AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0158890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0158890 MtrunA17_Chr1g0171191 97.831 415 8 1 1 415 1 414 0.0 791
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0158890 AT3G56160.3 63.661 366 128 3 52 415 47 409 3.35e-149 429
Msa0158890 AT3G56160.1 63.388 366 127 4 54 415 74 436 1.86e-146 423
Msa0158890 AT3G56160.2 62.866 307 111 1 52 358 47 350 2.04e-121 357
Msa0158890 AT3G56160.5 64.639 263 91 1 54 314 74 336 6.65e-104 311
Msa0158890 AT3G56160.4 60.000 215 86 0 52 266 47 261 3.28e-74 234

Find 149 sgRNAs with CRISPR-Local

Find 723 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATCATGTATCCAAAAT+TGG 0.149667 1_4:-28777690 Msa0158890:CDS
AATTCCAAACGGCCCAATTT+TGG 0.174825 1_4:+28777677 None:intergenic
GCATGGCCTGTTGGACTCTT+TGG 0.175566 1_4:-28777491 Msa0158890:CDS
CAATTACCTTTCCCAAAATA+AGG 0.180711 1_4:+28773527 None:intergenic
ACTTCTTCATCTGACCTTAT+TGG 0.189310 1_4:-28768401 Msa0158890:CDS
CTCTGATTTCTATTCACTTA+TGG 0.205037 1_4:-28767609 Msa0158890:three_prime_UTR
AGACATCCACCACTCATTAT+TGG 0.213305 1_4:-28767511 Msa0158890:three_prime_UTR
GTACAAGAGCATACTAATTT+TGG 0.220761 1_4:+28767732 None:intergenic
CTCTTGTACATTGTTCATTC+TGG 0.239014 1_4:-28767718 Msa0158890:three_prime_UTR
CATGGCCTGTTGGACTCTTT+GGG 0.258872 1_4:-28777490 Msa0158890:CDS
TGTGGTGCATTTGGAGAATC+TGG 0.261628 1_4:-28768073 Msa0158890:CDS
ATTTGGAGAATCTGGGTTAC+TGG 0.268679 1_4:-28768065 Msa0158890:CDS
GCCCCTAGCAAAGCTCAAAA+TGG 0.283477 1_4:+28778227 None:intergenic
ACTTTGATTCTGCAGCTTGC+TGG 0.286403 1_4:-28775120 Msa0158890:intron
TTACATGATTACTTGGTATA+AGG 0.296905 1_4:+28767563 None:intergenic
GTGGCGTGAGGATGAGTAAA+TGG 0.299448 1_4:+28778442 None:intergenic
CAACCCCAAGAATTTATTAC+AGG 0.300555 1_4:-28775726 Msa0158890:intron
CGGGAAGAAGGGGAAAATAG+AGG 0.303301 1_4:+28778393 None:intergenic
CTAAACCTGTAATAAATTCT+TGG 0.309750 1_4:+28775721 None:intergenic
AATTACCTTTCCCAAAATAA+GGG 0.315621 1_4:+28773528 None:intergenic
GTATGATGGATGATGGTATT+TGG 0.319762 1_4:+28778580 None:intergenic
TGAAGGGAGTGGGGCGGTGG+TGG 0.325921 1_4:+28778328 None:intergenic
TCTATAACCGCTACCATTAC+TGG 0.327775 1_4:+28768103 None:intergenic
GAGCCACTTTGTGGTGCATT+TGG 0.332991 1_4:-28768082 Msa0158890:CDS
TAAACCTGTAATAAATTCTT+GGG 0.340341 1_4:+28775722 None:intergenic
ATGGCGAGGGCGGGAAGAAG+GGG 0.347970 1_4:+28778383 None:intergenic
GTATCCAAAATTGGGCCGTT+TGG 0.365828 1_4:-28777681 Msa0158890:CDS
GCGTAGAGTGAGGGATTTAA+TGG 0.367506 1_4:+28778350 None:intergenic
CTGATTTCTGCGGTGACGTT+AGG 0.368875 1_4:-28777747 Msa0158890:CDS
GTCTGAAGGGAGTGGGGCGG+TGG 0.369064 1_4:+28778325 None:intergenic
TTAAGCCACCTTGACATTGC+CGG 0.369195 1_4:+28767894 None:intergenic
CAGCATATAGTTCAATATAA+TGG 0.387674 1_4:-28767648 Msa0158890:three_prime_UTR
AATATTACCCTGGAAAAGTA+TGG 0.392592 1_4:+28775762 None:intergenic
ATAGTTCAATATAATGGATA+TGG 0.393051 1_4:-28767642 Msa0158890:three_prime_UTR
AGTTGGCATACAGCAAAATA+TGG 0.395674 1_4:+28775301 None:intergenic
ACAGTAATATCTAACTTGTT+AGG 0.396771 1_4:-28775069 Msa0158890:CDS
AACTAGGCAGACTGTAATAA+TGG 0.413349 1_4:+28778506 None:intergenic
GGATGGCGAGGGCGGGAAGA+AGG 0.414231 1_4:+28778381 None:intergenic
GGACTGCTTACATGATTACT+TGG 0.421776 1_4:+28767556 None:intergenic
AATATCATGTATCCAAAATT+GGG 0.421936 1_4:-28777689 Msa0158890:CDS
CGGAGTCTTTCAATTATCTC+TGG 0.427541 1_4:-28768358 Msa0158890:CDS
ACCACTACCATCCAACTGAT+TGG 0.435166 1_4:+28778290 None:intergenic
GATGGCGAGGGCGGGAAGAA+GGG 0.436446 1_4:+28778382 None:intergenic
AATGCTATTGAATACCAATA+AGG 0.454180 1_4:+28768387 None:intergenic
AAGAGTGTTAACAATTTGCT+TGG 0.457278 1_4:-28767779 Msa0158890:three_prime_UTR
TCAGAAAACATTACCAGTAA+TGG 0.457392 1_4:-28768116 Msa0158890:intron
ATCACAAAATTTGTAGCTAG+TGG 0.459990 1_4:-28773613 Msa0158890:CDS
TCGAGTGCGGTGGCTGAACT+AGG 0.461541 1_4:+28778490 None:intergenic
CATTATATTGAACTATATGC+TGG 0.465582 1_4:+28767649 None:intergenic
TGATTTCTATTCACTTATGG+TGG 0.468754 1_4:-28767606 Msa0158890:three_prime_UTR
ACAAGCCCAAAGAGTCCAAC+AGG 0.469384 1_4:+28777485 None:intergenic
CAGTTGGATGGTAGTGGTAG+TGG 0.470738 1_4:-28778285 Msa0158890:CDS
TAAGCCACCTTGACATTGCC+GGG 0.474863 1_4:+28767895 None:intergenic
GGATTAACATGTCCTAGTCT+TGG 0.479373 1_4:-28777726 Msa0158890:CDS
CTGTAATAAATTCTTGGGGT+TGG 0.480588 1_4:+28775727 None:intergenic
GCTGTAGAAGCATGGCCTGT+TGG 0.481048 1_4:-28777500 Msa0158890:CDS
GGAGTGAGGATGGCGAGGGC+GGG 0.485143 1_4:+28778374 None:intergenic
GGGAAGAAGGGGAAAATAGA+GGG 0.485919 1_4:+28778394 None:intergenic
AAATTTGTAGCTAGTGGAGT+TGG 0.486943 1_4:-28773607 Msa0158890:CDS
AAGAGTCAAAAGGATTGAGC+TGG 0.487565 1_4:-28778257 Msa0158890:CDS
AGGGGCAATGTCTTACCTCT+AGG 0.489664 1_4:-28778210 Msa0158890:intron
TCGTCTGTGGATTGATATGC+TGG 0.491910 1_4:-28767837 Msa0158890:three_prime_UTR
TTTCTTGTAGCTATTGGACT+GGG 0.493824 1_4:-28770197 Msa0158890:CDS
AGGGGTTGGACGAGAGAATG+AGG 0.495582 1_4:+28778413 None:intergenic
GAAGGGGAAAATAGAGGGGT+TGG 0.496201 1_4:+28778399 None:intergenic
AAAGATCGGAAACAATATGC+TGG 0.501541 1_4:+28767686 None:intergenic
ATATCATCCTGCAGGTACCT+TGG 0.501746 1_4:-28770271 Msa0158890:intron
CCCCTAGCAAAGCTCAAAAT+GGG 0.502048 1_4:+28778228 None:intergenic
GGCGGTGGTGGCGTAGAGTG+AGG 0.502253 1_4:+28778340 None:intergenic
AGTGGAAGTAAAGAGTCAAA+AGG 0.505262 1_4:-28778267 Msa0158890:CDS
CGGAGTGAGGATGGCGAGGG+CGG 0.505348 1_4:+28778373 None:intergenic
TGGATGATGGTATTTGGTGG+TGG 0.505431 1_4:+28778586 None:intergenic
CACTCGACGGAGGTCATGGC+GGG 0.513881 1_4:-28778474 Msa0158890:exon
CGAAATGAATGGTAGTATGA+TGG 0.519663 1_4:+28778566 None:intergenic
GCGGTGGTGGCGTAGAGTGA+GGG 0.521905 1_4:+28778341 None:intergenic
ACACCACTTGATAATGTAGT+TGG 0.522256 1_4:+28775284 None:intergenic
CAGTACCAACGCGAAATGAA+TGG 0.537511 1_4:+28778555 None:intergenic
GGATGATGGTATTTGGTGGT+GGG 0.538553 1_4:+28778587 None:intergenic
GACTTGCTCACTTGTATCCA+AGG 0.541072 1_4:+28770254 None:intergenic
GTGGTGCATTTGGAGAATCT+GGG 0.542143 1_4:-28768072 Msa0158890:CDS
ACTCATACTAGTTGCAAGCC+AGG 0.542506 1_4:-28768293 Msa0158890:intron
TATTCAATAGCATTGCTGTC+CGG 0.543451 1_4:-28768378 Msa0158890:CDS
GTGTTGCGAAGCGAAGAAAT+TGG 0.543607 1_4:-28777527 Msa0158890:CDS
TCCAATCAGTTGGATGGTAG+TGG 0.545642 1_4:-28778291 Msa0158890:CDS
GGATTGAGCACATGGTCTGA+AGG 0.546750 1_4:+28778311 None:intergenic
GCACATGGTCTGAAGGGAGT+GGG 0.546886 1_4:+28778318 None:intergenic
TCATCATTGATTGTCGTCTG+TGG 0.547197 1_4:-28767850 Msa0158890:three_prime_UTR
TGCTGGAGCGAATACTGCAC+TGG 0.547611 1_4:-28775103 Msa0158890:CDS
GGAAGAAGGGGAAAATAGAG+GGG 0.548611 1_4:+28778395 None:intergenic
ATTTAATGGCGGAGTGAGGA+TGG 0.549666 1_4:+28778364 None:intergenic
ACCGCACTCGACGGAGGTCA+TGG 0.556788 1_4:-28778478 Msa0158890:exon
AGCACATGGTCTGAAGGGAG+TGG 0.558159 1_4:+28778317 None:intergenic
CTGAATTTGTAATATTACCC+TGG 0.558885 1_4:+28775752 None:intergenic
CACATGGTCTGAAGGGAGTG+GGG 0.559219 1_4:+28778319 None:intergenic
ATTAGATGTGTTGCAATACA+AGG 0.561844 1_4:+28768037 None:intergenic
GAACACCTTGTAGATTATTG+TGG 0.563250 1_4:-28767956 Msa0158890:intron
ATTACCTTTCCCAAAATAAG+GGG 0.563723 1_4:+28773529 None:intergenic
AACTGATTGGATTGAGCACA+TGG 0.564053 1_4:+28778303 None:intergenic
GCGGTTATAGAGCCACTTTG+TGG 0.565801 1_4:-28768091 Msa0158890:CDS
ATTATATTGAACTATATGCT+GGG 0.566919 1_4:+28767650 None:intergenic
TATTGCAACACATCTAATCC+AGG 0.567214 1_4:-28768032 Msa0158890:intron
AGGGATTTAATGGCGGAGTG+AGG 0.569386 1_4:+28778360 None:intergenic
TACTACCATTCATTTCGCGT+TGG 0.573757 1_4:-28778560 Msa0158890:five_prime_UTR
AAGATCGGAAACAATATGCT+GGG 0.576834 1_4:+28767687 None:intergenic
AGACAATCCCGGCAATGTCA+AGG 0.577252 1_4:-28767902 Msa0158890:CDS
AGTCTTTCAATTATCTCTGG+TGG 0.578014 1_4:-28768355 Msa0158890:CDS
TGATCCCTGAGAAAAGCTTA+CGG 0.582266 1_4:+28770550 None:intergenic
GATTGAGCACATGGTCTGAA+GGG 0.582552 1_4:+28778312 None:intergenic
ATGGCGGAGTGAGGATGGCG+AGG 0.585893 1_4:+28778369 None:intergenic
ATGTGCTCAATCCAATCAGT+TGG 0.587326 1_4:-28778301 Msa0158890:CDS
TCAACAGCGCAACCAAGACT+AGG 0.588891 1_4:+28777714 None:intergenic
TATTGAACTATATGCTGGGA+CGG 0.589004 1_4:+28767654 None:intergenic
ATGCGTCGCAAAGACAATCC+CGG 0.590549 1_4:-28767913 Msa0158890:CDS
ATGGTCTGAAGGGAGTGGGG+CGG 0.591354 1_4:+28778322 None:intergenic
ATGACCTCCGTCGAGTGCGG+TGG 0.591470 1_4:+28778480 None:intergenic
GAAACACATCATGCTGCACA+TGG 0.591773 1_4:-28767806 Msa0158890:three_prime_UTR
AACATTACCAGTAATGGTAG+CGG 0.596517 1_4:-28768110 Msa0158890:CDS
TGGCGTGAGGATGAGTAAAT+GGG 0.597198 1_4:+28778443 None:intergenic
TGGCGGAGTGAGGATGGCGA+GGG 0.599047 1_4:+28778370 None:intergenic
GAGGATGAGTAAATGGGCGG+TGG 0.603068 1_4:+28778449 None:intergenic
CAGAGATAATTGAAAGACTC+CGG 0.603417 1_4:+28768359 None:intergenic
AAGTGGTGTTGCACTTACCC+AGG 0.603604 1_4:-28775270 Msa0158890:intron
TGCAACTAGTATGAGTGCGT+TGG 0.605826 1_4:+28768300 None:intergenic
GAAAAGCCAATAATGAGTGG+TGG 0.607193 1_4:+28767505 None:intergenic
AATGGTAGTATGATGGATGA+TGG 0.607991 1_4:+28778573 None:intergenic
GCCATGACCTCCGTCGAGTG+CGG 0.608605 1_4:+28778477 None:intergenic
AAACCTGTAATAAATTCTTG+GGG 0.616241 1_4:+28775723 None:intergenic
TCGGAAACAATATGCTGGGA+CGG 0.617651 1_4:+28767691 None:intergenic
TCAGAAAAGCCAATAATGAG+TGG 0.618598 1_4:+28767502 None:intergenic
GACGGACTGAAAATAAAGAT+CGG 0.620683 1_4:+28767672 None:intergenic
TCTCCAAATGCACCACAAAG+TGG 0.621477 1_4:+28768079 None:intergenic
AGAGTCAAAAGGATTGAGCT+GGG 0.621773 1_4:-28778256 Msa0158890:CDS
TTACCTTTCCCAAAATAAGG+GGG 0.625879 1_4:+28773530 None:intergenic
ATTTGTAGCTCTGATTTCTG+CGG 0.627818 1_4:-28777757 Msa0158890:intron
TGATGGATGATGGTATTTGG+TGG 0.628815 1_4:+28778583 None:intergenic
GCTCAATCCAATCAGTTGGA+TGG 0.629293 1_4:-28778297 Msa0158890:CDS
GGATACAAGTGAGCAAGTCA+AGG 0.631449 1_4:-28770250 Msa0158890:CDS
TTGGTGCAGCTGTAGAAGCA+TGG 0.632248 1_4:-28777508 Msa0158890:CDS
AGTTCAGCCACCGCACTCGA+CGG 0.633644 1_4:-28778487 Msa0158890:five_prime_UTR
ATGCCAACTACATTATCAAG+TGG 0.643732 1_4:-28775287 Msa0158890:CDS
AATTAAACAGAAACAATGAA+AGG 0.646372 1_4:+28767460 None:intergenic
ATGTCAAGGTGGCTTAAGAG+AGG 0.650713 1_4:-28767888 Msa0158890:exon
TCAGCCACCGCACTCGACGG+AGG 0.671054 1_4:-28778484 Msa0158890:five_prime_UTR
ATGAGGATGAATGTGGCGTG+AGG 0.678200 1_4:+28778430 None:intergenic
CAATCCCGGCAATGTCAAGG+TGG 0.687891 1_4:-28767899 Msa0158890:CDS
TAGAGTGAGGGATTTAATGG+CGG 0.692309 1_4:+28778353 None:intergenic
CGTGAGGATGAGTAAATGGG+CGG 0.692761 1_4:+28778446 None:intergenic
CGAGAGAATGAGGATGAATG+TGG 0.694734 1_4:+28778423 None:intergenic
GCACTCGACGGAGGTCATGG+CGG 0.709719 1_4:-28778475 Msa0158890:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATGATCAAATTATA+GGG - chr1_4:28768684-28768703 Msa0158890:intron 10.0%
!!! TTTATTTAATTTAAGATAGA+AGG + chr1_4:28769103-28769122 None:intergenic 10.0%
!!! ATTAAATTTTAGTAATTGAA+CGG - chr1_4:28771076-28771095 Msa0158890:intron 10.0%
!!! AGTTTAAATTAATTTGTTAA+TGG - chr1_4:28773978-28773997 Msa0158890:intron 10.0%
!!! GTTTAAATTAATTTGTTAAT+GGG - chr1_4:28773979-28773998 Msa0158890:intron 10.0%
!!! TATTATTTCTATTATTAACT+CGG + chr1_4:28774293-28774312 None:intergenic 10.0%
!! AGTTAATAATAGAAATAATA+AGG - chr1_4:28774293-28774312 Msa0158890:intron 10.0%
!!! TATTTTAGATTTGATTAAAT+AGG - chr1_4:28775038-28775057 Msa0158890:intron 10.0%
!!! ATTTTAGATTTGATTAAATA+GGG - chr1_4:28775039-28775058 Msa0158890:intron 10.0%
!!! AATTTATTAATTGTTTGTTT+TGG - chr1_4:28775920-28775939 Msa0158890:intron 10.0%
!! TTGGAAATATAATTAAAAAA+AGG - chr1_4:28775939-28775958 Msa0158890:intron 10.0%
!! TGGAAATATAATTAAAAAAA+GGG - chr1_4:28775940-28775959 Msa0158890:intron 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr1_4:28776336-28776355 Msa0158890:intron 10.0%
!!! TAAACAAAATTTATTTTATC+AGG - chr1_4:28776364-28776383 Msa0158890:intron 10.0%
!!! AAACAAAATTTATTTTATCA+GGG - chr1_4:28776365-28776384 Msa0158890:intron 10.0%
!!! ATAAGTAATTTTTTTTTTGT+AGG - chr1_4:28776397-28776416 Msa0158890:intron 10.0%
!!! TAAGTAATTTTTTTTTTGTA+GGG - chr1_4:28776398-28776417 Msa0158890:intron 10.0%
!!! TGGTTAATTTATTTTTTTAA+GGG + chr1_4:28776501-28776520 None:intergenic 10.0%
!!! ATGGTTAATTTATTTTTTTA+AGG + chr1_4:28776502-28776521 None:intergenic 10.0%
!! ATTATTTATTCAACTAAAAA+AGG - chr1_4:28776534-28776553 Msa0158890:intron 10.0%
!! AATAAAAATAGAAATTAACT+TGG - chr1_4:28776900-28776919 Msa0158890:intron 10.0%
!! AAATATATTCGAACAAAATA+GGG + chr1_4:28767883-28767902 None:intergenic 15.0%
!! TAAATATATTCGAACAAAAT+AGG + chr1_4:28767884-28767903 None:intergenic 15.0%
!! AAAAAAATCATACCAAATTA+GGG + chr1_4:28768101-28768120 None:intergenic 15.0%
!! CAAATTTATGATCAAATTAT+AGG - chr1_4:28768683-28768702 Msa0158890:intron 15.0%
!! AAAGTAAAGAATAAAACATA+CGG + chr1_4:28769554-28769573 None:intergenic 15.0%
!! ATAAGCTATATAAAACTTAT+AGG + chr1_4:28770830-28770849 None:intergenic 15.0%
!! AGAATATTGATAGAAAATAT+TGG - chr1_4:28771112-28771131 Msa0158890:intron 15.0%
!! AAAATATTGTTTAGTACATT+TGG + chr1_4:28771630-28771649 None:intergenic 15.0%
!! TATTAAAACACTTAAAAAAG+TGG - chr1_4:28771758-28771777 Msa0158890:intron 15.0%
!! AAAACAATAATAAGATTAGA+TGG + chr1_4:28772329-28772348 None:intergenic 15.0%
!! ATAATCCATAAAAATTGTAA+TGG + chr1_4:28773001-28773020 None:intergenic 15.0%
!! ATAATCCATAAAAATAGTAA+TGG + chr1_4:28773082-28773101 None:intergenic 15.0%
!!! AAGAGTCATTTTAAATAATA+TGG + chr1_4:28773192-28773211 None:intergenic 15.0%
!!! TTCATTTTATCAGAAATATA+TGG - chr1_4:28773311-28773330 Msa0158890:intron 15.0%
!! AAAAAATCCGTTAAATATTA+CGG + chr1_4:28774219-28774238 None:intergenic 15.0%
!!! AATATTTAACGGATTTTTTA+AGG - chr1_4:28774220-28774239 Msa0158890:intron 15.0%
!!! ATATTTAACGGATTTTTTAA+GGG - chr1_4:28774221-28774240 Msa0158890:intron 15.0%
!!! TGATTAATTTTCTTTTTATG+TGG - chr1_4:28774988-28775007 Msa0158890:intron 15.0%
!!! ATTTTTTTGCTCTTTATTTA+AGG - chr1_4:28775288-28775307 Msa0158890:CDS 15.0%
!! AAATATAATAATTCAAGAGA+AGG + chr1_4:28775523-28775542 None:intergenic 15.0%
!! AAAAGAAAAGAAGATTTAAA+CGG - chr1_4:28775556-28775575 Msa0158890:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr1_4:28776427-28776446 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr1_4:28776086-28776105 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG + chr1_4:28776170-28776189 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr1_4:28776205-28776224 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr1_4:28776427-28776446 Msa0158890:intron 15.0%
!! AAATAATGAAATGCAAAATA+TGG + chr1_4:28776521-28776540 None:intergenic 15.0%
!! TAATTAATGATTGATATTAG+AGG - chr1_4:28776688-28776707 Msa0158890:intron 15.0%
!! AAATAGAATTGATTGAAAAA+TGG - chr1_4:28777141-28777160 Msa0158890:intron 15.0%
!! AATAGAATTGATTGAAAAAT+GGG - chr1_4:28777142-28777161 Msa0158890:intron 15.0%
!! TCTTTCACTTAATTTATTAA+AGG - chr1_4:28777249-28777268 Msa0158890:intron 15.0%
!! CAAAAAAATCATACCAAATT+AGG + chr1_4:28768102-28768121 None:intergenic 20.0%
!! TTCATTTGATTATGTTATGA+GGG - chr1_4:28768197-28768216 Msa0158890:intron 20.0%
!! AAATATCATGTATCCAAAAT+TGG - chr1_4:28768323-28768342 Msa0158890:CDS 20.0%
!! AATATCATGTATCCAAAATT+GGG - chr1_4:28768324-28768343 Msa0158890:CDS 20.0%
!! ATTTATAGATTGCTTTACTA+CGG - chr1_4:28768572-28768591 Msa0158890:intron 20.0%
!!! TTTTTGATTTTTTAATCAGC+CGG - chr1_4:28769436-28769455 Msa0158890:intron 20.0%
!! ACATACGGTATATATAATTT+GGG + chr1_4:28769539-28769558 None:intergenic 20.0%
!! AACATACGGTATATATAATT+TGG + chr1_4:28769540-28769559 None:intergenic 20.0%
!!! TGTTTTATTCTTTACTTTTG+TGG - chr1_4:28769556-28769575 Msa0158890:intron 20.0%
!! ACTAGAATAAATAAACAACA+TGG - chr1_4:28769784-28769803 Msa0158890:intron 20.0%
!! ATCGATATTTGATAAAACAA+TGG + chr1_4:28770097-28770116 None:intergenic 20.0%
!! TAAACCTGTAATAAATTCTT+GGG + chr1_4:28770294-28770313 None:intergenic 20.0%
!! CTTCAATTTAAAAAGATCTA+AGG + chr1_4:28770427-28770446 None:intergenic 20.0%
!!! GATCTTTTTAAATTGAAGAA+TGG - chr1_4:28770429-28770448 Msa0158890:intron 20.0%
!! AATAGAAATAAACACAGAAA+AGG + chr1_4:28770807-28770826 None:intergenic 20.0%
!! AATGCAAAACAAATCTTAAA+TGG + chr1_4:28771016-28771035 None:intergenic 20.0%
!! CTTGAATGATTATAAAATAC+AGG - chr1_4:28771560-28771579 Msa0158890:intron 20.0%
!! TTATTTATACATGCACTATT+AGG - chr1_4:28771981-28772000 Msa0158890:intron 20.0%
!!! ATTAGGTTATTTTATACTAC+TGG - chr1_4:28771998-28772017 Msa0158890:intron 20.0%
!!! TTAGGTTATTTTATACTACT+GGG - chr1_4:28771999-28772018 Msa0158890:intron 20.0%
!! AAGAAAATGAGAATACAAAA+AGG + chr1_4:28772096-28772115 None:intergenic 20.0%
!! GAAGATATAATATGTTTACA+AGG + chr1_4:28772164-28772183 None:intergenic 20.0%
!! AAAAGATAGAAAAAGAAAGA+AGG + chr1_4:28772268-28772287 None:intergenic 20.0%
!! TCACTTATTGAACTTTAATT+TGG + chr1_4:28773156-28773175 None:intergenic 20.0%
!!! TTGATTGCATATATAGTTTT+TGG - chr1_4:28773243-28773262 Msa0158890:intron 20.0%
!!! ATATTTTTCATTGCTTTGAA+TGG - chr1_4:28773449-28773468 Msa0158890:intron 20.0%
!!! TATTTTTCATTGCTTTGAAT+GGG - chr1_4:28773450-28773469 Msa0158890:intron 20.0%
!! ATTATGTTCTTAAGAATTGA+GGG + chr1_4:28773757-28773776 None:intergenic 20.0%
!! TATTATGTTCTTAAGAATTG+AGG + chr1_4:28773758-28773777 None:intergenic 20.0%
!!! ATGGTCATAAATTTAAGATT+AGG + chr1_4:28773879-28773898 None:intergenic 20.0%
!! AAAAATCCGTTAAATATTAC+GGG + chr1_4:28774218-28774237 None:intergenic 20.0%
!!! AAGGTATTACTGAAAAATTA+TGG - chr1_4:28775710-28775729 Msa0158890:intron 20.0%
!!! AAAAGGGTTAATTATGTTTT+TGG - chr1_4:28775956-28775975 Msa0158890:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG - chr1_4:28776116-28776135 Msa0158890:intron 20.0%
!!! TTAAGGGTTAATTATGTTTT+TGG + chr1_4:28776485-28776504 None:intergenic 20.0%
!!! AAATAACTGCTCTATTTTTA+TGG - chr1_4:28776813-28776832 Msa0158890:intron 20.0%
!!! AATAACTGCTCTATTTTTAT+GGG - chr1_4:28776814-28776833 Msa0158890:intron 20.0%
!!! ATTAGAAATAGTTTAGAGTT+CGG - chr1_4:28776957-28776976 Msa0158890:intron 20.0%
!! AATTAAGTGAAAGAAAAGAT+TGG + chr1_4:28777243-28777262 None:intergenic 20.0%
!! TTAAAAATAAATCAATCACC+TGG + chr1_4:28778002-28778021 None:intergenic 20.0%
!! ATTATATTGAACTATATGCT+GGG + chr1_4:28778366-28778385 None:intergenic 20.0%
!!! ATAGTTCAATATAATGGATA+TGG - chr1_4:28778371-28778390 Msa0158890:CDS 20.0%
!! AATTAAACAGAAACAATGAA+AGG + chr1_4:28778556-28778575 None:intergenic 20.0%
!!! TAATTTGTTATGGAAGTATG+AGG - chr1_4:28767991-28768010 Msa0158890:intron 25.0%
!!! AATTTGTTATGGAAGTATGA+GGG - chr1_4:28767992-28768011 Msa0158890:intron 25.0%
!! TTTTTGTCAATGTCTAAGTT+AGG - chr1_4:28768116-28768135 Msa0158890:intron 25.0%
! AATGAGTAAAAGATCCAATT+TGG + chr1_4:28768162-28768181 None:intergenic 25.0%
! CTTCATTTGATTATGTTATG+AGG - chr1_4:28768196-28768215 Msa0158890:intron 25.0%
! GAGATAACAAAAATTCCAAA+CGG + chr1_4:28768350-28768369 None:intergenic 25.0%
!!! TTTGGAATTTTTGTTATCTC+AGG - chr1_4:28768350-28768369 Msa0158890:CDS 25.0%
!!! TGTTTTGATTTCATGACAAT+TGG - chr1_4:28768411-28768430 Msa0158890:intron 25.0%
!!! GTTTTGATTTCATGACAATT+GGG - chr1_4:28768412-28768431 Msa0158890:intron 25.0%
!! TAATATGGACCTCTTTTTAA+AGG - chr1_4:28768713-28768732 Msa0158890:intron 25.0%
!! AATATGGACCTCTTTTTAAA+GGG - chr1_4:28768714-28768733 Msa0158890:intron 25.0%
! ATGATATTAAGCAATGAAAC+GGG + chr1_4:28768901-28768920 None:intergenic 25.0%
! GATGATATTAAGCAATGAAA+CGG + chr1_4:28768902-28768921 None:intergenic 25.0%
! AAACTTTGCAAAATCAGATT+TGG - chr1_4:28769051-28769070 Msa0158890:intron 25.0%
! AAATAGTGATACAGAGTAAT+TGG - chr1_4:28769224-28769243 Msa0158890:intron 25.0%
! AATTAAAATGTGCATGTGTT+AGG - chr1_4:28769335-28769354 Msa0158890:intron 25.0%
! ATTAAAATGTGCATGTGTTA+GGG - chr1_4:28769336-28769355 Msa0158890:intron 25.0%
! CATACGGTATATATAATTTG+GGG + chr1_4:28769538-28769557 None:intergenic 25.0%
! AAGATTCTTATTACGAACTT+TGG - chr1_4:28769992-28770011 Msa0158890:intron 25.0%
! AGATTCTTATTACGAACTTT+GGG - chr1_4:28769993-28770012 Msa0158890:intron 25.0%
!!! TGATCAATGGTTTTAAGATT+TGG - chr1_4:28770058-28770077 Msa0158890:intron 25.0%
! GATAAAACAATGGTTTAGAT+AGG + chr1_4:28770087-28770106 None:intergenic 25.0%
! AAACCTGTAATAAATTCTTG+GGG + chr1_4:28770293-28770312 None:intergenic 25.0%
! CTAAACCTGTAATAAATTCT+TGG + chr1_4:28770295-28770314 None:intergenic 25.0%
! TGACAAAAGTAGTATGTAAA+TGG + chr1_4:28770355-28770374 None:intergenic 25.0%
! TATCATAATTCTTGGAAAGA+TGG - chr1_4:28770504-28770523 Msa0158890:intron 25.0%
!! AGAGAGAAAGATATTGTTTT+AGG + chr1_4:28770554-28770573 None:intergenic 25.0%
! ATCTTGAATTGCATGAAAAT+TGG + chr1_4:28770663-28770682 None:intergenic 25.0%
!! ATATTTTCTTGCTTTCTACA+GGG - chr1_4:28770685-28770704 Msa0158890:intron 25.0%
! AGAAAACATAATGATTACCT+GGG + chr1_4:28770763-28770782 None:intergenic 25.0%
! AAGAAAACATAATGATTACC+TGG + chr1_4:28770764-28770783 None:intergenic 25.0%
!!! ACAGTAATATCTAACTTGTT+AGG - chr1_4:28770944-28770963 Msa0158890:intron 25.0%
! CTAAAATTTAATCAGAGCAT+AGG + chr1_4:28771068-28771087 None:intergenic 25.0%
!!! ACTCTTGGTTTTTCTATATA+AGG + chr1_4:28771246-28771265 None:intergenic 25.0%
! TAAAAATGTGTTACAACTCT+TGG + chr1_4:28771261-28771280 None:intergenic 25.0%
!! AGAGTTGTAACACATTTTTA+AGG - chr1_4:28771261-28771280 Msa0158890:intron 25.0%
! AAGTAAAACACTGTCTAATT+GGG + chr1_4:28771295-28771314 None:intergenic 25.0%
! AAAAGTAATTGTGAGCAATT+AGG - chr1_4:28771426-28771445 Msa0158890:intron 25.0%
! ATATACAAAGATCAAGTAGT+AGG + chr1_4:28771471-28771490 None:intergenic 25.0%
! TGATATGATAAGATGAAATC+TGG - chr1_4:28771526-28771545 Msa0158890:intron 25.0%
! TATACTAGTAAAATGAGCTA+AGG - chr1_4:28771783-28771802 Msa0158890:intron 25.0%
!!! TAATGTTTGATTTGATCGAT+CGG + chr1_4:28771850-28771869 None:intergenic 25.0%
!!! TGCTTTTTATTTATAGACAC+AGG - chr1_4:28772043-28772062 Msa0158890:intron 25.0%
!!! GCTTTTTATTTATAGACACA+GGG - chr1_4:28772044-28772063 Msa0158890:intron 25.0%
!! AAGACTTTTAAATAACTGCT+TGG + chr1_4:28772446-28772465 None:intergenic 25.0%
!!! ATATTAATCCCCCTTATTTT+GGG - chr1_4:28772475-28772494 Msa0158890:intron 25.0%
! AATTACCTTTCCCAAAATAA+GGG + chr1_4:28772488-28772507 None:intergenic 25.0%
! TAGGTTTCTTTATGTTTATG+AGG - chr1_4:28772594-28772613 Msa0158890:intron 25.0%
! TGAATTTCATCAAAAGGTTT+GGG + chr1_4:28772834-28772853 None:intergenic 25.0%
! TAAGTGTGAATTTCATCAAA+AGG + chr1_4:28772840-28772859 None:intergenic 25.0%
! AAATTCACACTTAGAAGAAT+GGG - chr1_4:28772847-28772866 Msa0158890:intron 25.0%
!!! ACATGATAGCTTAGTTTTTT+GGG + chr1_4:28772946-28772965 None:intergenic 25.0%
! ATCCATAAAAATTGTAATGG+AGG + chr1_4:28772998-28773017 None:intergenic 25.0%
!!! TACCACCATTACTATTTTTA+TGG - chr1_4:28773074-28773093 Msa0158890:intron 25.0%
! ATCCATAAAAATAGTAATGG+TGG + chr1_4:28773079-28773098 None:intergenic 25.0%
!! TATGGATTATAGCAAGTAAT+AGG - chr1_4:28773092-28773111 Msa0158890:intron 25.0%
! AAGTAATAGGCAATATGATT+GGG - chr1_4:28773105-28773124 Msa0158890:intron 25.0%
! AAATAATATGGCCAGTAAAT+TGG + chr1_4:28773180-28773199 None:intergenic 25.0%
!! AACAGTTTAAATTTTGTCTG+AGG - chr1_4:28773378-28773397 Msa0158890:intron 25.0%
! AAAGCAGTATACAATAGTTA+TGG - chr1_4:28773640-28773659 Msa0158890:intron 25.0%
! AAGCAGTATACAATAGTTAT+GGG - chr1_4:28773641-28773660 Msa0158890:intron 25.0%
! GGAAATAATTACAAGTGAAA+TGG + chr1_4:28773691-28773710 None:intergenic 25.0%
!!! TATTTTTAAAGAGGCATCTA+TGG + chr1_4:28773898-28773917 None:intergenic 25.0%
!! TAGATGCCTCTTTAAAAATA+TGG - chr1_4:28773898-28773917 Msa0158890:intron 25.0%
! CAAATACCCGTAATATTTAA+CGG - chr1_4:28774209-28774228 Msa0158890:intron 25.0%
!!! ATTAAGTTGGCTAATTAGTT+TGG - chr1_4:28774267-28774286 Msa0158890:intron 25.0%
! AATAGAAATAATAAGGCACA+TGG - chr1_4:28774300-28774319 Msa0158890:intron 25.0%
!! AATCTCTCTTCCTTATTTAT+AGG + chr1_4:28774326-28774345 None:intergenic 25.0%
! ATAAATAAGGAAGAGAGATT+AGG - chr1_4:28774326-28774345 Msa0158890:intron 25.0%
! TAAATAAGGAAGAGAGATTA+GGG - chr1_4:28774327-28774346 Msa0158890:intron 25.0%
! TTAATCATTCATCCATCATT+CGG - chr1_4:28774438-28774457 Msa0158890:intron 25.0%
!! TCTCATCTAAAATACACTAA+AGG - chr1_4:28774461-28774480 Msa0158890:intron 25.0%
!! GATTTTTCACATTGTAAACT+GGG - chr1_4:28774570-28774589 Msa0158890:intron 25.0%
! TAGTCTAGAAGAAGAATTAA+GGG + chr1_4:28774601-28774620 None:intergenic 25.0%
! TTGACTGTATATCTATATAC+GGG + chr1_4:28774855-28774874 None:intergenic 25.0%
! GTTGACTGTATATCTATATA+CGG + chr1_4:28774856-28774875 None:intergenic 25.0%
! AATGATAAGTATGTGCATAA+AGG - chr1_4:28774915-28774934 Msa0158890:intron 25.0%
! AAAGAAAATTAATCAGCTCA+AGG + chr1_4:28774983-28775002 None:intergenic 25.0%
!! ATTTTCTTTTTATGTGGAGT+TGG - chr1_4:28774994-28775013 Msa0158890:intron 25.0%
! ATTTACATATACATGCAGTA+GGG + chr1_4:28775111-28775130 None:intergenic 25.0%
! TATTTACATATACATGCAGT+AGG + chr1_4:28775112-28775131 None:intergenic 25.0%
!!! TAATTTGTTCTTTCACTTAC+TGG + chr1_4:28775137-28775156 None:intergenic 25.0%
!! ACCTGTTTTATGTCTTTTTT+TGG - chr1_4:28775206-28775225 Msa0158890:intron 25.0%
!! CCTGTTTTATGTCTTTTTTT+GGG - chr1_4:28775207-28775226 Msa0158890:intron 25.0%
! ATAGCTACAAGAAAAACTTT+GGG + chr1_4:28775810-28775829 None:intergenic 25.0%
! AATAGCTACAAGAAAAACTT+TGG + chr1_4:28775811-28775830 None:intergenic 25.0%
!! AAAGTTTTTCTTGTAGCTAT+TGG - chr1_4:28775810-28775829 Msa0158890:intron 25.0%
! AAACAAATTTGGATTGAGTA+AGG + chr1_4:28776075-28776094 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr1_4:28776140-28776159 Msa0158890:intron 25.0%
! ATTTCAACAAACTTGTGATT+TGG + chr1_4:28776723-28776742 None:intergenic 25.0%
! AAATAGTGAACCATTATATC+TGG + chr1_4:28776777-28776796 None:intergenic 25.0%
!!! ATAACTGCTCTATTTTTATG+GGG - chr1_4:28776815-28776834 Msa0158890:intron 25.0%
!!! GAACTCTAAACTATTTCTAA+TGG + chr1_4:28776958-28776977 None:intergenic 25.0%
! ATTTCCAAATGTAAGTAGTA+AGG - chr1_4:28777018-28777037 Msa0158890:intron 25.0%
! TTTCCAAATGTAAGTAGTAA+GGG - chr1_4:28777019-28777038 Msa0158890:intron 25.0%
! TATTAAAGGATGCTATTCTT+AGG - chr1_4:28777263-28777282 Msa0158890:intron 25.0%
! AATGCTATTGAATACCAATA+AGG + chr1_4:28777629-28777648 None:intergenic 25.0%
! CAAACTGAAACTAATTTCAT+AGG + chr1_4:28777789-28777808 None:intergenic 25.0%
! CATTATATTGAACTATATGC+TGG + chr1_4:28778367-28778386 None:intergenic 25.0%
! CAGCATATAGTTCAATATAA+TGG - chr1_4:28778365-28778384 Msa0158890:CDS 25.0%
! TTACATGATTACTTGGTATA+AGG + chr1_4:28778453-28778472 None:intergenic 25.0%
ATTTCTTGTCAGAGACAATT+GGG + chr1_4:28767917-28767936 None:intergenic 30.0%
TATTTCTTGTCAGAGACAAT+TGG + chr1_4:28767918-28767937 None:intergenic 30.0%
GAAAATGTCAGAGACTAATT+TGG + chr1_4:28767944-28767963 None:intergenic 30.0%
GAAGTATGAGGGAATTATTT+GGG - chr1_4:28768003-28768022 Msa0158890:intron 30.0%
AAGTATGAGGGAATTATTTG+GGG - chr1_4:28768004-28768023 Msa0158890:intron 30.0%
TTGTTATCTCAGGTTAATGT+TGG - chr1_4:28768360-28768379 Msa0158890:CDS 30.0%
ACAAATAGATGCAAAAGGTT+AGG + chr1_4:28768388-28768407 None:intergenic 30.0%
CAACAACAAATAGATGCAAA+AGG + chr1_4:28768393-28768412 None:intergenic 30.0%
TTGGACTCTAATTGTTTAAC+TGG - chr1_4:28768640-28768659 Msa0158890:intron 30.0%
AAAAAGAGGTCCATATTAGA+CGG + chr1_4:28768711-28768730 None:intergenic 30.0%
TAAGTTAACAAAACTGAAGC+GGG + chr1_4:28768775-28768794 None:intergenic 30.0%
CTAAGTTAACAAAACTGAAG+CGG + chr1_4:28768776-28768795 None:intergenic 30.0%
ATCAAAATCTGAAAAGTGGT+TGG + chr1_4:28768876-28768895 None:intergenic 30.0%
GGTTATCAAAATCTGAAAAG+TGG + chr1_4:28768880-28768899 None:intergenic 30.0%
GAAATCAGGTTATCAAAATC+CGG + chr1_4:28769025-28769044 None:intergenic 30.0%
!!! CAAAGTTTTTAGCAGAAATC+AGG + chr1_4:28769039-28769058 None:intergenic 30.0%
!!! TGTTTTGACATGGTTGAATA+GGG + chr1_4:28769136-28769155 None:intergenic 30.0%
!!! TTGTTTTGACATGGTTGAAT+AGG + chr1_4:28769137-28769156 None:intergenic 30.0%
!!! GTTTTCATCTTGTTTTGACA+TGG + chr1_4:28769146-28769165 None:intergenic 30.0%
! GCTTTAAGCTTTAATACTCA+CGG + chr1_4:28769295-28769314 None:intergenic 30.0%
AAAGCTTGAATCTCTAACTT+AGG - chr1_4:28769310-28769329 Msa0158890:intron 30.0%
TACTACACTAGGTAATTAAC+CGG + chr1_4:28769458-28769477 None:intergenic 30.0%
TTCCTAAAACACAGATTCTA+TGG - chr1_4:28769714-28769733 Msa0158890:intron 30.0%
! TTCCATAGAATCTGTGTTTT+AGG + chr1_4:28769719-28769738 None:intergenic 30.0%
AACACAGATTCTATGGAAAT+AGG - chr1_4:28769721-28769740 Msa0158890:intron 30.0%
TTCTATGGAAATAGGAACAT+AGG - chr1_4:28769729-28769748 Msa0158890:intron 30.0%
TCTATGGAAATAGGAACATA+GGG - chr1_4:28769730-28769749 Msa0158890:intron 30.0%
! GGTGAATATTCTGATAGTTT+TGG + chr1_4:28769865-28769884 None:intergenic 30.0%
AGCAATGTATCATGTATACT+GGG + chr1_4:28769886-28769905 None:intergenic 30.0%
AATCATACAAGCTGAAAGTA+GGG + chr1_4:28769970-28769989 None:intergenic 30.0%
AAATCATACAAGCTGAAAGT+AGG + chr1_4:28769971-28769990 None:intergenic 30.0%
!!! AGATGCATGTTTTAAAGAGA+AGG + chr1_4:28770019-28770038 None:intergenic 30.0%
!! TCTTTAAAACATGCATCTCT+TGG - chr1_4:28770021-28770040 Msa0158890:intron 30.0%
TTCACATGACTATTGATCAA+TGG - chr1_4:28770045-28770064 Msa0158890:intron 30.0%
! TGTTCTTTTGTTCTTTTTGC+AGG - chr1_4:28770208-28770227 Msa0158890:CDS 30.0%
AATATTACCCTGGAAAAGTA+TGG + chr1_4:28770254-28770273 None:intergenic 30.0%
CTGAATTTGTAATATTACCC+TGG + chr1_4:28770264-28770283 None:intergenic 30.0%
TGCTTAGAGTAGAATGTAAA+TGG + chr1_4:28770318-28770337 None:intergenic 30.0%
GGACAGAAATTTATCAATGA+GGG + chr1_4:28770406-28770425 None:intergenic 30.0%
AGGACAGAAATTTATCAATG+AGG + chr1_4:28770407-28770426 None:intergenic 30.0%
TTCCAAGAATTATGATAGCA+CGG + chr1_4:28770501-28770520 None:intergenic 30.0%
CATGTATTGCAAATATCCAA+CGG - chr1_4:28770586-28770605 Msa0158890:intron 30.0%
! CATATTTTCTTGCTTTCTAC+AGG - chr1_4:28770684-28770703 Msa0158890:intron 30.0%
! CCACTCTTAAGTTTTTCTTT+AGG + chr1_4:28771140-28771159 None:intergenic 30.0%
CCTAAAGAAAAACTTAAGAG+TGG - chr1_4:28771137-28771156 Msa0158890:intron 30.0%
CAAGTAAAACACTGTCTAAT+TGG + chr1_4:28771296-28771315 None:intergenic 30.0%
TTACTTGATCAACTAGTGTT+TGG - chr1_4:28771309-28771328 Msa0158890:intron 30.0%
TCAACTAGTGTTTGGATTTA+TGG - chr1_4:28771317-28771336 Msa0158890:intron 30.0%
!!! GTTTTTTCTGATATTCCTAG+AGG + chr1_4:28771355-28771374 None:intergenic 30.0%
!! GAGTAATAAGAAAGTGTTAG+AGG + chr1_4:28771377-28771396 None:intergenic 30.0%
TAATCATTCAAGCATACTCA+AGG + chr1_4:28771552-28771571 None:intergenic 30.0%
!! CATTAGAGTTTTATACAGCT+TGG - chr1_4:28771865-28771884 Msa0158890:intron 30.0%
TAACTCTCAAACTCTAATAG+TGG + chr1_4:28771964-28771983 None:intergenic 30.0%
! CTTTTAAATAACTGCTTGGT+GGG + chr1_4:28772442-28772461 None:intergenic 30.0%
! ACTTTTAAATAACTGCTTGG+TGG + chr1_4:28772443-28772462 None:intergenic 30.0%
CAAAATAAGGGGGATTAATA+TGG + chr1_4:28772476-28772495 None:intergenic 30.0%
!! CATATTAATCCCCCTTATTT+TGG - chr1_4:28772474-28772493 Msa0158890:intron 30.0%
ATTACCTTTCCCAAAATAAG+GGG + chr1_4:28772487-28772506 None:intergenic 30.0%
CAATTACCTTTCCCAAAATA+AGG + chr1_4:28772489-28772508 None:intergenic 30.0%
! TGATTTTTGCAACTATGATG+TGG - chr1_4:28772644-28772663 Msa0158890:intron 30.0%
AAAGAGTTCTTGTATAAGTG+GGG + chr1_4:28772779-28772798 None:intergenic 30.0%
CAAAGAGTTCTTGTATAAGT+GGG + chr1_4:28772780-28772799 None:intergenic 30.0%
CACTTATACAAGAACTCTTT+GGG - chr1_4:28772779-28772798 Msa0158890:intron 30.0%
GTGAATTTCATCAAAAGGTT+TGG + chr1_4:28772835-28772854 None:intergenic 30.0%
GAAATTCACACTTAGAAGAA+TGG - chr1_4:28772846-28772865 Msa0158890:intron 30.0%
!!! CACATGATAGCTTAGTTTTT+TGG + chr1_4:28772947-28772966 None:intergenic 30.0%
! AAAAATTGTAATGGAGGTGT+TGG + chr1_4:28772992-28773011 None:intergenic 30.0%
! CACCTCCATTACAATTTTTA+TGG - chr1_4:28772993-28773012 Msa0158890:intron 30.0%
AGCTATTATGTGAAAGCAAA+TGG - chr1_4:28773036-28773055 Msa0158890:intron 30.0%
CAAGTAATAGGCAATATGAT+TGG - chr1_4:28773104-28773123 Msa0158890:intron 30.0%
ATGATGCAACTAGATCAATT+TGG + chr1_4:28773291-28773310 None:intergenic 30.0%
! GTTCTACGTGAATCTTTTAA+AGG - chr1_4:28773476-28773495 Msa0158890:intron 30.0%
CTCAAACAAGCATAGAAAAT+AGG + chr1_4:28773507-28773526 None:intergenic 30.0%
! CAACAAAGACTTCTAGAAAA+AGG + chr1_4:28773619-28773638 None:intergenic 30.0%
TCACTTGCATCTATATTACA+TGG + chr1_4:28773809-28773828 None:intergenic 30.0%
GTAATATAGATGCAAGTGAA+AGG - chr1_4:28773810-28773829 Msa0158890:intron 30.0%
!! GCACTTCCATATTTTTAAAG+AGG + chr1_4:28773907-28773926 None:intergenic 30.0%
TGATGATAAATTTCCAAGAG+AGG - chr1_4:28773928-28773947 Msa0158890:intron 30.0%
!! TTTGTTAATGGGTTAGTTAG+TGG - chr1_4:28773990-28774009 Msa0158890:intron 30.0%
!! TTGTTAATGGGTTAGTTAGT+GGG - chr1_4:28773991-28774010 Msa0158890:intron 30.0%
!!! CGGATTTTTTAAGGGTATAT+TGG - chr1_4:28774229-28774248 Msa0158890:intron 30.0%
ATTCCAAAGAGAGATTAAGT+TGG - chr1_4:28774254-28774273 Msa0158890:intron 30.0%
AAATAAGGAAGAGAGATTAG+GGG - chr1_4:28774328-28774347 Msa0158890:intron 30.0%
CAAAGTCTCTTGAATACTTT+GGG - chr1_4:28774548-28774567 Msa0158890:intron 30.0%
! GGATTTTTCACATTGTAAAC+TGG - chr1_4:28774569-28774588 Msa0158890:intron 30.0%
CTAGTCTAGAAGAAGAATTA+AGG + chr1_4:28774602-28774621 None:intergenic 30.0%
ATATATATGAATAAGGCCGA+GGG + chr1_4:28774693-28774712 None:intergenic 30.0%
TATATATATGAATAAGGCCG+AGG + chr1_4:28774694-28774713 None:intergenic 30.0%
TATGTGCATAAAGGAATGTT+GGG - chr1_4:28774924-28774943 Msa0158890:intron 30.0%
ATTAGAATTGTTTGTGCTCA+TGG - chr1_4:28775153-28775172 Msa0158890:intron 30.0%
! TATACATTTGCCCTTGTTAT+TGG - chr1_4:28775180-28775199 Msa0158890:intron 30.0%
AACAGGTTTACCAATAACAA+GGG + chr1_4:28775193-28775212 None:intergenic 30.0%
AAACAGGTTTACCAATAACA+AGG + chr1_4:28775194-28775213 None:intergenic 30.0%
CCCAAAAAAAGACATAAAAC+AGG + chr1_4:28775210-28775229 None:intergenic 30.0%
TTATTTGCCTGACATATACT+AGG - chr1_4:28775259-28775278 Msa0158890:intron 30.0%
CGTTAAACATGAGTTGTAAT+AGG - chr1_4:28775584-28775603 Msa0158890:intron 30.0%
! GCTTCAGTATTTTATCATCA+AGG - chr1_4:28775691-28775710 Msa0158890:intron 30.0%
TTAATCAAATATCATCCTGC+AGG - chr1_4:28775734-28775753 Msa0158890:CDS 30.0%
!! GCTTGAGTTTGTTTACATTT+TGG - chr1_4:28775855-28775874 Msa0158890:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr1_4:28776442-28776461 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG + chr1_4:28776043-28776062 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG + chr1_4:28776044-28776063 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG + chr1_4:28776167-28776186 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG + chr1_4:28776302-28776321 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr1_4:28776442-28776461 Msa0158890:intron 30.0%
! TTACAAGGTCACAATTTTGT+AGG - chr1_4:28776457-28776476 Msa0158890:intron 30.0%
! TACAAGGTCACAATTTTGTA+GGG - chr1_4:28776458-28776477 Msa0158890:intron 30.0%
CACATTTACAAATTGATGTC+GGG + chr1_4:28776564-28776583 None:intergenic 30.0%
GCACATTTACAAATTGATGT+CGG + chr1_4:28776565-28776584 None:intergenic 30.0%
!! TCTTGATTTGCTCACTTTAT+AGG - chr1_4:28776749-28776768 Msa0158890:intron 30.0%
TTTATAGGAGCCAGATATAA+TGG - chr1_4:28776764-28776783 Msa0158890:intron 30.0%
!!! TAACTGCTCTATTTTTATGG+GGG - chr1_4:28776816-28776835 Msa0158890:intron 30.0%
! CTGTTTTACACTTTCAATGT+TGG + chr1_4:28776873-28776892 None:intergenic 30.0%
! CAACATTGAAAGTGTAAAAC+AGG - chr1_4:28776871-28776890 Msa0158890:intron 30.0%
! TGAAAGTGTAAAACAGGAAA+AGG - chr1_4:28776877-28776896 Msa0158890:intron 30.0%
TTCCAAATGTAAGTAGTAAG+GGG - chr1_4:28777020-28777039 Msa0158890:intron 30.0%
AGGAGTTCATTAATCTGAAA+AGG - chr1_4:28777071-28777090 Msa0158890:intron 30.0%
GGAGTTCATTAATCTGAAAA+GGG - chr1_4:28777072-28777091 Msa0158890:intron 30.0%
GAGTTCATTAATCTGAAAAG+GGG - chr1_4:28777073-28777092 Msa0158890:intron 30.0%
AGTTCATTAATCTGAAAAGG+GGG - chr1_4:28777074-28777093 Msa0158890:intron 30.0%
GTTAGGTTAGTAAATCAGTT+AGG - chr1_4:28777298-28777317 Msa0158890:intron 30.0%
CCAAATCATAAGCATATGAA+AGG + chr1_4:28777431-28777450 None:intergenic 30.0%
CCTTTCATATGCTTATGATT+TGG - chr1_4:28777428-28777447 Msa0158890:intron 30.0%
!! GAATTATGTTGGTAATGAGA+GGG + chr1_4:28777464-28777483 None:intergenic 30.0%
!! GTAACTAACATTGACTTTCA+TGG - chr1_4:28777579-28777598 Msa0158890:intron 30.0%
TTGAGAAAGTAGTAAGTAAC+TGG + chr1_4:28777757-28777776 None:intergenic 30.0%
TTGGAGATAAGATCAAATGA+AGG + chr1_4:28777858-28777877 None:intergenic 30.0%
AAGACATGAAAACATGTGTT+TGG + chr1_4:28777877-28777896 None:intergenic 30.0%
TCAGAAAACATTACCAGTAA+TGG - chr1_4:28777897-28777916 Msa0158890:intron 30.0%
ATTAGATGTGTTGCAATACA+AGG + chr1_4:28777979-28777998 None:intergenic 30.0%
! ACAATAATCTACAAGGTGTT+CGG + chr1_4:28778058-28778077 None:intergenic 30.0%
!! AAGAGTGTTAACAATTTGCT+TGG - chr1_4:28778234-28778253 Msa0158890:CDS 30.0%
!! ATACTAATTTTGGCAACTCA+TGG + chr1_4:28778274-28778293 None:intergenic 30.0%
!! GTACAAGAGCATACTAATTT+TGG + chr1_4:28778284-28778303 None:intergenic 30.0%
CTCTGATTTCTATTCACTTA+TGG - chr1_4:28778404-28778423 Msa0158890:CDS 30.0%
TGATTTCTATTCACTTATGG+TGG - chr1_4:28778407-28778426 Msa0158890:CDS 30.0%
!!! AGCCATTTTTAAGAGTACAA+GGG + chr1_4:28778481-28778500 None:intergenic 30.0%
!!! TAGCCATTTTTAAGAGTACA+AGG + chr1_4:28778482-28778501 None:intergenic 30.0%
!! GTATGATGGATGATGGTATT+TGG + chr1_4:28767436-28767455 None:intergenic 35.0%
!! AATGGTAGTATGATGGATGA+TGG + chr1_4:28767443-28767462 None:intergenic 35.0%
CGAAATGAATGGTAGTATGA+TGG + chr1_4:28767450-28767469 None:intergenic 35.0%
AACTAGGCAGACTGTAATAA+TGG + chr1_4:28767510-28767529 None:intergenic 35.0%
AGTGGAAGTAAAGAGTCAAA+AGG - chr1_4:28767746-28767765 Msa0158890:three_prime_UTR 35.0%
!! AAAAGCATTGATAGAGAGAG+AGG + chr1_4:28767831-28767850 None:intergenic 35.0%
TCGAATATATTTATCGCGCA+TGG - chr1_4:28767891-28767910 Msa0158890:exon 35.0%
! ACTCAGAACAAATTAGTCTG+CGG - chr1_4:28767966-28767985 Msa0158890:intron 35.0%
! GGAAGTATGAGGGAATTATT+TGG - chr1_4:28768002-28768021 Msa0158890:intron 35.0%
ATTGGGATTCAGTGACTTTA+AGG - chr1_4:28768027-28768046 Msa0158890:intron 35.0%
AGATTCACTGACATTAGAGT+GGG + chr1_4:28768074-28768093 None:intergenic 35.0%
GTGAATCTCAATCCCTAATT+TGG - chr1_4:28768086-28768105 Msa0158890:CDS 35.0%
GATAATTGTGAGGACCAAAT+TGG - chr1_4:28768145-28768164 Msa0158890:intron 35.0%
TATGAGGGATAACTTAACAG+TGG - chr1_4:28768212-28768231 Msa0158890:intron 35.0%
!! ATTTGTAGCTCTGATTTCTG+CGG - chr1_4:28768256-28768275 Msa0158890:intron 35.0%
TACTGCATGGTTTATCTTGT+AGG - chr1_4:28768459-28768478 Msa0158890:intron 35.0%
ACTGCATGGTTTATCTTGTA+GGG - chr1_4:28768460-28768479 Msa0158890:intron 35.0%
CAAGCACATCAATCAAATCT+AGG + chr1_4:28768617-28768636 None:intergenic 35.0%
TTGATTGATGTGCTTGTGTT+TGG - chr1_4:28768621-28768640 Msa0158890:intron 35.0%
ATTATAGGGTCCGTCTAATA+TGG - chr1_4:28768698-28768717 Msa0158890:intron 35.0%
TAACTGATACAAGACAGCTT+CGG + chr1_4:28768939-28768958 None:intergenic 35.0%
GATCATATCCAAACACTTTC+CGG - chr1_4:28769003-28769022 Msa0158890:intron 35.0%
!! ATCAAAATCCGGAAAGTGTT+TGG + chr1_4:28769014-28769033 None:intergenic 35.0%
! TTAAACCCTGTTGAGCTTTT+AGG - chr1_4:28769171-28769190 Msa0158890:intron 35.0%
!!! TTGAGCTTTTAGGTTGGAAA+AGG - chr1_4:28769181-28769200 Msa0158890:intron 35.0%
GGTTAATTACCTAGTGTAGT+AGG - chr1_4:28769457-28769476 Msa0158890:intron 35.0%
TTAGTTCAACCTACTACACT+AGG + chr1_4:28769469-28769488 None:intergenic 35.0%
! GTGTAGTAGGTTGAACTAAA+AGG - chr1_4:28769470-28769489 Msa0158890:intron 35.0%
AATATGCACCCTTTGCAAAA+AGG + chr1_4:28769508-28769527 None:intergenic 35.0%
!! TTTTGCAAAGGGTGCATATT+AGG - chr1_4:28769508-28769527 Msa0158890:intron 35.0%
! TTTGCAAAGGGTGCATATTA+GGG - chr1_4:28769509-28769528 Msa0158890:intron 35.0%
! CTACTAAGCTTTATCATGCT+AGG - chr1_4:28769654-28769673 Msa0158890:intron 35.0%
! TAAGCTTTATCATGCTAGGT+GGG - chr1_4:28769658-28769677 Msa0158890:intron 35.0%
CTATGGAAATAGGAACATAG+GGG - chr1_4:28769731-28769750 Msa0158890:intron 35.0%
TATGGAAATAGGAACATAGG+GGG - chr1_4:28769732-28769751 Msa0158890:intron 35.0%
CAGCAATGTATCATGTATAC+TGG + chr1_4:28769887-28769906 None:intergenic 35.0%
! TTCTTACACCATACTTTTCC+AGG - chr1_4:28770243-28770262 Msa0158890:CDS 35.0%
! TCTTACACCATACTTTTCCA+GGG - chr1_4:28770244-28770263 Msa0158890:CDS 35.0%
CTGTAATAAATTCTTGGGGT+TGG + chr1_4:28770289-28770308 None:intergenic 35.0%
CAACCCCAAGAATTTATTAC+AGG - chr1_4:28770287-28770306 Msa0158890:intron 35.0%
GGTAGTAAGATATAGAGAGA+TGG + chr1_4:28770469-28770488 None:intergenic 35.0%
AATTAAAGACCATAAGCCGT+TGG + chr1_4:28770605-28770624 None:intergenic 35.0%
AGTTGGCATACAGCAAAATA+TGG + chr1_4:28770715-28770734 None:intergenic 35.0%
ATGCCAACTACATTATCAAG+TGG - chr1_4:28770726-28770745 Msa0158890:intron 35.0%
!! ACACCACTTGATAATGTAGT+TGG + chr1_4:28770732-28770751 None:intergenic 35.0%
GAATCTTCTCGTAATCTTTG+CGG - chr1_4:28771194-28771213 Msa0158890:intron 35.0%
GTTTCTTAGTCATTGCCATT+AGG - chr1_4:28771582-28771601 Msa0158890:intron 35.0%
AGTCATTGCCATTAGGATTA+TGG - chr1_4:28771589-28771608 Msa0158890:intron 35.0%
AGTACATTTGGAAAGAATCC+TGG + chr1_4:28771618-28771637 None:intergenic 35.0%
! ACGTTTGGATGTTTGTTAAC+TGG + chr1_4:28771663-28771682 None:intergenic 35.0%
GCACAAAAAAATTGTCACTC+TGG + chr1_4:28771733-28771752 None:intergenic 35.0%
!!! AGTGACAATTTTTTTGTGCG+TGG - chr1_4:28771734-28771753 Msa0158890:intron 35.0%
GAATCAGCTACAAACTGATA+AGG - chr1_4:28771805-28771824 Msa0158890:intron 35.0%
TATACAGCTTGGAAACTGTT+AGG - chr1_4:28771876-28771895 Msa0158890:intron 35.0%
!! AATTTCCAGCTTTTCAAGCT+AGG - chr1_4:28771934-28771953 Msa0158890:intron 35.0%
CAAGTTCCTATCATTTCAAC+TGG - chr1_4:28772221-28772240 Msa0158890:intron 35.0%
TCCTATCATTTCAACTGGTT+TGG - chr1_4:28772226-28772245 Msa0158890:intron 35.0%
ACCAAACCAGTTGAAATGAT+AGG + chr1_4:28772230-28772249 None:intergenic 35.0%
TTACCTTTCCCAAAATAAGG+GGG + chr1_4:28772486-28772505 None:intergenic 35.0%
CATGAGTCATCTCAAAAGTT+AGG - chr1_4:28772714-28772733 Msa0158890:intron 35.0%
CCAAAGAGTTCTTGTATAAG+TGG + chr1_4:28772781-28772800 None:intergenic 35.0%
CCACTTATACAAGAACTCTT+TGG - chr1_4:28772778-28772797 Msa0158890:intron 35.0%
CAATAAGTGAGCCAATTTAC+TGG - chr1_4:28773166-28773185 Msa0158890:intron 35.0%
AAAGAAGAAAGTAGCAAGGT+AGG + chr1_4:28773222-28773241 None:intergenic 35.0%
CAAGAAAGAAGAAAGTAGCA+AGG + chr1_4:28773226-28773245 None:intergenic 35.0%
ATATATGGAGTTGTAAACCC+TGG - chr1_4:28773326-28773345 Msa0158890:intron 35.0%
TGACACAATGGTCAAATATG+AGG + chr1_4:28773712-28773731 None:intergenic 35.0%
! AATTTCCAAGAGAGGTTGAT+AGG - chr1_4:28773936-28773955 Msa0158890:intron 35.0%
TCAACATCACATTCTCGTTT+GGG - chr1_4:28774136-28774155 Msa0158890:intron 35.0%
CTAATCACATACGCAAACAT+GGG + chr1_4:28774169-28774188 None:intergenic 35.0%
CATGTTTGCGTATGTGATTA+GGG - chr1_4:28774168-28774187 Msa0158890:intron 35.0%
TAGCCAACTTAATCTCTCTT+TGG + chr1_4:28774260-28774279 None:intergenic 35.0%
AATAAGGAAGAGAGATTAGG+GGG - chr1_4:28774329-28774348 Msa0158890:intron 35.0%
ACAAAGAAACCAAAGACCAA+TGG + chr1_4:28774367-28774386 None:intergenic 35.0%
! TTTTAGATGAGACCGAATGA+TGG + chr1_4:28774453-28774472 None:intergenic 35.0%
! CCAAAGTATTCAAGAGACTT+TGG + chr1_4:28774550-28774569 None:intergenic 35.0%
CCAAAGTCTCTTGAATACTT+TGG - chr1_4:28774547-28774566 Msa0158890:intron 35.0%
TATATATGAATAAGGCCGAG+GGG + chr1_4:28774692-28774711 None:intergenic 35.0%
ATCTATATACGGGATGGTAA+AGG + chr1_4:28774845-28774864 None:intergenic 35.0%
CTGTATATCTATATACGGGA+TGG + chr1_4:28774851-28774870 None:intergenic 35.0%
ACCAGAAAGTTTGTACGTTA+AGG + chr1_4:28774881-28774900 None:intergenic 35.0%
GTATGTGCATAAAGGAATGT+TGG - chr1_4:28774923-28774942 Msa0158890:intron 35.0%
TCGTATCATCACATTCACAA+TGG + chr1_4:28775080-28775099 None:intergenic 35.0%
TTAGACTCCTAGTATATGTC+AGG + chr1_4:28775269-28775288 None:intergenic 35.0%
! TTTTCTTGTAGCTATTGGAC+TGG - chr1_4:28775815-28775834 Msa0158890:intron 35.0%
TTTCTTGTAGCTATTGGACT+GGG - chr1_4:28775816-28775835 Msa0158890:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr1_4:28775983-28776002 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr1_4:28775984-28776003 None:intergenic 35.0%
! TCTAAAGTGAGCACTAACTT+TGG - chr1_4:28776633-28776652 Msa0158890:intron 35.0%
TCCAAATGTAAGTAGTAAGG+GGG - chr1_4:28777021-28777040 Msa0158890:intron 35.0%
AATGAGCTAGAAGATTTGAC+TGG - chr1_4:28777045-28777064 Msa0158890:intron 35.0%
CTAGAAGATTTGACTGGATT+AGG - chr1_4:28777051-28777070 Msa0158890:intron 35.0%
AGTTATGTCATCAGTGTTAC+TGG - chr1_4:28777114-28777133 Msa0158890:intron 35.0%
AAAATGGGAGTTTACAACAC+TGG - chr1_4:28777157-28777176 Msa0158890:intron 35.0%
AAGGATGCTATTCTTAGGAT+TGG - chr1_4:28777268-28777287 Msa0158890:intron 35.0%
! ATGCTATTCTTAGGATTGGT+TGG - chr1_4:28777272-28777291 Msa0158890:intron 35.0%
!! TTAGGATTGGTTGGTTAGTT+AGG - chr1_4:28777281-28777300 Msa0158890:intron 35.0%
!! CGAATTATGTTGGTAATGAG+AGG + chr1_4:28777465-28777484 None:intergenic 35.0%
CCTTCTCTAACGAATTATGT+TGG + chr1_4:28777475-28777494 None:intergenic 35.0%
CCAACATAATTCGTTAGAGA+AGG - chr1_4:28777472-28777491 Msa0158890:intron 35.0%
GCACTAGTGTGCAATTTAAT+TGG - chr1_4:28777506-28777525 Msa0158890:CDS 35.0%
TTAGTTACCATAACTCATGC+TGG + chr1_4:28777567-28777586 None:intergenic 35.0%
ACTTCTTCATCTGACCTTAT+TGG - chr1_4:28777612-28777631 Msa0158890:intron 35.0%
TATTCAATAGCATTGCTGTC+CGG - chr1_4:28777635-28777654 Msa0158890:intron 35.0%
CAGAGATAATTGAAAGACTC+CGG + chr1_4:28777657-28777676 None:intergenic 35.0%
AGTCTTTCAATTATCTCTGG+TGG - chr1_4:28777658-28777677 Msa0158890:intron 35.0%
AACATTACCAGTAATGGTAG+CGG - chr1_4:28777903-28777922 Msa0158890:intron 35.0%
TATTGCAACACATCTAATCC+AGG - chr1_4:28777981-28778000 Msa0158890:intron 35.0%
! CAATAATCTACAAGGTGTTC+GGG + chr1_4:28778057-28778076 None:intergenic 35.0%
GAACACCTTGTAGATTATTG+TGG - chr1_4:28778057-28778076 Msa0158890:intron 35.0%
AGAGTCCACAATAATCTACA+AGG + chr1_4:28778065-28778084 None:intergenic 35.0%
CTCTTGTACATTGTTCATTC+TGG - chr1_4:28778295-28778314 Msa0158890:CDS 35.0%
AAGATCGGAAACAATATGCT+GGG + chr1_4:28778329-28778348 None:intergenic 35.0%
AAAGATCGGAAACAATATGC+TGG + chr1_4:28778330-28778349 None:intergenic 35.0%
!! GACGGACTGAAAATAAAGAT+CGG + chr1_4:28778344-28778363 None:intergenic 35.0%
TATTGAACTATATGCTGGGA+CGG + chr1_4:28778362-28778381 None:intergenic 35.0%
GTCCCTTGTACTCTTAAAAA+TGG - chr1_4:28778476-28778495 Msa0158890:exon 35.0%
TCAGAAAAGCCAATAATGAG+TGG + chr1_4:28778514-28778533 None:intergenic 35.0%
! TGATGGATGATGGTATTTGG+TGG + chr1_4:28767433-28767452 None:intergenic 40.0%
TACTACCATTCATTTCGCGT+TGG - chr1_4:28767453-28767472 Msa0158890:three_prime_UTR 40.0%
TAGAGTGAGGGATTTAATGG+CGG + chr1_4:28767663-28767682 None:intergenic 40.0%
AACTGATTGGATTGAGCACA+TGG + chr1_4:28767713-28767732 None:intergenic 40.0%
ATGTGCTCAATCCAATCAGT+TGG - chr1_4:28767712-28767731 Msa0158890:three_prime_UTR 40.0%
AAGAGTCAAAAGGATTGAGC+TGG - chr1_4:28767756-28767775 Msa0158890:three_prime_UTR 40.0%
AGAGTCAAAAGGATTGAGCT+GGG - chr1_4:28767757-28767776 Msa0158890:three_prime_UTR 40.0%
! AACCCATTTTGAGCTTTGCT+AGG - chr1_4:28767783-28767802 Msa0158890:three_prime_UTR 40.0%
! ACCCATTTTGAGCTTTGCTA+GGG - chr1_4:28767784-28767803 Msa0158890:three_prime_UTR 40.0%
!! GTCTGCGGACTAATTTGTTA+TGG - chr1_4:28767981-28768000 Msa0158890:intron 40.0%
TGAGGGAATTATTTGGGGAT+TGG - chr1_4:28768009-28768028 Msa0158890:intron 40.0%
GAGGGAATTATTTGGGGATT+GGG - chr1_4:28768010-28768029 Msa0158890:intron 40.0%
GAGATTCACTGACATTAGAG+TGG + chr1_4:28768075-28768094 None:intergenic 40.0%
TGGTCCTCACAATTATCTTG+CGG + chr1_4:28768142-28768161 None:intergenic 40.0%
! GTGGTGTTTGTGTTCTTTTG+AGG - chr1_4:28768231-28768250 Msa0158890:intron 40.0%
GGATTAACATGTCCTAGTCT+TGG - chr1_4:28768287-28768306 Msa0158890:intron 40.0%
! AATTCCAAACGGCCCAATTT+TGG + chr1_4:28768339-28768358 None:intergenic 40.0%
GGTGTCTAAGTGAATGTTCT+GGG - chr1_4:28768433-28768452 Msa0158890:intron 40.0%
CATGGTTTATCTTGTAGGGT+TGG - chr1_4:28768464-28768483 Msa0158890:intron 40.0%
! TGCTTGGACCCTTTAAAAAG+AGG + chr1_4:28768725-28768744 None:intergenic 40.0%
!! CTTTTTAAAGGGTCCAAGCA+TGG - chr1_4:28768725-28768744 Msa0158890:intron 40.0%
CTATGCGAATTGTATTGGAG+AGG + chr1_4:28768752-28768771 None:intergenic 40.0%
CACACTACATGTAGAAGAAG+CGG + chr1_4:28768822-28768841 None:intergenic 40.0%
TCCAACCTAAAAGCTCAACA+GGG + chr1_4:28769179-28769198 None:intergenic 40.0%
TTCCAACCTAAAAGCTCAAC+AGG + chr1_4:28769180-28769199 None:intergenic 40.0%
GGAAAAGGCGAAGTAATGAA+TGG - chr1_4:28769196-28769215 Msa0158890:intron 40.0%
TGTTCACCTGTATGAAGCAA+AGG - chr1_4:28769393-28769412 Msa0158890:intron 40.0%
AGGTTGAACTAAAAGGTCCA+TGG - chr1_4:28769477-28769496 Msa0158890:intron 40.0%
TTTGCAAAAAGGTTCAGCCA+TGG + chr1_4:28769497-28769516 None:intergenic 40.0%
! ATGGCTGAACCTTTTTGCAA+AGG - chr1_4:28769496-28769515 Msa0158890:intron 40.0%
! TGGCTGAACCTTTTTGCAAA+GGG - chr1_4:28769497-28769516 Msa0158890:intron 40.0%
! TTGCAAAGGGTGCATATTAG+GGG - chr1_4:28769510-28769529 Msa0158890:intron 40.0%
! CTAAGCTTTATCATGCTAGG+TGG - chr1_4:28769657-28769676 Msa0158890:intron 40.0%
!!! TCTGATAGTTTTGGAGTGAG+AGG + chr1_4:28769856-28769875 None:intergenic 40.0%
GCATAAGAAAGTGAGGTTCA+TGG + chr1_4:28769943-28769962 None:intergenic 40.0%
CAAGAATTATGATAGCACGG+CGG + chr1_4:28770498-28770517 None:intergenic 40.0%
TGCAAATATCCAACGGCTTA+TGG - chr1_4:28770593-28770612 Msa0158890:intron 40.0%
!! AACTTAAGAGTGGCTTGCTT+AGG - chr1_4:28771147-28771166 Msa0158890:intron 40.0%
CTTGGGAGTAAGAAGATGAA+AGG - chr1_4:28771172-28771191 Msa0158890:intron 40.0%
ACTTGAAGCTCTCGAACTTT+CGG + chr1_4:28771399-28771418 None:intergenic 40.0%
CCTGGTTTCCATAATCCTAA+TGG + chr1_4:28771600-28771619 None:intergenic 40.0%
CCATTAGGATTATGGAAACC+AGG - chr1_4:28771597-28771616 Msa0158890:intron 40.0%
TTCTCTGCTACTGTTACGTT+TGG + chr1_4:28771678-28771697 None:intergenic 40.0%
AAACGTAACAGTAGCAGAGA+AGG - chr1_4:28771677-28771696 Msa0158890:intron 40.0%
AACGTAACAGTAGCAGAGAA+GGG - chr1_4:28771678-28771697 Msa0158890:intron 40.0%
!! TGTTTGATTTGATCGATCGG+AGG + chr1_4:28771847-28771866 None:intergenic 40.0%
AAACTGTTAGGACGAACCTT+TGG - chr1_4:28771888-28771907 Msa0158890:intron 40.0%
AAAGCTGCCAACTATACCAA+AGG + chr1_4:28771907-28771926 None:intergenic 40.0%
!!! AATCCCCCTTATTTTGGGAA+AGG - chr1_4:28772480-28772499 Msa0158890:intron 40.0%
! ATATCATGAAAGTGCGTGAG+TGG - chr1_4:28772739-28772758 Msa0158890:intron 40.0%
! ATTTCAGAGTTTGCTCCTTG+TGG + chr1_4:28772881-28772900 None:intergenic 40.0%
! ATCATGTGAAAGCACATCGA+TGG - chr1_4:28772959-28772978 Msa0158890:intron 40.0%
ATAGGCAATATGATTGGGCA+AGG - chr1_4:28773110-28773129 Msa0158890:intron 40.0%
TAGGCAATATGATTGGGCAA+GGG - chr1_4:28773111-28773130 Msa0158890:intron 40.0%
AGAAATGCATACTACAGCCA+GGG + chr1_4:28773346-28773365 None:intergenic 40.0%
! TTTCATTGCTTTGAATGGGC+AGG - chr1_4:28773454-28773473 Msa0158890:intron 40.0%
CCAACTTTCACTTGACACAA+TGG + chr1_4:28773724-28773743 None:intergenic 40.0%
CCATTGTGTCAAGTGAAAGT+TGG - chr1_4:28773721-28773740 Msa0158890:intron 40.0%
TAAAGCCTATCAACCTCTCT+TGG + chr1_4:28773944-28773963 None:intergenic 40.0%
GTCAACATCACATTCTCGTT+TGG - chr1_4:28774135-28774154 Msa0158890:intron 40.0%
CAACATCACATTCTCGTTTG+GGG - chr1_4:28774137-28774156 Msa0158890:intron 40.0%
CCTAATCACATACGCAAACA+TGG + chr1_4:28774170-28774189 None:intergenic 40.0%
CCATGTTTGCGTATGTGATT+AGG - chr1_4:28774167-28774186 Msa0158890:intron 40.0%
AGGCACATGGCCTATAAATA+AGG - chr1_4:28774313-28774332 Msa0158890:intron 40.0%
! GTATAGACTTGTGGCCTTTT+AGG - chr1_4:28774512-28774531 Msa0158890:intron 40.0%
!!! TTGTGGCCTTTTAGGATTTG+AGG - chr1_4:28774520-28774539 Msa0158890:intron 40.0%
GGACTTCCTCAAATCCTAAA+AGG + chr1_4:28774529-28774548 None:intergenic 40.0%
ATATATGAATAAGGCCGAGG+GGG + chr1_4:28774691-28774710 None:intergenic 40.0%
GCCTTAACGTACAAACTTTC+TGG - chr1_4:28774877-28774896 Msa0158890:intron 40.0%
GAAGCAGCAATGTAGCATAT+AGG + chr1_4:28774961-28774980 None:intergenic 40.0%
! AGGAATGTCTTGCTCTCTTT+TGG - chr1_4:28775308-28775327 Msa0158890:CDS 40.0%
! AGAAACCGTAAGCTTTTCTC+AGG - chr1_4:28775458-28775477 Msa0158890:intron 40.0%
! GAAACCGTAAGCTTTTCTCA+GGG - chr1_4:28775459-28775478 Msa0158890:intron 40.0%
TGATCCCTGAGAAAAGCTTA+CGG + chr1_4:28775466-28775485 None:intergenic 40.0%
!!! CAGTGCATTTTTTCTTAGCC+TGG - chr1_4:28775484-28775503 Msa0158890:intron 40.0%
!!! GCATTTTTTCTTAGCCTGGT+AGG - chr1_4:28775488-28775507 Msa0158890:intron 40.0%
ATGTAGTCAAGTCTATGCAG+TGG - chr1_4:28775629-28775648 Msa0158890:intron 40.0%
TGTAGTCAAGTCTATGCAGT+GGG - chr1_4:28775630-28775649 Msa0158890:intron 40.0%
GTAAACAAACTCAAGCATGC+TGG + chr1_4:28775851-28775870 None:intergenic 40.0%
!! CTGGTGCTGTAGTTTACATA+CGG - chr1_4:28776599-28776618 Msa0158890:intron 40.0%
!! TGCTCACTTTAGAGTAGTTG+TGG + chr1_4:28776626-28776645 None:intergenic 40.0%
!! TTTATGGGGGTGTTTCTGTT+AGG - chr1_4:28776829-28776848 Msa0158890:intron 40.0%
ATAACAGCCACTAACCAAAC+AGG + chr1_4:28776933-28776952 None:intergenic 40.0%
GTGGCAGTTGTGTTAGTTAA+AGG - chr1_4:28776995-28777014 Msa0158890:intron 40.0%
CCAAATGTAAGTAGTAAGGG+GGG - chr1_4:28777022-28777041 Msa0158890:intron 40.0%
!! TTCGTTAGAGAAGGTATTCG+AGG - chr1_4:28777481-28777500 Msa0158890:intron 40.0%
!! TCGTTAGAGAAGGTATTCGA+GGG - chr1_4:28777482-28777501 Msa0158890:intron 40.0%
AGAACATCCAGCATGAGTTA+TGG - chr1_4:28777557-28777576 Msa0158890:intron 40.0%
CGGAGTCTTTCAATTATCTC+TGG - chr1_4:28777655-28777674 Msa0158890:intron 40.0%
GTTTCAGTTTGCGACATAAG+AGG - chr1_4:28777798-28777817 Msa0158890:intron 40.0%
TCTATAACCGCTACCATTAC+TGG + chr1_4:28777913-28777932 None:intergenic 40.0%
ATTTGGAGAATCTGGGTTAC+TGG - chr1_4:28777948-28777967 Msa0158890:intron 40.0%
! TCATCATTGATTGTCGTCTG+TGG - chr1_4:28778163-28778182 Msa0158890:intron 40.0%
!! CTAATTTTGGCAACTCATGG+TGG + chr1_4:28778271-28778290 None:intergenic 40.0%
GGACTGCTTACATGATTACT+TGG + chr1_4:28778460-28778479 None:intergenic 40.0%
AGACATCCACCACTCATTAT+TGG - chr1_4:28778502-28778521 Msa0158890:five_prime_UTR 40.0%
GAAAAGCCAATAATGAGTGG+TGG + chr1_4:28778511-28778530 None:intergenic 40.0%
! GGATGATGGTATTTGGTGGT+GGG + chr1_4:28767429-28767448 None:intergenic 45.0%
! TGGATGATGGTATTTGGTGG+TGG + chr1_4:28767430-28767449 None:intergenic 45.0%
CAGTACCAACGCGAAATGAA+TGG + chr1_4:28767461-28767480 None:intergenic 45.0%
TGGCGTGAGGATGAGTAAAT+GGG + chr1_4:28767573-28767592 None:intergenic 45.0%
CGAGAGAATGAGGATGAATG+TGG + chr1_4:28767593-28767612 None:intergenic 45.0%
GGAAGAAGGGGAAAATAGAG+GGG + chr1_4:28767621-28767640 None:intergenic 45.0%
GGGAAGAAGGGGAAAATAGA+GGG + chr1_4:28767622-28767641 None:intergenic 45.0%
! ATTTAATGGCGGAGTGAGGA+TGG + chr1_4:28767652-28767671 None:intergenic 45.0%
GCGTAGAGTGAGGGATTTAA+TGG + chr1_4:28767666-28767685 None:intergenic 45.0%
GATTGAGCACATGGTCTGAA+GGG + chr1_4:28767704-28767723 None:intergenic 45.0%
GCTCAATCCAATCAGTTGGA+TGG - chr1_4:28767716-28767735 Msa0158890:three_prime_UTR 45.0%
TCCAATCAGTTGGATGGTAG+TGG - chr1_4:28767722-28767741 Msa0158890:three_prime_UTR 45.0%
ACCACTACCATCCAACTGAT+TGG + chr1_4:28767726-28767745 None:intergenic 45.0%
CCCCTAGCAAAGCTCAAAAT+GGG + chr1_4:28767788-28767807 None:intergenic 45.0%
! CCCATTTTGAGCTTTGCTAG+GGG - chr1_4:28767785-28767804 Msa0158890:three_prime_UTR 45.0%
! GGGATTCAGTGACTTTAAGG+CGG - chr1_4:28768030-28768049 Msa0158890:intron 45.0%
!! GGATTCAGTGACTTTAAGGC+GGG - chr1_4:28768031-28768050 Msa0158890:intron 45.0%
TAGGCCGCAAGATAATTGTG+AGG - chr1_4:28768135-28768154 Msa0158890:intron 45.0%
GTATCCAAAATTGGGCCGTT+TGG - chr1_4:28768332-28768351 Msa0158890:CDS 45.0%
GGGTGTCTAAGTGAATGTTC+TGG - chr1_4:28768432-28768451 Msa0158890:intron 45.0%
! ATGTTCTGGGTTCTACTGCA+TGG - chr1_4:28768446-28768465 Msa0158890:intron 45.0%
GTGTTGCGAAGCGAAGAAAT+TGG - chr1_4:28768486-28768505 Msa0158890:intron 45.0%
ATGTAGAAGAAGCGGTGGAA+AGG + chr1_4:28768814-28768833 None:intergenic 45.0%
ACTACATGTAGAAGAAGCGG+TGG + chr1_4:28768819-28768838 None:intergenic 45.0%
!! ACCCTGTTGAGCTTTTAGGT+TGG - chr1_4:28769175-28769194 Msa0158890:intron 45.0%
AGGCGAAGTAATGAATGGAG+TGG - chr1_4:28769201-28769220 Msa0158890:intron 45.0%
ATGTGCATGTGTTAGGGTAG+TGG - chr1_4:28769342-28769361 Msa0158890:intron 45.0%
AGGGAGATAGCAGTTGTGAA+AGG - chr1_4:28769368-28769387 Msa0158890:intron 45.0%
GGGAGATAGCAGTTGTGAAA+GGG - chr1_4:28769369-28769388 Msa0158890:intron 45.0%
AGTGAGGTTCATGGATCATG+CGG + chr1_4:28769934-28769953 None:intergenic 45.0%
GGGAGTTGCATAAGAAAGTG+AGG + chr1_4:28769950-28769969 None:intergenic 45.0%
CGCCGTGCTATCATAATTCT+TGG - chr1_4:28770496-28770515 Msa0158890:intron 45.0%
GACTATGAGAGCAACTGTGA+TGG + chr1_4:28770639-28770658 None:intergenic 45.0%
TCTAGCACTTGCAATGCAGT+TGG - chr1_4:28770851-28770870 Msa0158890:intron 45.0%
AGCAAGCTGCAGAATCAAAG+TGG + chr1_4:28770894-28770913 None:intergenic 45.0%
ACTTTGATTCTGCAGCTTGC+TGG - chr1_4:28770893-28770912 Msa0158890:intron 45.0%
!! AGTGGCTTGCTTAGGATCTT+GGG - chr1_4:28771155-28771174 Msa0158890:intron 45.0%
TGATTTGATCGATCGGAGGA+GGG + chr1_4:28771843-28771862 None:intergenic 45.0%
! TTGATTTGATCGATCGGAGG+AGG + chr1_4:28771844-28771863 None:intergenic 45.0%
GGACGAACCTTTGGTATAGT+TGG - chr1_4:28771897-28771916 Msa0158890:intron 45.0%
TGGTATAGTTGGCAGCTTTG+TGG - chr1_4:28771908-28771927 Msa0158890:intron 45.0%
! GTTAGCCTAGCTTGAAAAGC+TGG + chr1_4:28771942-28771961 None:intergenic 45.0%
GAAACCTAGCAGTAAGCTCA+TGG + chr1_4:28772582-28772601 None:intergenic 45.0%
ACACTTAGAAGAATGGGCCT+GGG - chr1_4:28772853-28772872 Msa0158890:intron 45.0%
CAGAAATGCATACTACAGCC+AGG + chr1_4:28773347-28773366 None:intergenic 45.0%
CGTATGTGATTAGGGTTCAC+AGG - chr1_4:28774176-28774195 Msa0158890:intron 45.0%
ATGTGATTAGGGTTCACAGG+AGG - chr1_4:28774179-28774198 Msa0158890:intron 45.0%
AGAGATTAGGGGGTTCACTT+AGG - chr1_4:28774339-28774358 Msa0158890:intron 45.0%
!! ACTTAGGTGCCATTGGTCTT+TGG - chr1_4:28774355-28774374 Msa0158890:intron 45.0%
!!! CCATTGGCTTTTGGTGTCAT+CGG + chr1_4:28774489-28774508 None:intergenic 45.0%
!!! CTATACGTGCCATTGGCTTT+TGG + chr1_4:28774498-28774517 None:intergenic 45.0%
CACAAGTCTATACGTGCCAT+TGG + chr1_4:28774505-28774524 None:intergenic 45.0%
CAATGGCACGTATAGACTTG+TGG - chr1_4:28774503-28774522 Msa0158890:intron 45.0%
!! TCACTTTCACTTTTCCCCCT+CGG - chr1_4:28774674-28774693 Msa0158890:intron 45.0%
!!! TTTTTGGGTGTTCAGCTGAC+AGG - chr1_4:28775222-28775241 Msa0158890:intron 45.0%
GAAGGAAGCAAATTCCTACC+AGG + chr1_4:28775505-28775524 None:intergenic 45.0%
! TATGCAGTGGGAGAAGGTTT+TGG - chr1_4:28775642-28775661 Msa0158890:intron 45.0%
ATATCATCCTGCAGGTACCT+TGG - chr1_4:28775742-28775761 Msa0158890:CDS 45.0%
! GACTTGCTCACTTGTATCCA+AGG + chr1_4:28775762-28775781 None:intergenic 45.0%
GGATACAAGTGAGCAAGTCA+AGG - chr1_4:28775763-28775782 Msa0158890:CDS 45.0%
CGTATGTAAACTACAGCACC+AGG + chr1_4:28776601-28776620 None:intergenic 45.0%
AACTTGGCATGAGTCCTGTT+TGG - chr1_4:28776916-28776935 Msa0158890:intron 45.0%
CATGAGTCCTGTTTGGTTAG+TGG - chr1_4:28776923-28776942 Msa0158890:intron 45.0%
TAACTAACACAACTGCCACG+CGG + chr1_4:28776994-28777013 None:intergenic 45.0%
CCCCCCTTACTACTTACATT+TGG + chr1_4:28777025-28777044 None:intergenic 45.0%
!! TTGGTAATGAGAGGGTGTCA+TGG + chr1_4:28777456-28777475 None:intergenic 45.0%
!! CGTTAGAGAAGGTATTCGAG+GGG - chr1_4:28777483-28777502 Msa0158890:intron 45.0%
!! GTTAGAGAAGGTATTCGAGG+GGG - chr1_4:28777484-28777503 Msa0158890:intron 45.0%
!! TGCGTTGGCATTTTCTTCAC+GGG + chr1_4:28777701-28777720 None:intergenic 45.0%
!! GTGCGTTGGCATTTTCTTCA+CGG + chr1_4:28777702-28777721 None:intergenic 45.0%
TGCAACTAGTATGAGTGCGT+TGG + chr1_4:28777716-28777735 None:intergenic 45.0%
ACTCATACTAGTTGCAAGCC+AGG - chr1_4:28777720-28777739 Msa0158890:CDS 45.0%
TAACTGGTTGAGCTTTCACC+TGG + chr1_4:28777741-28777760 None:intergenic 45.0%
TCTCCAAATGCACCACAAAG+TGG + chr1_4:28777937-28777956 None:intergenic 45.0%
TGTGGTGCATTTGGAGAATC+TGG - chr1_4:28777940-28777959 Msa0158890:intron 45.0%
GTGGTGCATTTGGAGAATCT+GGG - chr1_4:28777941-28777960 Msa0158890:intron 45.0%
TTAAGCCACCTTGACATTGC+CGG + chr1_4:28778122-28778141 None:intergenic 45.0%
ATGTCAAGGTGGCTTAAGAG+AGG - chr1_4:28778125-28778144 Msa0158890:intron 45.0%
! TCGTCTGTGGATTGATATGC+TGG - chr1_4:28778176-28778195 Msa0158890:intron 45.0%
GAAACACATCATGCTGCACA+TGG - chr1_4:28778207-28778226 Msa0158890:intron 45.0%
TCGGAAACAATATGCTGGGA+CGG + chr1_4:28778325-28778344 None:intergenic 45.0%
!! TATATATATATATATGAATA+AGG + chr1_4:28774700-28774719 None:intergenic 5.0%
CGTGAGGATGAGTAAATGGG+CGG + chr1_4:28767570-28767589 None:intergenic 50.0%
GTGGCGTGAGGATGAGTAAA+TGG + chr1_4:28767574-28767593 None:intergenic 50.0%
ATGAGGATGAATGTGGCGTG+AGG + chr1_4:28767586-28767605 None:intergenic 50.0%
GAAGGGGAAAATAGAGGGGT+TGG + chr1_4:28767617-28767636 None:intergenic 50.0%
CGGGAAGAAGGGGAAAATAG+AGG + chr1_4:28767623-28767642 None:intergenic 50.0%
! AGGGATTTAATGGCGGAGTG+AGG + chr1_4:28767656-28767675 None:intergenic 50.0%
GGATTGAGCACATGGTCTGA+AGG + chr1_4:28767705-28767724 None:intergenic 50.0%
!! CAGTTGGATGGTAGTGGTAG+TGG - chr1_4:28767728-28767747 Msa0158890:three_prime_UTR 50.0%
GCCCCTAGCAAAGCTCAAAA+TGG + chr1_4:28767789-28767808 None:intergenic 50.0%
AGGGGCAATGTCTTACCTCT+AGG - chr1_4:28767803-28767822 Msa0158890:three_prime_UTR 50.0%
!! ATAGAGAGAGAGGCACCTAG+AGG + chr1_4:28767821-28767840 None:intergenic 50.0%
CTGATTTCTGCGGTGACGTT+AGG - chr1_4:28768266-28768285 Msa0158890:intron 50.0%
TCAACAGCGCAACCAAGACT+AGG + chr1_4:28768302-28768321 None:intergenic 50.0%
TTGGTGCAGCTGTAGAAGCA+TGG - chr1_4:28768505-28768524 Msa0158890:intron 50.0%
CATGGCCTGTTGGACTCTTT+GGG - chr1_4:28768523-28768542 Msa0158890:intron 50.0%
ACAAGCCCAAAGAGTCCAAC+AGG + chr1_4:28768531-28768550 None:intergenic 50.0%
GTATTGGAGAGGTCCATGCT+TGG + chr1_4:28768741-28768760 None:intergenic 50.0%
! GCGGGCTATGCGAATTGTAT+TGG + chr1_4:28768757-28768776 None:intergenic 50.0%
! ATGTGTTAGGGTAGTGGCGA+AGG - chr1_4:28769348-28769367 Msa0158890:intron 50.0%
! TGTGTTAGGGTAGTGGCGAA+GGG - chr1_4:28769349-28769368 Msa0158890:intron 50.0%
GTCGCTCCTTTGCTTCATAC+AGG + chr1_4:28769402-28769421 None:intergenic 50.0%
GTGAGGTTCATGGATCATGC+GGG + chr1_4:28769933-28769952 None:intergenic 50.0%
!! AAGTGGTGTTGCACTTACCC+AGG - chr1_4:28770743-28770762 Msa0158890:intron 50.0%
!! GAGTGGCTTGCTTAGGATCT+TGG - chr1_4:28771154-28771173 Msa0158890:intron 50.0%
TGGACTTGAAACACGCCTCT+AGG - chr1_4:28771337-28771356 Msa0158890:intron 50.0%
AGCAGTAAGCTCATGGAAGG+AGG + chr1_4:28772575-28772594 None:intergenic 50.0%
CCTAGCAGTAAGCTCATGGA+AGG + chr1_4:28772578-28772597 None:intergenic 50.0%
CCTTCCATGAGCTTACTGCT+AGG - chr1_4:28772575-28772594 Msa0158890:intron 50.0%
CACACTTAGAAGAATGGGCC+TGG - chr1_4:28772852-28772871 Msa0158890:intron 50.0%
CACTTAGAAGAATGGGCCTG+GGG - chr1_4:28772854-28772873 Msa0158890:intron 50.0%
GTCAATCACGCCTCTATAGC+AGG - chr1_4:28774024-28774043 Msa0158890:intron 50.0%
TCTGCCATAGCCTGCTATAG+AGG + chr1_4:28774037-28774056 None:intergenic 50.0%
TATAGCAGGCTATGGCAGAG+CGG - chr1_4:28774038-28774057 Msa0158890:intron 50.0%
AATAGGTGTGGCTGTCACAG+CGG - chr1_4:28774104-28774123 Msa0158890:intron 50.0%
CCGATGACACCAAAAGCCAA+TGG - chr1_4:28774486-28774505 Msa0158890:intron 50.0%
CAAGTCTATGCAGTGGGAGA+AGG - chr1_4:28775636-28775655 Msa0158890:intron 50.0%
!! CAGTGGGAGAAGGTTTTGGT+GGG - chr1_4:28775646-28775665 Msa0158890:intron 50.0%
! CTTGTATCCAAGGTACCTGC+AGG + chr1_4:28775752-28775771 None:intergenic 50.0%
AACTAACACAACTGCCACGC+GGG + chr1_4:28776993-28777012 None:intergenic 50.0%
! GCGGTTATAGAGCCACTTTG+TGG - chr1_4:28777922-28777941 Msa0158890:intron 50.0%
! GAGCCACTTTGTGGTGCATT+TGG - chr1_4:28777931-28777950 Msa0158890:intron 50.0%
!! AAGGTGTTCGGGTTAGCATG+AGG + chr1_4:28778046-28778065 None:intergenic 50.0%
ATGCGTCGCAAAGACAATCC+CGG - chr1_4:28778100-28778119 Msa0158890:intron 50.0%
AGACAATCCCGGCAATGTCA+AGG - chr1_4:28778111-28778130 Msa0158890:intron 50.0%
TAAGCCACCTTGACATTGCC+GGG + chr1_4:28778121-28778140 None:intergenic 50.0%
GAGGATGAGTAAATGGGCGG+TGG + chr1_4:28767567-28767586 None:intergenic 55.0%
AGGGGTTGGACGAGAGAATG+AGG + chr1_4:28767603-28767622 None:intergenic 55.0%
CACATGGTCTGAAGGGAGTG+GGG + chr1_4:28767697-28767716 None:intergenic 55.0%
GCACATGGTCTGAAGGGAGT+GGG + chr1_4:28767698-28767717 None:intergenic 55.0%
AGCACATGGTCTGAAGGGAG+TGG + chr1_4:28767699-28767718 None:intergenic 55.0%
! GCTGTAGAAGCATGGCCTGT+TGG - chr1_4:28768513-28768532 Msa0158890:intron 55.0%
GCATGGCCTGTTGGACTCTT+TGG - chr1_4:28768522-28768541 Msa0158890:intron 55.0%
ATGATAGCACGGCGGTAGCA+GGG + chr1_4:28770490-28770509 None:intergenic 55.0%
TATGATAGCACGGCGGTAGC+AGG + chr1_4:28770491-28770510 None:intergenic 55.0%
TGCTGGAGCGAATACTGCAC+TGG - chr1_4:28770910-28770929 Msa0158890:intron 55.0%
CACGCCTCTATAGCAGGCTA+TGG - chr1_4:28774030-28774049 Msa0158890:intron 55.0%
!! ACTGGTGGAAGGTGTTGCAC+AGG + chr1_4:28774073-28774092 None:intergenic 55.0%
TATTGAGCGTGGCTCACTGG+TGG + chr1_4:28774088-28774107 None:intergenic 55.0%
ACCAGTGAGCCACGCTCAAT+AGG - chr1_4:28774087-28774106 Msa0158890:intron 55.0%
ACCTATTGAGCGTGGCTCAC+TGG + chr1_4:28774091-28774110 None:intergenic 55.0%
TGAGCCACGCTCAATAGGTG+TGG - chr1_4:28774092-28774111 Msa0158890:intron 55.0%
ACAGCCACACCTATTGAGCG+TGG + chr1_4:28774099-28774118 None:intergenic 55.0%
! GGGGTTCACTTAGGTGCCAT+TGG - chr1_4:28774348-28774367 Msa0158890:intron 55.0%
GGAGTCATCACGCTGACACT+AGG + chr1_4:28774824-28774843 None:intergenic 55.0%
!! GCAGTGGGAGAAGGTTTTGG+TGG - chr1_4:28775645-28775664 Msa0158890:intron 55.0%
TGTGCGATTGTCTGTGTGCC+TGG - chr1_4:28776580-28776599 Msa0158890:intron 55.0%
TCGGTTAATAGTAGCCCGCG+TGG - chr1_4:28776976-28776995 Msa0158890:intron 55.0%
CAATCCCGGCAATGTCAAGG+TGG - chr1_4:28778114-28778133 Msa0158890:intron 55.0%
TCGAGTGCGGTGGCTGAACT+AGG + chr1_4:28767526-28767545 None:intergenic 60.0%
AGTTCAGCCACCGCACTCGA+CGG - chr1_4:28767526-28767545 Msa0158890:three_prime_UTR 60.0%
ATGGTCTGAAGGGAGTGGGG+CGG + chr1_4:28767694-28767713 None:intergenic 60.0%
GTTTGCTCCTTGTGGACCCC+AGG + chr1_4:28772873-28772892 None:intergenic 60.0%
ATGACCTCCGTCGAGTGCGG+TGG + chr1_4:28767536-28767555 None:intergenic 65.0%
ACCGCACTCGACGGAGGTCA+TGG - chr1_4:28767535-28767554 Msa0158890:three_prime_UTR 65.0%
GCCATGACCTCCGTCGAGTG+CGG + chr1_4:28767539-28767558 None:intergenic 65.0%
GCACTCGACGGAGGTCATGG+CGG - chr1_4:28767538-28767557 Msa0158890:three_prime_UTR 65.0%
CACTCGACGGAGGTCATGGC+GGG - chr1_4:28767539-28767558 Msa0158890:three_prime_UTR 65.0%
ATGGCGAGGGCGGGAAGAAG+GGG + chr1_4:28767633-28767652 None:intergenic 65.0%
GATGGCGAGGGCGGGAAGAA+GGG + chr1_4:28767634-28767653 None:intergenic 65.0%
TGGCGGAGTGAGGATGGCGA+GGG + chr1_4:28767646-28767665 None:intergenic 65.0%
! ATGGCGGAGTGAGGATGGCG+AGG + chr1_4:28767647-28767666 None:intergenic 65.0%
! GCGGTGGTGGCGTAGAGTGA+GGG + chr1_4:28767675-28767694 None:intergenic 65.0%
GAATGGGCCTGGGGTCCACA+AGG - chr1_4:28772863-28772882 Msa0158890:intron 65.0%
AGCAGGCTATGGCAGAGCGG+TGG - chr1_4:28774041-28774060 Msa0158890:intron 65.0%
GAGCGTGGCTCACTGGTGGA+AGG + chr1_4:28774084-28774103 None:intergenic 65.0%
TCAGCCACCGCACTCGACGG+AGG - chr1_4:28767529-28767548 Msa0158890:three_prime_UTR 70.0%
GGATGGCGAGGGCGGGAAGA+AGG + chr1_4:28767635-28767654 None:intergenic 70.0%
GGAGTGAGGATGGCGAGGGC+GGG + chr1_4:28767642-28767661 None:intergenic 70.0%
CGGAGTGAGGATGGCGAGGG+CGG + chr1_4:28767643-28767662 None:intergenic 70.0%
! GGCGGTGGTGGCGTAGAGTG+AGG + chr1_4:28767676-28767695 None:intergenic 70.0%
TGAAGGGAGTGGGGCGGTGG+TGG + chr1_4:28767688-28767707 None:intergenic 70.0%
GTCTGAAGGGAGTGGGGCGG+TGG + chr1_4:28767691-28767710 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 28767408 28778627 28767408 ID=Msa0158890;Name=Msa0158890
chr1_4 mRNA 28767408 28778627 28767408 ID=Msa0158890-mRNA-1;Parent=Msa0158890;Name=Msa0158890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=146|1|1|1|0.83|0.92|13|486|415
chr1_4 exon 28767408 28767965 28767408 ID=Msa0158890-mRNA-1:exon:9264;Parent=Msa0158890-mRNA-1
chr1_4 exon 28768033 28768134 28768033 ID=Msa0158890-mRNA-1:exon:9263;Parent=Msa0158890-mRNA-1
chr1_4 exon 28768294 28768423 28768294 ID=Msa0158890-mRNA-1:exon:9262;Parent=Msa0158890-mRNA-1
chr1_4 exon 28770194 28770279 28770194 ID=Msa0158890-mRNA-1:exon:9261;Parent=Msa0158890-mRNA-1
chr1_4 exon 28770530 28770597 28770530 ID=Msa0158890-mRNA-1:exon:9260;Parent=Msa0158890-mRNA-1
chr1_4 exon 28772538 28772559 28772538 ID=Msa0158890-mRNA-1:exon:9259;Parent=Msa0158890-mRNA-1
chr1_4 exon 28773534 28773647 28773534 ID=Msa0158890-mRNA-1:exon:9258;Parent=Msa0158890-mRNA-1
chr1_4 exon 28775059 28775127 28775059 ID=Msa0158890-mRNA-1:exon:9257;Parent=Msa0158890-mRNA-1
chr1_4 exon 28775271 28775329 28775271 ID=Msa0158890-mRNA-1:exon:9256;Parent=Msa0158890-mRNA-1
chr1_4 exon 28775727 28775805 28775727 ID=Msa0158890-mRNA-1:exon:9255;Parent=Msa0158890-mRNA-1
chr1_4 exon 28777487 28777554 28777487 ID=Msa0158890-mRNA-1:exon:9254;Parent=Msa0158890-mRNA-1
chr1_4 exon 28777664 28777771 28777664 ID=Msa0158890-mRNA-1:exon:9253;Parent=Msa0158890-mRNA-1
chr1_4 exon 28778211 28778627 28778211 ID=Msa0158890-mRNA-1:exon:9252;Parent=Msa0158890-mRNA-1
chr1_4 five_prime_UTR 28778482 28778627 28778482 ID=Msa0158890-mRNA-1:five_prime_utr;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28778211 28778481 28778211 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28777664 28777771 28777664 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28777487 28777554 28777487 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28775727 28775805 28775727 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28775271 28775329 28775271 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28775059 28775127 28775059 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28773534 28773647 28773534 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28772538 28772559 28772538 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28770530 28770597 28770530 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28770194 28770279 28770194 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28768294 28768423 28768294 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28768033 28768134 28768033 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 CDS 28767894 28767965 28767894 ID=Msa0158890-mRNA-1:cds;Parent=Msa0158890-mRNA-1
chr1_4 three_prime_UTR 28767408 28767893 28767408 ID=Msa0158890-mRNA-1:three_prime_utr;Parent=Msa0158890-mRNA-1
Gene Sequence

>Msa0158890

ATGGCGGGAACCACCGCCCATTTACTCATCCTCACGCCACATTCATCCTCATTCTCTCGTCCAACCCCTCTATTTTCCCCTTCTTCCCGCCCTCGCCATCCTCACTCCGCCATTAAATCCCTCACTCTACGCCACCACCGCCCCACTCCCTTCAGACCATGTGCTCAATCCAATCAGTTGGATGGTAGTGGTAGTGGAAGTAAAGAGTCAAAAGGATTGAGCTGGGTTGAACCCATTTTGAGCTTTGCTAGGGGCAATGTCTTACCTCTAGCTCTGATTTCTGCGGTGACGTTAGGATTAACATGTCCTAGTCTTGGTTGCGCTGTTGACAAATATCATGTATCCAAAATTGGGCCGTTTGGAATTTTTGTTATCTCAGGGTTGGTGTTGCGAAGCGAAGAAATTGGTGCAGCTGTAGAAGCATGGCCTGTTGGACTCTTTGGGCTTGTATCTATTTTATTTCTTACACCATACTTTTCCAGGGTAATATTACAAATTCAGCTCCAACCCCAAGAATTTATTACAGGGTTAGCCATATTTTGCTGTATGCCAACTACATTATCAAGTGGTGTTGCACTTACCCAGCTTGCTGGAGCGAATACTGCACTGGCTCTTGCAATGACAGTAATATCTAACTTGTTAGGAATATTAATCATTCCATTTTCCATCACAAAATTTGTAGCTAGTGGAGTTGGAGTGACTTTACCCACCAAGCAGTTATTTAAAAGTCTTGTTCTTACCATATTAATCCCCCTTATTTTGGGAAAGGTTCTACGTGAATCTTTTAAAGATGTTGCTGACTTTGTTGACAGAAACCGTAAGCTTTTCTCAGGGATCAGTGCATTTTTTCTTAGCCTGGTACCTTGGATACAAGTGAGCAAGTCAAGGTCACTTCTGTTAATAGTGAAGCCCAAAGTTTTTCTTGTAGCTATTGGACTGGGAGCACTTCTTCATCTGACCTTATTGGTATTCAATAGCATTGCTGTCCGGAGTCTTTCAATTATCTCTGGTGGTAGAAAATCAACTTTTTCCCGTGAAGAAAATGCCAACGCACTCATACTAGTTGCAAGCCAGAAAACATTACCAGTAATGGTAGCGGTTATAGAGCCACTTTGTGGTGCATTTGGAGAATCTGGGTTACTGGTTCTTCCTTGTATTGCAACACATCTAATCCAGATTATTGTGGACTCTTTTCTTGTCAACTTCATGCGTCGCAAAGACAATCCCGGCAATGTCAAGGTGGCTTAA

Protein sequence

>Msa0158890

MAGTTAHLLILTPHSSSFSRPTPLFSPSSRPRHPHSAIKSLTLRHHRPTPFRPCAQSNQLDGSGSGSKESKGLSWVEPILSFARGNVLPLALISAVTLGLTCPSLGCAVDKYHVSKIGPFGIFVISGLVLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRVILQIQLQPQEFITGLAIFCCMPTTLSSGVALTQLAGANTALALAMTVISNLLGILIIPFSITKFVASGVGVTLPTKQLFKSLVLTILIPLILGKVLRESFKDVADFVDRNRKLFSGISAFFLSLVPWIQVSKSRSLLLIVKPKVFLVAIGLGALLHLTLLVFNSIAVRSLSIISGGRKSTFSREENANALILVASQKTLPVMVAVIEPLCGAFGESGLLVLPCIATHLIQIIVDSFLVNFMRRKDNPGNVKVA*