AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074690 MtrunA17_Chr1g0182381 96.109 257 10 0 1 257 1 257 0.0 505
Msa0074690 MtrunA17_Chr7g0263011 44.314 255 125 5 1 243 1 250 2.12e-36 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074690 AT3G53670.1 40.288 139 77 4 78 215 66 199 2.13e-14 70.5
Msa0074690 AT3G53670.2 40.288 139 77 4 78 215 66 199 2.13e-14 70.5
Msa0074690 AT2G37480.1 41.732 127 55 4 73 193 58 171 2.35e-13 67.4
Msa0074690 AT2G37480.2 40.945 127 55 4 73 193 58 170 1.80e-12 64.7

Find 101 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTACAAACGTGTCGTTTA+AGG 0.134390 1_2:+49570796 Msa0074690:five_prime_UTR
AAGCGATTTCAGATCGAAAT+TGG 0.164469 1_2:-49570448 None:intergenic
AAATGAAATTGTCTGTTAAA+TGG 0.168633 1_2:+49572659 Msa0074690:CDS
TTATTTATGCAGTCTTGATA+TGG 0.236888 1_2:-49573099 None:intergenic
TGATGATAAGAAAGCGAAAT+TGG 0.267644 1_2:-49570244 None:intergenic
AATCCTTTGCCACAAGATTC+TGG 0.274308 1_2:-49572856 None:intergenic
GGTAGTAGTAACTGTAATAT+TGG 0.282358 1_2:+49571685 Msa0074690:CDS
AGTAAACTTGAAATTACTTT+TGG 0.301816 1_2:+49571601 Msa0074690:CDS
CTTGAAGGCAACACCGTATC+AGG 0.316264 1_2:-49571793 None:intergenic
GTAGTAGTAACTGTAATATT+GGG 0.335267 1_2:+49571686 Msa0074690:CDS
TTTCTCGCGGCTACCCTTCA+TGG 0.337552 1_2:-49572623 None:intergenic
CACTCTCCTGCGAATGTTGT+GGG 0.342078 1_2:+49571565 Msa0074690:CDS
TCCGACATGGCAAGGACTTT+CGG 0.354930 1_2:-49572962 None:intergenic
TTAAATAATCTCGACGTTGC+TGG 0.364240 1_2:+49572895 Msa0074690:CDS
TGCAATTTGATTCCGTTTCA+CGG 0.366326 1_2:+49570526 Msa0074690:five_prime_UTR
TAAATAATTAGTTTCCTGTT+TGG 0.384045 1_2:+49573115 Msa0074690:three_prime_UTR
TATTTATGCAGTCTTGATAT+GGG 0.394789 1_2:-49573098 None:intergenic
GAAACGTGTACGTTCCGAAT+TGG 0.403238 1_2:+49570119 None:intergenic
AGATCGAAGAACATGCGAAA+TGG 0.409219 1_2:-49570395 None:intergenic
AATGAAATTGTCTGTTAAAT+GGG 0.413068 1_2:+49572660 Msa0074690:CDS
ATTTGTTTATATAGCGAGAA+TGG 0.414711 1_2:-49570174 None:intergenic
CAAAGGATTTGATGCTTCAA+TGG 0.415687 1_2:+49572870 Msa0074690:CDS
CGAAATGGATCTGAGAGTTA+TGG 0.419952 1_2:-49570380 None:intergenic
TTGATTCACGGTTGAATTTG+AGG 0.426338 1_2:+49570694 Msa0074690:five_prime_UTR
ATTCCAAGAGATACATTGAT+TGG 0.426598 1_2:-49573188 None:intergenic
AACAAAACAAAACTCTCATA+TGG 0.430420 1_2:+49570289 Msa0074690:five_prime_UTR
AACCTTTCCTTATCCTGATA+CGG 0.431985 1_2:+49571780 Msa0074690:CDS
AATTGCGAAAATCTCAAAAC+AGG 0.441311 1_2:-49570770 None:intergenic
TCTTCTTCACACAACCAAAC+AGG 0.451465 1_2:-49573129 None:intergenic
TCGCCATCAGAAGAGCTTGA+AGG 0.452508 1_2:-49571808 None:intergenic
CCACTCTCCTGCGAATGTTG+TGG 0.452810 1_2:+49571564 Msa0074690:CDS
TGGGAAATCCTTTGTTCGAT+CGG 0.453138 1_2:-49570428 None:intergenic
GACTTATGCAGTCTTGATAT+AGG 0.453851 1_2:-49573057 None:intergenic
AGCGATTTCAGATCGAAATT+GGG 0.457477 1_2:-49570447 None:intergenic
CATATGTGGTGGGTTTGAAC+AGG 0.469286 1_2:+49571717 Msa0074690:CDS
TCCAGACTCGGTTTCTCAGC+CGG 0.470198 1_2:+49571873 Msa0074690:CDS
ACCGGCTGAGAAACCGAGTC+TGG 0.472530 1_2:-49571874 None:intergenic
GACTTATGCAGTCTTGATAT+AGG 0.475805 1_2:-49573016 None:intergenic
TGGCAAGGACTTTCGGTAGC+TGG 0.476961 1_2:-49572955 None:intergenic
AAAAGCGATTTGGTTGGAAT+GGG 0.477444 1_2:-49570200 None:intergenic
AGAAGCAGTATCGCTATAGA+TGG 0.477970 1_2:+49572833 Msa0074690:CDS
GTGTGATCTTATACGATTGA+TGG 0.483125 1_2:+49571537 Msa0074690:intron
CTGTGGGGTAAGAACCAATT+CGG 0.488021 1_2:-49570133 None:intergenic
CTCTACACAACTTCCAGACT+CGG 0.490684 1_2:+49571861 Msa0074690:CDS
GGCAACACCGTATCAGGATA+AGG 0.496540 1_2:-49571787 None:intergenic
CATGTTCTTCGATCTTCGAT+CGG 0.503699 1_2:+49570403 Msa0074690:five_prime_UTR
GGCACCGGATCATACACATC+AGG 0.503927 1_2:-49572685 None:intergenic
CAGAAGGGCAGCTATTCTAA+AGG 0.505063 1_2:+49572793 Msa0074690:CDS
TGGCCAATCAATGTATCTCT+TGG 0.506192 1_2:+49573185 Msa0074690:three_prime_UTR
TCTGATGGCGAGGAGGCTGA+TGG 0.508008 1_2:+49571820 Msa0074690:CDS
ATAGCGAGAATGGAGGGAAT+CGG 0.517157 1_2:-49570164 None:intergenic
ATGTTGTTTCTTAGTTCTCA+CGG 0.517557 1_2:-49572725 None:intergenic
AAAGAAGATCCACCGTGAAA+CGG 0.518001 1_2:-49570538 None:intergenic
TTGACTTCAAAGATTGTGAA+AGG 0.525582 1_2:+49570731 Msa0074690:five_prime_UTR
ACTAAAAGTGAGGAGCTTGA+AGG 0.525677 1_2:+49571750 Msa0074690:CDS
AGAAGGGCAGCTATTCTAAA+GGG 0.525902 1_2:+49572794 Msa0074690:CDS
AAAACTTGTATCTGCCATGA+AGG 0.537609 1_2:+49572609 Msa0074690:CDS
TTGCCTTCAAGCTCTTCTGA+TGG 0.541380 1_2:+49571805 Msa0074690:CDS
GGAATCGGAAACTTCGCTGT+GGG 0.544040 1_2:-49570149 None:intergenic
GATCGGTTCCGATCGAACAA+AGG 0.548374 1_2:+49570420 Msa0074690:five_prime_UTR
GGAAAGTGAAGAATTCGAAT+CGG 0.548593 1_2:-49570359 None:intergenic
GGGTAGCCGCGAGAAACACT+TGG 0.556191 1_2:+49572630 Msa0074690:CDS
TGGCCAGAATCTTGTGGCAA+AGG 0.557338 1_2:+49572853 Msa0074690:CDS
TGCTCATAGCTTCTCCGACA+TGG 0.557738 1_2:-49572975 None:intergenic
TTCAAGCTCTTCTGATGGCG+AGG 0.562911 1_2:+49571810 Msa0074690:CDS
AGGTGTAAAGAAAAGTCAGA+AGG 0.565051 1_2:+49572777 Msa0074690:CDS
TCGCACCCCACAACATTCGC+AGG 0.577188 1_2:-49571571 None:intergenic
CTAAGAAACAACATAAATCC+CGG 0.580812 1_2:+49572734 Msa0074690:CDS
TGTTTATATAGCGAGAATGG+AGG 0.581054 1_2:-49570171 None:intergenic
GTTTATATAGCGAGAATGGA+GGG 0.584864 1_2:-49570170 None:intergenic
CCACAACATTCGCAGGAGAG+TGG 0.589259 1_2:-49571564 None:intergenic
ATTGGGGAGGGACACATATG+TGG 0.592835 1_2:+49571703 Msa0074690:CDS
ATAGCTTCTCCGACATGGCA+AGG 0.593291 1_2:-49572970 None:intergenic
AGTAACTGTAATATTGGGGA+GGG 0.594128 1_2:+49571691 Msa0074690:CDS
GGCCCCTGATGTGTATGATC+CGG 0.600130 1_2:+49572681 Msa0074690:CDS
ATCAAGAAGAGTGAAAAGAA+AGG 0.600790 1_2:+49572757 Msa0074690:CDS
TGTGACGACAATGTTGGCAC+CGG 0.602355 1_2:-49572700 None:intergenic
TAGTAGTAACTGTAATATTG+GGG 0.605374 1_2:+49571687 Msa0074690:CDS
TGATATAGGAGACAAAATCA+AGG 0.608502 1_2:-49573002 None:intergenic
GGTGTAAAGAAAAGTCAGAA+GGG 0.615586 1_2:+49572778 Msa0074690:CDS
GGGGAGGGACACATATGTGG+TGG 0.617375 1_2:+49571706 Msa0074690:CDS
ACGGTATGTGACGACAATGT+TGG 0.618744 1_2:-49572706 None:intergenic
GGGAGGGACACATATGTGGT+GGG 0.620596 1_2:+49571707 Msa0074690:CDS
AAACTTGTATCTGCCATGAA+GGG 0.622758 1_2:+49572610 Msa0074690:CDS
GCACCGGATCATACACATCA+GGG 0.623292 1_2:-49572684 None:intergenic
ACCGAAAGTCCTTGCCATGT+CGG 0.626598 1_2:+49572961 Msa0074690:CDS
CACCGTATCAGGATAAGGAA+AGG 0.628831 1_2:-49571782 None:intergenic
TATAGATGGCCAGAATCTTG+TGG 0.629442 1_2:+49572847 Msa0074690:CDS
GGTAGCCGCGAGAAACACTT+GGG 0.637014 1_2:+49572631 Msa0074690:CDS
AAGCTCTTCTGATGGCGAGG+AGG 0.637217 1_2:+49571813 Msa0074690:CDS
TAGTAACTGTAATATTGGGG+AGG 0.638150 1_2:+49571690 Msa0074690:CDS
ACTCTCCTGCGAATGTTGTG+GGG 0.649280 1_2:+49571566 Msa0074690:CDS
ACATGTATCTGATGATGATG+AGG 0.654147 1_2:+49571660 Msa0074690:CDS
AAGAAACCACACTAAAAGTG+AGG 0.668513 1_2:+49571740 Msa0074690:CDS
GCGATCCCAAGTGTTTCTCG+CGG 0.669443 1_2:-49572636 None:intergenic
GGGAATCGGAAACTTCGCTG+TGG 0.683974 1_2:-49570150 None:intergenic
GAATCGGAAACTTCGCTGTG+GGG 0.684027 1_2:-49570148 None:intergenic
CACCGGATCATACACATCAG+GGG 0.699399 1_2:-49572683 None:intergenic
GTATCTGATGATGATGAGGA+TGG 0.713196 1_2:+49571664 Msa0074690:CDS
TTTCTGTGTTAAATAATGTG+TGG 0.717143 1_2:+49573247 Msa0074690:three_prime_UTR
AATTTGATTCCGTTTCACGG+TGG 0.736766 1_2:+49570529 Msa0074690:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAGATGAAAAAACTT+TGG - chr1_2:49570646-49570665 None:intergenic 15.0%
!!! AAGTTTTTTCATCTATTTTT+TGG + chr1_2:49570646-49570665 Msa0074690:five_prime_UTR 15.0%
!! AATACAAAATTGAAAATTCA+TGG - chr1_2:49570903-49570922 None:intergenic 15.0%
!!! AACATACACTTTATTTTAAA+TGG + chr1_2:49572380-49572399 Msa0074690:intron 15.0%
!!! ACATACACTTTATTTTAAAT+GGG + chr1_2:49572381-49572400 Msa0074690:intron 15.0%
!!! ATATTTGCTGACAATTTATA+TGG + chr1_2:49571057-49571076 Msa0074690:intron 20.0%
!! GCTAATTAATGAATATAACA+AGG + chr1_2:49571079-49571098 Msa0074690:intron 20.0%
!! TCAACAAATTAGATAGTTAA+CGG - chr1_2:49571240-49571259 None:intergenic 20.0%
!! TTTACAATATTAGTGTATAG+TGG + chr1_2:49571318-49571337 Msa0074690:intron 20.0%
!!! AGTAAACTTGAAATTACTTT+TGG + chr1_2:49571601-49571620 Msa0074690:CDS 20.0%
!! TAAGAAATGTAGTTTATGTT+TGG + chr1_2:49571948-49571967 Msa0074690:intron 20.0%
!!! ACTTTATTTTAAATGGGAAA+GGG + chr1_2:49572387-49572406 Msa0074690:intron 20.0%
!! AAATGAAATTGTCTGTTAAA+TGG + chr1_2:49572659-49572678 Msa0074690:CDS 20.0%
!! AATGAAATTGTCTGTTAAAT+GGG + chr1_2:49572660-49572679 Msa0074690:CDS 20.0%
!!! TAAATAATTAGTTTCCTGTT+TGG + chr1_2:49573115-49573134 Msa0074690:three_prime_UTR 20.0%
! ATTTGTTTATATAGCGAGAA+TGG - chr1_2:49570177-49570196 None:intergenic 25.0%
! AACAAAACAAAACTCTCATA+TGG + chr1_2:49570289-49570308 Msa0074690:five_prime_UTR 25.0%
!!! TGTGTTTTTTCTGTTAATTG+AGG - chr1_2:49570325-49570344 None:intergenic 25.0%
!!! AAATCGCTTTTGTAACAATT+AGG + chr1_2:49570462-49570481 Msa0074690:five_prime_UTR 25.0%
!!! AATCGCTTTTGTAACAATTA+GGG + chr1_2:49570463-49570482 Msa0074690:five_prime_UTR 25.0%
! AACATCTTGAAAAAAGTGAT+AGG + chr1_2:49570572-49570591 Msa0074690:five_prime_UTR 25.0%
!!! ATTTTTTGGAGTATTTCTTC+TGG + chr1_2:49570660-49570679 Msa0074690:five_prime_UTR 25.0%
!!! GTTTTGTGAATTTTGATTCA+CGG + chr1_2:49570682-49570701 Msa0074690:five_prime_UTR 25.0%
! TATGATTCAACCTAATTTCT+AGG + chr1_2:49570866-49570885 Msa0074690:intron 25.0%
! CTATATTCAACCTAGAAATT+AGG - chr1_2:49570879-49570898 None:intergenic 25.0%
!! CTAATTTCTAGGTTGAATAT+AGG + chr1_2:49570877-49570896 Msa0074690:intron 25.0%
! ATATTAGTGTATAGTGGTAT+TGG + chr1_2:49571324-49571343 Msa0074690:intron 25.0%
!!! AAACTTGAAATTACTTTTGG+TGG + chr1_2:49571604-49571623 Msa0074690:CDS 25.0%
!!! AACTTGAAATTACTTTTGGT+GGG + chr1_2:49571605-49571624 Msa0074690:CDS 25.0%
! GTAGTAGTAACTGTAATATT+GGG + chr1_2:49571686-49571705 Msa0074690:CDS 25.0%
! TAGTAGTAACTGTAATATTG+GGG + chr1_2:49571687-49571706 Msa0074690:CDS 25.0%
! AAATGTAGTTTATGTTTGGA+CGG + chr1_2:49571952-49571971 Msa0074690:intron 25.0%
! AAGTGTATGTTTGTATCATA+TGG - chr1_2:49572132-49572151 None:intergenic 25.0%
!!! ACATACACTTTATTTTGAAG+TGG + chr1_2:49572142-49572161 Msa0074690:intron 25.0%
!! TATGTTTTGTATCATATGGA+GGG - chr1_2:49572366-49572385 None:intergenic 25.0%
!! AGTGTATGTTTTGTATCATA+TGG - chr1_2:49572370-49572389 None:intergenic 25.0%
!!! CACTTTATTTTAAATGGGAA+AGG + chr1_2:49572386-49572405 Msa0074690:intron 25.0%
! TATTTATGCAGTCTTGATAT+GGG - chr1_2:49573101-49573120 None:intergenic 25.0%
! TTATTTATGCAGTCTTGATA+TGG - chr1_2:49573102-49573121 None:intergenic 25.0%
!!! GAAGAAGAGTTTTTTGTTTA+CGG + chr1_2:49573144-49573163 Msa0074690:three_prime_UTR 25.0%
! TTTCTGTGTTAAATAATGTG+TGG + chr1_2:49573247-49573266 Msa0074690:three_prime_UTR 25.0%
TGATGATAAGAAAGCGAAAT+TGG - chr1_2:49570247-49570266 None:intergenic 30.0%
! AACGAAACTAAAAAAGCGTA+AGG - chr1_2:49570616-49570635 None:intergenic 30.0%
TTGACTTCAAAGATTGTGAA+AGG + chr1_2:49570731-49570750 Msa0074690:five_prime_UTR 30.0%
AATTGCGAAAATCTCAAAAC+AGG - chr1_2:49570773-49570792 None:intergenic 30.0%
CATGATTTATCAGCTATGAA+TGG + chr1_2:49571005-49571024 Msa0074690:intron 30.0%
GGTTAATTGTGTTCAATTGT+TGG - chr1_2:49571121-49571140 None:intergenic 30.0%
!!! TGTTTTGTCGATTTGTTCTT+TGG + chr1_2:49571508-49571527 Msa0074690:intron 30.0%
!!! GTTTTGTCGATTTGTTCTTT+GGG + chr1_2:49571509-49571528 Msa0074690:intron 30.0%
GGTAGTAGTAACTGTAATAT+TGG + chr1_2:49571685-49571704 Msa0074690:CDS 30.0%
TGAACACAATTAGAACTTAC+CGG - chr1_2:49571895-49571914 None:intergenic 30.0%
GTATGTTTGTATCATATGGT+GGG - chr1_2:49572128-49572147 None:intergenic 30.0%
TGTATGTTTGTATCATATGG+TGG - chr1_2:49572129-49572148 None:intergenic 30.0%
!! GAAAGAACTTTTGACTCATT+CGG + chr1_2:49572164-49572183 Msa0074690:intron 30.0%
! TTATGCTAGATGCATTGTTT+TGG + chr1_2:49572270-49572289 Msa0074690:intron 30.0%
! GTATGTTTTGTATCATATGG+AGG - chr1_2:49572367-49572386 None:intergenic 30.0%
!!! ATAGTTTTGTCGAGCATAAT+TGG + chr1_2:49572520-49572539 Msa0074690:intron 30.0%
! TTTTCTCTGTATTATACCAC+AGG + chr1_2:49572579-49572598 Msa0074690:intron 30.0%
!! ATGTTGTTTCTTAGTTCTCA+CGG - chr1_2:49572728-49572747 None:intergenic 30.0%
CTAAGAAACAACATAAATCC+CGG + chr1_2:49572734-49572753 Msa0074690:CDS 30.0%
ATCAAGAAGAGTGAAAAGAA+AGG + chr1_2:49572757-49572776 Msa0074690:CDS 30.0%
TGATATAGGAGACAAAATCA+AGG - chr1_2:49573005-49573024 None:intergenic 30.0%
ATTCCAAGAGATACATTGAT+TGG - chr1_2:49573191-49573210 None:intergenic 30.0%
! TGTGTGGTAGCTTTTATATT+TGG + chr1_2:49573263-49573282 Msa0074690:three_prime_UTR 30.0%
GTTTATATAGCGAGAATGGA+GGG - chr1_2:49570173-49570192 None:intergenic 35.0%
TGTTTATATAGCGAGAATGG+AGG - chr1_2:49570174-49570193 None:intergenic 35.0%
!! AAAAGCGATTTGGTTGGAAT+GGG - chr1_2:49570203-49570222 None:intergenic 35.0%
!! AAAAAGCGATTTGGTTGGAA+TGG - chr1_2:49570204-49570223 None:intergenic 35.0%
!! AGTTGAAAAAGCGATTTGGT+TGG - chr1_2:49570209-49570228 None:intergenic 35.0%
GGAAAGTGAAGAATTCGAAT+CGG - chr1_2:49570362-49570381 None:intergenic 35.0%
AGCGATTTCAGATCGAAATT+GGG - chr1_2:49570450-49570469 None:intergenic 35.0%
AAGCGATTTCAGATCGAAAT+TGG - chr1_2:49570451-49570470 None:intergenic 35.0%
TGCAATTTGATTCCGTTTCA+CGG + chr1_2:49570526-49570545 Msa0074690:five_prime_UTR 35.0%
TTGATTCACGGTTGAATTTG+AGG + chr1_2:49570694-49570713 Msa0074690:five_prime_UTR 35.0%
!! ATCTACAAACGTGTCGTTTA+AGG + chr1_2:49570796-49570815 Msa0074690:five_prime_UTR 35.0%
! GTTCTGAACAATAAGACACT+AGG - chr1_2:49570936-49570955 None:intergenic 35.0%
ATGGTAAGTGATGTTCCAAA+GGG - chr1_2:49571145-49571164 None:intergenic 35.0%
TTGTGAACACTTGCAAATCA+TGG - chr1_2:49571164-49571183 None:intergenic 35.0%
ACGGTTTGACACATTTAAGT+TGG - chr1_2:49571221-49571240 None:intergenic 35.0%
GAATAGTAGACAATGTTGTC+TGG + chr1_2:49571290-49571309 Msa0074690:intron 35.0%
GGAAGTAATCAACAAGAAGA+AGG - chr1_2:49571392-49571411 None:intergenic 35.0%
AAGTAAAACAGTCGACACAT+AGG - chr1_2:49571434-49571453 None:intergenic 35.0%
GTGTGATCTTATACGATTGA+TGG + chr1_2:49571537-49571556 Msa0074690:intron 35.0%
! ACATGTATCTGATGATGATG+AGG + chr1_2:49571660-49571679 Msa0074690:CDS 35.0%
TAGTAACTGTAATATTGGGG+AGG + chr1_2:49571690-49571709 Msa0074690:CDS 35.0%
AGTAACTGTAATATTGGGGA+GGG + chr1_2:49571691-49571710 Msa0074690:CDS 35.0%
AAGAAACCACACTAAAAGTG+AGG + chr1_2:49571740-49571759 Msa0074690:CDS 35.0%
AACCTTTCCTTATCCTGATA+CGG + chr1_2:49571780-49571799 Msa0074690:CDS 35.0%
! CTAAAGCTTTTGCAAAACCA+CGG - chr1_2:49572004-49572023 None:intergenic 35.0%
GAAATTACTGTGAACAACTG+TGG + chr1_2:49572031-49572050 Msa0074690:intron 35.0%
TTGTAGCTTTCACACAATCA+CGG + chr1_2:49572079-49572098 Msa0074690:intron 35.0%
!!! TTGTTTTGGTCGAGCATAAT+TGG + chr1_2:49572284-49572303 Msa0074690:intron 35.0%
ATGCAGCTTTCACATAATCA+CGG + chr1_2:49572317-49572336 Msa0074690:intron 35.0%
CTCATTCAACAAATAGAAGC+TGG + chr1_2:49572416-49572435 Msa0074690:intron 35.0%
AAAACTTGTATCTGCCATGA+AGG + chr1_2:49572609-49572628 Msa0074690:CDS 35.0%
AAACTTGTATCTGCCATGAA+GGG + chr1_2:49572610-49572629 Msa0074690:CDS 35.0%
! TCTTTTCACTCTTCTTGATC+CGG - chr1_2:49572756-49572775 None:intergenic 35.0%
AGGTGTAAAGAAAAGTCAGA+AGG + chr1_2:49572777-49572796 Msa0074690:CDS 35.0%
GGTGTAAAGAAAAGTCAGAA+GGG + chr1_2:49572778-49572797 Msa0074690:CDS 35.0%
CAAAGGATTTGATGCTTCAA+TGG + chr1_2:49572870-49572889 Msa0074690:CDS 35.0%
TTAAATAATCTCGACGTTGC+TGG + chr1_2:49572895-49572914 Msa0074690:CDS 35.0%
!!! TTTTTGAGATGCTAGTTGCA+TGG - chr1_2:49572933-49572952 None:intergenic 35.0%
GACTTATGCAGTCTTGATAT+AGG - chr1_2:49573019-49573038 None:intergenic 35.0%
GACTTATGCAGTCTTGATAT+AGG - chr1_2:49573019-49573038 None:intergenic 35.0%
GGTTAAAAACTATTCAGTGC+TGG + chr1_2:49573165-49573184 Msa0074690:three_prime_UTR 35.0%
! AGCGAGTTGAAAAAGCGATT+TGG - chr1_2:49570213-49570232 None:intergenic 40.0%
CGAAATGGATCTGAGAGTTA+TGG - chr1_2:49570383-49570402 None:intergenic 40.0%
AGATCGAAGAACATGCGAAA+TGG - chr1_2:49570398-49570417 None:intergenic 40.0%
CATGTTCTTCGATCTTCGAT+CGG + chr1_2:49570403-49570422 Msa0074690:five_prime_UTR 40.0%
TGGGAAATCCTTTGTTCGAT+CGG - chr1_2:49570431-49570450 None:intergenic 40.0%
AATTTGATTCCGTTTCACGG+TGG + chr1_2:49570529-49570548 Msa0074690:five_prime_UTR 40.0%
AAAGAAGATCCACCGTGAAA+CGG - chr1_2:49570541-49570560 None:intergenic 40.0%
CTTGAAAAAAGTGATAGGCG+TGG + chr1_2:49570577-49570596 Msa0074690:five_prime_UTR 40.0%
GAACACAATTAACCACCCTT+TGG + chr1_2:49571127-49571146 Msa0074690:intron 40.0%
CATGGTAAGTGATGTTCCAA+AGG - chr1_2:49571146-49571165 None:intergenic 40.0%
! GTATCTGATGATGATGAGGA+TGG + chr1_2:49571664-49571683 Msa0074690:CDS 40.0%
ACTAAAAGTGAGGAGCTTGA+AGG + chr1_2:49571750-49571769 Msa0074690:CDS 40.0%
TGTAGTTTATGTTTGGACGG+TGG + chr1_2:49571955-49571974 Msa0074690:intron 40.0%
GTAGTTTATGTTTGGACGGT+GGG + chr1_2:49571956-49571975 Msa0074690:intron 40.0%
TGGGTTGCCGAAATCATTAT+GGG + chr1_2:49571975-49571994 Msa0074690:intron 40.0%
ACGGTTGCCCATAATGATTT+CGG - chr1_2:49571985-49572004 None:intergenic 40.0%
! ATGGCAGATACAAGTTTTGC+AGG - chr1_2:49572607-49572626 None:intergenic 40.0%
! CTTTTCACTCTTCTTGATCC+GGG - chr1_2:49572755-49572774 None:intergenic 40.0%
AGAAGGGCAGCTATTCTAAA+GGG + chr1_2:49572794-49572813 Msa0074690:CDS 40.0%
AGAAGCAGTATCGCTATAGA+TGG + chr1_2:49572833-49572852 Msa0074690:CDS 40.0%
TATAGATGGCCAGAATCTTG+TGG + chr1_2:49572847-49572866 Msa0074690:CDS 40.0%
AATCCTTTGCCACAAGATTC+TGG - chr1_2:49572859-49572878 None:intergenic 40.0%
TCTTCTTCACACAACCAAAC+AGG - chr1_2:49573132-49573151 None:intergenic 40.0%
TGGCCAATCAATGTATCTCT+TGG + chr1_2:49573185-49573204 Msa0074690:three_prime_UTR 40.0%
CTGTGGGGTAAGAACCAATT+CGG - chr1_2:49570136-49570155 None:intergenic 45.0%
ATAGCGAGAATGGAGGGAAT+CGG - chr1_2:49570167-49570186 None:intergenic 45.0%
GTAAGTGATGTTCCAAAGGG+TGG - chr1_2:49571142-49571161 None:intergenic 45.0%
!! CATATGTGGTGGGTTTGAAC+AGG + chr1_2:49571717-49571736 Msa0074690:CDS 45.0%
!! CAAGCTCCTCACTTTTAGTG+TGG - chr1_2:49571749-49571768 None:intergenic 45.0%
CACCGTATCAGGATAAGGAA+AGG - chr1_2:49571785-49571804 None:intergenic 45.0%
TTGCCTTCAAGCTCTTCTGA+TGG + chr1_2:49571805-49571824 Msa0074690:CDS 45.0%
CTCTACACAACTTCCAGACT+CGG + chr1_2:49571861-49571880 Msa0074690:CDS 45.0%
! GTGGGTTGCCGAAATCATTA+TGG + chr1_2:49571974-49571993 Msa0074690:intron 45.0%
GAAATCATTATGGGCAACCG+TGG + chr1_2:49571984-49572003 Msa0074690:intron 45.0%
ACGGTTGCTAGCCATGATTT+CGG + chr1_2:49572098-49572117 Msa0074690:intron 45.0%
TCATTCGGCAGATAGAAAGC+TGG + chr1_2:49572179-49572198 Msa0074690:intron 45.0%
AACTACTTTCCACCCCCATT+GGG - chr1_2:49572446-49572465 None:intergenic 45.0%
ACGGTATGTGACGACAATGT+TGG - chr1_2:49572709-49572728 None:intergenic 45.0%
CAGAAGGGCAGCTATTCTAA+AGG + chr1_2:49572793-49572812 Msa0074690:CDS 45.0%
GAATCGGAAACTTCGCTGTG+GGG - chr1_2:49570151-49570170 None:intergenic 50.0%
GGAATCGGAAACTTCGCTGT+GGG - chr1_2:49570152-49570171 None:intergenic 50.0%
! GATCGGTTCCGATCGAACAA+AGG + chr1_2:49570420-49570439 Msa0074690:five_prime_UTR 50.0%
GGTACGCGAGCTCTATGATT+AGG - chr1_2:49571413-49571432 None:intergenic 50.0%
CACTCTCCTGCGAATGTTGT+GGG + chr1_2:49571565-49571584 Msa0074690:CDS 50.0%
ACTCTCCTGCGAATGTTGTG+GGG + chr1_2:49571566-49571585 Msa0074690:CDS 50.0%
ATTGGGGAGGGACACATATG+TGG + chr1_2:49571703-49571722 Msa0074690:CDS 50.0%
GGCAACACCGTATCAGGATA+AGG - chr1_2:49571790-49571809 None:intergenic 50.0%
CTTGAAGGCAACACCGTATC+AGG - chr1_2:49571796-49571815 None:intergenic 50.0%
TCGCCATCAGAAGAGCTTGA+AGG - chr1_2:49571811-49571830 None:intergenic 50.0%
! TTCAAGCTCTTCTGATGGCG+AGG + chr1_2:49571810-49571829 Msa0074690:CDS 50.0%
!! TGGTGGGTTAGCCGAAATCA+TGG - chr1_2:49572112-49572131 None:intergenic 50.0%
ATAGAAAGCTGGTCGCTCCA+AGG + chr1_2:49572190-49572209 Msa0074690:intron 50.0%
TAGAAAGCTGGTCGCTCCAA+GGG + chr1_2:49572191-49572210 Msa0074690:intron 50.0%
ATAGAAGCTGGTCACCCCAA+TGG + chr1_2:49572428-49572447 Msa0074690:intron 50.0%
TAGAAGCTGGTCACCCCAAT+GGG + chr1_2:49572429-49572448 Msa0074690:intron 50.0%
ACTACTTTCCACCCCCATTG+GGG - chr1_2:49572445-49572464 None:intergenic 50.0%
CAACTACTTTCCACCCCCAT+TGG - chr1_2:49572447-49572466 None:intergenic 50.0%
CAATGGGGGTGGAAAGTAGT+TGG + chr1_2:49572445-49572464 Msa0074690:intron 50.0%
! ACAAGTTTTGCAGGTGCCTG+TGG - chr1_2:49572598-49572617 None:intergenic 50.0%
CACCGGATCATACACATCAG+GGG - chr1_2:49572686-49572705 None:intergenic 50.0%
GCACCGGATCATACACATCA+GGG - chr1_2:49572687-49572706 None:intergenic 50.0%
TGTGACGACAATGTTGGCAC+CGG - chr1_2:49572703-49572722 None:intergenic 50.0%
TGGCCAGAATCTTGTGGCAA+AGG + chr1_2:49572853-49572872 Msa0074690:CDS 50.0%
ACCGAAAGTCCTTGCCATGT+CGG + chr1_2:49572961-49572980 Msa0074690:CDS 50.0%
TCCGACATGGCAAGGACTTT+CGG - chr1_2:49572965-49572984 None:intergenic 50.0%
ATAGCTTCTCCGACATGGCA+AGG - chr1_2:49572973-49572992 None:intergenic 50.0%
TGCTCATAGCTTCTCCGACA+TGG - chr1_2:49572978-49572997 None:intergenic 50.0%
GGGAATCGGAAACTTCGCTG+TGG - chr1_2:49570153-49570172 None:intergenic 55.0%
CCACAACATTCGCAGGAGAG+TGG - chr1_2:49571567-49571586 None:intergenic 55.0%
CCACTCTCCTGCGAATGTTG+TGG + chr1_2:49571564-49571583 Msa0074690:CDS 55.0%
GGGAGGGACACATATGTGGT+GGG + chr1_2:49571707-49571726 Msa0074690:CDS 55.0%
! AAGCTCTTCTGATGGCGAGG+AGG + chr1_2:49571813-49571832 Msa0074690:CDS 55.0%
! TCCAGACTCGGTTTCTCAGC+CGG + chr1_2:49571873-49571892 Msa0074690:CDS 55.0%
AGAAAGCTGGTCGCTCCAAG+GGG + chr1_2:49572192-49572211 Msa0074690:intron 55.0%
CAACTACTTTCCACCCCCCT+TGG - chr1_2:49572210-49572229 None:intergenic 55.0%
CAAGGGGGGTGGAAAGTAGT+TGG + chr1_2:49572208-49572227 Msa0074690:intron 55.0%
AGAAGCTGGTCACCCCAATG+GGG + chr1_2:49572430-49572449 Msa0074690:intron 55.0%
TTTCTCGCGGCTACCCTTCA+TGG - chr1_2:49572626-49572645 None:intergenic 55.0%
GGTAGCCGCGAGAAACACTT+GGG + chr1_2:49572631-49572650 Msa0074690:CDS 55.0%
GCGATCCCAAGTGTTTCTCG+CGG - chr1_2:49572639-49572658 None:intergenic 55.0%
GGCCCCTGATGTGTATGATC+CGG + chr1_2:49572681-49572700 Msa0074690:CDS 55.0%
! GGCACCGGATCATACACATC+AGG - chr1_2:49572688-49572707 None:intergenic 55.0%
TGGCAAGGACTTTCGGTAGC+TGG - chr1_2:49572958-49572977 None:intergenic 55.0%
TCGCACCCCACAACATTCGC+AGG - chr1_2:49571574-49571593 None:intergenic 60.0%
GGGGAGGGACACATATGTGG+TGG + chr1_2:49571706-49571725 Msa0074690:CDS 60.0%
! TCTGATGGCGAGGAGGCTGA+TGG + chr1_2:49571820-49571839 Msa0074690:CDS 60.0%
ACCGGCTGAGAAACCGAGTC+TGG - chr1_2:49571877-49571896 None:intergenic 60.0%
GAAAGCTGGTCGCTCCAAGG+GGG + chr1_2:49572193-49572212 Msa0074690:intron 60.0%
AAAGCTGGTCGCTCCAAGGG+GGG + chr1_2:49572194-49572213 Msa0074690:intron 60.0%
GAAGCTGGTCACCCCAATGG+GGG + chr1_2:49572431-49572450 Msa0074690:intron 60.0%
GGGTAGCCGCGAGAAACACT+TGG + chr1_2:49572630-49572649 Msa0074690:CDS 60.0%
GCTGGTCACCCCAATGGGGG+TGG + chr1_2:49572434-49572453 Msa0074690:intron 70.0%
GCTGGTCGCTCCAAGGGGGG+TGG + chr1_2:49572197-49572216 Msa0074690:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49570133 49573291 49570133 ID=Msa0074690;Name=Msa0074690
chr1_2 mRNA 49570133 49573291 49570133 ID=Msa0074690-mRNA-1;Parent=Msa0074690;Name=Msa0074690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=703|1|1|1|0.5|0.33|3|256|257
chr1_2 exon 49570133 49570817 49570133 ID=Msa0074690-mRNA-1:exon:15117;Parent=Msa0074690-mRNA-1
chr1_2 exon 49571538 49571894 49571538 ID=Msa0074690-mRNA-1:exon:15118;Parent=Msa0074690-mRNA-1
chr1_2 exon 49572601 49573291 49572601 ID=Msa0074690-mRNA-1:exon:15119;Parent=Msa0074690-mRNA-1
chr1_2 five_prime_UTR 49570133 49570817 49570133 ID=Msa0074690-mRNA-1:five_prime_utr;Parent=Msa0074690-mRNA-1
chr1_2 five_prime_UTR 49571538 49571555 49571538 ID=Msa0074690-mRNA-1:five_prime_utr;Parent=Msa0074690-mRNA-1
chr1_2 CDS 49571556 49571894 49571556 ID=Msa0074690-mRNA-1:cds;Parent=Msa0074690-mRNA-1
chr1_2 CDS 49572601 49573035 49572601 ID=Msa0074690-mRNA-1:cds;Parent=Msa0074690-mRNA-1
chr1_2 three_prime_UTR 49573036 49573291 49573036 ID=Msa0074690-mRNA-1:three_prime_utr;Parent=Msa0074690-mRNA-1
Gene Sequence

>Msa0074690

ATGGACATCCACTCTCCTGCGAATGTTGTGGGGTGCGATATCATAAGTAAACTTGAAATTACTTTTGGTGGGTCATTACATATACAAGATGATCAAAAGTTAGAACATGTATCTGATGATGATGAGGATGGTAGTAGTAACTGTAATATTGGGGAGGGACACATATGTGGTGGGTTTGAACAGGAAGAAACCACACTAAAAGTGAGGAGCTTGAAGGAGTGTTCAACCTTTCCTTATCCTGATACGGTGTTGCCTTCAAGCTCTTCTGATGGCGAGGAGGCTGATGGAGCATTGACAGAGTCACTCTCTACACAACTTCCAGACTCGGTTTCTCAGCCGGCACCTGCAAAACTTGTATCTGCCATGAAGGGTAGCCGCGAGAAACACTTGGGATCGCAAATGAAATTGTCTGTTAAATGGGCCCCTGATGTGTATGATCCGGTGCCAACATTGTCGTCACATACCGTGAGAACTAAGAAACAACATAAATCCCGGATCAAGAAGAGTGAAAAGAAAGGTGTAAAGAAAAGTCAGAAGGGCAGCTATTCTAAAGGGTGTAGCAGCAAAGATAAGAAGCAGTATCGCTATAGATGGCCAGAATCTTGTGGCAAAGGATTTGATGCTTCAATGGAATTAAATAATCTCGACGTTGCTGGCTATGATTCATACCATGCAACTAGCATCTCAAAAATACCAGCTACCGAAAGTCCTTGCCATGTCGGAGAAGCTATGAGCAACTTCCTTGATTTTGTCTCCTATATCAAGACTGCATAA

Protein sequence

>Msa0074690

MDIHSPANVVGCDIISKLEITFGGSLHIQDDQKLEHVSDDDEDGSSNCNIGEGHICGGFEQEETTLKVRSLKECSTFPYPDTVLPSSSSDGEEADGALTESLSTQLPDSVSQPAPAKLVSAMKGSREKHLGSQMKLSVKWAPDVYDPVPTLSSHTVRTKKQHKSRIKKSEKKGVKKSQKGSYSKGCSSKDKKQYRYRWPESCGKGFDASMELNNLDVAGYDSYHATSISKIPATESPCHVGEAMSNFLDFVSYIKTA*