AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800400 MtrunA17_Chr3g0129101 97.151 351 10 0 1 351 1 351 0.0 699
Msa0800400 MtrunA17_Chr8g0382921 78.717 343 59 5 12 351 11 342 0.0 532
Msa0800400 MtrunA17_Chr3g0120791 53.431 204 92 3 149 351 147 348 5.21e-70 232
Msa0800400 MtrunA17_Chr4g0012061 43.976 166 84 3 188 351 140 298 4.09e-33 130
Msa0800400 MtrunA17_Chr7g0230671 42.784 194 97 4 160 351 105 286 6.86e-32 126
Msa0800400 MtrunA17_Chr6g0465161 43.421 152 80 2 204 353 129 276 1.35e-31 125
Msa0800400 MtrunA17_Chr1g0199921 53.279 122 56 1 207 327 203 324 1.49e-29 120
Msa0800400 MtrunA17_Chr1g0148121 39.241 158 90 2 185 340 116 269 5.06e-27 112
Msa0800400 MtrunA17_Chr3g0136721 48.148 108 55 1 207 313 138 245 5.20e-27 112
Msa0800400 MtrunA17_Chr1g0147481 38.012 171 90 4 171 330 86 251 1.44e-25 108
Msa0800400 MtrunA17_Chr4g0057941 45.455 121 58 3 214 332 78 192 1.63e-23 101
Msa0800400 MtrunA17_Chr5g0428451 37.795 127 77 1 206 330 127 253 8.59e-23 99.4
Msa0800400 MtrunA17_Chr1g0169361 36.872 179 99 4 183 351 155 329 1.47e-22 99.4
Msa0800400 MtrunA17_Chr8g0360981 36.434 129 68 3 200 314 203 331 1.06e-17 84.3
Msa0800400 MtrunA17_Chr4g0048521 33.333 132 79 2 200 322 214 345 1.51e-15 77.8
Msa0800400 MtrunA17_Chr5g0433911 37.719 114 69 2 218 330 77 189 3.67e-15 76.6
Msa0800400 MtrunA17_Chr2g0281061 35.345 116 66 2 200 306 211 326 6.80e-14 72.8
Msa0800400 MtrunA17_Chr1g0193751 33.333 126 82 2 204 327 227 352 9.41e-14 72.4
Msa0800400 MtrunA17_Chr3g0113361 32.824 131 86 2 204 332 87 217 2.87e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800400 AT5G64940.1 71.598 338 77 7 23 351 39 366 1.81e-154 452
Msa0800400 AT5G64940.2 71.598 338 77 7 23 351 39 366 1.81e-154 452
Msa0800400 AT3G07700.1 47.872 282 123 7 71 351 77 335 5.88e-73 239
Msa0800400 AT3G07700.2 47.872 282 123 7 71 351 77 335 5.88e-73 239
Msa0800400 AT3G07700.4 47.872 282 123 7 71 351 77 335 5.88e-73 239
Msa0800400 AT3G07700.3 47.872 282 123 7 71 351 77 335 1.52e-72 239
Msa0800400 AT1G79600.1 38.384 198 108 3 156 351 108 293 6.06e-34 133
Msa0800400 AT1G71810.1 40.341 176 94 3 185 353 96 267 2.76e-30 122
Msa0800400 AT5G24970.3 42.105 152 82 3 200 350 134 280 5.27e-30 121
Msa0800400 AT5G24970.2 42.105 152 82 3 200 350 173 319 6.49e-30 121
Msa0800400 AT2G39190.1 51.639 122 58 1 207 327 202 323 3.61e-29 116
Msa0800400 AT4G31390.2 30.065 306 181 8 49 340 19 305 7.91e-29 117
Msa0800400 AT4G31390.1 30.065 306 181 8 49 340 19 305 1.12e-28 117
Msa0800400 AT2G39190.2 51.639 122 58 1 207 327 202 323 1.85e-28 117
Msa0800400 AT5G24970.1 40.789 152 81 4 200 350 134 277 2.10e-26 110
Msa0800400 AT4G24810.5 43.802 121 65 2 214 332 32 151 4.18e-25 103
Msa0800400 AT5G24810.1 39.490 157 84 2 185 330 69 225 4.91e-25 107
Msa0800400 AT4G24810.4 43.802 121 65 2 214 332 32 151 5.41e-25 103
Msa0800400 AT4G24810.3 43.802 121 65 2 214 332 32 151 1.08e-24 104
Msa0800400 AT4G24810.6 43.802 121 65 2 214 332 32 151 1.27e-24 104
Msa0800400 AT4G24810.1 43.802 121 65 2 214 332 32 151 1.27e-24 104
Msa0800400 AT3G24190.1 39.375 160 89 3 196 351 182 337 1.79e-24 105
Msa0800400 AT4G24810.2 43.802 121 65 2 214 332 75 194 1.85e-24 104
Msa0800400 AT5G50330.1 43.802 121 65 2 214 332 75 194 5.35e-24 103
Msa0800400 AT5G05200.1 34.395 157 95 4 179 330 101 254 2.47e-22 98.6
Msa0800400 AT5G24810.2 33.511 188 83 3 185 330 69 256 1.89e-20 93.6
Msa0800400 AT4G31390.3 41.509 106 60 1 237 340 1 106 2.57e-17 83.6
Msa0800400 AT1G65950.2 37.879 132 76 4 218 348 113 239 7.47e-17 82.0
Msa0800400 AT1G65950.1 37.879 132 76 4 218 348 113 239 7.84e-17 82.0
Msa0800400 AT5G50330.2 36.134 119 61 2 214 332 75 178 3.86e-16 79.7
Msa0800400 AT1G11390.1 33.333 132 79 2 200 322 209 340 1.84e-15 78.2
Msa0800400 AT1G61640.2 31.013 158 93 4 207 355 213 363 1.35e-14 75.1
Msa0800400 AT1G61640.3 31.013 158 93 4 207 355 213 363 1.36e-14 75.5
Msa0800400 AT1G61640.1 31.013 158 93 4 207 355 213 363 1.74e-14 75.1
Msa0800400 AT4G01660.1 35.088 114 71 3 219 330 240 352 2.27e-12 68.6
Msa0800400 AT2G40090.1 33.588 131 85 2 204 332 89 219 8.06e-12 66.6

Find 104 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTAACCTTCATCTTTA+AGG 0.066083 5_3:+13776206 Msa0800400:CDS
GGTCCTACATTCATTAAAAT+TGG 0.114774 5_3:+13776755 Msa0800400:CDS
TCCAGAGAACCTTAGAAATT+TGG 0.122083 5_3:+13776178 Msa0800400:CDS
CCAGAGAACCTTAGAAATTT+GGG 0.238920 5_3:+13776179 Msa0800400:CDS
AACAAATCCCCAAATTTCTA+AGG 0.269782 5_3:-13776187 None:intergenic
CTCTTGAAACTTCCAATTCA+TGG 0.292875 5_3:+13775417 Msa0800400:exon
CCCAAATTTCTAAGGTTCTC+TGG 0.304189 5_3:-13776179 None:intergenic
AACGGAAGTTCAGTAAAATA+TGG 0.325287 5_3:+13775703 Msa0800400:CDS
CCAAGACTTGCAGCAGCTAT+TGG 0.332297 5_3:-13778023 None:intergenic
CTCTTTGCACCATCTGACTT+TGG 0.338959 5_3:-13779260 None:intergenic
AAGAGAAGGTTGGAGGAGAT+TGG 0.346449 5_3:+13775796 Msa0800400:CDS
TGACCAGTTGTCTGAACTTC+AGG 0.347903 5_3:+13776823 Msa0800400:CDS
TGGAGAAAGGAAATGGAGTT+CGG 0.349568 5_3:-13775467 None:intergenic
TGGCAGGTAGCCGTTGCTCC+TGG 0.389844 5_3:+13776120 Msa0800400:intron
AAGAGGTAGTAGCCATGAAT+TGG 0.391035 5_3:-13775429 None:intergenic
TAACCTTCATCTTTAAGGCT+TGG 0.399298 5_3:+13776211 Msa0800400:CDS
GGTGGATGTTGAAGCTTCTA+AGG 0.411175 5_3:+13775756 Msa0800400:CDS
GCCTCCCGTGCCGGCAGTAA+TGG 0.411818 5_3:+13775649 Msa0800400:CDS
CAGATGGTGCAAAGAGGGAT+TGG 0.418992 5_3:+13779267 Msa0800400:CDS
AAGGAAAGCATCTTGAGATT+AGG 0.419226 5_3:+13776734 Msa0800400:CDS
TATGTTAACGGCGCCGTTAA+CGG 0.419710 5_3:+13775685 Msa0800400:CDS
TGATTTGTGGAGAAAGGAAA+TGG 0.420740 5_3:-13775474 None:intergenic
ATGTGCCTCTGTCTTATATC+AGG 0.422634 5_3:+13779307 Msa0800400:CDS
CTTCATCTTTAAGGCTTGGT+TGG 0.423521 5_3:+13776215 Msa0800400:CDS
GTCCTACATTCATTAAAATT+GGG 0.424402 5_3:+13776756 Msa0800400:CDS
TTACCTGAAGTTCAGACAAC+TGG 0.434709 5_3:-13776826 None:intergenic
GACCCTTGCCAAGTGGCTTA+AGG 0.434972 5_3:+13776715 Msa0800400:CDS
AAAGCACTCTCAGAGGGAAA+TGG 0.437529 5_3:-13777936 None:intergenic
GGAGAAAGGAAATGGAGTTC+GGG 0.441660 5_3:-13775466 None:intergenic
CTGCTCCATTACTGCCGGCA+CGG 0.442108 5_3:-13775654 None:intergenic
GGAGGTGGAAAAGCGGGAAA+TGG 0.457956 5_3:-13775530 None:intergenic
GGATGGAAGGAAGAGAAGGT+TGG 0.459796 5_3:+13775786 Msa0800400:CDS
CCAATAGCTGCTGCAAGTCT+TGG 0.469773 5_3:+13778023 Msa0800400:CDS
GCTATTGTTGAAGAAGAGCT+TGG 0.471116 5_3:+13777960 Msa0800400:CDS
TGCTCCATTACTGCCGGCAC+GGG 0.472875 5_3:-13775653 None:intergenic
TTCCTTAAGCCACTTGGCAA+GGG 0.473979 5_3:-13776717 None:intergenic
GGTTCATCGCGCAAGATTGA+AGG 0.476419 5_3:+13778873 Msa0800400:CDS
AGTTCAGTAAAATATGGAAA+TGG 0.477517 5_3:+13775709 Msa0800400:CDS
CGGTGTAGCTTCTGCGGTGG+TGG 0.478693 5_3:+13775735 Msa0800400:CDS
AACGGAGTTGCCTCCCGTGC+CGG 0.479571 5_3:+13775640 Msa0800400:CDS
GGAGAGTGATTTGTGGAGAA+AGG 0.479736 5_3:-13775480 None:intergenic
GCCGGCAGTAATGGAGCAGC+AGG 0.479782 5_3:+13775658 Msa0800400:CDS
GACGTGGAATGGAGCGGAAA+CGG 0.480749 5_3:+13775622 Msa0800400:CDS
AATCAGAAGTTCTCTTACAA+AGG 0.481576 5_3:+13776240 Msa0800400:CDS
AACGAGTTAACGACGTGGAA+TGG 0.482769 5_3:+13775611 Msa0800400:CDS
GACATTGGAGGTGGAAAAGC+GGG 0.490015 5_3:-13775536 None:intergenic
GCAGCAGGAGGTTATGTTAA+CGG 0.490223 5_3:+13775673 Msa0800400:CDS
GTAAAATATGGAAATGGAAA+CGG 0.490999 5_3:+13775715 Msa0800400:CDS
GTTGTTAAAGTGCAAAGGCC+TGG 0.497461 5_3:+13778907 Msa0800400:CDS
GATGCTTTCCTTAAGCCACT+TGG 0.503755 5_3:-13776723 None:intergenic
TGTAGCTTCTGCGGTGGTGG+TGG 0.504685 5_3:+13775738 Msa0800400:CDS
TGGAAGGAAGAGAAGGTTGG+AGG 0.508251 5_3:+13775789 Msa0800400:CDS
AGATGGTGCAAAGAGGGATT+GGG 0.510352 5_3:+13779268 Msa0800400:CDS
CAACCAAGCCTTAAAGATGA+AGG 0.512419 5_3:-13776214 None:intergenic
TTTCCTTAAGCCACTTGGCA+AGG 0.517821 5_3:-13776718 None:intergenic
AGTGCAAAGGCCTGGTCTCA+AGG 0.521155 5_3:+13778915 Msa0800400:CDS
TCCATTACTGCCGGCACGGG+AGG 0.528052 5_3:-13775650 None:intergenic
AATCTACTCCAACGACCTCC+AGG 0.529783 5_3:-13776138 None:intergenic
AGGAAGAATGTCCACTCTAG+TGG 0.530351 5_3:-13776789 None:intergenic
CGGTTGCGGAGAGTGATTTG+TGG 0.531780 5_3:-13775487 None:intergenic
ATGTGACAGTGAAGAAGAAA+CGG 0.534491 5_3:-13775313 None:intergenic
GCTTCTAAGGTGAATGAGGA+TGG 0.546910 5_3:+13775769 Msa0800400:CDS
TCGCGCAAGATTGAAGGGAC+AGG 0.547008 5_3:+13778879 Msa0800400:CDS
ATGAGGATGGAAGGAAGAGA+AGG 0.551335 5_3:+13775782 Msa0800400:CDS
AAAGTCAGATGGTGCAAAGA+GGG 0.557547 5_3:+13779262 Msa0800400:CDS
TCCTGCTGCTCCATTACTGC+CGG 0.559061 5_3:-13775659 None:intergenic
CTAAGGTGAATGAGGATGGA+AGG 0.570437 5_3:+13775773 Msa0800400:CDS
AGCGTGTGGAGAAAGATAAA+CGG 0.572026 5_3:-13775507 None:intergenic
CCGTTGCTCCTGGAGGTCGT+TGG 0.574360 5_3:+13776130 Msa0800400:CDS
GGGTAGGTGAAGAAGAGAAG+AGG 0.578943 5_3:-13775446 None:intergenic
CAGAGAACCTTAGAAATTTG+GGG 0.579220 5_3:+13776180 Msa0800400:CDS
AAAATTGATCCAAAGTCAGA+TGG 0.579221 5_3:+13779251 Msa0800400:CDS
GAAGAGCTTGGAGCTTCTGT+AGG 0.582378 5_3:+13777972 Msa0800400:CDS
GTTAACTCGTTCTGCTATCG+CGG 0.584474 5_3:-13775599 None:intergenic
GTTCATCGCGCAAGATTGAA+GGG 0.586091 5_3:+13778874 Msa0800400:CDS
AGGTTGTTGTTAAAGTGCAA+AGG 0.597334 5_3:+13778902 Msa0800400:CDS
ATAGCTAAAGCACTCTCAGA+GGG 0.599225 5_3:-13777942 None:intergenic
GCGAAGAGTGACATTGGAGG+TGG 0.599439 5_3:-13775545 None:intergenic
AAAGGAAATGGAGTTCGGGT+AGG 0.601045 5_3:-13775462 None:intergenic
TGTGGCGCGAAGAGTGACAT+TGG 0.606883 5_3:-13775551 None:intergenic
TGGAAACGGTGTAGCTTCTG+CGG 0.609904 5_3:+13775729 Msa0800400:CDS
TGGAGAAAGATAAACGGTTG+CGG 0.617246 5_3:-13775501 None:intergenic
CAGGTAGCCGTTGCTCCTGG+AGG 0.621130 5_3:+13776123 Msa0800400:intron
CAAAGTCAGATGGTGCAAAG+AGG 0.627900 5_3:+13779261 Msa0800400:CDS
AAAGCGGGAAATGGAGCGTG+TGG 0.628230 5_3:-13775521 None:intergenic
GCACTCTCAGAGGGAAATGG+AGG 0.630249 5_3:-13777933 None:intergenic
GTTAACGACGTGGAATGGAG+CGG 0.632091 5_3:+13775616 Msa0800400:CDS
TGAAGCTTCTAAGGTGAATG+AGG 0.633408 5_3:+13775765 Msa0800400:CDS
TGACATTGGAGGTGGAAAAG+CGG 0.634527 5_3:-13775537 None:intergenic
AATAGCTAAAGCACTCTCAG+AGG 0.637182 5_3:-13777943 None:intergenic
CGCAAGATTGAAGGGACAGG+AGG 0.637909 5_3:+13778882 Msa0800400:CDS
GGCGGAAGACCCTTGCCAAG+TGG 0.644021 5_3:+13776708 Msa0800400:CDS
GCAGCAGTTCTCCACTAGAG+TGG 0.644408 5_3:+13776778 Msa0800400:CDS
AACTGGTCAACATATTCTTG+AGG 0.645528 5_3:-13776809 None:intergenic
GGCAGTAATGGAGCAGCAGG+AGG 0.651839 5_3:+13775661 Msa0800400:CDS
AGATTGGAAAAGAAGACGCG+TGG 0.657644 5_3:+13775812 Msa0800400:CDS
CCAACGACCTCCAGGAGCAA+CGG 0.665303 5_3:-13776130 None:intergenic
CGCGTGGTTTAAACAAACCG+AGG 0.675976 5_3:+13775828 Msa0800400:CDS
AAACGGTGTAGCTTCTGCGG+TGG 0.690273 5_3:+13775732 Msa0800400:CDS
GGCGCGAAGAGTGACATTGG+AGG 0.700758 5_3:-13775548 None:intergenic
ACAGTGAAGAAGAAACGGAG+TGG 0.715477 5_3:-13775308 None:intergenic
CATCACCTGATATAAGACAG+AGG 0.734188 5_3:-13779312 None:intergenic
ACTTACAGGAGGAATGACCG+AGG 0.769384 5_3:+13776670 Msa0800400:intron
AGCAGAACGAGTTAACGACG+TGG 0.776174 5_3:+13775606 Msa0800400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAGTGTTTAATTATTA+GGG + chr5_3:13777061-13777080 Msa0800400:intron 10.0%
!! GTTATTATAACTAACTATAA+CGG - chr5_3:13775871-13775890 None:intergenic 15.0%
!! CTAATAATTAAACACTATTA+TGG - chr5_3:13777062-13777081 None:intergenic 15.0%
!! CATAATAGTGTTTAATTATT+AGG + chr5_3:13777060-13777079 Msa0800400:intron 15.0%
!! ATTATAAACTCAATAATACA+AGG - chr5_3:13777755-13777774 None:intergenic 15.0%
!! CATATTATTAAAAAGATATG+CGG - chr5_3:13778065-13778084 None:intergenic 15.0%
!! ATAAATATTGCATAATTGAA+AGG + chr5_3:13778125-13778144 Msa0800400:intron 15.0%
!! ACTATATGATAAAAATTCTT+AGG - chr5_3:13778437-13778456 None:intergenic 15.0%
!!! ATTTTTATCATATAGTTTGA+TGG + chr5_3:13778441-13778460 Msa0800400:intron 15.0%
!!! ATATAAGAGATTGATTTTCA+TGG - chr5_3:13775356-13775375 None:intergenic 20.0%
!! AACAATGTTATTAGATGTAA+TGG - chr5_3:13776036-13776055 None:intergenic 20.0%
!!! TGTTTCTTTATTGAATTTTG+AGG + chr5_3:13776601-13776620 Msa0800400:intron 20.0%
!! AAAGGAAAAAGAAAAAAAAG+AGG - chr5_3:13777015-13777034 None:intergenic 20.0%
!! ATAATTAAACACTATTATGG+TGG - chr5_3:13777059-13777078 None:intergenic 20.0%
!!! ATCCTATTAAATGATAATGA+GGG - chr5_3:13777104-13777123 None:intergenic 20.0%
!!! AATCCTATTAAATGATAATG+AGG - chr5_3:13777105-13777124 None:intergenic 20.0%
!! TAGAATTATTCAGTATTTGA+AGG - chr5_3:13777242-13777261 None:intergenic 20.0%
!! GATTGAGAAGAAATAATTAA+CGG - chr5_3:13777466-13777485 None:intergenic 20.0%
!!! AACATTTGTTAAGAAATCAT+GGG + chr5_3:13777635-13777654 Msa0800400:intron 20.0%
!! AAATGCTCCTAAATATTATT+TGG - chr5_3:13778198-13778217 None:intergenic 20.0%
!!! AAATAATATTTAGGAGCATT+TGG + chr5_3:13778197-13778216 Msa0800400:intron 20.0%
!! ATTCTTAAGAAATTTCTCTT+CGG - chr5_3:13778627-13778646 None:intergenic 20.0%
!!! ATTTCTTAAGAATCTGATTT+TGG + chr5_3:13778634-13778653 Msa0800400:intron 20.0%
!! ATATTGATCTAAAAAACCTT+AGG + chr5_3:13778947-13778966 Msa0800400:CDS 20.0%
!! TATTGATCTAAAAAACCTTA+GGG + chr5_3:13778948-13778967 Msa0800400:CDS 20.0%
!! TTTATATGGAAAACCTTATA+AGG - chr5_3:13778985-13779004 None:intergenic 20.0%
! AGTTCAGTAAAATATGGAAA+TGG + chr5_3:13775709-13775728 Msa0800400:CDS 25.0%
! GTAAAATATGGAAATGGAAA+CGG + chr5_3:13775715-13775734 Msa0800400:CDS 25.0%
! GTTAGTTAAGTTACACTTAA+TGG - chr5_3:13775992-13776011 None:intergenic 25.0%
!!! TATGATTGTCCGATTTTTTT+TGG + chr5_3:13776100-13776119 Msa0800400:intron 25.0%
! ATGATTCTTCAAAATTCCAA+CGG - chr5_3:13776291-13776310 None:intergenic 25.0%
! TAAACAGATAAGTAGATTTG+TGG + chr5_3:13776371-13776390 Msa0800400:intron 25.0%
! AATCAAATAAAACCAGACAA+TGG - chr5_3:13776640-13776659 None:intergenic 25.0%
! GATTTGAAGATATTACTTAC+AGG + chr5_3:13776656-13776675 Msa0800400:intron 25.0%
! GTCCTACATTCATTAAAATT+GGG + chr5_3:13776756-13776775 Msa0800400:CDS 25.0%
!! TTTGTGAGTAGCATTATTTT+AGG - chr5_3:13776930-13776949 None:intergenic 25.0%
!! TAAATGATAATGAGGGTAAA+AGG - chr5_3:13777097-13777116 None:intergenic 25.0%
! TACCCTCATTATCATTTAAT+AGG + chr5_3:13777099-13777118 Msa0800400:intron 25.0%
! ATAAATTGACTAACTATGTC+TGG + chr5_3:13777299-13777318 Msa0800400:intron 25.0%
!! TAAAAAACATAGAGTATCAC+AGG - chr5_3:13777413-13777432 None:intergenic 25.0%
!!! AGAAATAATTAACGGACTAA+AGG - chr5_3:13777458-13777477 None:intergenic 25.0%
!! CAACATTTGTTAAGAAATCA+TGG + chr5_3:13777634-13777653 Msa0800400:intron 25.0%
! AAACAAACTTTCCAGTTATA+AGG + chr5_3:13777719-13777738 Msa0800400:intron 25.0%
! GATTACAAAAACCTTATAAC+TGG - chr5_3:13777733-13777752 None:intergenic 25.0%
!! TGACTTGATAATATTGACAA+AGG + chr5_3:13777872-13777891 Msa0800400:intron 25.0%
!! GACTTGATAATATTGACAAA+GGG + chr5_3:13777873-13777892 Msa0800400:intron 25.0%
! TCAACCACCAAATAATATTT+AGG + chr5_3:13778188-13778207 Msa0800400:intron 25.0%
! TCATAAGATAATCCCAAATA+GGG - chr5_3:13778227-13778246 None:intergenic 25.0%
! ATCATAAGATAATCCCAAAT+AGG - chr5_3:13778228-13778247 None:intergenic 25.0%
! TCAGCAACAAAATTCTAATA+TGG - chr5_3:13778569-13778588 None:intergenic 25.0%
!! TTAGAATTTTGTTGCTGATA+AGG + chr5_3:13778571-13778590 Msa0800400:intron 25.0%
!!! GATTTTGGTATTTCTGAATT+CGG + chr5_3:13778649-13778668 Msa0800400:intron 25.0%
! ACTTCTTATATTTGATGAGA+AGG + chr5_3:13778814-13778833 Msa0800400:intron 25.0%
!! TATGAAAGAAGTTTGATAAC+AGG + chr5_3:13779133-13779152 Msa0800400:intron 25.0%
! TTTTACTGAACTTCCGTTAA+CGG - chr5_3:13775701-13775720 None:intergenic 30.0%
AACGGAAGTTCAGTAAAATA+TGG + chr5_3:13775703-13775722 Msa0800400:CDS 30.0%
! TACCTTAACTTTTTGTTCCT+CGG - chr5_3:13775848-13775867 None:intergenic 30.0%
AACAAATCCCCAAATTTCTA+AGG - chr5_3:13776190-13776209 None:intergenic 30.0%
TGTTGTAACCTTCATCTTTA+AGG + chr5_3:13776206-13776225 Msa0800400:CDS 30.0%
AATCAGAAGTTCTCTTACAA+AGG + chr5_3:13776240-13776259 Msa0800400:CDS 30.0%
!! TATTACTTGTTTTCATCCGT+TGG + chr5_3:13776272-13776291 Msa0800400:intron 30.0%
GAAGAATCATACGTTGTTTA+TGG + chr5_3:13776301-13776320 Msa0800400:intron 30.0%
TAGATTTGTGGTTTATGCAT+AGG + chr5_3:13776383-13776402 Msa0800400:intron 30.0%
!! GTCTATTTCTATCTCTCATT+TGG - chr5_3:13776444-13776463 None:intergenic 30.0%
TGATAAGTAAGTGATGTGAT+AGG + chr5_3:13776482-13776501 Msa0800400:intron 30.0%
AGAGAGATAGAGAGAAAATA+AGG + chr5_3:13776506-13776525 Msa0800400:intron 30.0%
AATGAGTGTAGGAAAATCAA+AGG + chr5_3:13776534-13776553 Msa0800400:intron 30.0%
!! TTGAATTTTGAGGAATTGCT+AGG + chr5_3:13776611-13776630 Msa0800400:intron 30.0%
TTGAAGATATTACTTACAGG+AGG + chr5_3:13776659-13776678 Msa0800400:intron 30.0%
!!! CCTTAACTTCTTTTTTTCCT+CGG - chr5_3:13776690-13776709 None:intergenic 30.0%
AGGAAAAAAAGAAGTTAAGG+CGG + chr5_3:13776690-13776709 Msa0800400:CDS 30.0%
GGTCCTACATTCATTAAAAT+TGG + chr5_3:13776755-13776774 Msa0800400:CDS 30.0%
!! TGCCCAATTTTAATGAATGT+AGG - chr5_3:13776761-13776780 None:intergenic 30.0%
TGAGGAGTGAAATTTATCTA+TGG - chr5_3:13777191-13777210 None:intergenic 30.0%
TGTCAATATTATCAAGTCAC+CGG - chr5_3:13777871-13777890 None:intergenic 30.0%
TGCTCCTAAATATTATTTGG+TGG - chr5_3:13778195-13778214 None:intergenic 30.0%
GTTCTTCGAAAAACTTATGT+GGG - chr5_3:13778258-13778277 None:intergenic 30.0%
TGTTCTTCGAAAAACTTATG+TGG - chr5_3:13778259-13778278 None:intergenic 30.0%
CAACTTGTATACGATAAAAC+TGG + chr5_3:13778332-13778351 Msa0800400:intron 30.0%
GGTTAGTGTTATACCTTATA+AGG + chr5_3:13778969-13778988 Msa0800400:intron 30.0%
CCATGAGCATAAGATTTATA+TGG - chr5_3:13778999-13779018 None:intergenic 30.0%
CCATATAAATCTTATGCTCA+TGG + chr5_3:13778996-13779015 Msa0800400:intron 30.0%
TATAAATCTTATGCTCATGG+CGG + chr5_3:13778999-13779018 Msa0800400:intron 30.0%
! GCAAAAAACTTTTGTATGCA+AGG - chr5_3:13779077-13779096 None:intergenic 30.0%
CACTGGTATAGAATCTTAAA+GGG - chr5_3:13779172-13779191 None:intergenic 30.0%
TTGATGCTTTCTTTAATTCC+AGG + chr5_3:13779208-13779227 Msa0800400:intron 30.0%
AAAATTGATCCAAAGTCAGA+TGG + chr5_3:13779251-13779270 Msa0800400:CDS 30.0%
ATGTGACAGTGAAGAAGAAA+CGG - chr5_3:13775316-13775335 None:intergenic 35.0%
CTCTTGAAACTTCCAATTCA+TGG + chr5_3:13775417-13775436 Msa0800400:exon 35.0%
! TGATTTGTGGAGAAAGGAAA+TGG - chr5_3:13775477-13775496 None:intergenic 35.0%
AACCGAGGAACAAAAAGTTA+AGG + chr5_3:13775843-13775862 Msa0800400:CDS 35.0%
!!! ATTGTCCGATTTTTTTTGGC+AGG + chr5_3:13776104-13776123 Msa0800400:intron 35.0%
TCCAGAGAACCTTAGAAATT+TGG + chr5_3:13776178-13776197 Msa0800400:CDS 35.0%
CCAGAGAACCTTAGAAATTT+GGG + chr5_3:13776179-13776198 Msa0800400:CDS 35.0%
CAGAGAACCTTAGAAATTTG+GGG + chr5_3:13776180-13776199 Msa0800400:CDS 35.0%
!! TAACCTTCATCTTTAAGGCT+TGG + chr5_3:13776211-13776230 Msa0800400:CDS 35.0%
TTTGTGGTTTATGCATAGGA+AGG + chr5_3:13776387-13776406 Msa0800400:intron 35.0%
! TTTGGTGTAGAATGGGTAAT+AGG - chr5_3:13776426-13776445 None:intergenic 35.0%
!! TCTCTCATTTGGTGTAGAAT+GGG - chr5_3:13776433-13776452 None:intergenic 35.0%
!! ATCTCTCATTTGGTGTAGAA+TGG - chr5_3:13776434-13776453 None:intergenic 35.0%
!! ATAAGGTGTTGAATGAGTGT+AGG + chr5_3:13776523-13776542 Msa0800400:intron 35.0%
!! AATTTTGAGGAATTGCTAGG+AGG + chr5_3:13776614-13776633 Msa0800400:intron 35.0%
CCGAGGAAAAAAAGAAGTTA+AGG + chr5_3:13776687-13776706 Msa0800400:CDS 35.0%
!! AAGGAAAGCATCTTGAGATT+AGG + chr5_3:13776734-13776753 Msa0800400:CDS 35.0%
AACTGGTCAACATATTCTTG+AGG - chr5_3:13776812-13776831 None:intergenic 35.0%
TATCACCATAATAGCATGTG+CGG - chr5_3:13776864-13776883 None:intergenic 35.0%
! AATGGAAGTGGCACTATTTT+AGG + chr5_3:13776970-13776989 Msa0800400:intron 35.0%
GAGTAGCAGAAAAGAAAGAA+AGG - chr5_3:13777033-13777052 None:intergenic 35.0%
TGGTAGCATATACATATGCT+GGG - chr5_3:13777171-13777190 None:intergenic 35.0%
ATGGTAGCATATACATATGC+TGG - chr5_3:13777172-13777191 None:intergenic 35.0%
GAAAAGACTACTATTCAGTG+AGG - chr5_3:13777209-13777228 None:intergenic 35.0%
TCAATTTATGCCTGATCCAT+GGG - chr5_3:13777288-13777307 None:intergenic 35.0%
AGTATCACAGGATTGTAAAG+TGG - chr5_3:13777401-13777420 None:intergenic 35.0%
ACAATGTGTATCATTGTCCA+TGG + chr5_3:13777568-13777587 Msa0800400:intron 35.0%
GTTCAAGATAAATAGCACCA+TGG - chr5_3:13777588-13777607 None:intergenic 35.0%
! TCCATCTAGTTCACCTAATT+GGG + chr5_3:13777776-13777795 Msa0800400:intron 35.0%
!!! CCTAAGTTACCTCTTGTTTT+GGG + chr5_3:13777896-13777915 Msa0800400:intron 35.0%
TTGTGAACGAGGATATACTT+TGG - chr5_3:13778298-13778317 None:intergenic 35.0%
! TGAGACACAACACAACTTTT+GGG - chr5_3:13778397-13778416 None:intergenic 35.0%
! TTGAGACACAACACAACTTT+TGG - chr5_3:13778398-13778417 None:intergenic 35.0%
CATATAGTTTGATGGAGATG+TGG + chr5_3:13778449-13778468 Msa0800400:intron 35.0%
TAATAGGAGGAACAGATGAA+CGG + chr5_3:13778482-13778501 Msa0800400:intron 35.0%
!! TTTTGTTTATGAGGGAAGGA+TGG + chr5_3:13778512-13778531 Msa0800400:intron 35.0%
TTTGTTTATGAGGGAAGGAT+GGG + chr5_3:13778513-13778532 Msa0800400:intron 35.0%
! TGGTATTTCTGAATTCGGAA+TGG + chr5_3:13778654-13778673 Msa0800400:intron 35.0%
AAAGTTTGATCTGTAGCTTG+AGG + chr5_3:13778723-13778742 Msa0800400:intron 35.0%
CTTATATTTGATGAGAAGGC+TGG + chr5_3:13778818-13778837 Msa0800400:intron 35.0%
! AGGTTGTTGTTAAAGTGCAA+AGG + chr5_3:13778902-13778921 Msa0800400:CDS 35.0%
AAGGTATAACACTAACCCTA+AGG - chr5_3:13778966-13778985 None:intergenic 35.0%
! ATTTTTGTTCCTAGTCATGC+AGG - chr5_3:13779099-13779118 None:intergenic 35.0%
GGTATAGAATCTTAAAGGGA+TGG - chr5_3:13779168-13779187 None:intergenic 35.0%
! GCACTGGTATAGAATCTTAA+AGG - chr5_3:13779173-13779192 None:intergenic 35.0%
AGTATCAGCATTATATGCAC+TGG - chr5_3:13779189-13779208 None:intergenic 35.0%
GAAGATATTCAGCAATAACC+TGG - chr5_3:13779229-13779248 None:intergenic 35.0%
!! ATTGATTTTCATGGCGTGGA+AGG - chr5_3:13775347-13775366 None:intergenic 40.0%
!! AGAGATTGATTTTCATGGCG+TGG - chr5_3:13775351-13775370 None:intergenic 40.0%
AAGAGGTAGTAGCCATGAAT+TGG - chr5_3:13775432-13775451 None:intergenic 40.0%
TGGAGAAAGGAAATGGAGTT+CGG - chr5_3:13775470-13775489 None:intergenic 40.0%
TGGAGAAAGATAAACGGTTG+CGG - chr5_3:13775504-13775523 None:intergenic 40.0%
AGCGTGTGGAGAAAGATAAA+CGG - chr5_3:13775510-13775529 None:intergenic 40.0%
!! CGGATTCATCTTTTGAAGAG+CGG - chr5_3:13775582-13775601 None:intergenic 40.0%
!! TGAAGCTTCTAAGGTGAATG+AGG + chr5_3:13775765-13775784 Msa0800400:CDS 40.0%
GGCTACCTGCCAAAAAAAAT+CGG - chr5_3:13776112-13776131 None:intergenic 40.0%
!! CCCAAATTTCTAAGGTTCTC+TGG - chr5_3:13776182-13776201 None:intergenic 40.0%
CAACCAAGCCTTAAAGATGA+AGG - chr5_3:13776217-13776236 None:intergenic 40.0%
!! CTTCATCTTTAAGGCTTGGT+TGG + chr5_3:13776215-13776234 Msa0800400:CDS 40.0%
TATGCATACGCATCTACAGT+AGG + chr5_3:13776561-13776580 Msa0800400:intron 40.0%
TTACCTGAAGTTCAGACAAC+TGG - chr5_3:13776829-13776848 None:intergenic 40.0%
TAGCATATACATATGCTGGG+TGG - chr5_3:13777168-13777187 None:intergenic 40.0%
! CTGAATAGTAGTCTTTTCCC+CGG + chr5_3:13777211-13777230 Msa0800400:intron 40.0%
GTCAATTTATGCCTGATCCA+TGG - chr5_3:13777289-13777308 None:intergenic 40.0%
! TATGAAGCCTTATCCACCTT+TGG + chr5_3:13777365-13777384 Msa0800400:intron 40.0%
! ATGAAGCCTTATCCACCTTT+GGG + chr5_3:13777366-13777385 Msa0800400:intron 40.0%
TCTTCTCAATCACTGCACAA+AGG + chr5_3:13777475-13777494 Msa0800400:intron 40.0%
! CTCCATCTAGTTCACCTAAT+TGG + chr5_3:13777775-13777794 Msa0800400:intron 40.0%
! ATATCACTTGCTGCCCAATT+AGG - chr5_3:13777792-13777811 None:intergenic 40.0%
!!! TATCAAGTCACCGGTTTTTC+TGG - chr5_3:13777862-13777881 None:intergenic 40.0%
!! GCCTAAGTTACCTCTTGTTT+TGG + chr5_3:13777895-13777914 Msa0800400:intron 40.0%
CCCAAAACAAGAGGTAACTT+AGG - chr5_3:13777899-13777918 None:intergenic 40.0%
!!! TTACCTCTTGTTTTGGGTTC+AGG + chr5_3:13777902-13777921 Msa0800400:intron 40.0%
! ATAGCTAAAGCACTCTCAGA+GGG - chr5_3:13777945-13777964 None:intergenic 40.0%
! AATAGCTAAAGCACTCTCAG+AGG - chr5_3:13777946-13777965 None:intergenic 40.0%
GCTATTGTTGAAGAAGAGCT+TGG + chr5_3:13777960-13777979 Msa0800400:CDS 40.0%
AGCATTTGGAAGACCCTATT+TGG + chr5_3:13778211-13778230 Msa0800400:intron 40.0%
GCATTTGGAAGACCCTATTT+GGG + chr5_3:13778212-13778231 Msa0800400:intron 40.0%
CTACAATCGAATTGTGAACG+AGG - chr5_3:13778309-13778328 None:intergenic 40.0%
! AGACACAACACAACTTTTGG+GGG - chr5_3:13778395-13778414 None:intergenic 40.0%
! GAGACACAACACAACTTTTG+GGG - chr5_3:13778396-13778415 None:intergenic 40.0%
AATAGGAGGAACAGATGAAC+GGG + chr5_3:13778483-13778502 Msa0800400:intron 40.0%
!! GGTGCGGTTTTTGTTTATGA+GGG + chr5_3:13778504-13778523 Msa0800400:intron 40.0%
!! CGGTTTTTGTTTATGAGGGA+AGG + chr5_3:13778508-13778527 Msa0800400:intron 40.0%
TTGTTTATGAGGGAAGGATG+GGG + chr5_3:13778514-13778533 Msa0800400:intron 40.0%
TTTGTTGCTGATAAGGTGTG+AGG + chr5_3:13778578-13778597 Msa0800400:intron 40.0%
!! AAACTTTTTCCCCCTATTGC+AGG + chr5_3:13778847-13778866 Msa0800400:intron 40.0%
TCAAAAAGATCCTTGAGACC+AGG - chr5_3:13778928-13778947 None:intergenic 40.0%
!!! AGTTTTTTGCCTGCATGACT+AGG + chr5_3:13779087-13779106 Msa0800400:intron 40.0%
AAAGTCAGATGGTGCAAAGA+GGG + chr5_3:13779262-13779281 Msa0800400:CDS 40.0%
ATGTGCCTCTGTCTTATATC+AGG + chr5_3:13779307-13779326 Msa0800400:CDS 40.0%
CATCACCTGATATAAGACAG+AGG - chr5_3:13779315-13779334 None:intergenic 40.0%
ACAGTGAAGAAGAAACGGAG+TGG - chr5_3:13775311-13775330 None:intergenic 45.0%
AGAGAGAGAGAGAGAGCTTA+TGG - chr5_3:13775395-13775414 None:intergenic 45.0%
AAAGGAAATGGAGTTCGGGT+AGG - chr5_3:13775465-13775484 None:intergenic 45.0%
GGAGAAAGGAAATGGAGTTC+GGG - chr5_3:13775469-13775488 None:intergenic 45.0%
! GGAGAGTGATTTGTGGAGAA+AGG - chr5_3:13775483-13775502 None:intergenic 45.0%
TGACATTGGAGGTGGAAAAG+CGG - chr5_3:13775540-13775559 None:intergenic 45.0%
!! TTTTGAAGAGCGGATTCGTG+TGG - chr5_3:13775572-13775591 None:intergenic 45.0%
GTTAACTCGTTCTGCTATCG+CGG - chr5_3:13775602-13775621 None:intergenic 45.0%
AACGAGTTAACGACGTGGAA+TGG + chr5_3:13775611-13775630 Msa0800400:CDS 45.0%
GCAGCAGGAGGTTATGTTAA+CGG + chr5_3:13775673-13775692 Msa0800400:CDS 45.0%
TATGTTAACGGCGCCGTTAA+CGG + chr5_3:13775685-13775704 Msa0800400:CDS 45.0%
GGTGGATGTTGAAGCTTCTA+AGG + chr5_3:13775756-13775775 Msa0800400:CDS 45.0%
!! GCTTCTAAGGTGAATGAGGA+TGG + chr5_3:13775769-13775788 Msa0800400:CDS 45.0%
CTAAGGTGAATGAGGATGGA+AGG + chr5_3:13775773-13775792 Msa0800400:CDS 45.0%
ATGAGGATGGAAGGAAGAGA+AGG + chr5_3:13775782-13775801 Msa0800400:CDS 45.0%
AAGAGAAGGTTGGAGGAGAT+TGG + chr5_3:13775796-13775815 Msa0800400:CDS 45.0%
AGATTGGAAAAGAAGACGCG+TGG + chr5_3:13775812-13775831 Msa0800400:CDS 45.0%
TTCCTTAAGCCACTTGGCAA+GGG - chr5_3:13776720-13776739 None:intergenic 45.0%
TTTCCTTAAGCCACTTGGCA+AGG - chr5_3:13776721-13776740 None:intergenic 45.0%
GATGCTTTCCTTAAGCCACT+TGG - chr5_3:13776726-13776745 None:intergenic 45.0%
AGGAAGAATGTCCACTCTAG+TGG - chr5_3:13776792-13776811 None:intergenic 45.0%
TGACCAGTTGTCTGAACTTC+AGG + chr5_3:13776823-13776842 Msa0800400:CDS 45.0%
ACCATAATAGCATGTGCGGA+GGG - chr5_3:13776860-13776879 None:intergenic 45.0%
TTCCATTCACCAGCTTGAGA+GGG - chr5_3:13776957-13776976 None:intergenic 45.0%
TCAGTATTTGAAGGCCAGTC+CGG - chr5_3:13777233-13777252 None:intergenic 45.0%
CTTTGTAAGTGTCTCTCCCA+TGG + chr5_3:13777269-13777288 Msa0800400:intron 45.0%
TTGACTAACTATGTCTGGCC+TGG + chr5_3:13777304-13777323 Msa0800400:intron 45.0%
CACAGGATTGTAAAGTGGTG+AGG - chr5_3:13777396-13777415 None:intergenic 45.0%
GCTTCACTGGAAGCAACTAT+GGG - chr5_3:13777523-13777542 None:intergenic 45.0%
AGCTTCACTGGAAGCAACTA+TGG - chr5_3:13777524-13777543 None:intergenic 45.0%
GCCCAATTAGGTGAACTAGA+TGG - chr5_3:13777780-13777799 None:intergenic 45.0%
! GGTTTTTCTGGATTCGAAGG+GGG - chr5_3:13777850-13777869 None:intergenic 45.0%
! CGGTTTTTCTGGATTCGAAG+GGG - chr5_3:13777851-13777870 None:intergenic 45.0%
! CCGGTTTTTCTGGATTCGAA+GGG - chr5_3:13777852-13777871 None:intergenic 45.0%
CCCTTCGAATCCAGAAAAAC+CGG + chr5_3:13777849-13777868 Msa0800400:intron 45.0%
!! ACCGGTTTTTCTGGATTCGA+AGG - chr5_3:13777853-13777872 None:intergenic 45.0%
GATCCTGAACCCAAAACAAG+AGG - chr5_3:13777908-13777927 None:intergenic 45.0%
! AAAGCACTCTCAGAGGGAAA+TGG - chr5_3:13777939-13777958 None:intergenic 45.0%
! GACACAACACAACTTTTGGG+GGG - chr5_3:13778394-13778413 None:intergenic 45.0%
! ATGTGGTGCCAAACGGTAAT+AGG + chr5_3:13778466-13778485 Msa0800400:intron 45.0%
CTGTTCCTCCTATTACCGTT+TGG - chr5_3:13778477-13778496 None:intergenic 45.0%
!! GGGTGCGGTTTTTGTTTATG+AGG + chr5_3:13778503-13778522 Msa0800400:intron 45.0%
ATGAACCTGACCTGCAATAG+GGG - chr5_3:13778860-13778879 None:intergenic 45.0%
GATGAACCTGACCTGCAATA+GGG - chr5_3:13778861-13778880 None:intergenic 45.0%
GTTCATCGCGCAAGATTGAA+GGG + chr5_3:13778874-13778893 Msa0800400:CDS 45.0%
GTTGTTAAAGTGCAAAGGCC+TGG + chr5_3:13778907-13778926 Msa0800400:CDS 45.0%
CTCTTTGCACCATCTGACTT+TGG - chr5_3:13779263-13779282 None:intergenic 45.0%
CAAAGTCAGATGGTGCAAAG+AGG + chr5_3:13779261-13779280 Msa0800400:CDS 45.0%
AGATGGTGCAAAGAGGGATT+GGG + chr5_3:13779268-13779287 Msa0800400:CDS 45.0%
GAGAGAGAGAGAGCTTATGG+AGG - chr5_3:13775392-13775411 None:intergenic 50.0%
GGGTAGGTGAAGAAGAGAAG+AGG - chr5_3:13775449-13775468 None:intergenic 50.0%
GACATTGGAGGTGGAAAAGC+GGG - chr5_3:13775539-13775558 None:intergenic 50.0%
AGCAGAACGAGTTAACGACG+TGG + chr5_3:13775606-13775625 Msa0800400:CDS 50.0%
GTTAACGACGTGGAATGGAG+CGG + chr5_3:13775616-13775635 Msa0800400:CDS 50.0%
TGGAAACGGTGTAGCTTCTG+CGG + chr5_3:13775729-13775748 Msa0800400:CDS 50.0%
GGATGGAAGGAAGAGAAGGT+TGG + chr5_3:13775786-13775805 Msa0800400:CDS 50.0%
TGGAAGGAAGAGAAGGTTGG+AGG + chr5_3:13775789-13775808 Msa0800400:CDS 50.0%
CGCGTGGTTTAAACAAACCG+AGG + chr5_3:13775828-13775847 Msa0800400:CDS 50.0%
AATCTACTCCAACGACCTCC+AGG - chr5_3:13776141-13776160 None:intergenic 50.0%
ATTGCTAGGAGGCCATTGTC+TGG + chr5_3:13776625-13776644 Msa0800400:intron 50.0%
ACTTACAGGAGGAATGACCG+AGG + chr5_3:13776670-13776689 Msa0800400:intron 50.0%
TCCCTCCGCACATGCTATTA+TGG + chr5_3:13776856-13776875 Msa0800400:intron 50.0%
CACCATAATAGCATGTGCGG+AGG - chr5_3:13776861-13776880 None:intergenic 50.0%
ACAAACAGTCCCTCTCAAGC+TGG + chr5_3:13776945-13776964 Msa0800400:intron 50.0%
CTTCCATTCACCAGCTTGAG+AGG - chr5_3:13776958-13776977 None:intergenic 50.0%
CTCAAGCTGGTGAATGGAAG+TGG + chr5_3:13776958-13776977 Msa0800400:intron 50.0%
! TAGTAGTCTTTTCCCCGGAC+TGG + chr5_3:13777216-13777235 Msa0800400:intron 50.0%
AGTATTTGAAGGCCAGTCCG+GGG - chr5_3:13777231-13777250 None:intergenic 50.0%
CAGTATTTGAAGGCCAGTCC+GGG - chr5_3:13777232-13777251 None:intergenic 50.0%
AAGTGTCTCTCCCATGGATC+AGG + chr5_3:13777275-13777294 Msa0800400:intron 50.0%
TCTGCTACCTATCTCACACC+AGG - chr5_3:13777325-13777344 None:intergenic 50.0%
GGAGAACCCAAAGGTGGATA+AGG - chr5_3:13777375-13777394 None:intergenic 50.0%
AAGTGGTGAGGAGAACCCAA+AGG - chr5_3:13777384-13777403 None:intergenic 50.0%
ACTGGAAGCAACTATGGGAG+AGG - chr5_3:13777518-13777537 None:intergenic 50.0%
TAAGTTGCGTGCAGCTTCAC+TGG - chr5_3:13777536-13777555 None:intergenic 50.0%
GAAGAGCTTGGAGCTTCTGT+AGG + chr5_3:13777972-13777991 Msa0800400:CDS 50.0%
CCAAGACTTGCAGCAGCTAT+TGG - chr5_3:13778026-13778045 None:intergenic 50.0%
CCAATAGCTGCTGCAAGTCT+TGG + chr5_3:13778023-13778042 Msa0800400:CDS 50.0%
! GATGGAGATGTGGTGCCAAA+CGG + chr5_3:13778459-13778478 Msa0800400:intron 50.0%
! TGGTGCCAAACGGTAATAGG+AGG + chr5_3:13778469-13778488 Msa0800400:intron 50.0%
! TTTTCCCCCTATTGCAGGTC+AGG + chr5_3:13778852-13778871 Msa0800400:intron 50.0%
TGAACCTGACCTGCAATAGG+GGG - chr5_3:13778859-13778878 None:intergenic 50.0%
CGATGAACCTGACCTGCAAT+AGG - chr5_3:13778862-13778881 None:intergenic 50.0%
GGTTCATCGCGCAAGATTGA+AGG + chr5_3:13778873-13778892 Msa0800400:CDS 50.0%
CAGATGGTGCAAAGAGGGAT+TGG + chr5_3:13779267-13779286 Msa0800400:CDS 50.0%
CGGTTGCGGAGAGTGATTTG+TGG - chr5_3:13775490-13775509 None:intergenic 55.0%
AAAGCGGGAAATGGAGCGTG+TGG - chr5_3:13775524-13775543 None:intergenic 55.0%
GGAGGTGGAAAAGCGGGAAA+TGG - chr5_3:13775533-13775552 None:intergenic 55.0%
GCGAAGAGTGACATTGGAGG+TGG - chr5_3:13775548-13775567 None:intergenic 55.0%
TGTGGCGCGAAGAGTGACAT+TGG - chr5_3:13775554-13775573 None:intergenic 55.0%
GACGTGGAATGGAGCGGAAA+CGG + chr5_3:13775622-13775641 Msa0800400:CDS 55.0%
TCCTGCTGCTCCATTACTGC+CGG - chr5_3:13775662-13775681 None:intergenic 55.0%
AAACGGTGTAGCTTCTGCGG+TGG + chr5_3:13775732-13775751 Msa0800400:CDS 55.0%
GACCCTTGCCAAGTGGCTTA+AGG + chr5_3:13776715-13776734 Msa0800400:CDS 55.0%
GCAGCAGTTCTCCACTAGAG+TGG + chr5_3:13776778-13776797 Msa0800400:CDS 55.0%
GTCCCTCTCAAGCTGGTGAA+TGG + chr5_3:13776952-13776971 Msa0800400:intron 55.0%
TGTCTGGCCTGGTGTGAGAT+AGG + chr5_3:13777315-13777334 Msa0800400:intron 55.0%
TGGTGAGGAGAACCCAAAGG+TGG - chr5_3:13777381-13777400 None:intergenic 55.0%
GCACTCTCAGAGGGAAATGG+AGG - chr5_3:13777936-13777955 None:intergenic 55.0%
!! TTGGGGGGCGTTTGGATACA+CGG - chr5_3:13778379-13778398 None:intergenic 55.0%
!!! CACAACTTTTGGGGGGCGTT+TGG - chr5_3:13778387-13778406 None:intergenic 55.0%
GAGGAACAGATGAACGGGTG+CGG + chr5_3:13778488-13778507 Msa0800400:intron 55.0%
TCGCGCAAGATTGAAGGGAC+AGG + chr5_3:13778879-13778898 Msa0800400:CDS 55.0%
CGCAAGATTGAAGGGACAGG+AGG + chr5_3:13778882-13778901 Msa0800400:CDS 55.0%
AGTGCAAAGGCCTGGTCTCA+AGG + chr5_3:13778915-13778934 Msa0800400:CDS 55.0%
GGCGCGAAGAGTGACATTGG+AGG - chr5_3:13775551-13775570 None:intergenic 60.0%
TGCTCCATTACTGCCGGCAC+GGG - chr5_3:13775656-13775675 None:intergenic 60.0%
CTGCTCCATTACTGCCGGCA+CGG - chr5_3:13775657-13775676 None:intergenic 60.0%
! GGCAGTAATGGAGCAGCAGG+AGG + chr5_3:13775661-13775680 Msa0800400:CDS 60.0%
! TGTAGCTTCTGCGGTGGTGG+TGG + chr5_3:13775738-13775757 Msa0800400:CDS 60.0%
CCAACGACCTCCAGGAGCAA+CGG - chr5_3:13776133-13776152 None:intergenic 60.0%
GAGGGAAGGATGGGGAAGTC+TGG + chr5_3:13778522-13778541 Msa0800400:intron 60.0%
AACGGAGTTGCCTCCCGTGC+CGG + chr5_3:13775640-13775659 Msa0800400:CDS 65.0%
TCCATTACTGCCGGCACGGG+AGG - chr5_3:13775653-13775672 None:intergenic 65.0%
! GCCGGCAGTAATGGAGCAGC+AGG + chr5_3:13775658-13775677 Msa0800400:CDS 65.0%
CGGTGTAGCTTCTGCGGTGG+TGG + chr5_3:13775735-13775754 Msa0800400:CDS 65.0%
TGGCAGGTAGCCGTTGCTCC+TGG + chr5_3:13776120-13776139 Msa0800400:intron 65.0%
CAGGTAGCCGTTGCTCCTGG+AGG + chr5_3:13776123-13776142 Msa0800400:intron 65.0%
CCGTTGCTCCTGGAGGTCGT+TGG + chr5_3:13776130-13776149 Msa0800400:CDS 65.0%
GGCGGAAGACCCTTGCCAAG+TGG + chr5_3:13776708-13776727 Msa0800400:CDS 65.0%
! GCCTCCCGTGCCGGCAGTAA+TGG + chr5_3:13775649-13775668 Msa0800400:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13775301 13779346 13775301 ID=Msa0800400;Name=Msa0800400
chr5_3 mRNA 13775301 13779346 13775301 ID=Msa0800400-mRNA-1;Parent=Msa0800400;Name=Msa0800400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=135|1|0.83|1|1|1|6|0|356
chr5_3 exon 13775301 13775864 13775301 ID=Msa0800400-mRNA-1:exon:5710;Parent=Msa0800400-mRNA-1
chr5_3 exon 13776126 13776261 13776126 ID=Msa0800400-mRNA-1:exon:5711;Parent=Msa0800400-mRNA-1
chr5_3 exon 13776678 13776844 13776678 ID=Msa0800400-mRNA-1:exon:5712;Parent=Msa0800400-mRNA-1
chr5_3 exon 13777924 13778044 13777924 ID=Msa0800400-mRNA-1:exon:5713;Parent=Msa0800400-mRNA-1
chr5_3 exon 13778869 13778969 13778869 ID=Msa0800400-mRNA-1:exon:5714;Parent=Msa0800400-mRNA-1
chr5_3 exon 13779230 13779346 13779230 ID=Msa0800400-mRNA-1:exon:5715;Parent=Msa0800400-mRNA-1
chr5_3 five_prime_UTR 13775301 13775435 13775301 ID=Msa0800400-mRNA-1:five_prime_utr;Parent=Msa0800400-mRNA-1
chr5_3 CDS 13775436 13775864 13775436 ID=Msa0800400-mRNA-1:cds;Parent=Msa0800400-mRNA-1
chr5_3 CDS 13776126 13776261 13776126 ID=Msa0800400-mRNA-1:cds;Parent=Msa0800400-mRNA-1
chr5_3 CDS 13776678 13776844 13776678 ID=Msa0800400-mRNA-1:cds;Parent=Msa0800400-mRNA-1
chr5_3 CDS 13777924 13778044 13777924 ID=Msa0800400-mRNA-1:cds;Parent=Msa0800400-mRNA-1
chr5_3 CDS 13778869 13778969 13778869 ID=Msa0800400-mRNA-1:cds;Parent=Msa0800400-mRNA-1
chr5_3 CDS 13779230 13779346 13779230 ID=Msa0800400-mRNA-1:cds;Parent=Msa0800400-mRNA-1
Gene Sequence

>Msa0800400

ATGGCTACTACCTCTTCTCTTCTTCACCTACCCGAACTCCATTTCCTTTCTCCACAAATCACTCTCCGCAACCGTTTATCTTTCTCCACACGCTCCATTTCCCGCTTTTCCACCTCCAATGTCACTCTTCGCGCCACACGAATCCGCTCTTCAAAAGATGAATCCGCGATAGCAGAACGAGTTAACGACGTGGAATGGAGCGGAAACGGAGTTGCCTCCCGTGCCGGCAGTAATGGAGCAGCAGGAGGTTATGTTAACGGCGCCGTTAACGGAAGTTCAGTAAAATATGGAAATGGAAACGGTGTAGCTTCTGCGGTGGTGGTGGATGTTGAAGCTTCTAAGGTGAATGAGGATGGAAGGAAGAGAAGGTTGGAGGAGATTGGAAAAGAAGACGCGTGGTTTAAACAAACCGAGGAACAAAAAGTTAAGGTAGCCGTTGCTCCTGGAGGTCGTTGGAGTAGATTCAAGACTTACTCTACAATCCAGAGAACCTTAGAAATTTGGGGATTTGTTGTAACCTTCATCTTTAAGGCTTGGTTGGACAATCAGAAGTTCTCTTACAAAGGAGGAATGACCGAGGAAAAAAAGAAGTTAAGGCGGAAGACCCTTGCCAAGTGGCTTAAGGAAAGCATCTTGAGATTAGGTCCTACATTCATTAAAATTGGGCAGCAGTTCTCCACTAGAGTGGACATTCTTCCTCAAGAATATGTTGACCAGTTGTCTGAACTTCAGGATCAAGTTCCTCCATTTCCCTCTGAGAGTGCTTTAGCTATTGTTGAAGAAGAGCTTGGAGCTTCTGTAGGTGATATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGCGCAAGATTGAAGGGACAGGAGGTTGTTGTTAAAGTGCAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTAAAAAACCTTAGGGTTATTGCTGAATATCTTCAAAAAATTGATCCAAAGTCAGATGGTGCAAAGAGGGATTGGGTTGCTATTTATGATGAATGTGCCTCTGTCTTATATCAGGTGATGATATCATGTTAA

Protein sequence

>Msa0800400

MATTSSLLHLPELHFLSPQITLRNRLSFSTRSISRFSTSNVTLRATRIRSSKDESAIAERVNDVEWSGNGVASRAGSNGAAGGYVNGAVNGSSVKYGNGNGVASAVVVDVEASKVNEDGRKRRLEEIGKEDAWFKQTEEQKVKVAVAPGGRWSRFKTYSTIQRTLEIWGFVVTFIFKAWLDNQKFSYKGGMTEEKKKLRRKTLAKWLKESILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSESALAIVEEELGASVGDIFDQFDYEPIAAASLGQVHRARLKGQEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQVMISC*