AlfalfaGEDB | MS.gene88768

M. sativa cultivar XinJiangDaYe / MS.gene88768

KEGG: -
GO: -
PFAM: PF11493.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88768.t1	XP_003615604.1	100	62	0	0	1	62	1	62	4.00E-26	127.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88768.t1	G7K6C4	100.0	62	0	0	1	62	1	62	2.9e-26	127.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene88768	0.852404	4.72E-61	-1.69E-46
MS.gene049151	MS.gene88768	0.827098	1.89E-54	-1.69E-46
MS.gene049153	MS.gene88768	0.860375	2.16E-63	-1.69E-46
MS.gene049170	MS.gene88768	0.822914	1.84E-53	-1.69E-46
MS.gene049346	MS.gene88768	0.827361	1.63E-54	-1.69E-46
MS.gene049351	MS.gene88768	0.812451	4.21E-51	-1.69E-46
MS.gene049356	MS.gene88768	0.89239	1.66E-74	-1.69E-46
MS.gene049369	MS.gene88768	0.837381	5.38E-57	-1.69E-46
MS.gene049389	MS.gene88768	0.81461	1.41E-51	-1.69E-46
MS.gene049488	MS.gene88768	0.812572	3.96E-51	-1.69E-46

Showing 1 to 10 of 204 entries

Previous1 2 3 4 5…21Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88768.t1	MTR_5g069990	86.000	100	2	1	1	100	1	88	3.47e-53	162
MS.gene88768.t1	MTR_3g462990	67.692	65	16	3	11	73	10	71	1.55e-20	79.3

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88768.t1	AT3G47070	50.000	64	29	2	1	64	1	61	5.38e-14	63.2

Showing 1 to 1 of 1 entries

Previous1Next

Find 28 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGATCCTATTCTCAAGA+AGG	0.548104	5.4:-54971689	MS.gene88768:CDS
ACAGGTGCAAAGGGTACTAC+AGG	0.544200	5.4:-54971790	MS.gene88768:CDS
ACTAGTAGAGGTACTACTAG+TGG	0.652621	5.4:-54971619	MS.gene88768:CDS
AGAGGCACTACTAGCAGTAA+AGG	0.496778	5.4:-54971646	MS.gene88768:CDS
AGAGGTACTACTAGTGGTAG+AGG	0.535016	5.4:-54971613	MS.gene88768:CDS
AGAGGTACTACTAGTGGTAG+AGG	0.570979	5.4:-54971595	MS.gene88768:CDS
AGTAAAGGCACTACTAGTAG+AGG	0.599998	5.4:-54971631	MS.gene88768:CDS
AGTGGTAGAGGCACTGCTAG+TGG	0.617969	5.4:-54971583	MS.gene88768:CDS
AGTGGTAGAGGTACTACTAG+TGG	0.660105	5.4:-54971601	MS.gene88768:CDS
CAAAAGAAGAAGGGTGGTTT+TGG	0.266622	5.4:-54971537	MS.gene88768:CDS

Showing 1 to 10 of 28 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAGAAGAATAATAGTAG+AGG	-	chr5.4:54971708-54971727	MS.gene88768:CDS	30.0%
AACTGATCCTATTCTCAAGA+AGG	-	chr5.4:54971683-54971702	MS.gene88768:CDS	35.0%
GTAGTTCCACAAAAGAAGAA+GGG	-	chr5.4:54971826-54971845	MS.gene88768:CDS	35.0%
TCTTCAACCTTCTTGAGAAT+AGG	+	chr5.4:54971693-54971712	None:intergenic	35.0%
GGTAGTTCCACAAAAGAAGA+AGG	-	chr5.4:54971825-54971844	MS.gene88768:CDS	40.0%
TTCTATCACCATGTTGCCAA+TGG	-	chr5.4:54971530-54971549	MS.gene88768:CDS	40.0%
CTTCCTGTTGTTGGAACCAT+TGG	+	chr5.4:54971549-54971568	None:intergenic	45.0%
GCAAAGACTCTTCCTGTTGT+TGG	+	chr5.4:54971558-54971577	None:intergenic	45.0%
GTTCCACAAAAGAAGAAGGG+TGG	-	chr5.4:54971829-54971848	MS.gene88768:CDS	45.0%
TGTTGGAACCATTGGCAACA+TGG	+	chr5.4:54971541-54971560	None:intergenic	45.0%

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	54971525	54971869	54971525	ID=MS.gene88768
chr5.4	mRNA	54971525	54971869	54971525	ID=MS.gene88768.t1;Parent=MS.gene88768
chr5.4	exon	54971525	54971869	54971525	ID=MS.gene88768.t1.exon1;Parent=MS.gene88768.t1
chr5.4	CDS	54971525	54971869	54971525	ID=cds.MS.gene88768.t1;Parent=MS.gene88768.t1

Gene Sequence	>MS.gene88768 ATGGCTTCTATCACCATGTTGCCAATGGTTCCAACAACAGGAAGAGTCTTTGCAGCTACAGGTGCAAAGGGTACTACAGGTGGTGGCAGTAGCAAGCAAGAGAAAGGTTTTTGGGATTGGATTGTTGGTGGTTTAACAAAAGAAGATCAGTTCTATGAAACTGATCCTATTCTCAAGAAGGTTGAAGAGAAGAATAATAGTAGAGGCACTACTAGCAGTAAAGGCACTACTAGTAGAGGTACTACTAGTGGTAGAGGTACTACTAGTGGTAGAGGCACTGCTAGTGGTGGCAAGAACTCTGGTAGTTCCACAAAAGAAGAAGGGTGGTTTTGGAGGATTTTTTAA
Protein sequence	>MS.gene88768.t1 MASITMLPMVPTTGRVFAATGAKGTTGGGSSKQEKGFWDWIVGGLTKEDQFYETDPILKKVEEKNNSRGTTSSKGTTSRGTTSGRGTTSGRGTASGGKNSGSSTKEEGWFWRIF