AlfalfaGEDB | Msa0375060

M. sativa cultivar zhongmu-4 / Msa0375060

KEGG: -
GO: GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120
PFAM: PF02990.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375060	XP_039684528.1	96.763	587	2	4	4	573	5	591	0.0	1154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375060	sp\|Q9ZPS7\|TMN3_ARATH	86.348	586	62	5	5	573	8	592	0.0	1006

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375060	A0A396GMP8	96.763	587	2	4	4	573	5	591	0.0	1154

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0375060	0.833176	6.197747e-56	-8.615850e-47
Msa0001950	Msa0375060	-0.820336	7.238841e-53	-8.615850e-47
Msa0003470	Msa0375060	-0.812387	4.348786e-51	-8.615850e-47
Msa0006700	Msa0375060	-0.842269	2.866763e-58	-8.615850e-47
Msa0008850	Msa0375060	-0.860877	1.520581e-63	-8.615850e-47
Msa0011720	Msa0375060	-0.809509	1.826717e-50	-8.615850e-47
Msa0013050	Msa0375060	0.805864	1.086724e-49	-8.615850e-47
Msa0017120	Msa0375060	-0.818722	1.689639e-52	-8.615850e-47
Msa0017940	Msa0375060	-0.806881	6.631401e-50	-8.615850e-47
Msa0020630	Msa0375060	-0.861381	1.067676e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375060	MtrunA17_Chr8g0375501	96.763	587	2	4	4	573	5	591	0.0	1154
Msa0375060	MtrunA17_Chr6g0480551	84.509	581	72	5	10	573	9	588	0.0	986
Msa0375060	MtrunA17_Chr5g0434001	74.315	584	132	5	8	573	24	607	0.0	894
Msa0375060	MtrunA17_Chr4g0026371	47.578	578	275	8	17	573	19	589	0.0	533
Msa0375060	MtrunA17_Chr8g0380651	39.616	573	320	8	22	573	22	589	2.84e-135	406
Msa0375060	MtrunA17_Chr2g0277491	39.930	571	319	8	22	573	18	583	6.57e-134	402
Msa0375060	MtrunA17_Chr8g0342031	34.154	609	332	10	29	573	45	648	1.72e-116	359
Msa0375060	MtrunA17_Chr1g0150181	32.577	617	341	12	24	573	29	637	6.94e-105	329
Msa0375060	MtrunA17_Chr3g0136881	32.512	609	336	11	32	573	36	636	1.14e-103	326
Msa0375060	MtrunA17_Chr4g0065301	27.044	636	364	19	27	573	32	656	2.64e-74	249

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375060	AT2G01970.1	86.348	586	62	5	5	573	8	592	0.0	1006
Msa0375060	AT1G14670.1	86.261	575	62	4	16	573	18	592	0.0	973
Msa0375060	AT5G37310.1	80.416	577	96	4	14	573	17	593	0.0	928
Msa0375060	AT5G37310.2	80.416	577	96	4	14	573	17	593	0.0	928
Msa0375060	AT1G08350.3	49.147	586	273	9	8	573	9	589	0.0	576
Msa0375060	AT1G08350.2	49.147	586	273	9	8	573	9	589	0.0	576
Msa0375060	AT1G08350.1	47.852	512	243	8	82	573	1	508	3.61e-169	490
Msa0375060	AT1G08350.4	47.860	514	244	8	8	501	9	518	4.47e-167	486
Msa0375060	AT1G10950.1	38.908	568	323	8	25	573	27	589	9.39e-131	395
Msa0375060	AT3G13772.1	32.091	617	334	12	29	573	38	641	5.31e-109	340

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Find 156 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTGCCATTGCCATCT+GGG	0.456769	3_1:-74657500	None:intergenic
AAAGAAAAGACTGAAGCGCT+TGG	0.559289	3_1:+74656036	Msa0375060:CDS
AAAGAAGCCATAGCAGATGC+AGG	0.557569	3_1:-74659923	None:intergenic
AAAGAAGGAAGAGAAGAAAA+TGG	0.197169	3_1:+74654332	Msa0375060:exon
AAAGACTGAAGCGCTTGGTG+AGG	0.652344	3_1:+74656041	Msa0375060:CDS
AAATAAAGCTCCTCGGTTGT+AGG	0.389595	3_1:-74657021	None:intergenic
AAATGGGAAGAAGTGTCTTA+TGG	0.378574	3_1:+74654349	Msa0375060:exon
AACCCTGCCATTGCCATCTG+GGG	0.595625	3_1:-74657499	None:intergenic
AACTGTTGACAAAGAAGGAA+AGG	0.575555	3_1:+74656248	Msa0375060:CDS
AAGAAGGAAGAGAAGAAAAT+GGG	0.416275	3_1:+74654333	Msa0375060:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGGAAGAGAAGAAAA+TGG	+	chr3_1:74654332-74654351	Msa0375060:exon	30.0%
AAGAAGGAAGAGAAGAAAAT+GGG	+	chr3_1:74654333-74654352	Msa0375060:exon	30.0%
GAGAGAAATTGAAAAGAGAT+CGG	-	chr3_1:74654502-74654521	None:intergenic	30.0%
AATTTACCTGTTACACAGAA+TGG	-	chr3_1:74654703-74654722	None:intergenic	30.0%
CTAGCTGAATTTGAACAAAT+TGG	+	chr3_1:74655007-74655026	Msa0375060:intron	30.0%
ATGCTAACCAAAATCATAAG+AGG	-	chr3_1:74655265-74655284	None:intergenic	30.0%
ATTCTTCTGACTGTTGTAAT+GGG	+	chr3_1:74655315-74655334	Msa0375060:intron	30.0%
TAACTAGAAAGGAAAACCAT+TGG	-	chr3_1:74655659-74655678	None:intergenic	30.0%
AGCAAGATGTTTAACTAGAA+AGG	-	chr3_1:74655670-74655689	None:intergenic	30.0%
GAAAATATTTATACTCGCTC+GGG	-	chr3_1:74656278-74656297	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	74654246	74660395	74654246	ID=Msa0375060;Name=Msa0375060
chr3_1	mRNA	74654246	74660395	74654246	ID=Msa0375060-mRNA-1;Parent=Msa0375060;Name=Msa0375060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=105\|0.6\|0.45\|1\|0.5\|0.36\|11\|372\|573
chr3_1	exon	74654246	74654496	74654246	ID=Msa0375060-mRNA-1:exon:17321;Parent=Msa0375060-mRNA-1
chr3_1	exon	74654675	74654715	74654675	ID=Msa0375060-mRNA-1:exon:17322;Parent=Msa0375060-mRNA-1
chr3_1	exon	74656028	74656185	74656028	ID=Msa0375060-mRNA-1:exon:17323;Parent=Msa0375060-mRNA-1
chr3_1	exon	74656195	74656428	74656195	ID=Msa0375060-mRNA-1:exon:17324;Parent=Msa0375060-mRNA-1
chr3_1	exon	74656441	74656613	74656441	ID=Msa0375060-mRNA-1:exon:17325;Parent=Msa0375060-mRNA-1
chr3_1	exon	74656732	74656869	74656732	ID=Msa0375060-mRNA-1:exon:17326;Parent=Msa0375060-mRNA-1
chr3_1	exon	74656977	74657133	74656977	ID=Msa0375060-mRNA-1:exon:17327;Parent=Msa0375060-mRNA-1
chr3_1	exon	74657223	74657394	74657223	ID=Msa0375060-mRNA-1:exon:17328;Parent=Msa0375060-mRNA-1
chr3_1	exon	74657407	74657551	74657407	ID=Msa0375060-mRNA-1:exon:17329;Parent=Msa0375060-mRNA-1
chr3_1	exon	74657570	74657707	74657570	ID=Msa0375060-mRNA-1:exon:17330;Parent=Msa0375060-mRNA-1
chr3_1	exon	74659804	74660395	74659804	ID=Msa0375060-mRNA-1:exon:17331;Parent=Msa0375060-mRNA-1
chr3_1	five_prime_UTR	74654246	74654350	74654246	ID=Msa0375060-mRNA-1:five_prime_utr;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74654351	74654496	74654351	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74654675	74654715	74654675	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74656028	74656185	74656028	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74656195	74656428	74656195	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74656441	74656613	74656441	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74656732	74656869	74656732	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74656977	74657133	74656977	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74657223	74657394	74657223	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74657407	74657551	74657407	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74657570	74657707	74657570	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	CDS	74659804	74660023	74659804	ID=Msa0375060-mRNA-1:cds;Parent=Msa0375060-mRNA-1
chr3_1	three_prime_UTR	74660024	74660395	74660024	ID=Msa0375060-mRNA-1:three_prime_utr;Parent=Msa0375060-mRNA-1

Gene Sequence

>Msa0375060

ATGGGAAGAAGTGTCTTATGGATCCACCTGCTGATCTCTCTTCTCGCTGCCACTCGCGTCAGATCCGATGCCTCCGATCATCGTTACAGCGACGGCGATGCCGTTCCTCTTTACGCCAATAAAGTCGGTCCCTTTCACAATCCCAGTGAAACGTATCGTTACCTTGACCTTCCATTCTGTGTAACAGGTCATGAGAAAGAAAAGACTGAAGCGCTTGGTGAGGTGTTGAATGGAGATCGCCTTGTTAGTGCTCCTTATGAACTTAAGTTTAAAAAAGAGAAAGACTCTACGGTTGTCTGCAAGAAGACGCTCACAAGGGAGCAAGTTAATCAGTTCCGAGAGGCAGACTATTATTTCCAAATGTATTACGATGACTTGCCAATCTGGGGATTTATTGGAACTGTTGACAAAGAAGGAAAGGCAGACCCGAGCGAGTATAAATATTTTCTTTACAAGCACATTCAGTTTGATGTTCTGTACAACAAAGATCGTGTGATTGAAATCAGTGCCCGTATGGACCCTCATTCTGTGGTTGACCTGACTGAGGACAGGGAAGTGGATGTTGAGTTTATGTACACAGAAACTGATATTCCTTTTGAGAAGAGAATGGAAAAATACTCTCAATCTTCTTCTCTTCCACATCACTTGGAGATTCACTGGTTCTCCATCATAAACTCCTGTGTGACGGTTCTTCTTTTGACTGGTTTCCTGGCAACCATTCTCATGCGTGTCTTGAAGAATGATTTTATGAAATATGCTCAAGACGAGGAAGCTGCTGATGATCAAGAGGAGACAGGATGGAAGTACATTCACGGCGATGTTTTCCGGTTTCCTAAGTTCAAGTCCATATTTGCAGCTGCCCTTGGTTCCGGCACTCAGTTATTCACTCTCACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTATTCTATCCCTACAACCGAGGAGCTTTATTTACTGCACTCGTGGTCATATATGCTCTCACATCTGGAATTGCTGGATATACTGCCACTTCCTTCTATATTCAACTTGAAGGGACTAATTGGGTTAGAAACTTATTGCTGACAGGATGCCTCTTTTGTGGCCCTCTTTTCCTTATGTTCTGCTTCCTTAACACAGTTGCAATCGCTTATAGTGCAACTGCTGCCCTTCCTTTTGGCACAATTTGCGTGATAGTCCTAATATGGACGCTGGTAACTTCGCCATTACTTGTGTTAGGTAAAAATAGCAAAACAGAGTTCCAAGCACCTGTCCGCACTACTAAATATCCCCGAGAAATTCCACCTCTTCCTTGGTACAGGAGCACCATTCCCCAGATGGCAATGGCAGGGTTTCTCCCATTCAGTGCCATCTACATAGAGCTTGTCTGGGGCCACAGGATTTACACTATCTACAGCATACTCTTCATCGTCTTTATTATTCTGTTGATCGTCACTGCTTTCATCACTGTGGCTTTGACATACTTTCAACTTGCTGCAGAAGATCATGAATGGTGGTGGAGGTCTTTTCTTTGTGGTGGATCAACTGGCTTATTCATCTACGGCTACTGCTTGTATTATTACTACGCAAGATCAGATATGTCTGGTTTTATGCAAACTTCGTTCTTCTTTGGCTACATGGCCTGCATCTGCTATGGCTTCTTTCTCATGCTCGGTAGCGTAGGTTTCCGTGCCTCCCTGCTCTTTGTCCGCCACATATACCGGTCCATCAAGTGTGAGTAG

Protein sequence

>Msa0375060

MGRSVLWIHLLISLLAATRVRSDASDHRYSDGDAVPLYANKVGPFHNPSETYRYLDLPFCVTGHEKEKTEALGEVLNGDRLVSAPYELKFKKEKDSTVVCKKTLTREQVNQFREADYYFQMYYDDLPIWGFIGTVDKEGKADPSEYKYFLYKHIQFDVLYNKDRVIEISARMDPHSVVDLTEDREVDVEFMYTETDIPFEKRMEKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPKFKSIFAAALGSGTQLFTLTIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGTNWVRNLLLTGCLFCGPLFLMFCFLNTVAIAYSATAALPFGTICVIVLIWTLVTSPLLVLGKNSKTEFQAPVRTTKYPREIPPLPWYRSTIPQMAMAGFLPFSAIYIELVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYGYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGSVGFRASLLFVRHIYRSIKCE*