AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371260 MtrunA17_Chr8g0386001 97.163 282 4 1 1 282 1 278 0.0 557
Msa1371260 MtrunA17_Chr3g0131951 57.343 286 102 2 10 275 72 357 3.17e-117 341
Msa1371260 MtrunA17_Chr7g0214191 47.794 272 126 3 1 267 1 261 1.07e-77 237
Msa1371260 MtrunA17_Chr5g0428281 45.055 273 139 4 3 273 4 267 2.35e-74 228
Msa1371260 MtrunA17_Chr7g0214181 49.576 236 118 1 1 236 1 235 9.23e-74 226
Msa1371260 MtrunA17_Chr8g0386011 47.479 238 120 4 4 240 5 238 2.55e-69 215
Msa1371260 MtrunA17_Chr3g0131961 46.637 223 116 3 10 231 11 231 5.27e-67 209
Msa1371260 MtrunA17_Chr7g0215601 47.934 242 121 4 4 241 5 245 1.01e-66 208
Msa1371260 MtrunA17_Chr5g0444031 40.891 247 140 3 4 246 25 269 1.10e-60 193
Msa1371260 MtrunA17_Chr2g0278491 42.920 226 121 6 56 277 1 222 1.43e-50 166
Msa1371260 MtrunA17_Chr2g0295681 38.462 208 127 1 10 217 6 212 1.44e-46 156
Msa1371260 MtrunA17_Chr3g0125861 34.498 229 144 3 6 231 2 227 5.28e-42 144
Msa1371260 MtrunA17_Chr6g0450941 37.156 218 131 4 11 223 83 299 1.10e-41 145
Msa1371260 MtrunA17_Chr8g0388621 33.043 230 151 2 11 238 12 240 1.72e-41 143
Msa1371260 MtrunA17_Chr1g0159431 35.931 231 140 4 6 233 2 227 4.09e-41 142
Msa1371260 MtrunA17_Chr3g0119951 31.939 263 164 6 12 269 11 263 4.68e-41 142
Msa1371260 MtrunA17_Chr3g0126421 32.558 258 160 4 5 258 2 249 1.67e-40 140
Msa1371260 MtrunA17_Chr3g0119991 31.474 251 157 6 24 269 2 242 4.30e-38 134
Msa1371260 MtrunA17_Chr1g0158931 34.667 225 138 3 10 226 7 230 2.11e-37 133
Msa1371260 MtrunA17_Chr3g0126411 32.558 258 160 4 5 258 2 249 2.32e-37 132
Msa1371260 MtrunA17_Chr4g0059191 34.123 211 132 3 25 231 1 208 5.93e-35 125
Msa1371260 MtrunA17_Chr8g0359261 33.180 217 136 4 13 225 18 229 2.60e-32 119
Msa1371260 MtrunA17_Chr6g0450931 33.831 201 121 5 31 223 7 203 3.88e-32 118
Msa1371260 MtrunA17_Chr2g0314571 31.963 219 137 5 13 225 18 230 2.76e-29 111
Msa1371260 MtrunA17_Chr6g0450951 34.896 192 117 5 31 217 7 195 4.53e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371260 AT5G50800.1 48.475 295 136 7 1 281 1 293 2.48e-87 263
Msa1371260 AT5G23660.1 53.138 239 103 2 1 231 3 240 2.38e-85 257
Msa1371260 AT3G48740.1 46.127 284 140 6 1 275 3 282 5.71e-80 243
Msa1371260 AT4G25010.1 45.993 287 138 5 1 281 1 276 8.24e-80 243
Msa1371260 AT5G13170.1 44.615 260 135 4 10 267 12 264 1.08e-76 235
Msa1371260 AT5G50790.1 41.026 273 145 6 11 269 11 281 6.68e-69 215
Msa1371260 AT2G39060.1 44.578 249 131 3 10 254 10 255 7.30e-65 204
Msa1371260 AT4G15920.1 35.021 237 152 2 8 243 4 239 1.56e-51 169
Msa1371260 AT3G16690.1 32.710 214 144 0 10 223 6 219 2.48e-44 150
Msa1371260 AT3G16690.3 32.710 214 144 0 10 223 41 254 3.94e-44 151
Msa1371260 AT1G21460.1 36.752 234 136 4 6 230 2 232 1.93e-42 146
Msa1371260 AT5G62850.1 33.778 225 146 2 6 228 5 228 2.78e-39 137
Msa1371260 AT5G53190.1 30.620 258 171 3 12 265 9 262 1.91e-38 136
Msa1371260 AT4G10850.1 33.654 208 136 1 11 216 12 219 2.04e-38 136
Msa1371260 AT5G40260.1 34.579 214 134 4 10 218 9 221 2.36e-35 127
Msa1371260 AT3G28007.1 36.321 212 128 4 11 218 10 218 3.02e-35 127
Msa1371260 AT1G66770.1 31.963 219 146 2 1 216 1 219 6.54e-35 127
Msa1371260 AT3G14770.1 32.569 218 141 3 11 225 16 230 1.42e-31 117
Msa1371260 AT5G62850.2 33.862 189 122 2 6 192 5 192 4.05e-31 115
Msa1371260 AT5G40260.2 35.519 183 113 3 10 188 9 190 4.58e-30 112
Msa1371260 AT1G21460.2 35.417 192 118 3 6 194 2 190 2.03e-29 110
Msa1371260 AT3G16690.2 29.167 144 102 0 10 153 6 149 7.21e-21 88.2

Find 59 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGATTGGGTTGTTTAATT+TGG 0.148249 tig0019188:-161734 Msa1371260:CDS
ATTATATACCCTTGCTTTCT+TGG 0.156048 tig0019188:+162001 None:intergenic
ACACTCACCATAACGCTTAA+AGG 0.232707 tig0019188:+161598 None:intergenic
GCATTGAAAATCGTAAAATA+TGG 0.241493 tig0019188:-160358 Msa1371260:three_prime_UTR
CTGATTGGGTTGTTTAATTT+GGG 0.255905 tig0019188:-161733 Msa1371260:CDS
ACTAACTAGGCTATAATATA+TGG 0.279648 tig0019188:+160303 None:intergenic
TTGATATCATCTTTGTGTTC+TGG 0.282619 tig0019188:+160624 None:intergenic
TGCAGCACCTTTAAGCGTTA+TGG 0.323289 tig0019188:-161605 Msa1371260:intron
AACTTTGTGGGTATCACATT+TGG 0.323979 tig0019188:-160711 Msa1371260:CDS
TCACAACAAGTGCAATTATA+TGG 0.328007 tig0019188:-161323 Msa1371260:CDS
AGGCATAAACTCTACACTTT+TGG 0.335245 tig0019188:+161365 None:intergenic
ACAGAACGTATCGAACTTCT+TGG 0.348472 tig0019188:-161661 Msa1371260:CDS
CACACAACCAAATGCATTGA+TGG 0.355614 tig0019188:+162064 None:intergenic
ATCTTCACATTGAAGCTGAT+TGG 0.360466 tig0019188:-161748 Msa1371260:CDS
ATCATCACCATCAATGCATT+TGG 0.361524 tig0019188:-162071 Msa1371260:CDS
GAAGCAAGAAGAGAAGAAAC+AGG 0.365263 tig0019188:-160523 Msa1371260:CDS
CACTCTTCAGTGCAATGCTT+TGG 0.375576 tig0019188:-162130 Msa1371260:CDS
TCTTCACATTGAAGCTGATT+GGG 0.409416 tig0019188:-161747 Msa1371260:CDS
CCTCAAAGATATATTTGTTA+CGG 0.420795 tig0019188:-161283 Msa1371260:intron
GGGACAGCTTCCGAACTTTG+TGG 0.432798 tig0019188:-160724 Msa1371260:intron
CTGAAGAGTGCAGCCACATA+TGG 0.434896 tig0019188:+162143 None:intergenic
TGAGAAGTTTGATAAATTGA+AGG 0.436768 tig0019188:-160450 Msa1371260:three_prime_UTR
TGTACTTGATTTCCTTCACT+TGG 0.445244 tig0019188:+160489 None:intergenic
CATTGAAAATCGTAAAATAT+GGG 0.454953 tig0019188:-160357 Msa1371260:three_prime_UTR
TCCTATATTCAACATACAAA+AGG 0.460017 tig0019188:-162881 Msa1371260:five_prime_UTR
CCGTAACAAATATATCTTTG+AGG 0.464322 tig0019188:+161283 None:intergenic
AGGAGGAGTGAAAGAGTGAA+AGG 0.471347 tig0019188:+161345 None:intergenic
TAATTTGGGAGGAATTTGTT+TGG 0.478020 tig0019188:-161719 Msa1371260:CDS
AATGTGATACCCACAAAGTT+CGG 0.481534 tig0019188:+160714 None:intergenic
AAATCAAGTACAACAACAAA+AGG 0.486924 tig0019188:-160478 Msa1371260:CDS
GGACAGCTTCCGAACTTTGT+GGG 0.489427 tig0019188:-160723 Msa1371260:intron
TTCATACATGCATTTGTGCA+AGG 0.496378 tig0019188:+160154 None:intergenic
GTTTGTAAGAAGAAAACAAC+AGG 0.503909 tig0019188:-162182 Msa1371260:CDS
TCATACATGCATTTGTGCAA+GGG 0.513101 tig0019188:+160155 None:intergenic
GAGAAGTTTGATAAATTGAA+GGG 0.516591 tig0019188:-160449 Msa1371260:three_prime_UTR
CAGCCACATATGGAGCAGAT+TGG 0.522606 tig0019188:+162153 None:intergenic
GGAGCAGTAAGTGATATAGA+TGG 0.535555 tig0019188:+162022 None:intergenic
TCAAACATATTCTGATACCA+TGG 0.537188 tig0019188:-162850 Msa1371260:exon
TTTCCAATCTGCTCCATATG+TGG 0.537778 tig0019188:-162156 Msa1371260:CDS
ATTGGGTTGTTTAATTTGGG+AGG 0.542194 tig0019188:-161730 Msa1371260:CDS
TATAGGAGAGAAGACAAGGA+AGG 0.550189 tig0019188:+162897 None:intergenic
TGAATATAGGAGAGAAGACA+AGG 0.551688 tig0019188:+162893 None:intergenic
GGCTATAAAGCAAAAGAAAG+AGG 0.564263 tig0019188:+162366 None:intergenic
AACGTATCGAACTTCTTGGA+TGG 0.564898 tig0019188:-161657 Msa1371260:CDS
CTTACTGCTCCAAGAAAGCA+AGG 0.566936 tig0019188:-162010 Msa1371260:CDS
GAAGAAACAAAACCAAGTGA+AGG 0.574594 tig0019188:-160501 Msa1371260:CDS
CACATTTGGAACAATTCAGA+TGG 0.576532 tig0019188:-160697 Msa1371260:CDS
TAATTGCACTTGTTGTGAGG+AGG 0.606445 tig0019188:+161328 None:intergenic
AATGCACTAAACAACACACA+TGG 0.606702 tig0019188:+160376 None:intergenic
ATATAATTGCACTTGTTGTG+AGG 0.609587 tig0019188:+161325 None:intergenic
CAAGTACAACAACAAAAGGA+AGG 0.611484 tig0019188:-160474 Msa1371260:CDS
GCAATTATATGGCTGTGCTA+TGG 0.628621 tig0019188:-161312 Msa1371260:CDS
TGTAAGAAGAAAACAACAGG+AGG 0.632520 tig0019188:-162179 Msa1371260:CDS
AGTAAGTGATATAGATGGCG+AGG 0.639838 tig0019188:+162027 None:intergenic
AGTATTGTCTCTGTGAACCA+TGG 0.657818 tig0019188:+162833 None:intergenic
GAGGTGAACATTTAAGCTAG+AGG 0.674188 tig0019188:-162941 Msa1371260:five_prime_UTR
ATGCACTAAACAACACACAT+GGG 0.676219 tig0019188:+160377 None:intergenic
TGTTGATATTGAGACTACAA+TGG 0.678969 tig0019188:-160559 Msa1371260:CDS
TTACTGCTCCAAGAAAGCAA+GGG 0.726046 tig0019188:-162009 Msa1371260:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTATATATTA+AGG - tig0019188:162136-162155 Msa1371260:CDS 0.0%
!!! TATAATTTTTTTTAGTAGTA+TGG + tig0019188:161147-161166 None:intergenic 10.0%
!!! CATTTTTTTTTTAGTTTATA+TGG - tig0019188:162267-162286 Msa1371260:intron 10.0%
!! AGATTTAGTGATAAAAAATA+AGG - tig0019188:160406-160425 Msa1371260:three_prime_UTR 15.0%
!!! TCCAATTTTAAAAAATTAGT+TGG - tig0019188:160551-160570 Msa1371260:CDS 15.0%
!!! TCCAACTAATTTTTTAAAAT+TGG + tig0019188:160555-160574 None:intergenic 15.0%
!! AACAAAACAAAAAAGTTATA+AGG + tig0019188:160680-160699 None:intergenic 15.0%
!!! TTTTTTTGAAATACTTACAT+GGG + tig0019188:160746-160765 None:intergenic 15.0%
!!! TTTTTTTTGAAATACTTACA+TGG + tig0019188:160747-160766 None:intergenic 15.0%
!!! AATAGAAATTATAGTTGATA+AGG - tig0019188:162045-162064 Msa1371260:CDS 15.0%
!! ACATCTCAAAAATAATTATA+TGG - tig0019188:162213-162232 Msa1371260:intron 15.0%
!!! TTTTAGTTTATATGGTATTT+TGG - tig0019188:162275-162294 Msa1371260:intron 15.0%
!!! ACATTATTAATGTTTTTTGT+GGG - tig0019188:162342-162361 Msa1371260:intron 15.0%
!!! TTTGTTTTGTTTAATGTTGT+AGG - tig0019188:160689-160708 Msa1371260:CDS 20.0%
!!! TTTTTTGAAATACTTACATG+GGG + tig0019188:160745-160764 None:intergenic 20.0%
!!! ATTTTATGCCTACATAAAAA+CGG - tig0019188:160981-161000 Msa1371260:intron 20.0%
!!! AAGAATTAAGCAAATTTTGT+AGG + tig0019188:161579-161598 None:intergenic 20.0%
!! AATAAAATAATTGCTTGTCA+TGG + tig0019188:161846-161865 None:intergenic 20.0%
!! TTTATAGTAGCATAATTATC+CGG + tig0019188:161870-161889 None:intergenic 20.0%
!! GTTGAATTAATTAAGAGAAT+TGG + tig0019188:162248-162267 None:intergenic 20.0%
!!! CACATTATTAATGTTTTTTG+TGG - tig0019188:162341-162360 Msa1371260:intron 20.0%
!! CATTGAAAATCGTAAAATAT+GGG - tig0019188:162729-162748 Msa1371260:intron 20.0%
!! TGAAAAACATAAAACTAACT+AGG + tig0019188:162799-162818 None:intergenic 20.0%
!!! AACAGAGATTACATATTTTT+GGG + tig0019188:162842-162861 None:intergenic 20.0%
!!! AAACAGAGATTACATATTTT+TGG + tig0019188:162843-162862 None:intergenic 20.0%
!! AAAAATATGTAATCTCTGTT+TGG - tig0019188:162842-162861 Msa1371260:exon 20.0%
! TCCTATATTCAACATACAAA+AGG - tig0019188:160205-160224 Msa1371260:three_prime_UTR 25.0%
!! TCCTTTTGTATGTTGAATAT+AGG + tig0019188:160209-160228 None:intergenic 25.0%
!!! ATTTTTGTAGTTGGTATTCT+AGG - tig0019188:160279-160298 Msa1371260:three_prime_UTR 25.0%
! GTTATTTAATTCTTGTGAGA+AGG + tig0019188:160646-160665 None:intergenic 25.0%
!!! TTTTTGAAATACTTACATGG+GGG + tig0019188:160744-160763 None:intergenic 25.0%
!! TTTTATGCCTACATAAAAAC+GGG - tig0019188:160982-161001 Msa1371260:intron 25.0%
!! CCTCAAAGATATATTTGTTA+CGG - tig0019188:161803-161822 Msa1371260:intron 25.0%
!!! ACAAGCAATTATTTTATTCC+CGG - tig0019188:161848-161867 Msa1371260:intron 25.0%
! TTATAGTAGCATAATTATCC+GGG + tig0019188:161869-161888 None:intergenic 25.0%
! TAGCTAATAAAATTAGCATG+CGG - tig0019188:162068-162087 Msa1371260:CDS 25.0%
!!! AGTTTATATGGTATTTTGGT+TGG - tig0019188:162279-162298 Msa1371260:intron 25.0%
! GTTAATAGTATCAATCCATT+AGG + tig0019188:162314-162333 None:intergenic 25.0%
!!! TATCAACAACATTTTGAAGA+GGG + tig0019188:162515-162534 None:intergenic 25.0%
!!! ATATCAACAACATTTTGAAG+AGG + tig0019188:162516-162535 None:intergenic 25.0%
! AAATCAAGTACAACAACAAA+AGG - tig0019188:162608-162627 Msa1371260:intron 25.0%
! TGAGAAGTTTGATAAATTGA+AGG - tig0019188:162636-162655 Msa1371260:intron 25.0%
! GAGAAGTTTGATAAATTGAA+GGG - tig0019188:162637-162656 Msa1371260:intron 25.0%
! GCATTGAAAATCGTAAAATA+TGG - tig0019188:162728-162747 Msa1371260:intron 25.0%
! ACTAACTAGGCTATAATATA+TGG + tig0019188:162786-162805 None:intergenic 25.0%
TCAAACATATTCTGATACCA+TGG - tig0019188:160236-160255 Msa1371260:three_prime_UTR 30.0%
! AATACTGCGATTTTTGTAGT+TGG - tig0019188:160270-160289 Msa1371260:three_prime_UTR 30.0%
GAAAAAAAAATGTAGAGCTG+AGG + tig0019188:160321-160340 None:intergenic 30.0%
GTTTACAATCAAGTTTAGAG+AGG + tig0019188:160594-160613 None:intergenic 30.0%
GTTTGTAAGAAGAAAACAAC+AGG - tig0019188:160904-160923 Msa1371260:intron 30.0%
ATTATATACCCTTGCTTTCT+TGG + tig0019188:161088-161107 None:intergenic 30.0%
! CTGATTGGGTTGTTTAATTT+GGG - tig0019188:161353-161372 Msa1371260:CDS 30.0%
! TAATTTGGGAGGAATTTGTT+TGG - tig0019188:161367-161386 Msa1371260:CDS 30.0%
ATTTGTTCAATTTCAGAGAG+TGG - tig0019188:161689-161708 Msa1371260:CDS 30.0%
!! ATATAATTGCACTTGTTGTG+AGG + tig0019188:161764-161783 None:intergenic 30.0%
TCACAACAAGTGCAATTATA+TGG - tig0019188:161763-161782 Msa1371260:intron 30.0%
CCGTAACAAATATATCTTTG+AGG + tig0019188:161806-161825 None:intergenic 30.0%
ATTGCTTGTCATGGATAAAT+TGG + tig0019188:161837-161856 None:intergenic 30.0%
TATCTTTACAAGTGTTCCTA+TGG - tig0019188:161940-161959 Msa1371260:intron 30.0%
TTGATATCATCTTTGTGTTC+TGG + tig0019188:162465-162484 None:intergenic 30.0%
TGTTGATATTGAGACTACAA+TGG - tig0019188:162527-162546 Msa1371260:intron 30.0%
!!! AAGACAAGGAAGGTTTTGAA+GGG + tig0019188:160182-160201 None:intergenic 35.0%
TGAATATAGGAGAGAAGACA+AGG + tig0019188:160196-160215 None:intergenic 35.0%
CACTCTTGATCTAACCATTA+TGG - tig0019188:160494-160513 Msa1371260:CDS 35.0%
TATGATTCAGTCGACCATAA+TGG + tig0019188:160511-160530 None:intergenic 35.0%
GGCTATAAAGCAAAAGAAAG+AGG + tig0019188:160723-160742 None:intergenic 35.0%
TGTAAGAAGAAAACAACAGG+AGG - tig0019188:160907-160926 Msa1371260:intron 35.0%
!! CATTTCACCCGTTTTTATGT+AGG + tig0019188:160992-161011 None:intergenic 35.0%
ATCATCACCATCAATGCATT+TGG - tig0019188:161015-161034 Msa1371260:intron 35.0%
ATCATCAAGTTAGTGAACGA+GGG - tig0019188:161259-161278 Msa1371260:intron 35.0%
ATCTTCACATTGAAGCTGAT+TGG - tig0019188:161338-161357 Msa1371260:CDS 35.0%
TCTTCACATTGAAGCTGATT+GGG - tig0019188:161339-161358 Msa1371260:CDS 35.0%
! GCTGATTGGGTTGTTTAATT+TGG - tig0019188:161352-161371 Msa1371260:CDS 35.0%
!! ATTGGGTTGTTTAATTTGGG+AGG - tig0019188:161356-161375 Msa1371260:CDS 35.0%
! AGGCATAAACTCTACACTTT+TGG + tig0019188:161724-161743 None:intergenic 35.0%
AATGTGATACCCACAAAGTT+CGG + tig0019188:162375-162394 None:intergenic 35.0%
AACTTTGTGGGTATCACATT+TGG - tig0019188:162375-162394 Msa1371260:CDS 35.0%
! CACATTTGGAACAATTCAGA+TGG - tig0019188:162389-162408 Msa1371260:intron 35.0%
! GGTAGCTTTTGATCATTTAC+AGG + tig0019188:162444-162463 None:intergenic 35.0%
GAAGAAACAAAACCAAGTGA+AGG - tig0019188:162585-162604 Msa1371260:intron 35.0%
TGTACTTGATTTCCTTCACT+TGG + tig0019188:162600-162619 None:intergenic 35.0%
CAAGTACAACAACAAAAGGA+AGG - tig0019188:162612-162631 Msa1371260:intron 35.0%
ATGCACTAAACAACACACAT+GGG + tig0019188:162712-162731 None:intergenic 35.0%
AATGCACTAAACAACACACA+TGG + tig0019188:162713-162732 None:intergenic 35.0%
TCATACATGCATTTGTGCAA+GGG + tig0019188:162934-162953 None:intergenic 35.0%
TTCATACATGCATTTGTGCA+AGG + tig0019188:162935-162954 None:intergenic 35.0%
GAGGTGAACATTTAAGCTAG+AGG - tig0019188:160145-160164 Msa1371260:three_prime_UTR 40.0%
!! GAAGACAAGGAAGGTTTTGA+AGG + tig0019188:160183-160202 None:intergenic 40.0%
TATAGGAGAGAAGACAAGGA+AGG + tig0019188:160192-160211 None:intergenic 40.0%
AGTATTGTCTCTGTGAACCA+TGG + tig0019188:160256-160275 None:intergenic 40.0%
CGACTGAATCATAAGTCGAT+AGG - tig0019188:160518-160537 Msa1371260:CDS 40.0%
CTGAATCATAAGTCGATAGG+TGG - tig0019188:160521-160540 Msa1371260:CDS 40.0%
TTTCCAATCTGCTCCATATG+TGG - tig0019188:160930-160949 Msa1371260:intron 40.0%
CACACAACCAAATGCATTGA+TGG + tig0019188:161025-161044 None:intergenic 40.0%
AGTAAGTGATATAGATGGCG+AGG + tig0019188:161062-161081 None:intergenic 40.0%
GGAGCAGTAAGTGATATAGA+TGG + tig0019188:161067-161086 None:intergenic 40.0%
TTACTGCTCCAAGAAAGCAA+GGG - tig0019188:161077-161096 Msa1371260:intron 40.0%
CATCATCAAGTTAGTGAACG+AGG - tig0019188:161258-161277 Msa1371260:intron 40.0%
TCATCAAGTTAGTGAACGAG+GGG - tig0019188:161260-161279 Msa1371260:intron 40.0%
ACAGAACGTATCGAACTTCT+TGG - tig0019188:161425-161444 Msa1371260:intron 40.0%
AACGTATCGAACTTCTTGGA+TGG - tig0019188:161429-161448 Msa1371260:intron 40.0%
CTGCAAAAACACTAGTTGAG+AGG + tig0019188:161466-161485 None:intergenic 40.0%
ACACTCACCATAACGCTTAA+AGG + tig0019188:161491-161510 None:intergenic 40.0%
TATTCATGCTTAAGCGCACA+TGG + tig0019188:161667-161686 None:intergenic 40.0%
!! TAATTGCACTTGTTGTGAGG+AGG + tig0019188:161761-161780 None:intergenic 40.0%
GCAATTATATGGCTGTGCTA+TGG - tig0019188:161774-161793 Msa1371260:intron 40.0%
!!! GGTTGGCTTTTATGTCCTAA+TGG - tig0019188:162296-162315 Msa1371260:intron 40.0%
GAAGCAAGAAGAGAAGAAAC+AGG - tig0019188:162563-162582 Msa1371260:intron 40.0%
CACTCTTCAGTGCAATGCTT+TGG - tig0019188:160956-160975 Msa1371260:intron 45.0%
CTTACTGCTCCAAGAAAGCA+AGG - tig0019188:161076-161095 Msa1371260:intron 45.0%
TGCAGCACCTTTAAGCGTTA+TGG - tig0019188:161481-161500 Msa1371260:intron 45.0%
CTTAAGCGCACATGGTGATT+TGG + tig0019188:161659-161678 None:intergenic 45.0%
AGGAGGAGTGAAAGAGTGAA+AGG + tig0019188:161744-161763 None:intergenic 45.0%
AAGTGTTCCTATGGCTCAGA+TGG - tig0019188:161949-161968 Msa1371260:intron 45.0%
AGTGTTCCTATGGCTCAGAT+GGG - tig0019188:161950-161969 Msa1371260:intron 45.0%
! TTTTTCCCCATCTGAGCCAT+AGG + tig0019188:161959-161978 None:intergenic 45.0%
CAGCCACATATGGAGCAGAT+TGG + tig0019188:160936-160955 None:intergenic 50.0%
! CTGAAGAGTGCAGCCACATA+TGG + tig0019188:160946-160965 None:intergenic 50.0%
GTGTTCCTATGGCTCAGATG+GGG - tig0019188:161951-161970 Msa1371260:intron 50.0%
GGACAGCTTCCGAACTTTGT+GGG - tig0019188:162363-162382 Msa1371260:CDS 50.0%
GGGACAGCTTCCGAACTTTG+TGG - tig0019188:162362-162381 Msa1371260:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0019188 gene 160139 162969 160139 ID=Msa1371260;Name=Msa1371260
tig0019188 mRNA 160139 162969 160139 ID=Msa1371260-mRNA-1;Parent=Msa1371260;Name=Msa1371260-mRNA-1;_AED=0.04;_eAED=0.04;_QI=116|1|1|1|1|1|6|331|282
tig0019188 exon 160139 160739 160139 ID=Msa1371260-mRNA-1:exon:2124;Parent=Msa1371260-mRNA-1
tig0019188 exon 161284 161403 161284 ID=Msa1371260-mRNA-1:exon:2123;Parent=Msa1371260-mRNA-1
tig0019188 exon 161606 161770 161606 ID=Msa1371260-mRNA-1:exon:2122;Parent=Msa1371260-mRNA-1
tig0019188 exon 162010 162220 162010 ID=Msa1371260-mRNA-1:exon:2121;Parent=Msa1371260-mRNA-1
tig0019188 exon 162361 162397 162361 ID=Msa1371260-mRNA-1:exon:2120;Parent=Msa1371260-mRNA-1
tig0019188 exon 162808 162969 162808 ID=Msa1371260-mRNA-1:exon:2119;Parent=Msa1371260-mRNA-1
tig0019188 five_prime_UTR 162854 162969 162854 ID=Msa1371260-mRNA-1:five_prime_utr;Parent=Msa1371260-mRNA-1
tig0019188 CDS 162808 162853 162808 ID=Msa1371260-mRNA-1:cds;Parent=Msa1371260-mRNA-1
tig0019188 CDS 162361 162397 162361 ID=Msa1371260-mRNA-1:cds;Parent=Msa1371260-mRNA-1
tig0019188 CDS 162010 162220 162010 ID=Msa1371260-mRNA-1:cds;Parent=Msa1371260-mRNA-1
tig0019188 CDS 161606 161770 161606 ID=Msa1371260-mRNA-1:cds;Parent=Msa1371260-mRNA-1
tig0019188 CDS 161284 161403 161284 ID=Msa1371260-mRNA-1:cds;Parent=Msa1371260-mRNA-1
tig0019188 CDS 160470 160739 160470 ID=Msa1371260-mRNA-1:cds;Parent=Msa1371260-mRNA-1
tig0019188 three_prime_UTR 160139 160469 160139 ID=Msa1371260-mRNA-1:three_prime_utr;Parent=Msa1371260-mRNA-1
Gene Sequence

>Msa1371260

ATGGTTCACAGAGACAATACTGCGATTTTTGTAGTTGGTATTCTAGGTAACATTGCCTCTTTCTTTTGCTTTATAGCCCCCATATCAATATTTTATCAAGTTTGTAAGAAGAAAACAACAGGAGGTTTCCAATCTGCTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATATTTTATGCCTACATAAAAACGGGTGAAATGCTTATCATCACCATCAATGCATTTGGTTGTGTGATAGAAACAATTTACCTCGCCATCTATATCACTTACTGCTCCAAGAAAGCAAGGATCTTCACATTGAAGCTGATTGGGTTGTTTAATTTGGGAGGAATTTGTTTGGTGATTATTCTAACACATGTTCTAGCAAAAGAACGAACAGAACGTATCGAACTTCTTGGATGGATTTGTGTTGTCCTCTCAACTAGTGTTTTTGCAGCACCTTTAAGCGTTATGAGAGTGGTTATTCGCACCAAAAGTGTAGAGTTTATGCCTTTCACTCTTTCACTCCTCCTCACAACAAGTGCAATTATATGGCTGTGCTATGGTATTCTCCTCAAAGATATATTTGTTACGCTTCCGAACTTTGTGGGTATCACATTTGGAACAATTCAGATGGTGTTGTATGCAATATACAGAAAAAACAAGCCTGTAAATGATCAAAAGCTACCAGAACACAAAGATGATATCAATGAGAATCAGCTTCAAGTAGTAGTGATCCCTCTTCAAAATGTTGTTGATATTGAGACTACAATGGAGAATAAAGAAGAGAAGCAAGAAGAGAAGAAACAGGAAGAAACAAAACCAAGTGAAGGAAATCAAGTACAACAACAAAAGGAAGGTTGA

Protein sequence

>Msa1371260

MVHRDNTAIFVVGILGNIASFFCFIAPISIFYQVCKKKTTGGFQSAPYVAALFSAMLWIFYAYIKTGEMLIITINAFGCVIETIYLAIYITYCSKKARIFTLKLIGLFNLGGICLVIILTHVLAKERTERIELLGWICVVLSTSVFAAPLSVMRVVIRTKSVEFMPFTLSLLLTTSAIIWLCYGILLKDIFVTLPNFVGITFGTIQMVLYAIYRKNKPVNDQKLPEHKDDINENQLQVVVIPLQNVVDIETTMENKEEKQEEKKQEETKPSEGNQVQQQKEG*