AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0564580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564580 MtrunA17_Chr8g0378721 92.628 529 39 0 1 529 1 529 0.0 1030
Msa0564580 MtrunA17_Chr8g0378671 87.121 528 65 2 1 527 1 526 0.0 966
Msa0564580 MtrunA17_Chr8g0378701 88.482 382 44 0 1 382 15 396 0.0 715
Msa0564580 MtrunA17_Chr8g0378691 91.096 146 13 0 382 527 9 154 5.01e-91 276
Msa0564580 MtrunA17_Chr4g0027961 36.000 475 255 17 78 527 89 539 4.05e-84 271
Msa0564580 MtrunA17_Chr3g0136771 28.306 431 255 12 67 465 84 492 1.38e-45 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564580 AT4G25650.1 64.316 468 158 3 69 527 67 534 0.0 667
Msa0564580 AT4G25650.2 61.303 491 158 4 69 527 67 557 0.0 654
Msa0564580 AT3G44880.1 34.733 524 275 20 43 527 39 534 9.11e-85 273
Msa0564580 AT2G24820.1 27.533 454 268 12 49 465 50 479 2.74e-46 170
Msa0564580 AT1G44446.4 22.162 370 211 15 85 431 119 434 2.07e-11 66.6
Msa0564580 AT1G44446.1 22.162 370 211 15 85 431 221 536 2.67e-11 66.6

Find 158 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAGGTGCAAGTTTATT+TGG 0.156557 4_1:-65246087 None:intergenic
CATTAGGAATTCAAATTAAA+TGG 0.162683 4_1:-65248666 None:intergenic
CAACAAAGAATATAGGAATT+TGG 0.172236 4_1:-65248803 None:intergenic
TCTGAACTTGTTTCATCTTC+AGG 0.212251 4_1:-65244053 None:intergenic
TTGTATTGAGGATCAGTATT+TGG 0.266413 4_1:-65245118 None:intergenic
CACCACATTGAGACTCTTAT+AGG 0.274363 4_1:-65248305 None:intergenic
ATCATATCAGTTGCTTCAAT+TGG 0.287082 4_1:+65248343 Msa0564580:CDS
CTGCTGTTGCCGGGACTAAC+AGG 0.295981 4_1:-65246256 None:intergenic
GAAGTGTTCCCACGAATTAA+TGG 0.299892 4_1:-65243951 None:intergenic
CCTGTCCATAAGTTGTTCTC+TGG 0.305227 4_1:-65247168 None:intergenic
ATCCACAGCCCAAAGTTTCT+TGG 0.314198 4_1:-65246295 None:intergenic
AATGAGGGCACTGTTGCTTT+TGG 0.315605 4_1:+65248830 Msa0564580:three_prime_UTR
GGAAACAGAGATATTGCTTA+TGG 0.316235 4_1:+65245211 Msa0564580:CDS
CAATGGTTTCACAGCAAATC+AGG 0.317290 4_1:+65246011 Msa0564580:CDS
CTACTACTGGAATCTGTTAA+TGG 0.328223 4_1:-65244008 None:intergenic
AACAAAGAATATAGGAATTT+GGG 0.330074 4_1:-65248802 None:intergenic
CAAATTCCTATATTCTTTGT+TGG 0.340214 4_1:+65248804 Msa0564580:three_prime_UTR
TATAGCAAGATGTTAGCATT+AGG 0.350375 4_1:-65248682 None:intergenic
ACCTCCCAGAGAACAACTTA+TGG 0.350458 4_1:+65247163 Msa0564580:CDS
CCGTCCTTTACTAGCGTAAT+GGG 0.353585 4_1:+65245190 Msa0564580:CDS
GGGATGTATGTTGCTTTGTT+TGG 0.365055 4_1:+65248741 Msa0564580:three_prime_UTR
CCAAATCAGTCTGCTGTTGC+CGG 0.371564 4_1:-65246266 None:intergenic
GGTGCTTCCCAAGAAACTTT+GGG 0.374338 4_1:+65246287 Msa0564580:CDS
GTAGTTACCGGAGGTCCTTC+AGG 0.376463 4_1:-65244347 None:intergenic
CACGTGAAGGTTACTACTAC+TGG 0.379514 4_1:-65244021 None:intergenic
ATGTTAAATGATTTAGCTTA+GGG 0.379749 4_1:-65243768 None:intergenic
TGGGGATTGATGTTGTTATA+TGG 0.385364 4_1:+65244159 Msa0564580:CDS
AATGTTAAATGATTTAGCTT+AGG 0.390329 4_1:-65243769 None:intergenic
AGAATGGTATCGTGTGGTTT+TGG 0.391412 4_1:+65245095 Msa0564580:CDS
AAGGCAGATGCTCTTGTGAT+TGG 0.399532 4_1:+65247062 Msa0564580:CDS
CTCTGGGAGGTGTAGGAGGA+AGG 0.400762 4_1:-65247151 None:intergenic
CCGGCAACAGCAGACTGATT+TGG 0.404958 4_1:+65246266 Msa0564580:CDS
AAGGACGGATCATCAATTTC+TGG 0.405521 4_1:-65245175 None:intergenic
ATTCATCCAACAAAGAATAT+AGG 0.408603 4_1:-65248810 None:intergenic
TGGTGCTTCCCAAGAAACTT+TGG 0.411359 4_1:+65246286 Msa0564580:CDS
ATACCATTCTGCACAGTACT+TGG 0.413715 4_1:-65245082 None:intergenic
ACAAGAGCATCTGCCTTTGT+TGG 0.416937 4_1:-65247056 None:intergenic
AAACATTGCCTTCTGCCAAT+TGG 0.423428 4_1:-65247030 None:intergenic
TCCACAGCCCAAAGTTTCTT+GGG 0.430795 4_1:-65246294 None:intergenic
GTAATAATATCTTTGTATTG+AGG 0.430842 4_1:-65245130 None:intergenic
AGTTCAGAAGAAATTTGCTT+TGG 0.431020 4_1:+65246219 Msa0564580:CDS
CATCAATTTCTGGTATGAAT+GGG 0.432152 4_1:-65245165 None:intergenic
AGCTACAACAAGAAATTCAA+TGG 0.435956 4_1:+65248399 Msa0564580:CDS
TGAAGGAAGGATTGATCAAT+GGG 0.437126 4_1:+65244250 Msa0564580:CDS
TCATCAATTTCTGGTATGAA+TGG 0.439816 4_1:-65245166 None:intergenic
TCCCAAGAAACTTTGGGCTG+TGG 0.443485 4_1:+65246293 Msa0564580:CDS
AAGAAATTCAATGGTTGTGT+TGG 0.446962 4_1:+65248408 Msa0564580:CDS
AATATGCAATTTCAGGTATG+AGG 0.448521 4_1:+65245767 Msa0564580:intron
ATTGAAGAGTTAGATGTCAA+TGG 0.453702 4_1:+65245994 Msa0564580:CDS
TGTTCCCTTCTGCGAAGTAA+TGG 0.461291 4_1:-65243819 None:intergenic
CTGTCCATAAGTTGTTCTCT+GGG 0.462546 4_1:-65247167 None:intergenic
TATTCTTTGTTGGATGAATG+AGG 0.464146 4_1:+65248814 Msa0564580:three_prime_UTR
CATCTAACTCTTCAATTGAC+AGG 0.467350 4_1:-65245987 None:intergenic
TCATATCAGTTGCTTCAATT+GGG 0.473164 4_1:+65248344 Msa0564580:CDS
ATATGTGGTTCAAGTGCTAT+TGG 0.474819 4_1:-65243879 None:intergenic
TGCTTTCATTCGCGTTGTCA+CGG 0.476403 4_1:+65248434 Msa0564580:CDS
GAAACAGAGATATTGCTTAT+GGG 0.479650 4_1:+65245212 Msa0564580:CDS
TGCACCTTCTGATGAAACTA+AGG 0.483654 4_1:+65246098 Msa0564580:CDS
CTGAAGGAAGGATTGATCAA+TGG 0.483984 4_1:+65244249 Msa0564580:CDS
GAATGGAGAGGAAAATATAG+TGG 0.487849 4_1:+65247125 Msa0564580:CDS
GATTGATGTTGTTATATGGT+GGG 0.490033 4_1:+65244163 Msa0564580:CDS
TTGGTACTTAAGAGGAGCGT+TGG 0.490914 4_1:+65248592 Msa0564580:three_prime_UTR
GATAATGAAACTAGAGGCTC+AGG 0.491540 4_1:-65243746 None:intergenic
CAACACTTCCATTAATTCGT+GGG 0.491754 4_1:+65243943 Msa0564580:CDS
TGATTGCAAGTTCATTCCTC+AGG 0.492594 4_1:+65244319 Msa0564580:CDS
TCCGTCCTTTACTAGCGTAA+TGG 0.492928 4_1:+65245189 Msa0564580:CDS
CAAATCAGTCTGCTGTTGCC+GGG 0.495892 4_1:-65246265 None:intergenic
ATACACACACATAACAAAGT+TGG 0.497222 4_1:-65248529 None:intergenic
ATTTGTATTCCTGTTAGTCC+CGG 0.500956 4_1:+65246247 Msa0564580:CDS
GGATTGATGTTGTTATATGG+TGG 0.502833 4_1:+65244162 Msa0564580:CDS
TGGATGTTGGTCAAGCCAAT+TGG 0.502926 4_1:+65247015 Msa0564580:CDS
GTTACCTTAGTTTCATCAGA+AGG 0.511824 4_1:-65246102 None:intergenic
GATTGTTGCCACAATGAAGC+AGG 0.513141 4_1:+65248366 Msa0564580:CDS
TTGTTCCATTACTTCGCAGA+AGG 0.519744 4_1:+65243814 Msa0564580:five_prime_UTR
TGTGCATATGTAGTATGTGC+AGG 0.520193 4_1:-65245813 None:intergenic
GGCACCTCCTGAAGGACCTC+CGG 0.521757 4_1:+65244340 Msa0564580:CDS
TCAACACTTCCATTAATTCG+TGG 0.523749 4_1:+65243942 Msa0564580:CDS
AAATGGTTAAAGAAGTATGC+AGG 0.524010 4_1:+65247092 Msa0564580:CDS
AGTTGTTCTCTGGGAGGTGT+AGG 0.528179 4_1:-65247158 None:intergenic
CCTCATGCTAAGAAAGTGAT+GGG 0.530068 4_1:+65244140 Msa0564580:CDS
TCTGGGAGGTGTAGGAGGAA+GGG 0.530338 4_1:-65247150 None:intergenic
AGATCACATATTGGCATCAA+AGG 0.530584 4_1:-65244104 None:intergenic
GTTTCACAGCAAATCAGGGT+TGG 0.531039 4_1:+65246016 Msa0564580:CDS
TTCTGTTGTGGAACATGTGA+AGG 0.532955 4_1:+65248719 Msa0564580:three_prime_UTR
GTTTCCCATTACGCTAGTAA+AGG 0.533694 4_1:-65245194 None:intergenic
CTGGAATCTGTTAATGGAGA+AGG 0.535723 4_1:-65244002 None:intergenic
AACTCTTACAATTCACCGTA+TGG 0.536185 4_1:-65248273 None:intergenic
ATGCAGGTGATCAAGTTGAA+TGG 0.536676 4_1:+65247108 Msa0564580:CDS
AGATTAGCACCTTTGTCTGA+AGG 0.545291 4_1:+65244233 Msa0564580:CDS
GACAAAGGTGCTAATCTATG+AGG 0.545842 4_1:-65244227 None:intergenic
ATGAACACTCCAAAACCAAA+AGG 0.547696 4_1:+65245846 Msa0564580:CDS
TAGCACCTTTGTCTGAAGGA+AGG 0.548699 4_1:+65244237 Msa0564580:CDS
ATTCCTCAGGCACCTCCTGA+AGG 0.548802 4_1:+65244332 Msa0564580:CDS
AGGTTACAGTGTGTGTATCA+TGG 0.551337 4_1:+65244275 Msa0564580:CDS
ATTCTTTGTTGGATGAATGA+GGG 0.551696 4_1:+65248815 Msa0564580:three_prime_UTR
TTCACATGTTCCACAACAGA+AGG 0.552489 4_1:-65248717 None:intergenic
CCAGAGAACAACTTATGGAC+AGG 0.552971 4_1:+65247168 Msa0564580:CDS
TGGAGATTAATTTCAGCGAA+AGG 0.555282 4_1:-65248509 None:intergenic
TGCCACAATGAAGCAGGGTG+TGG 0.560699 4_1:+65248372 Msa0564580:CDS
TGTTCTCTGGGAGGTGTAGG+AGG 0.562948 4_1:-65247155 None:intergenic
TTGACAAAATTGTACCGCGA+TGG 0.563874 4_1:+65246317 Msa0564580:CDS
ATCAATTTCTGGTATGAATG+GGG 0.563979 4_1:-65245164 None:intergenic
ACCTCATGCTAAGAAAGTGA+TGG 0.565040 4_1:+65244139 Msa0564580:CDS
TACAGTGTGTGTATCATGGT+TGG 0.568463 4_1:+65244279 Msa0564580:CDS
GAAAGGCGTGGTTGTAGTCA+TGG 0.570529 4_1:-65248492 None:intergenic
AGGTGCTAATCTATGAGGAC+AGG 0.570961 4_1:-65244222 None:intergenic
GAAGGATTGATCAATGGGGT+AGG 0.572052 4_1:+65244255 Msa0564580:CDS
GTATATGCATAAAAGATGCT+TGG 0.572412 4_1:-65246060 None:intergenic
TACCCAAGTACTGTGCAGAA+TGG 0.574247 4_1:+65245079 Msa0564580:CDS
CCCATCACTTTCTTAGCATG+AGG 0.575414 4_1:-65244140 None:intergenic
CAAGTTCAGAGAAATTTGAC+TGG 0.578841 4_1:+65244066 Msa0564580:CDS
GTGAAAGCTGATAGAGAAGG+AGG 0.578869 4_1:+65245952 Msa0564580:intron
AATGGTTTCACAGCAAATCA+GGG 0.580383 4_1:+65246012 Msa0564580:CDS
CCCATTACGCTAGTAAAGGA+CGG 0.582016 4_1:-65245190 None:intergenic
TCGCAGAAGGGAACAAACAA+TGG 0.585487 4_1:+65243827 Msa0564580:exon
AGTACCAATAAAACAAGTAA+CGG 0.587278 4_1:-65248577 None:intergenic
TCAATCCTTCCTTCAGACAA+AGG 0.589654 4_1:-65244242 None:intergenic
CATACTACATATGCACACTA+CGG 0.590698 4_1:+65245819 Msa0564580:CDS
GGCAATGTTTGTGCCAACAA+AGG 0.593457 4_1:+65247043 Msa0564580:CDS
TACCATTCTGCACAGTACTT+GGG 0.594856 4_1:-65245081 None:intergenic
CGTGGTTGTAGTCATGGTAA+CGG 0.596317 4_1:-65248486 None:intergenic
TGTTCCATTACTTCGCAGAA+GGG 0.596759 4_1:+65243815 Msa0564580:five_prime_UTR
GGTTCTGATTGAAAACCTCA+TGG 0.598068 4_1:+65245788 Msa0564580:CDS
CAGGTTCATCATCCACGTGA+AGG 0.603801 4_1:-65244034 None:intergenic
TATGCATAAAAGATGCTTGG+TGG 0.606284 4_1:-65246057 None:intergenic
ATTAATTTCAGCGAAAGGCG+TGG 0.609911 4_1:-65248504 None:intergenic
TCTTCAATTGACAGGTCAAG+TGG 0.615205 4_1:-65245979 None:intergenic
AATACAAAGATATTATTACA+AGG 0.616833 4_1:+65245134 Msa0564580:CDS
AACCACACCCTGCTTCATTG+TGG 0.629575 4_1:-65248374 None:intergenic
GGGATAGAAATGAGAATGCA+TGG 0.630522 4_1:+65244183 Msa0564580:CDS
TGGTCAAGCCAATTGGCAGA+AGG 0.632277 4_1:+65247022 Msa0564580:CDS
TCCATAAGTTGTTCTCTGGG+AGG 0.632920 4_1:-65247164 None:intergenic
TCTGTTGTGGAACATGTGAA+GGG 0.634943 4_1:+65248720 Msa0564580:three_prime_UTR
CTTAGGGATAATGAAACTAG+AGG 0.635581 4_1:-65243752 None:intergenic
GGTCCTTCAGGAGGTGCCTG+AGG 0.637367 4_1:-65244335 None:intergenic
CAGTAGTAGTAACCTTCACG+TGG 0.639581 4_1:+65244022 Msa0564580:CDS
TACGTATCTTCTCCATGTTG+AGG 0.640030 4_1:+65246378 Msa0564580:CDS
GAACAGGTACTGGAGCCATA+CGG 0.641416 4_1:+65248258 Msa0564580:intron
CTATAAGAGTCTCAATGTGG+TGG 0.643278 4_1:+65248306 Msa0564580:CDS
GTGCATATGTAGTATGTGCA+GGG 0.644617 4_1:-65245812 None:intergenic
TTTCATTCGCGTTGTCACGG+TGG 0.645969 4_1:+65248437 Msa0564580:CDS
TAAAAGAAATTACCTCAACA+TGG 0.650469 4_1:-65246390 None:intergenic
TCAATTTCTGGTATGAATGG+GGG 0.651927 4_1:-65245163 None:intergenic
ACAGTGAAAGCTGATAGAGA+AGG 0.655364 4_1:+65245949 Msa0564580:intron
GGTGATCAAGTTGAATGGAG+AGG 0.656464 4_1:+65247113 Msa0564580:CDS
TAGTATGTGCAGGGTCCATG+AGG 0.657402 4_1:-65245803 None:intergenic
TCACATGTTCCACAACAGAA+GGG 0.659757 4_1:-65248716 None:intergenic
TTGGAGAAATCATGCAGATG+AGG 0.663485 4_1:+65248760 Msa0564580:three_prime_UTR
GGAGCGTTGGAACATTTGTG+TGG 0.668212 4_1:+65248605 Msa0564580:three_prime_UTR
TGTTAATGGAGAAGGTGACA+AGG 0.682450 4_1:-65243994 None:intergenic
CTGTTGTGGAACATGTGAAG+GGG 0.699583 4_1:+65248721 Msa0564580:three_prime_UTR
GTTACCGGAGGTCCTTCAGG+AGG 0.700851 4_1:-65244344 None:intergenic
AATTTGACTGGTACTCACAG+TGG 0.710936 4_1:+65244078 Msa0564580:CDS
ATTGTTGCCACAATGAAGCA+GGG 0.715859 4_1:+65248367 Msa0564580:CDS
CTCATGCTAAGAAAGTGATG+GGG 0.722487 4_1:+65244141 Msa0564580:CDS
AGCCTATAAGAGTCTCAATG+TGG 0.722672 4_1:+65248303 Msa0564580:CDS
CTGTGCAGAATGGTATCGTG+TGG 0.742797 4_1:+65245089 Msa0564580:CDS
GAAGGAAGGATTGATCAATG+GGG 0.807729 4_1:+65244251 Msa0564580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAATATTGATTTTTTTAA+TGG - chr4_1:65243906-65243925 None:intergenic 10.0%
!! AAAACAAATAAAAATTCAAA+GGG - chr4_1:65245561-65245580 None:intergenic 10.0%
!! TAAAACAAATAAAAATTCAA+AGG - chr4_1:65245562-65245581 None:intergenic 10.0%
!! TAAAAATACCTTTATATAAA+AGG + chr4_1:65245616-65245635 Msa0564580:intron 10.0%
!!! TAAATGAATAATTTTTTAAC+AGG + chr4_1:65245646-65245665 Msa0564580:intron 10.0%
!!! TTTTATAATATACAAATCAT+TGG + chr4_1:65246408-65246427 Msa0564580:intron 10.0%
!!! AATGAAATATTTTAATATCA+AGG + chr4_1:65247925-65247944 Msa0564580:intron 10.0%
!!! TTTTATATTTGACAAATTAT+AGG - chr4_1:65248191-65248210 None:intergenic 10.0%
!! TCCATATATTCAATTATTAT+CGG - chr4_1:65244767-65244786 None:intergenic 15.0%
!! AATACAAAGATATTATTACA+AGG + chr4_1:65245134-65245153 Msa0564580:CDS 15.0%
!! ATTTAACTCATAATTTCTTA+GGG - chr4_1:65245496-65245515 None:intergenic 15.0%
!! TATTTAACTCATAATTTCTT+AGG - chr4_1:65245497-65245516 None:intergenic 15.0%
!!! CATTTTTCATAATATAAGTA+AGG - chr4_1:65246146-65246165 None:intergenic 15.0%
!! TTGATAGGAAAAAAAAATAA+TGG + chr4_1:65246995-65247014 Msa0564580:intron 15.0%
!!! AAACATTTTAAAGTAAAAAC+AGG - chr4_1:65247648-65247667 None:intergenic 15.0%
!!! TTAAAATGTTTTAGTTTTGT+TGG + chr4_1:65247657-65247676 Msa0564580:intron 15.0%
!!! TAAAATGTTTTAGTTTTGTT+GGG + chr4_1:65247658-65247677 Msa0564580:intron 15.0%
!!! ATGTTAAATGATTTAGCTTA+GGG - chr4_1:65243771-65243790 None:intergenic 20.0%
!!! AATGTTAAATGATTTAGCTT+AGG - chr4_1:65243772-65243791 None:intergenic 20.0%
!! TCCGATAATAATTGAATATA+TGG + chr4_1:65244763-65244782 Msa0564580:intron 20.0%
!! GTAATAATATCTTTGTATTG+AGG - chr4_1:65245133-65245152 None:intergenic 20.0%
!! AAATACCTTTATATAAAAGG+TGG + chr4_1:65245619-65245638 Msa0564580:intron 20.0%
!!! TAAAAGATCTGTGATTTTAT+AGG + chr4_1:65245678-65245697 Msa0564580:intron 20.0%
!!! AAAAGATCTGTGATTTTATA+GGG + chr4_1:65245679-65245698 Msa0564580:intron 20.0%
!! GTGTCATATATAAAACAAAT+AGG - chr4_1:65245909-65245928 None:intergenic 20.0%
!!! TGGATAATATTTTTCTTCAA+CGG - chr4_1:65246478-65246497 None:intergenic 20.0%
!! TTTCTTCTGATTACTTTATT+AGG + chr4_1:65246557-65246576 Msa0564580:intron 20.0%
!! GATATAATTACTAAAATGCT+TGG + chr4_1:65246619-65246638 Msa0564580:intron 20.0%
!!! GAAAAAAAAATAATGGATGT+TGG + chr4_1:65247002-65247021 Msa0564580:CDS 20.0%
!! CTTAAAACTTCACATATTAA+AGG - chr4_1:65247265-65247284 None:intergenic 20.0%
!!! AATATGTGAAGTTTTAAGTA+TGG + chr4_1:65247267-65247286 Msa0564580:intron 20.0%
!! TAAAGTAAAAACAGGTAAAA+GGG - chr4_1:65247640-65247659 None:intergenic 20.0%
!! TTAAAGTAAAAACAGGTAAA+AGG - chr4_1:65247641-65247660 None:intergenic 20.0%
!!! AAAATGTTTTAGTTTTGTTG+GGG + chr4_1:65247659-65247678 Msa0564580:intron 20.0%
!! AAAGAGTTATTGTGTATTAA+GGG - chr4_1:65247814-65247833 None:intergenic 20.0%
!! AAAAGAGTTATTGTGTATTA+AGG - chr4_1:65247815-65247834 None:intergenic 20.0%
!!! ACAATAACTCTTTTGATATA+AGG + chr4_1:65247821-65247840 Msa0564580:intron 20.0%
!! ATAATAAGTAAGTACGTATA+AGG + chr4_1:65247853-65247872 Msa0564580:intron 20.0%
!! AAAATAAGTAACTCTATTGA+AGG + chr4_1:65247885-65247904 Msa0564580:intron 20.0%
!! CATTAGGAATTCAAATTAAA+TGG - chr4_1:65248669-65248688 None:intergenic 20.0%
!! AACAAAGAATATAGGAATTT+GGG - chr4_1:65248805-65248824 None:intergenic 20.0%
!!! GATTTTTTTAATGGGATATG+TGG - chr4_1:65243897-65243916 None:intergenic 25.0%
! ATAACTTAACAATTGAATGC+AGG + chr4_1:65244459-65244478 Msa0564580:intron 25.0%
! AATGAGATAACAAATAACTC+AGG + chr4_1:65244497-65244516 Msa0564580:intron 25.0%
! ATGAGATAACAAATAACTCA+GGG + chr4_1:65244498-65244517 Msa0564580:intron 25.0%
!!! TTGTTTTGATGCATTTACTT+TGG + chr4_1:65245005-65245024 Msa0564580:intron 25.0%
!! TTTCTTTTGTAGAACTCTAA+TGG + chr4_1:65245265-65245284 Msa0564580:intron 25.0%
!! TTCTTTTGTAGAACTCTAAT+GGG + chr4_1:65245266-65245285 Msa0564580:intron 25.0%
!! GTCATTGATAATTGATTGAT+AGG + chr4_1:65245384-65245403 Msa0564580:intron 25.0%
!!! AAGCAAATACTATGGTTTTT+TGG - chr4_1:65245723-65245742 None:intergenic 25.0%
! AAAAAACCATAGTATTTGCT+TGG + chr4_1:65245722-65245741 Msa0564580:intron 25.0%
! AATATACCAAGCAAATACTA+TGG - chr4_1:65245731-65245750 None:intergenic 25.0%
! TTTGTTGAATATGCAATTTC+AGG + chr4_1:65245760-65245779 Msa0564580:intron 25.0%
!! TATCATATATGCATACCTTT+TGG - chr4_1:65245864-65245883 None:intergenic 25.0%
!! AATGTGCAACAAATTTTATG+TGG + chr4_1:65246162-65246181 Msa0564580:intron 25.0%
!! ATGTGCAACAAATTTTATGT+GGG + chr4_1:65246163-65246182 Msa0564580:intron 25.0%
!! TTTTCATGTTAGACAAAACT+TGG + chr4_1:65246342-65246361 Msa0564580:CDS 25.0%
! TAAAAGAAATTACCTCAACA+TGG - chr4_1:65246393-65246412 None:intergenic 25.0%
! ATATTGTTATGTAACAGTAC+TGG - chr4_1:65246498-65246517 None:intergenic 25.0%
! CTTCTTGAATTATGAAAGAT+TGG + chr4_1:65246744-65246763 Msa0564580:intron 25.0%
!!! TTGTGATTGGTTTTAGAAAA+TGG + chr4_1:65247075-65247094 Msa0564580:CDS 25.0%
! CATATGATTGCATTTAAACA+TGG + chr4_1:65247198-65247217 Msa0564580:intron 25.0%
! GTCAATTCAAATAAGAAAAG+TGG - chr4_1:65247496-65247515 None:intergenic 25.0%
!!! CTTTTGACTTGAATTTTGAA+TGG + chr4_1:65247515-65247534 Msa0564580:intron 25.0%
!!! CTTATAATTTTGCTATATCC+CGG + chr4_1:65247580-65247599 Msa0564580:intron 25.0%
!!! AAATGTTTTAGTTTTGTTGG+GGG + chr4_1:65247660-65247679 Msa0564580:intron 25.0%
!!! TTGGAATTTTGATACATTGA+AGG - chr4_1:65247735-65247754 None:intergenic 25.0%
! AAGAGTTATTGTGTATTAAG+GGG - chr4_1:65247813-65247832 None:intergenic 25.0%
! AAGATACATTACCAACAAAA+CGG - chr4_1:65248061-65248080 None:intergenic 25.0%
! AAATTCTTCACTTCAAATCA+CGG - chr4_1:65248149-65248168 None:intergenic 25.0%
! AGTACCAATAAAACAAGTAA+CGG - chr4_1:65248580-65248599 None:intergenic 25.0%
!!! TTGTTTTATTGGTACTTAAG+AGG + chr4_1:65248584-65248603 Msa0564580:three_prime_UTR 25.0%
! CAACAAAGAATATAGGAATT+TGG - chr4_1:65248806-65248825 None:intergenic 25.0%
! CAAATTCCTATATTCTTTGT+TGG + chr4_1:65248804-65248823 Msa0564580:three_prime_UTR 25.0%
! ATTCATCCAACAAAGAATAT+AGG - chr4_1:65248813-65248832 None:intergenic 25.0%
AATGGAACAAGAGAAAAAAG+TGG - chr4_1:65243804-65243823 None:intergenic 30.0%
! CTTTTGTCAAGATCACATAT+TGG - chr4_1:65244116-65244135 None:intergenic 30.0%
GATTGATGTTGTTATATGGT+GGG + chr4_1:65244163-65244182 Msa0564580:CDS 30.0%
!! TATCATGGTTGGTGTTTTAA+TGG + chr4_1:65244290-65244309 Msa0564580:CDS 30.0%
AATGCAGGAATAGAATTAGA+TGG + chr4_1:65244474-65244493 Msa0564580:intron 30.0%
!! GATGTTTTATTGCTATTACG+TGG + chr4_1:65244632-65244651 Msa0564580:intron 30.0%
ATTGGATTTGATGTTTGTGT+CGG - chr4_1:65244723-65244742 None:intergenic 30.0%
! TGTTTCCATATTTGAAGTGT+CGG + chr4_1:65244837-65244856 Msa0564580:intron 30.0%
TACATATCTAAACGTGTTCT+CGG - chr4_1:65244873-65244892 None:intergenic 30.0%
GCAACTAGAAGAAATTTAGT+TGG - chr4_1:65244903-65244922 None:intergenic 30.0%
TTGTATTGAGGATCAGTATT+TGG - chr4_1:65245121-65245140 None:intergenic 30.0%
!! ATCAATTTCTGGTATGAATG+GGG - chr4_1:65245167-65245186 None:intergenic 30.0%
!! CATCAATTTCTGGTATGAAT+GGG - chr4_1:65245168-65245187 None:intergenic 30.0%
!! TCATCAATTTCTGGTATGAA+TGG - chr4_1:65245169-65245188 None:intergenic 30.0%
GAAACAGAGATATTGCTTAT+GGG + chr4_1:65245212-65245231 Msa0564580:CDS 30.0%
TACTCAAACACATCTGTATA+TGG + chr4_1:65245336-65245355 Msa0564580:intron 30.0%
! AGTCTCCACCTTTTATATAA+AGG - chr4_1:65245627-65245646 None:intergenic 30.0%
! AATATGCAATTTCAGGTATG+AGG + chr4_1:65245767-65245786 Msa0564580:intron 30.0%
!!! ATATGCATACCTTTTGGTTT+TGG - chr4_1:65245858-65245877 None:intergenic 30.0%
ATTGAAGAGTTAGATGTCAA+TGG + chr4_1:65245994-65246013 Msa0564580:CDS 30.0%
GTATATGCATAAAAGATGCT+TGG - chr4_1:65246063-65246082 None:intergenic 30.0%
! AGTTCAGAAGAAATTTGCTT+TGG + chr4_1:65246219-65246238 Msa0564580:CDS 30.0%
!! GCGTAATTGATTTTTCATAC+CGG + chr4_1:65246721-65246740 Msa0564580:intron 30.0%
TCTTTCATAATTCAAGAAGC+CGG - chr4_1:65246743-65246762 None:intergenic 30.0%
!! CATCCATTTTTCTTAGTCTT+GGG + chr4_1:65246811-65246830 Msa0564580:intron 30.0%
TCAACAATTCGACCAAAATA+AGG - chr4_1:65246890-65246909 None:intergenic 30.0%
! AAATGGTTAAAGAAGTATGC+AGG + chr4_1:65247092-65247111 Msa0564580:CDS 30.0%
ATACGATTCACATGTATAGT+AGG - chr4_1:65247303-65247322 None:intergenic 30.0%
!!! AATGTTTTAGTTTTGTTGGG+GGG + chr4_1:65247661-65247680 Msa0564580:intron 30.0%
!!! GACTATTTTGACTAACAAAG+TGG - chr4_1:65247947-65247966 None:intergenic 30.0%
AAGGGGTTATTTAAGCTTTA+GGG - chr4_1:65247796-65247815 None:intergenic 30.0%
TAAGGGGTTATTTAAGCTTT+AGG - chr4_1:65247797-65247816 None:intergenic 30.0%
!! TTTGCTATTTCGATACATTG+AGG + chr4_1:65247985-65248004 Msa0564580:intron 30.0%
!! TTGCTATTTCGATACATTGA+GGG + chr4_1:65247986-65248005 Msa0564580:intron 30.0%
AGATACATTACCAACAAAAC+GGG - chr4_1:65248060-65248079 None:intergenic 30.0%
ATTGCATTTGGTATTTGAAC+AGG + chr4_1:65248242-65248261 Msa0564580:intron 30.0%
ATCATATCAGTTGCTTCAAT+TGG + chr4_1:65248343-65248362 Msa0564580:CDS 30.0%
TCATATCAGTTGCTTCAATT+GGG + chr4_1:65248344-65248363 Msa0564580:CDS 30.0%
AGCTACAACAAGAAATTCAA+TGG + chr4_1:65248399-65248418 Msa0564580:CDS 30.0%
AAGAAATTCAATGGTTGTGT+TGG + chr4_1:65248408-65248427 Msa0564580:CDS 30.0%
ATACACACACATAACAAAGT+TGG - chr4_1:65248532-65248551 None:intergenic 30.0%
!!! AAAGCCGTTACTTGTTTTAT+TGG + chr4_1:65248573-65248592 Msa0564580:three_prime_UTR 30.0%
TATAGCAAGATGTTAGCATT+AGG - chr4_1:65248685-65248704 None:intergenic 30.0%
TATTCTTTGTTGGATGAATG+AGG + chr4_1:65248814-65248833 Msa0564580:three_prime_UTR 30.0%
ATTCTTTGTTGGATGAATGA+GGG + chr4_1:65248815-65248834 Msa0564580:three_prime_UTR 30.0%
CTTAGGGATAATGAAACTAG+AGG - chr4_1:65243755-65243774 None:intergenic 35.0%
ATATGTGGTTCAAGTGCTAT+TGG - chr4_1:65243882-65243901 None:intergenic 35.0%
TCAACACTTCCATTAATTCG+TGG + chr4_1:65243942-65243961 Msa0564580:CDS 35.0%
CAACACTTCCATTAATTCGT+GGG + chr4_1:65243943-65243962 Msa0564580:CDS 35.0%
CTACTACTGGAATCTGTTAA+TGG - chr4_1:65244011-65244030 None:intergenic 35.0%
! TCTGAACTTGTTTCATCTTC+AGG - chr4_1:65244056-65244075 None:intergenic 35.0%
CAAGTTCAGAGAAATTTGAC+TGG + chr4_1:65244066-65244085 Msa0564580:CDS 35.0%
AGATCACATATTGGCATCAA+AGG - chr4_1:65244107-65244126 None:intergenic 35.0%
TGGGGATTGATGTTGTTATA+TGG + chr4_1:65244159-65244178 Msa0564580:CDS 35.0%
GGATTGATGTTGTTATATGG+TGG + chr4_1:65244162-65244181 Msa0564580:CDS 35.0%
TGAAGGAAGGATTGATCAAT+GGG + chr4_1:65244250-65244269 Msa0564580:CDS 35.0%
!! CAAATAACTCAGGGTATTGT+AGG + chr4_1:65244507-65244526 Msa0564580:intron 35.0%
TTCTTTCCTTGTGTAGCTAA+TGG + chr4_1:65244680-65244699 Msa0564580:intron 35.0%
TTCTATCCATTAGCTACACA+AGG - chr4_1:65244689-65244708 None:intergenic 35.0%
CTGAATGTAACTACATGTGT+CGG + chr4_1:65244791-65244810 Msa0564580:intron 35.0%
TGAATGTAACTACATGTGTC+GGG + chr4_1:65244792-65244811 Msa0564580:intron 35.0%
!! TCAATTTCTGGTATGAATGG+GGG - chr4_1:65245166-65245185 None:intergenic 35.0%
GGAAACAGAGATATTGCTTA+TGG + chr4_1:65245211-65245230 Msa0564580:CDS 35.0%
AACATGCAAGTTACGATCAT+GGG - chr4_1:65245470-65245489 None:intergenic 35.0%
TAACATGCAAGTTACGATCA+TGG - chr4_1:65245471-65245490 None:intergenic 35.0%
CATACTACATATGCACACTA+CGG + chr4_1:65245819-65245838 Msa0564580:CDS 35.0%
ATGAACACTCCAAAACCAAA+AGG + chr4_1:65245846-65245865 Msa0564580:CDS 35.0%
CATCTAACTCTTCAATTGAC+AGG - chr4_1:65245990-65246009 None:intergenic 35.0%
AATGGTTTCACAGCAAATCA+GGG + chr4_1:65246012-65246031 Msa0564580:CDS 35.0%
TATGCATAAAAGATGCTTGG+TGG - chr4_1:65246060-65246079 None:intergenic 35.0%
! TCAGAAGGTGCAAGTTTATT+TGG - chr4_1:65246090-65246109 None:intergenic 35.0%
GTTACCTTAGTTTCATCAGA+AGG - chr4_1:65246105-65246124 None:intergenic 35.0%
ATTTGTATTCCTGTTAGTCC+CGG + chr4_1:65246247-65246266 Msa0564580:CDS 35.0%
CTAACATGAAAAATCCATCG+CGG - chr4_1:65246334-65246353 None:intergenic 35.0%
GATTGAACCAACAAATCAAC+AGG - chr4_1:65246435-65246454 None:intergenic 35.0%
CCAAGACTAAGAAAAATGGA+TGG - chr4_1:65246813-65246832 None:intergenic 35.0%
!! CCATCCATTTTTCTTAGTCT+TGG + chr4_1:65246810-65246829 Msa0564580:intron 35.0%
TCACCCAAGACTAAGAAAAA+TGG - chr4_1:65246817-65246836 None:intergenic 35.0%
!!! GTGAGCAATAGTACTTTTTC+AGG + chr4_1:65246833-65246852 Msa0564580:intron 35.0%
!! TCGTGTTTCCTACCTTATTT+TGG + chr4_1:65246875-65246894 Msa0564580:intron 35.0%
CAATTCGACCAAAATAAGGT+AGG - chr4_1:65246886-65246905 None:intergenic 35.0%
GAATGGAGAGGAAAATATAG+TGG + chr4_1:65247125-65247144 Msa0564580:CDS 35.0%
! TCGCTAGTGCATATCTATTT+TGG + chr4_1:65247360-65247379 Msa0564580:intron 35.0%
! TGTCGTCAATTTTGTATAGC+TGG + chr4_1:65247470-65247489 Msa0564580:intron 35.0%
!!! ATGTTTTAGTTTTGTTGGGG+GGG + chr4_1:65247662-65247681 Msa0564580:intron 35.0%
ACTAACAAAGTGGACAATCA+GGG - chr4_1:65247764-65247783 None:intergenic 35.0%
ACTAACAAAGTGCACAATCA+AGG + chr4_1:65247957-65247976 Msa0564580:intron 35.0%
GATACATTACCAACAAAACG+GGG - chr4_1:65248059-65248078 None:intergenic 35.0%
TTTGGTATTTGAACAGGTAC+TGG + chr4_1:65248248-65248267 Msa0564580:intron 35.0%
AACTCTTACAATTCACCGTA+TGG - chr4_1:65248276-65248295 None:intergenic 35.0%
TGGAGATTAATTTCAGCGAA+AGG - chr4_1:65248512-65248531 None:intergenic 35.0%
! AATTGTTTTCCCTTCTGTTG+TGG + chr4_1:65248707-65248726 Msa0564580:three_prime_UTR 35.0%
GATAATGAAACTAGAGGCTC+AGG - chr4_1:65243749-65243768 None:intergenic 40.0%
TTGTTCCATTACTTCGCAGA+AGG + chr4_1:65243814-65243833 Msa0564580:five_prime_UTR 40.0%
TGTTCCATTACTTCGCAGAA+GGG + chr4_1:65243815-65243834 Msa0564580:five_prime_UTR 40.0%
! GAAGTGTTCCCACGAATTAA+TGG - chr4_1:65243954-65243973 None:intergenic 40.0%
TGTTAATGGAGAAGGTGACA+AGG - chr4_1:65243997-65244016 None:intergenic 40.0%
CTGGAATCTGTTAATGGAGA+AGG - chr4_1:65244005-65244024 None:intergenic 40.0%
AATTTGACTGGTACTCACAG+TGG + chr4_1:65244078-65244097 Msa0564580:CDS 40.0%
ACCTCATGCTAAGAAAGTGA+TGG + chr4_1:65244139-65244158 Msa0564580:CDS 40.0%
CCTCATGCTAAGAAAGTGAT+GGG + chr4_1:65244140-65244159 Msa0564580:CDS 40.0%
CTCATGCTAAGAAAGTGATG+GGG + chr4_1:65244141-65244160 Msa0564580:CDS 40.0%
GGGATAGAAATGAGAATGCA+TGG + chr4_1:65244183-65244202 Msa0564580:CDS 40.0%
!! GACAAAGGTGCTAATCTATG+AGG - chr4_1:65244230-65244249 None:intergenic 40.0%
AGATTAGCACCTTTGTCTGA+AGG + chr4_1:65244233-65244252 Msa0564580:CDS 40.0%
TCAATCCTTCCTTCAGACAA+AGG - chr4_1:65244245-65244264 None:intergenic 40.0%
CTGAAGGAAGGATTGATCAA+TGG + chr4_1:65244249-65244268 Msa0564580:CDS 40.0%
GAAGGAAGGATTGATCAATG+GGG + chr4_1:65244251-65244270 Msa0564580:CDS 40.0%
AGGTTACAGTGTGTGTATCA+TGG + chr4_1:65244275-65244294 Msa0564580:CDS 40.0%
TACAGTGTGTGTATCATGGT+TGG + chr4_1:65244279-65244298 Msa0564580:CDS 40.0%
!!! GGTTGGTGTTTTAATGGATC+AGG + chr4_1:65244296-65244315 Msa0564580:CDS 40.0%
TGATTGCAAGTTCATTCCTC+AGG + chr4_1:65244319-65244338 Msa0564580:CDS 40.0%
CAGCATGTAAGTGTCAGTAT+TGG - chr4_1:65244741-65244760 None:intergenic 40.0%
GAATGTAACTACATGTGTCG+GGG + chr4_1:65244793-65244812 Msa0564580:intron 40.0%
!! TAGCACCGACACTTCAAATA+TGG - chr4_1:65244845-65244864 None:intergenic 40.0%
TACCATTCTGCACAGTACTT+GGG - chr4_1:65245084-65245103 None:intergenic 40.0%
ATACCATTCTGCACAGTACT+TGG - chr4_1:65245085-65245104 None:intergenic 40.0%
! AGAATGGTATCGTGTGGTTT+TGG + chr4_1:65245095-65245114 Msa0564580:CDS 40.0%
AAGGACGGATCATCAATTTC+TGG - chr4_1:65245178-65245197 None:intergenic 40.0%
GTTTCCCATTACGCTAGTAA+AGG - chr4_1:65245197-65245216 None:intergenic 40.0%
CTCCACATTTGACAAAAGCA+TGG + chr4_1:65245584-65245603 Msa0564580:intron 40.0%
! CACCATGCTTTTGTCAAATG+TGG - chr4_1:65245589-65245608 None:intergenic 40.0%
! GGTTCTGATTGAAAACCTCA+TGG + chr4_1:65245788-65245807 Msa0564580:CDS 40.0%
GTGCATATGTAGTATGTGCA+GGG - chr4_1:65245815-65245834 None:intergenic 40.0%
TGTGCATATGTAGTATGTGC+AGG - chr4_1:65245816-65245835 None:intergenic 40.0%
ACAGTGAAAGCTGATAGAGA+AGG + chr4_1:65245949-65245968 Msa0564580:intron 40.0%
TCTTCAATTGACAGGTCAAG+TGG - chr4_1:65245982-65246001 None:intergenic 40.0%
CAATGGTTTCACAGCAAATC+AGG + chr4_1:65246011-65246030 Msa0564580:CDS 40.0%
TGCACCTTCTGATGAAACTA+AGG + chr4_1:65246098-65246117 Msa0564580:CDS 40.0%
TTGACAAAATTGTACCGCGA+TGG + chr4_1:65246317-65246336 Msa0564580:CDS 40.0%
TACGTATCTTCTCCATGTTG+AGG + chr4_1:65246378-65246397 Msa0564580:CDS 40.0%
!! CATTGGTCCTGTTGATTTGT+TGG + chr4_1:65246425-65246444 Msa0564580:intron 40.0%
TTATGTGCACAATAGCTGCT+AGG + chr4_1:65246645-65246664 Msa0564580:intron 40.0%
AAACATTGCCTTCTGCCAAT+TGG - chr4_1:65247033-65247052 None:intergenic 40.0%
!! ATGCAGGTGATCAAGTTGAA+TGG + chr4_1:65247108-65247127 Msa0564580:CDS 40.0%
CTGTCCATAAGTTGTTCTCT+GGG - chr4_1:65247170-65247189 None:intergenic 40.0%
GAATCACTACCTAGTGTAGT+CGG + chr4_1:65247439-65247458 Msa0564580:intron 40.0%
AAAAAGAAGCCGACTACACT+AGG - chr4_1:65247451-65247470 None:intergenic 40.0%
! GACTACTTGCTACACATTCA+GGG - chr4_1:65247704-65247723 None:intergenic 40.0%
! TGACTACTTGCTACACATTC+AGG - chr4_1:65247705-65247724 None:intergenic 40.0%
! TGGACAATCAGGGACTATTT+TGG - chr4_1:65247754-65247773 None:intergenic 40.0%
GACTAACAAAGTGGACAATC+AGG - chr4_1:65247765-65247784 None:intergenic 40.0%
TTCGATACATTGAGGGACTA+TGG + chr4_1:65247993-65248012 Msa0564580:intron 40.0%
GACTACTTGTCACTCATTCA+AGG + chr4_1:65248017-65248036 Msa0564580:intron 40.0%
AAACGGGGAAATAGTCACTT+TGG - chr4_1:65248044-65248063 None:intergenic 40.0%
! TGACTATTTCCCCGTTTTGT+TGG + chr4_1:65248047-65248066 Msa0564580:intron 40.0%
AGCCTATAAGAGTCTCAATG+TGG + chr4_1:65248303-65248322 Msa0564580:CDS 40.0%
CACCACATTGAGACTCTTAT+AGG - chr4_1:65248308-65248327 None:intergenic 40.0%
CTATAAGAGTCTCAATGTGG+TGG + chr4_1:65248306-65248325 Msa0564580:CDS 40.0%
ATTGTTGCCACAATGAAGCA+GGG + chr4_1:65248367-65248386 Msa0564580:CDS 40.0%
ATTAATTTCAGCGAAAGGCG+TGG - chr4_1:65248507-65248526 None:intergenic 40.0%
TCACATGTTCCACAACAGAA+GGG - chr4_1:65248719-65248738 None:intergenic 40.0%
TTCACATGTTCCACAACAGA+AGG - chr4_1:65248720-65248739 None:intergenic 40.0%
TTCTGTTGTGGAACATGTGA+AGG + chr4_1:65248719-65248738 Msa0564580:three_prime_UTR 40.0%
TCTGTTGTGGAACATGTGAA+GGG + chr4_1:65248720-65248739 Msa0564580:three_prime_UTR 40.0%
!! GGGATGTATGTTGCTTTGTT+TGG + chr4_1:65248741-65248760 Msa0564580:three_prime_UTR 40.0%
TTGGAGAAATCATGCAGATG+AGG + chr4_1:65248760-65248779 Msa0564580:three_prime_UTR 40.0%
TGTTCCCTTCTGCGAAGTAA+TGG - chr4_1:65243822-65243841 None:intergenic 45.0%
TCGCAGAAGGGAACAAACAA+TGG + chr4_1:65243827-65243846 Msa0564580:exon 45.0%
CACGTGAAGGTTACTACTAC+TGG - chr4_1:65244024-65244043 None:intergenic 45.0%
CAGTAGTAGTAACCTTCACG+TGG + chr4_1:65244022-65244041 Msa0564580:CDS 45.0%
CCCATCACTTTCTTAGCATG+AGG - chr4_1:65244143-65244162 None:intergenic 45.0%
AGGTGCTAATCTATGAGGAC+AGG - chr4_1:65244225-65244244 None:intergenic 45.0%
TAGCACCTTTGTCTGAAGGA+AGG + chr4_1:65244237-65244256 Msa0564580:CDS 45.0%
GAAGGATTGATCAATGGGGT+AGG + chr4_1:65244255-65244274 Msa0564580:CDS 45.0%
GTCTTCAAAAGCGACTCGAA+GGG - chr4_1:65244374-65244393 None:intergenic 45.0%
TGTCTTCAAAAGCGACTCGA+AGG - chr4_1:65244375-65244394 None:intergenic 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG - chr4_1:65244712-65244731 None:intergenic 45.0%
!!! AGCAGCTACACACGCTTTTT+TGG - chr4_1:65245059-65245078 None:intergenic 45.0%
! TACCCAAGTACTGTGCAGAA+TGG + chr4_1:65245079-65245098 Msa0564580:CDS 45.0%
TCCGTCCTTTACTAGCGTAA+TGG + chr4_1:65245189-65245208 Msa0564580:CDS 45.0%
CCCATTACGCTAGTAAAGGA+CGG - chr4_1:65245193-65245212 None:intergenic 45.0%
CCGTCCTTTACTAGCGTAAT+GGG + chr4_1:65245190-65245209 Msa0564580:CDS 45.0%
GTGAAAGCTGATAGAGAAGG+AGG + chr4_1:65245952-65245971 Msa0564580:intron 45.0%
GTTTCACAGCAAATCAGGGT+TGG + chr4_1:65246016-65246035 Msa0564580:CDS 45.0%
TGGTGCTTCCCAAGAAACTT+TGG + chr4_1:65246286-65246305 Msa0564580:CDS 45.0%
GGTGCTTCCCAAGAAACTTT+GGG + chr4_1:65246287-65246306 Msa0564580:CDS 45.0%
TCCACAGCCCAAAGTTTCTT+GGG - chr4_1:65246297-65246316 None:intergenic 45.0%
ATCCACAGCCCAAAGTTTCT+TGG - chr4_1:65246298-65246317 None:intergenic 45.0%
TGGATGTTGGTCAAGCCAAT+TGG + chr4_1:65247015-65247034 Msa0564580:CDS 45.0%
GGCAATGTTTGTGCCAACAA+AGG + chr4_1:65247043-65247062 Msa0564580:CDS 45.0%
!! ACAAGAGCATCTGCCTTTGT+TGG - chr4_1:65247059-65247078 None:intergenic 45.0%
AAGGCAGATGCTCTTGTGAT+TGG + chr4_1:65247062-65247081 Msa0564580:CDS 45.0%
!! GGTGATCAAGTTGAATGGAG+AGG + chr4_1:65247113-65247132 Msa0564580:CDS 45.0%
ACCTCCCAGAGAACAACTTA+TGG + chr4_1:65247163-65247182 Msa0564580:CDS 45.0%
TCCATAAGTTGTTCTCTGGG+AGG - chr4_1:65247167-65247186 None:intergenic 45.0%
CCTGTCCATAAGTTGTTCTC+TGG - chr4_1:65247171-65247190 None:intergenic 45.0%
CCAGAGAACAACTTATGGAC+AGG + chr4_1:65247168-65247187 Msa0564580:CDS 45.0%
AAACAGGTAAAAGGGCAACC+CGG - chr4_1:65247632-65247651 None:intergenic 45.0%
GATTGTTGCCACAATGAAGC+AGG + chr4_1:65248366-65248385 Msa0564580:CDS 45.0%
TGCTTTCATTCGCGTTGTCA+CGG + chr4_1:65248434-65248453 Msa0564580:CDS 45.0%
CGTGGTTGTAGTCATGGTAA+CGG - chr4_1:65248489-65248508 None:intergenic 45.0%
! TTGGTACTTAAGAGGAGCGT+TGG + chr4_1:65248592-65248611 Msa0564580:three_prime_UTR 45.0%
CTGTTGTGGAACATGTGAAG+GGG + chr4_1:65248721-65248740 Msa0564580:three_prime_UTR 45.0%
!!! AAAATATTGATTTTTTTAAT+GGG - chr4_1:65243905-65243924 None:intergenic 5.0%
!!! ATTAAAAAAATCAATATTTT+CGG + chr4_1:65243905-65243924 Msa0564580:CDS 5.0%
!!! AAAGTTTTTTTTTTAATAAA+AGG - chr4_1:65246782-65246801 None:intergenic 5.0%
!! ATTAAAAAAAAAACTTTAAT+AGG + chr4_1:65246785-65246804 Msa0564580:intron 5.0%
!! ATCAAAATAAATAATTAAAA+GGG - chr4_1:65246980-65246999 None:intergenic 5.0%
!! TATCAAAATAAATAATTAAA+AGG - chr4_1:65246981-65247000 None:intergenic 5.0%
!!! TTTTAATTATTTATTTTGAT+AGG + chr4_1:65246980-65246999 Msa0564580:intron 5.0%
CAGGTTCATCATCCACGTGA+AGG - chr4_1:65244037-65244056 None:intergenic 50.0%
GACTCGAAGGGAGTAGTTAC+CGG - chr4_1:65244362-65244381 None:intergenic 50.0%
CTGTGCAGAATGGTATCGTG+TGG + chr4_1:65245089-65245108 Msa0564580:CDS 50.0%
TAGTATGTGCAGGGTCCATG+AGG - chr4_1:65245806-65245825 None:intergenic 50.0%
CAAATCAGTCTGCTGTTGCC+GGG - chr4_1:65246268-65246287 None:intergenic 50.0%
CCAAATCAGTCTGCTGTTGC+CGG - chr4_1:65246269-65246288 None:intergenic 50.0%
TCCCAAGAAACTTTGGGCTG+TGG + chr4_1:65246293-65246312 Msa0564580:CDS 50.0%
GTGCACAATAGCTGCTAGGT+TGG + chr4_1:65246649-65246668 Msa0564580:intron 50.0%
TGGTCAAGCCAATTGGCAGA+AGG + chr4_1:65247022-65247041 Msa0564580:CDS 50.0%
! AGTTGTTCTCTGGGAGGTGT+AGG - chr4_1:65247161-65247180 None:intergenic 50.0%
TGGGGGGGTAATAGTCACTT+TGG + chr4_1:65247677-65247696 Msa0564580:intron 50.0%
!! GAACAGGTACTGGAGCCATA+CGG + chr4_1:65248258-65248277 Msa0564580:intron 50.0%
AACCACACCCTGCTTCATTG+TGG - chr4_1:65248377-65248396 None:intergenic 50.0%
TTTCATTCGCGTTGTCACGG+TGG + chr4_1:65248437-65248456 Msa0564580:CDS 50.0%
! GAAAGGCGTGGTTGTAGTCA+TGG - chr4_1:65248495-65248514 None:intergenic 50.0%
!! GGAGCGTTGGAACATTTGTG+TGG + chr4_1:65248605-65248624 Msa0564580:three_prime_UTR 50.0%
ATTCCTCAGGCACCTCCTGA+AGG + chr4_1:65244332-65244351 Msa0564580:CDS 55.0%
GTAGTTACCGGAGGTCCTTC+AGG - chr4_1:65244350-65244369 None:intergenic 55.0%
TCGAAGGGAGTAGTTACCGG+AGG - chr4_1:65244359-65244378 None:intergenic 55.0%
CCGGCAACAGCAGACTGATT+TGG + chr4_1:65246266-65246285 Msa0564580:CDS 55.0%
! TCTGGGAGGTGTAGGAGGAA+GGG - chr4_1:65247153-65247172 None:intergenic 55.0%
! TGTTCTCTGGGAGGTGTAGG+AGG - chr4_1:65247158-65247177 None:intergenic 55.0%
CACTGAAGCTCGCATACGCA+GGG - chr4_1:65247607-65247626 None:intergenic 55.0%
GTATGCGAGCTTCAGTGCAC+CGG + chr4_1:65247610-65247629 Msa0564580:intron 55.0%
TATGCGAGCTTCAGTGCACC+GGG + chr4_1:65247611-65247630 Msa0564580:intron 55.0%
TGCCACAATGAAGCAGGGTG+TGG + chr4_1:65248372-65248391 Msa0564580:CDS 55.0%
GTTACCGGAGGTCCTTCAGG+AGG - chr4_1:65244347-65244366 None:intergenic 60.0%
CTGCTGTTGCCGGGACTAAC+AGG - chr4_1:65246259-65246278 None:intergenic 60.0%
! CTCTGGGAGGTGTAGGAGGA+AGG - chr4_1:65247154-65247173 None:intergenic 60.0%
AAGCTCGCATACGCAGGGTC+CGG - chr4_1:65247602-65247621 None:intergenic 60.0%
GCACTGAAGCTCGCATACGC+AGG - chr4_1:65247608-65247627 None:intergenic 60.0%
!! GGTCCTTCAGGAGGTGCCTG+AGG - chr4_1:65244338-65244357 None:intergenic 65.0%
GGCACCTCCTGAAGGACCTC+CGG + chr4_1:65244340-65244359 Msa0564580:CDS 65.0%
AGCTCGCATACGCAGGGTCC+GGG - chr4_1:65247601-65247620 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 65243739 65248850 65243739 ID=Msa0564580;Name=Msa0564580
chr4_1 mRNA 65243739 65248850 65243739 ID=Msa0564580-mRNA-1;Parent=Msa0564580;Name=Msa0564580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=107|1|1|1|1|1|7|331|529
chr4_1 exon 65243739 65244361 65243739 ID=Msa0564580-mRNA-1:exon:20971;Parent=Msa0564580-mRNA-1
chr4_1 exon 65245046 65245233 65245046 ID=Msa0564580-mRNA-1:exon:20972;Parent=Msa0564580-mRNA-1
chr4_1 exon 65245782 65245867 65245782 ID=Msa0564580-mRNA-1:exon:20973;Parent=Msa0564580-mRNA-1
chr4_1 exon 65245953 65246119 65245953 ID=Msa0564580-mRNA-1:exon:20974;Parent=Msa0564580-mRNA-1
chr4_1 exon 65246211 65246399 65246211 ID=Msa0564580-mRNA-1:exon:20975;Parent=Msa0564580-mRNA-1
chr4_1 exon 65247002 65247189 65247002 ID=Msa0564580-mRNA-1:exon:20976;Parent=Msa0564580-mRNA-1
chr4_1 exon 65248264 65248850 65248264 ID=Msa0564580-mRNA-1:exon:20977;Parent=Msa0564580-mRNA-1
chr4_1 five_prime_UTR 65243739 65243845 65243739 ID=Msa0564580-mRNA-1:five_prime_utr;Parent=Msa0564580-mRNA-1
chr4_1 CDS 65243846 65244361 65243846 ID=Msa0564580-mRNA-1:cds;Parent=Msa0564580-mRNA-1
chr4_1 CDS 65245046 65245233 65245046 ID=Msa0564580-mRNA-1:cds;Parent=Msa0564580-mRNA-1
chr4_1 CDS 65245782 65245867 65245782 ID=Msa0564580-mRNA-1:cds;Parent=Msa0564580-mRNA-1
chr4_1 CDS 65245953 65246119 65245953 ID=Msa0564580-mRNA-1:cds;Parent=Msa0564580-mRNA-1
chr4_1 CDS 65246211 65246399 65246211 ID=Msa0564580-mRNA-1:cds;Parent=Msa0564580-mRNA-1
chr4_1 CDS 65247002 65247189 65247002 ID=Msa0564580-mRNA-1:cds;Parent=Msa0564580-mRNA-1
chr4_1 CDS 65248264 65248519 65248264 ID=Msa0564580-mRNA-1:cds;Parent=Msa0564580-mRNA-1
chr4_1 three_prime_UTR 65248520 65248850 65248520 ID=Msa0564580-mRNA-1:three_prime_utr;Parent=Msa0564580-mRNA-1
Gene Sequence

>Msa0564580

ATGGAAGCTTTTTCTGTTAGTTCACTTCACATACCAATAGCACTTGAACCACATATCCCATTAAAAAAATCAATATTTTCGGACTCACAATTGCATTCAACACTTCCATTAATTCGTGGGAACACTTCAAAATTCAAGCTTTTCACTGCCTTGTCACCTTCTCCATTAACAGATTCCAGTAGTAGTAACCTTCACGTGGATGATGAACCTGAAGATGAAACAAGTTCAGAGAAATTTGACTGGTACTCACAGTGGTATCCTTTGATGCCAATATGTGATCTTGACAAAAGAGCACCTCATGCTAAGAAAGTGATGGGGATTGATGTTGTTATATGGTGGGATAGAAATGAGAATGCATGGCAAGTTTTTGATGATGCCTGTCCTCATAGATTAGCACCTTTGTCTGAAGGAAGGATTGATCAATGGGGTAGGTTACAGTGTGTGTATCATGGTTGGTGTTTTAATGGATCAGGTGATTGCAAGTTCATTCCTCAGGCACCTCCTGAAGGACCTCCGATTCATACGTCCAAAAAAGCGTGTGTAGCTGCTTACCCAAGTACTGTGCAGAATGGTATCGTGTGGTTTTGGCCAAATACTGATCCTCAATACAAAGATATTATTACAAGGAAAACACCCCCATTCATACCAGAAATTGATGATCCGTCCTTTACTAGCGTAATGGGAAACAGAGATATTGCTTATGGGTATGAGGTTCTGATTGAAAACCTCATGGACCCTGCACATACTACATATGCACACTACGGAATAATGAACACTCCAAAACCAAAAGTGAAAGCTGATAGAGAAGGAGGAAGACCACTTGACCTGTCAATTGAAGAGTTAGATGTCAATGGTTTCACAGCAAATCAGGGTTGGAGCAAAAGCAAGTTTATGCCACCAAGCATCTTTTATGCATATACTGATCCAAATAAACTTGCACCTTCTGATGAAACTAAGAATTCATCAGTTCAGAAGAAATTTGCTTTGGTCTTTATTTGTATTCCTGTTAGTCCCGGCAACAGCAGACTGATTTGGTGCTTCCCAAGAAACTTTGGGCTGTGGATTGACAAAATTGTACCGCGATGGATTTTTCATGTTAGACAAAACTTGGTTCTAGATTCAGATACGTATCTTCTCCATGTTGAGGAAAAAAAAATAATGGATGTTGGTCAAGCCAATTGGCAGAAGGCAATGTTTGTGCCAACAAAGGCAGATGCTCTTGTGATTGGTTTTAGAAAATGGTTAAAGAAGTATGCAGGTGATCAAGTTGAATGGAGAGGAAAATATAGTGGAGCCCTTCCTCCTACACCTCCCAGAGAACAACTTATGGACAGGTACTGGAGCCATACGGTGAATTGTAAGAGTTGCAATTTAGCCTATAAGAGTCTCAATGTGGTGGAAGTGATGCTGCAGATCATATCAGTTGCTTCAATTGGGATTGTTGCCACAATGAAGCAGGGTGTGGTTTCAGCTACAACAAGAAATTCAATGGTTGTGTTGGCAGTGCTTTCATTCGCGTTGTCACGGTGGTTAGCTCACTTCATATACAAAAACTTCCGTTACCATGACTACAACCACGCCTTTCGCTGA

Protein sequence

>Msa0564580

MEAFSVSSLHIPIALEPHIPLKKSIFSDSQLHSTLPLIRGNTSKFKLFTALSPSPLTDSSSSNLHVDDEPEDETSSEKFDWYSQWYPLMPICDLDKRAPHAKKVMGIDVVIWWDRNENAWQVFDDACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPIHTSKKACVAAYPSTVQNGIVWFWPNTDPQYKDIITRKTPPFIPEIDDPSFTSVMGNRDIAYGYEVLIENLMDPAHTTYAHYGIMNTPKPKVKADREGGRPLDLSIEELDVNGFTANQGWSKSKFMPPSIFYAYTDPNKLAPSDETKNSSVQKKFALVFICIPVSPGNSRLIWCFPRNFGLWIDKIVPRWIFHVRQNLVLDSDTYLLHVEEKKIMDVGQANWQKAMFVPTKADALVIGFRKWLKKYAGDQVEWRGKYSGALPPTPPREQLMDRYWSHTVNCKSCNLAYKSLNVVEVMLQIISVASIGIVATMKQGVVSATTRNSMVVLAVLSFALSRWLAHFIYKNFRYHDYNHAFR*