGTGTGGTCGTGGATGTGAA+GGG - chr7_1:62283217-62283236 None:intergenic 55.0%
TCGTGTGGTCGTGGATGTGA+AGG - chr7_1:62283218-62283237 None:intergenic 55.0%
GAGATATGCTCGTGTGGTCG+TGG - chr7_1:62283227-62283246 None:intergenic 55.0%
!! GAGCCATTGGTGTTGGCATG+TGG - chr7_1:62283270-62283289 None:intergenic 55.0%
GGTGCCAATCCATTTAGGGG+AGG - chr7_1:62283305-62283324 None:intergenic 55.0%
TCACCGGCGGCATTAACGAT+GGG - chr7_1:62283544-62283563 None:intergenic 55.0%
ATCACCGGCGGCATTAACGA+TGG - chr7_1:62283545-62283564 None:intergenic 55.0%
!! CACGACGGTTTTATCACCGG+CGG - chr7_1:62283557-62283576 None:intergenic 55.0%
GGTGTACATGTCGAGCACGA+CGG - chr7_1:62283572-62283591 None:intergenic 55.0%
GCCACGATGGGTAGAAGTTC+AGG + chr7_1:62283891-62283910 Msa1029030:intron 55.0%
CCCTGAACTTCTACCCATCG+TGG - chr7_1:62283895-62283914 None:intergenic 55.0%
CTACTTGCACAAGACCCCAG+TGG - chr7_1:62285525-62285544 None:intergenic 55.0%
ACTTGTCCGACGGTCACGGT+GGG - chr7_1:62283493-62283512 None:intergenic 60.0%
AACTTGTCCGACGGTCACGG+TGG - chr7_1:62283494-62283513 None:intergenic 60.0%
TGGCCCATCGTTAATGCCGC+CGG + chr7_1:62283538-62283557 Msa1029030:CDS 60.0%
CAGCCCTTGGCCAAAGAGCT+AGG + chr7_1:62285946-62285965 Msa1029030:intron 60.0%
GCACCCAAGATCATTCCGGC+TGG + chr7_1:62286457-62286476 Msa1029030:three_prime_UTR 60.0%
CTTGTCCGACGGTCACGGTG+GGG - chr7_1:62283492-62283511 None:intergenic 65.0%
ACTGGCCCCACCGTGACCGT+CGG + chr7_1:62283484-62283503 Msa1029030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62283011 62286537 62283011 ID=Msa1029030;Name=Msa1029030
chr7_1 mRNA 62283011 62286537 62283011 ID=Msa1029030-mRNA-1;Parent=Msa1029030;Name=Msa1029030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=260|1|1|1|1|1|3|454|186
chr7_1 exon 62283011 62283596 62283011 ID=Msa1029030-mRNA-1:exon:13236;Parent=Msa1029030-mRNA-1
chr7_1 exon 62285760 62285859 62285760 ID=Msa1029030-mRNA-1:exon:13237;Parent=Msa1029030-mRNA-1
chr7_1 exon 62285949 62286537 62285949 ID=Msa1029030-mRNA-1:exon:13238;Parent=Msa1029030-mRNA-1
chr7_1 five_prime_UTR 62283011 62283270 62283011 ID=Msa1029030-mRNA-1:five_prime_utr;Parent=Msa1029030-mRNA-1
chr7_1 CDS 62283271 62283596 62283271 ID=Msa1029030-mRNA-1:cds;Parent=Msa1029030-mRNA-1
chr7_1 CDS 62285760 62285859 62285760 ID=Msa1029030-mRNA-1:cds;Parent=Msa1029030-mRNA-1
chr7_1 CDS 62285949 62286083 62285949 ID=Msa1029030-mRNA-1:cds;Parent=Msa1029030-mRNA-1
chr7_1 three_prime_UTR 62286084 62286537 62286084 ID=Msa1029030-mRNA-1:three_prime_utr;Parent=Msa1029030-mRNA-1
Gene Sequence

>Msa1029030

ATGCCAACACCAATGGCTCTTAATCTCTGCACCTCCCCTAAATGGATTGGCACCACCGTGTTCGATAGTACTTCTTCATCGAAGCCATCACTTGGTTCTTCCTCTTCCACCACTTCATTTTCTTCTTCCATTTTGAATTCGAAGAGTGTTGGTCTCAAAAGCTTAAGCTTGAGGAAGAGTGGGAGTTTCAGTGTAAGATCAAGCTTGGAAACTACTGGCCCCACCGTGACCGTCGGACAAGTTACTGAAGTTAACAAGGATACGTTTTGGCCCATCGTTAATGCCGCCGGTGATAAAACCGTCGTGCTCGACATGTACACCCAATGGTGTGGTCCTTGCAAAGTGATAGCTCCAAAATACAAAGAATTAGCTGAGAAGTATTTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGATAACAAGCCCTTGGCCAAAGAGCTAGGAATTAAGGTGGTTCCCACTTTTAAAATTCTGAAAGACAACAAGGTTGTAAAAGAAGTAACTGGAGCTAAATATGATGATTTGGTCTTTGCCATTGACACTGTTCGTTCTAGCTAA

Protein sequence

>Msa1029030

MPTPMALNLCTSPKWIGTTVFDSTSSSKPSLGSSSSTTSFSSSILNSKSVGLKSLSLRKSGSFSVRSSLETTGPTVTVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKYKELAEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKYDDLVFAIDTVRSS*