AlfalfaGEDB | Msa1282570

M. sativa cultivar zhongmu-4 / Msa1282570

KEGG: K05666|K05670
GO: GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805
PFAM: PF00664.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1282570	XP_003627965.1	94.953	1387	62	1	4	1390	85	1463	0.0	2674

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1282570	sp\|Q8LGU1\|AB8C_ARATH	63.314	1382	499	3	8	1385	85	1462	0.0	1726

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1282570	G7LHL6	94.953	1387	62	1	4	1390	85	1463	0.0	2674

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa1282570	0.830302	3.169890e-55	-8.615850e-47
Msa0002700	Msa1282570	0.832263	1.044742e-55	-8.615850e-47
Msa0003340	Msa1282570	0.802430	5.631036e-49	-8.615850e-47
Msa0004180	Msa1282570	0.818931	1.515081e-52	-8.615850e-47
Msa0005500	Msa1282570	0.846078	2.722245e-59	-8.615850e-47
Msa0011060	Msa1282570	0.803920	2.768447e-49	-8.615850e-47
Msa0011410	Msa1282570	0.818807	1.616110e-52	-8.615850e-47
Msa0021570	Msa1282570	0.823653	1.233336e-53	-8.615850e-47
Msa0028940	Msa1282570	0.804901	1.729260e-49	-8.615850e-47
Msa0029280	Msa1282570	0.801963	7.026905e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1282570	MtrunA17_Chr8g0353781	94.953	1387	62	1	4	1390	85	1463	0.0	2674
Msa1282570	MtrunA17_Chr8g0341761	86.638	1377	170	2	4	1380	85	1447	0.0	2434
Msa1282570	MtrunA17_Chr8g0341751	85.758	1299	179	1	92	1390	4	1296	0.0	2316
Msa1282570	MtrunA17_Chr8g0341811	78.627	1282	229	5	99	1378	34	1272	0.0	2062
Msa1282570	MtrunA17_Chr8g0353541	87.222	1080	138	0	311	1390	1	1080	0.0	1962
Msa1282570	MtrunA17_Chr8g0341851	60.678	1386	520	11	12	1382	90	1465	0.0	1701
Msa1282570	MtrunA17_Chr6g0463131	45.382	1375	711	12	20	1375	114	1467	0.0	1203
Msa1282570	MtrunA17_Chr6g0463131	25.385	260	175	6	1135	1389	618	863	1.42e-15	82.8
Msa1282570	MtrunA17_Chr6g0463121	45.422	1376	708	13	20	1375	114	1466	0.0	1198
Msa1282570	MtrunA17_Chr6g0463121	23.950	238	165	3	1155	1389	638	862	1.04e-14	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1282570	AT3G21250.2	63.314	1382	499	3	8	1385	85	1462	0.0	1726
Msa1282570	AT3G21250.4	63.314	1382	499	3	8	1385	91	1468	0.0	1724
Msa1282570	AT3G21250.1	62.590	1382	498	4	8	1385	85	1451	0.0	1701
Msa1282570	AT3G21250.5	62.590	1382	498	4	8	1385	91	1457	0.0	1701
Msa1282570	AT3G21250.6	67.854	1011	322	1	375	1385	39	1046	0.0	1395
Msa1282570	AT3G21250.3	67.854	1011	322	1	375	1385	39	1046	0.0	1395
Msa1282570	AT3G59140.1	44.301	1395	727	17	6	1375	76	1445	0.0	1153
Msa1282570	AT1G04120.1	43.786	1400	732	15	32	1385	124	1514	0.0	1137
Msa1282570	AT1G04120.1	25.751	233	159	2	1155	1386	640	859	8.76e-14	77.4
Msa1282570	AT1G04120.2	43.643	1400	729	16	32	1385	124	1509	0.0	1128

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Find 251 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCCACATATAAGAAG+AGG	0.566314	8_3:-23149705	None:intergenic
AAAATGGTTTCAGCATTCAA+TGG	0.559309	8_3:-23150014	None:intergenic
AAACAAGGTCTTTCCATAGT+TGG	0.404925	8_3:+23149372	Msa1282570:CDS
AAAGTTCATGACTGGAGCTT+TGG	0.419603	8_3:-23152048	None:intergenic
AAATTCTAGGTAATGGAGGA+TGG	0.561759	8_3:+23151025	Msa1282570:intron
AACCACTCCAAGCGATGTCT+CGG	0.511786	8_3:-23152075	None:intergenic
AACCTTAGCTTGAATCATAT+TGG	0.292914	8_3:-23150099	None:intergenic
AACTGTAATAGACAGTGACA+TGG	0.728393	8_3:+23153646	Msa1282570:CDS
AAGAAAGAGCCAATCCCACA+CGG	0.665151	8_3:-23152434	None:intergenic
AAGGCCATGAAGATGGCAGC+CGG	0.620340	8_3:-23152593	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAACACAATACTAAAGAG+TGG	-	chr8_3:23148332-23148351	None:intergenic	30.0%
TCTAATGGTGCAAAAAAACA+TGG	-	chr8_3:23148367-23148386	None:intergenic	30.0%
AATATGCAGGTGAAATTTCA+TGG	+	chr8_3:23148434-23148453	Msa1282570:intron	30.0%
GCATTATCAAAGGATTCATT+TGG	+	chr8_3:23148725-23148744	Msa1282570:CDS	30.0%
GATTGTTCAAAGAGTCAAAT+TGG	+	chr8_3:23148768-23148787	Msa1282570:CDS	30.0%
TATTGTGCCTTCAAAAATCT+TGG	+	chr8_3:23148925-23148944	Msa1282570:CDS	30.0%
TTCAAAAATCTTGGTCACAT+AGG	+	chr8_3:23148934-23148953	Msa1282570:CDS	30.0%
AAAAGTCCACATATAAGAAG+AGG	-	chr8_3:23149708-23149727	None:intergenic	30.0%
TTATTGGATATCTCCTACAA+TGG	+	chr8_3:23149947-23149966	Msa1282570:CDS	30.0%
AAAATGGTTTCAGCATTCAA+TGG	-	chr8_3:23150017-23150036	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	23148286	23154102	23148286	ID=Msa1282570;Name=Msa1282570
chr8_3	mRNA	23148286	23154102	23148286	ID=Msa1282570-mRNA-1;Parent=Msa1282570;Name=Msa1282570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.91\|0.84\|1\|0.91\|0.84\|13\|127\|1390
chr8_3	exon	23148286	23148310	23148286	ID=Msa1282570-mRNA-1:exon:8245;Parent=Msa1282570-mRNA-1
chr8_3	exon	23148686	23150388	23148686	ID=Msa1282570-mRNA-1:exon:8246;Parent=Msa1282570-mRNA-1
chr8_3	exon	23150487	23150807	23150487	ID=Msa1282570-mRNA-1:exon:8247;Parent=Msa1282570-mRNA-1
chr8_3	exon	23150876	23150962	23150876	ID=Msa1282570-mRNA-1:exon:8248;Parent=Msa1282570-mRNA-1
chr8_3	exon	23151034	23151654	23151034	ID=Msa1282570-mRNA-1:exon:8249;Parent=Msa1282570-mRNA-1
chr8_3	exon	23151748	23151912	23151748	ID=Msa1282570-mRNA-1:exon:8250;Parent=Msa1282570-mRNA-1
chr8_3	exon	23151999	23152293	23151999	ID=Msa1282570-mRNA-1:exon:8251;Parent=Msa1282570-mRNA-1
chr8_3	exon	23152433	23152647	23152433	ID=Msa1282570-mRNA-1:exon:8252;Parent=Msa1282570-mRNA-1
chr8_3	exon	23152766	23153071	23152766	ID=Msa1282570-mRNA-1:exon:8253;Parent=Msa1282570-mRNA-1
chr8_3	exon	23153187	23153250	23153187	ID=Msa1282570-mRNA-1:exon:8254;Parent=Msa1282570-mRNA-1
chr8_3	exon	23153447	23153686	23153447	ID=Msa1282570-mRNA-1:exon:8255;Parent=Msa1282570-mRNA-1
chr8_3	exon	23153771	23153928	23153771	ID=Msa1282570-mRNA-1:exon:8256;Parent=Msa1282570-mRNA-1
chr8_3	exon	23154003	23154102	23154003	ID=Msa1282570-mRNA-1:exon:8257;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23148286	23148310	23148286	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23148686	23150388	23148686	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23150487	23150807	23150487	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23150876	23150962	23150876	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23151034	23151654	23151034	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23151748	23151912	23151748	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23151999	23152293	23151999	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23152433	23152647	23152433	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23152766	23153071	23152766	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23153187	23153250	23153187	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23153447	23153686	23153447	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	CDS	23153771	23153901	23153771	ID=Msa1282570-mRNA-1:cds;Parent=Msa1282570-mRNA-1
chr8_3	three_prime_UTR	23153902	23153928	23153902	ID=Msa1282570-mRNA-1:three_prime_utr;Parent=Msa1282570-mRNA-1
chr8_3	three_prime_UTR	23154003	23154102	23154003	ID=Msa1282570-mRNA-1:three_prime_utr;Parent=Msa1282570-mRNA-1

Gene Sequence

>Msa1282570

ATGGCTAACTTTTGGATTTCAATTGCTAAAACTGATAACTCTGAGGAACTGAATTTGTTAGTTTGCATTATCAAAGGATTCATTTGGATTTCTTTTGCTGTTTCTTTGATTGTTCAAAGAGTCAAATTGGTTAGAATATTAAACTCAATATGGTGGTTTTCTTCTTGTATATTGGTTTCATCTCTCAACATTGAAATTCTGTTAAAAAATCATGTCATTGAAACTTTTGATATAGTACAGTGGCTTGTACATTTCCTTCTTCTATATTGTGCCTTCAAAAATCTTGGTCACATAGGAAATAATAGAGTCCAAGAATGTTTATCTGAGCCACTATTAGCTCAAAAAAATGAAACTGCACAAACTGAATTAGTTCATGCTACTTTTCTTAGCAAGTTGATTCTCTCTTGGGTTAATTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAGCTGTTGAAGACATTCCTTCCCTTGTTTCTGACGATGAAGCAAACATGGCTTATAAAAAATTTGTTCATACTTGGGAATCACTTGTTAGAGAGAGGACTAAGAACAATACAAAGAGTTTGGTTCTCTGGTCTATAGTTAGATCATACCTAAAAGAAAACATATTAATAGCATTTTATGCATTAATCAGAACTATAGCTGTCGTAGTTTCACCTTTAATACTATATGCTTTTGTTAAATACTCAAATAGAACTGAGGAAGATTTCAAACAAGGTCTTTCCATAGTTGGTTTTTTGGTTGTCACTAAAGTCTTTGAGTCGGTATCTCAAAGACATTGGTTTTTTAACTCGAGGAGGTCAGGTATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTATCAGAAGCAGCTAAAGCTTTCTAGCTCGGCAAGGACAAGACACTCGGCCGGAGAAATTGTGAATTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTCTGCCTTGCAACTTGTTCTTTCCATCGGTGTCCTTTTTATTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTGCCTCTTCTTATATGTGGACTTTTCAATGTACCATTTGCAAGGATCCTACAAAATTGTCAATCACAGTTTATGATTGCACAGGACGAACGTCTTCGAACAACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTCGAGTCGCTGCGCGATAAAGAGTTCGTATGGTTGTCTAAGGCACAGATCCTGAAAGCTTCTGGTTCATTTCTTTATTGGATATCTCCTACAATGGTTTCTGCTGTTGTTTTCCTTGCATGTTCTGTCACTAAAAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTAAGGAACATGGGAGAACCTGTTAGAACTATCCCAGAGGCTCTATCCAATATGATTCAAGCTAAGGTTTCATTCGATCGTCTTAATAACTTTTTGCTTGATGAAGACCTTAACAATAATGAGAGTGAGAAAAACTTAAACCAGTGTTCAGTTAATGCTTTACAAATTCAAGATGGAAACTTCATTTGGGATCATGAATCTGTGTCTCCAGCCTTAAAAGATGTTAATTTAGAGATAAAATGGAGACAGAAAATTGCAGTTTGTGGACCAGTTGGATCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATCCCTAAGATTTCAGGAACTGTTAATGTAGGTGGCACACTGGCCTATGTCTCTCAAACTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGAAAACCAATGGACAAAGCAAGATATTGGAAAGCAATTAAAGCTTGTGCTTTAGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTCGATGATCCTTTCAGTGCAGTTGATGCTCATACAGCTGCAATACTATTCAATGACTGTGTCATGACTGCTTTAAGAGACAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTCGATACTATCTTGGTAATGGAGGATGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTAAAAGCTGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTAATGAGTTGAATCAAGATAGTGAAAATAATGGAGGTTCCGAAAATGAGGTTTCGTCTAATCCTCAAGACTCTCATGGTTTTCATCTCACTAAAAATCAAAGTGAAGGAGAGATTTCTAGCATCAAGGGTTCAATTGGTGCACAACTTACAGAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCACTTTGGGATTACATTAATTATTCCAAAGGGACATTGATGTTGTGTTTGGTCATATTAGGACAGTGTAGTTTTTTGGCTTTGCAGACTTCATCGAACTTTTGGCTTGCTACAGCCATTGAAATTCCAAAAGTAACTGATGCCACCTTGATTGGAGTTTATGCATTACTCTCTTTTTCTAGTACTTCTTTTGTATATGTAAGGTCTTACTTTGCTGCACTTTTGGGATTAAAAGCTTCTACTAATTTCTTCTCAAGCTTCACTACATCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCATCGGATTTGAGTATTTTGGACTTTGATATACCTTATTCCCTCACCTGTGTAGCGATTGTAGCAATTGAAGTTTTGGTGATGATTTTTGTGATTGCTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATTCATTCAGCAATATTATCAAGCCACTGCAAGGGAACTTATACGGATCAACGGAACCACCAAAGCTCCAGTCATGAACTTTGCAGCCGAGACATCGCTTGGAGTGGTTACTGTACGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCAAATGTGGCAATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCTAAATTTGACTGTCGTCACTGCAGCTTTGTTACTCATTCTACTTCCTCAAAGATATCTATCCCCAGGCCGTGTGGGATTGGCTCTTTCTTATGCTCTTACGTTGAATGGAGCTCAAATATTCTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATCTCTGTCGAAAGAATCAAGCAATTCATTCACATACCAGCTGAGCCTCCTGCCATTGTGGATCATAACCGGCTGCCATCTTCATGGCCTTCCAAGGGCAACATTGATCTTCAAGGGTTAGAGATTCGATATCGACCTAATGCCCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGGAGGAAGTAGGGTCGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTGATTAGCGCTTTGTTTCGTTTAGTTGAGCCTTCAAGAGGTGATATTCTTATTGATGGAATAAACATTTGTTCAATGGGGTTGAAGGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACAAACCTGGACCCACTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGCCAATTGTTTTGCCTCGGACGAGTTCTACTTAAGAGGAACAAAATTCTTGTTTTGGATGAAGCTACTGCATCCATTGATTCAGCCACAGATGCCATTCTACAAAGAATAATTAGACAAGAATTTGAAGAATGCACAGTTATAACTGTTGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCTTATGGGAAAATGGTGGAATATGACGAACCTTCAAAGCTAATGGACGCTGACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAAGAATTACCTTCCAAATATCAGCAGGAAGCATCAATGA

Protein sequence

>Msa1282570

MANFWISIAKTDNSEELNLLVCIIKGFIWISFAVSLIVQRVKLVRILNSIWWFSSCILVSSLNIEILLKNHVIETFDIVQWLVHFLLLYCAFKNLGHIGNNRVQECLSEPLLAQKNETAQTELVHATFLSKLILSWVNSLLSLGYSKPLAVEDIPSLVSDDEANMAYKKFVHTWESLVRERTKNNTKSLVLWSIVRSYLKENILIAFYALIRTIAVVVSPLILYAFVKYSNRTEEDFKQGLSIVGFLVVTKVFESVSQRHWFFNSRRSGMKMRSALMVAVYQKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHITWTSALQLVLSIGVLFIVVGIGALPGLVPLLICGLFNVPFARILQNCQSQFMIAQDERLRTTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKASGSFLYWISPTMVSAVVFLACSVTKSAPLNAETIFTVLATLRNMGEPVRTIPEALSNMIQAKVSFDRLNNFLLDEDLNNNESEKNLNQCSVNALQIQDGNFIWDHESVSPALKDVNLEIKWRQKIAVCGPVGSGKSSLLYAILGEIPKISGTVNVGGTLAYVSQTSWIQSGTVQDNILFGKPMDKARYWKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRDKTVILVTHQVEFLSEVDTILVMEDGKVIQSGSYENLLKAGTAFELLVSAHKDTINELNQDSENNGGSENEVSSNPQDSHGFHLTKNQSEGEISSIKGSIGAQLTEEEEKVIGNVGWKPLWDYINYSKGTLMLCLVILGQCSFLALQTSSNFWLATAIEIPKVTDATLIGVYALLSFSSTSFVYVRSYFAALLGLKASTNFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSLTCVAIVAIEVLVMIFVIASVTWQVLIVAVPAMVASIFIQQYYQATARELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVAMEWLVLRIEALLNLTVVTAALLLILLPQRYLSPGRVGLALSYALTLNGAQIFWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDHNRLPSSWPSKGNIDLQGLEIRYRPNAPLVLKGITCTFKGGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRIIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSKLMDADSSFSKLVAEYWSSCRKNYLPNISRKHQ*