Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88768.t1 | XP_003615604.1 | 100 | 62 | 0 | 0 | 1 | 62 | 1 | 62 | 4.00E-26 | 127.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88768.t1 | G7K6C4 | 100.0 | 62 | 0 | 0 | 1 | 62 | 1 | 62 | 2.9e-26 | 127.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene88768 | 0.852404 | 4.72E-61 | -1.69E-46 |
| MS.gene049151 | MS.gene88768 | 0.827098 | 1.89E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene88768 | 0.860375 | 2.16E-63 | -1.69E-46 |
| MS.gene049170 | MS.gene88768 | 0.822914 | 1.84E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene88768 | 0.827361 | 1.63E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene88768 | 0.812451 | 4.21E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene88768 | 0.89239 | 1.66E-74 | -1.69E-46 |
| MS.gene049369 | MS.gene88768 | 0.837381 | 5.38E-57 | -1.69E-46 |
| MS.gene049389 | MS.gene88768 | 0.81461 | 1.41E-51 | -1.69E-46 |
| MS.gene049488 | MS.gene88768 | 0.812572 | 3.96E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene88768 | 0.832303 | 1.02E-55 | -1.69E-46 |
| MS.gene049661 | MS.gene88768 | 0.818815 | 1.61E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene88768 | 0.817811 | 2.72E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene88768 | 0.88367 | 3.69E-71 | -1.69E-46 |
| MS.gene049910 | MS.gene88768 | 0.864861 | 8.97E-65 | -1.69E-46 |
| MS.gene049915 | MS.gene88768 | 0.81339 | 2.62E-51 | -1.69E-46 |
| MS.gene050060 | MS.gene88768 | 0.827983 | 1.16E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene88768 | 0.803397 | 3.56E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene88768 | 0.861552 | 9.47E-64 | -1.69E-46 |
| MS.gene050301 | MS.gene88768 | 0.881524 | 2.23E-70 | -1.69E-46 |
| MS.gene050397 | MS.gene88768 | 0.848672 | 5.28E-60 | -1.69E-46 |
| MS.gene050400 | MS.gene88768 | 0.800347 | 1.50E-48 | -1.69E-46 |
| MS.gene050406 | MS.gene88768 | 0.807495 | 4.92E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene88768 | -0.833384 | 5.50E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene88768 | 0.842319 | 2.78E-58 | -1.69E-46 |
| MS.gene050464 | MS.gene88768 | 0.854036 | 1.61E-61 | -1.69E-46 |
| MS.gene050529 | MS.gene88768 | 0.842973 | 1.86E-58 | -1.69E-46 |
| MS.gene050593 | MS.gene88768 | 0.8048 | 1.82E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene88768 | 0.831473 | 1.64E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene88768 | 0.90119 | 3.44E-78 | -1.69E-46 |
| MS.gene050812 | MS.gene88768 | 0.803111 | 4.07E-49 | -1.69E-46 |
| MS.gene050900 | MS.gene88768 | 0.816954 | 4.24E-52 | -1.69E-46 |
| MS.gene050971 | MS.gene88768 | 0.854624 | 1.09E-61 | -1.69E-46 |
| MS.gene05101 | MS.gene88768 | 0.823423 | 1.40E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene88768 | 0.862349 | 5.40E-64 | -1.69E-46 |
| MS.gene05119 | MS.gene88768 | -0.804852 | 1.77E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene88768 | 0.852359 | 4.86E-61 | -1.69E-46 |
| MS.gene051387 | MS.gene88768 | 0.826053 | 3.35E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene88768 | 0.822594 | 2.18E-53 | -1.69E-46 |
| MS.gene051521 | MS.gene88768 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene88768 | 0.840938 | 6.43E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene88768 | 0.845412 | 4.13E-59 | -1.69E-46 |
| MS.gene051605 | MS.gene88768 | 0.82036 | 7.15E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene88768 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene88768 | 0.847116 | 1.42E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene88768 | 0.857728 | 1.34E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene88768 | -0.83507 | 2.08E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene88768 | 0.883933 | 2.95E-71 | -1.69E-46 |
| MS.gene052078 | MS.gene88768 | 0.838855 | 2.24E-57 | -1.69E-46 |
| MS.gene052135 | MS.gene88768 | 0.820909 | 5.35E-53 | -1.69E-46 |
| MS.gene052136 | MS.gene88768 | 0.813386 | 2.63E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene88768 | 0.827147 | 1.84E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene88768 | 0.927889 | 6.26E-92 | -1.69E-46 |
| MS.gene052253 | MS.gene88768 | 0.87135 | 7.31E-67 | -1.69E-46 |
| MS.gene052255 | MS.gene88768 | 0.821742 | 3.43E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene88768 | 0.880346 | 5.92E-70 | -1.69E-46 |
| MS.gene05233 | MS.gene88768 | -0.800301 | 1.54E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene88768 | 0.914274 | 2.32E-84 | -1.69E-46 |
| MS.gene052414 | MS.gene88768 | 0.813229 | 2.84E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene88768 | 0.82096 | 5.20E-53 | -1.69E-46 |
| MS.gene052481 | MS.gene88768 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene88768 | 0.811155 | 8.07E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene88768 | 0.87153 | 6.37E-67 | -1.69E-46 |
| MS.gene052784 | MS.gene88768 | 0.820726 | 5.89E-53 | -1.69E-46 |
| MS.gene053073 | MS.gene88768 | 0.845159 | 4.83E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene88768 | 0.831239 | 1.87E-55 | -1.69E-46 |
| MS.gene053169 | MS.gene88768 | 0.819391 | 1.19E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene88768 | 0.893224 | 7.67E-75 | -1.69E-46 |
| MS.gene053209 | MS.gene88768 | 0.873243 | 1.71E-67 | -1.69E-46 |
| MS.gene053449 | MS.gene88768 | 0.841709 | 4.03E-58 | -1.69E-46 |
| MS.gene053494 | MS.gene88768 | 0.813132 | 2.99E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene88768 | 0.86219 | 6.04E-64 | -1.69E-46 |
| MS.gene053559 | MS.gene88768 | 0.836173 | 1.09E-56 | -1.69E-46 |
| MS.gene053577 | MS.gene88768 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene88768 | 0.847686 | 9.89E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene88768 | 0.817538 | 3.13E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene88768 | 0.887059 | 1.99E-72 | -1.69E-46 |
| MS.gene053912 | MS.gene88768 | 0.832458 | 9.35E-56 | -1.69E-46 |
| MS.gene053928 | MS.gene88768 | 0.857908 | 1.18E-62 | -1.69E-46 |
| MS.gene054010 | MS.gene88768 | 0.805229 | 1.48E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene88768 | 0.805865 | 1.09E-49 | -1.69E-46 |
| MS.gene054012 | MS.gene88768 | 0.800198 | 1.61E-48 | -1.69E-46 |
| MS.gene054123 | MS.gene88768 | 0.86146 | 1.01E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene88768 | 0.83734 | 5.51E-57 | -1.69E-46 |
| MS.gene054327 | MS.gene88768 | 0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene88768 | 0.874927 | 4.61E-68 | -1.69E-46 |
| MS.gene054473 | MS.gene88768 | 0.821055 | 4.95E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene88768 | 0.849264 | 3.61E-60 | -1.69E-46 |
| MS.gene054719 | MS.gene88768 | 0.809712 | 1.65E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene88768 | 0.867285 | 1.53E-65 | -1.69E-46 |
| MS.gene054955 | MS.gene88768 | 0.817504 | 3.19E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene88768 | 0.807318 | 5.36E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene88768 | 0.802179 | 6.34E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene88768 | 0.896734 | 2.77E-76 | -1.69E-46 |
| MS.gene055277 | MS.gene88768 | 0.862867 | 3.74E-64 | -1.69E-46 |
| MS.gene055369 | MS.gene88768 | 0.826305 | 2.92E-54 | -1.69E-46 |
| MS.gene055390 | MS.gene88768 | 0.831118 | 2.00E-55 | -1.69E-46 |
| MS.gene055412 | MS.gene88768 | 0.810027 | 1.41E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene88768 | 0.866405 | 2.92E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene88768 | 0.834527 | 2.85E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene88768 | 0.809198 | 2.13E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene88768 | 0.882098 | 1.38E-70 | -1.69E-46 |
| MS.gene055604 | MS.gene88768 | 0.835654 | 1.48E-56 | -1.69E-46 |
| MS.gene055666 | MS.gene88768 | 0.856231 | 3.70E-62 | -1.69E-46 |
| MS.gene055712 | MS.gene88768 | 0.812809 | 3.52E-51 | -1.69E-46 |
| MS.gene055859 | MS.gene88768 | 0.837879 | 4.01E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene88768 | 0.802934 | 4.43E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene88768 | 0.808881 | 2.49E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene88768 | 0.834849 | 2.36E-56 | -1.69E-46 |
| MS.gene056233 | MS.gene88768 | 0.836462 | 9.23E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene88768 | 0.883546 | 4.10E-71 | -1.69E-46 |
| MS.gene056410 | MS.gene88768 | 0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene88768 | 0.812646 | 3.82E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene88768 | 0.87689 | 9.74E-69 | -1.69E-46 |
| MS.gene056609 | MS.gene88768 | 0.855959 | 4.44E-62 | -1.69E-46 |
| MS.gene056612 | MS.gene88768 | 0.843306 | 1.52E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene88768 | 0.8995 | 1.86E-77 | -1.69E-46 |
| MS.gene056719 | MS.gene88768 | 0.833997 | 3.87E-56 | -1.69E-46 |
| MS.gene056723 | MS.gene88768 | 0.83968 | 1.37E-57 | -1.69E-46 |
| MS.gene056899 | MS.gene88768 | -0.832578 | 8.73E-56 | -1.69E-46 |
| MS.gene056979 | MS.gene88768 | 0.859054 | 5.39E-63 | -1.69E-46 |
| MS.gene05702 | MS.gene88768 | 0.872422 | 3.22E-67 | -1.69E-46 |
| MS.gene057121 | MS.gene88768 | 0.810087 | 1.37E-50 | -1.69E-46 |
| MS.gene057123 | MS.gene88768 | 0.80164 | 8.18E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene88768 | 0.869253 | 3.56E-66 | -1.69E-46 |
| MS.gene057146 | MS.gene88768 | 0.805336 | 1.40E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene88768 | 0.823222 | 1.56E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene88768 | 0.863692 | 2.08E-64 | -1.69E-46 |
| MS.gene057448 | MS.gene88768 | 0.910807 | 1.24E-82 | -1.69E-46 |
| MS.gene057449 | MS.gene88768 | 0.899426 | 2.01E-77 | -1.69E-46 |
| MS.gene057450 | MS.gene88768 | 0.913659 | 4.76E-84 | -1.69E-46 |
| MS.gene057469 | MS.gene88768 | 0.831544 | 1.57E-55 | -1.69E-46 |
| MS.gene057537 | MS.gene88768 | 0.836378 | 9.69E-57 | -1.69E-46 |
| MS.gene057749 | MS.gene88768 | 0.872374 | 3.34E-67 | -1.69E-46 |
| MS.gene057750 | MS.gene88768 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene88768 | 0.816594 | 5.10E-52 | -1.69E-46 |
| MS.gene057796 | MS.gene88768 | 0.83462 | 2.70E-56 | -1.69E-46 |
| MS.gene057806 | MS.gene88768 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene88768 | 0.869644 | 2.65E-66 | -1.69E-46 |
| MS.gene057825 | MS.gene88768 | 0.826939 | 2.06E-54 | -1.69E-46 |
| MS.gene057927 | MS.gene88768 | 0.848985 | 4.32E-60 | -1.69E-46 |
| MS.gene058002 | MS.gene88768 | 0.892969 | 9.72E-75 | -1.69E-46 |
| MS.gene058007 | MS.gene88768 | 0.8525 | 4.43E-61 | -1.69E-46 |
| MS.gene058082 | MS.gene88768 | 0.845895 | 3.05E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene88768 | 0.87554 | 2.84E-68 | -1.69E-46 |
| MS.gene058142 | MS.gene88768 | 0.863887 | 1.81E-64 | -1.69E-46 |
| MS.gene058233 | MS.gene88768 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene88768 | 0.822079 | 2.87E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene88768 | 0.844181 | 8.86E-59 | -1.69E-46 |
| MS.gene058365 | MS.gene88768 | 0.858246 | 9.40E-63 | -1.69E-46 |
| MS.gene05842 | MS.gene88768 | 0.818667 | 1.74E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene88768 | 0.855826 | 4.86E-62 | -1.69E-46 |
| MS.gene058700 | MS.gene88768 | 0.839028 | 2.02E-57 | -1.69E-46 |
| MS.gene058710 | MS.gene88768 | 0.856997 | 2.20E-62 | -1.69E-46 |
| MS.gene058749 | MS.gene88768 | 0.807874 | 4.08E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene88768 | 0.817345 | 3.46E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene88768 | 0.830469 | 2.89E-55 | -1.69E-46 |
| MS.gene05886 | MS.gene88768 | 0.863679 | 2.10E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene88768 | 0.894686 | 1.95E-75 | -1.69E-46 |
| MS.gene058948 | MS.gene88768 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene88768 | 0.870852 | 1.07E-66 | -1.69E-46 |
| MS.gene059011 | MS.gene88768 | 0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene88768 | 0.898726 | 4.00E-77 | -1.69E-46 |
| MS.gene059082 | MS.gene88768 | 0.804757 | 1.85E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene88768 | 0.809348 | 1.98E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene88768 | 0.891082 | 5.49E-74 | -1.69E-46 |
| MS.gene059294 | MS.gene88768 | 0.835716 | 1.43E-56 | -1.69E-46 |
| MS.gene059366 | MS.gene88768 | 0.89223 | 1.92E-74 | -1.69E-46 |
| MS.gene059420 | MS.gene88768 | 0.880101 | 7.24E-70 | -1.69E-46 |
| MS.gene059462 | MS.gene88768 | 0.822584 | 2.19E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene88768 | 0.835823 | 1.34E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene88768 | 0.884222 | 2.31E-71 | -1.69E-46 |
| MS.gene05959 | MS.gene88768 | 0.84416 | 8.98E-59 | -1.69E-46 |
| MS.gene059674 | MS.gene88768 | 0.833502 | 5.14E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene88768 | 0.89869 | 4.14E-77 | -1.69E-46 |
| MS.gene059688 | MS.gene88768 | 0.899037 | 2.94E-77 | -1.69E-46 |
| MS.gene059692 | MS.gene88768 | 0.899143 | 2.65E-77 | -1.69E-46 |
| MS.gene059695 | MS.gene88768 | 0.89465 | 2.02E-75 | -1.69E-46 |
| MS.gene059708 | MS.gene88768 | 0.844996 | 5.35E-59 | -1.69E-46 |
| MS.gene059711 | MS.gene88768 | 0.848481 | 5.96E-60 | -1.69E-46 |
| MS.gene059788 | MS.gene88768 | 0.804961 | 1.68E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene88768 | 0.877751 | 4.89E-69 | -1.69E-46 |
| MS.gene05984 | MS.gene88768 | 0.887801 | 1.04E-72 | -1.69E-46 |
| MS.gene05986 | MS.gene88768 | 0.801292 | 9.64E-49 | -1.69E-46 |
| MS.gene059876 | MS.gene88768 | 0.807219 | 5.63E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene88768 | 0.892405 | 1.64E-74 | -1.69E-46 |
| MS.gene059899 | MS.gene88768 | 0.835962 | 1.24E-56 | -1.69E-46 |
| MS.gene059974 | MS.gene88768 | 0.806595 | 7.62E-50 | -1.69E-46 |
| MS.gene060247 | MS.gene88768 | 0.852138 | 5.62E-61 | -1.69E-46 |
| MS.gene06037 | MS.gene88768 | 0.848666 | 5.30E-60 | -1.69E-46 |
| MS.gene060403 | MS.gene88768 | 0.85849 | 7.95E-63 | -1.69E-46 |
| MS.gene060407 | MS.gene88768 | 0.853976 | 1.67E-61 | -1.69E-46 |
| MS.gene060495 | MS.gene88768 | 0.871765 | 5.32E-67 | -1.69E-46 |
| MS.gene060496 | MS.gene88768 | 0.838812 | 2.30E-57 | -1.69E-46 |
| MS.gene060569 | MS.gene88768 | 0.805999 | 1.02E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene88768 | 0.814586 | 1.43E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene88768 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene88768 | 0.847235 | 1.31E-59 | -1.69E-46 |
| MS.gene060986 | MS.gene88768 | 0.838767 | 2.37E-57 | -1.69E-46 |
| MS.gene061041 | MS.gene88768 | 0.821121 | 4.78E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene88768 | 0.904751 | 8.84E-80 | -1.69E-46 |
| MS.gene061051 | MS.gene88768 | -0.887151 | 1.84E-72 | -1.69E-46 |
| MS.gene061154 | MS.gene88768 | 0.874146 | 8.48E-68 | -1.69E-46 |
| MS.gene061159 | MS.gene88768 | 0.89329 | 7.21E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88768.t1 | MTR_5g069990 | 86.000 | 100 | 2 | 1 | 1 | 100 | 1 | 88 | 3.47e-53 | 162 |
| MS.gene88768.t1 | MTR_3g462990 | 67.692 | 65 | 16 | 3 | 11 | 73 | 10 | 71 | 1.55e-20 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88768.t1 | AT3G47070 | 50.000 | 64 | 29 | 2 | 1 | 64 | 1 | 61 | 5.38e-14 | 63.2 |
Find 28 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAAGAAGGGTGGTTT+TGG | 0.266622 | 5.4:-54971537 | MS.gene88768:CDS |
| CTTCCTGTTGTTGGAACCAT+TGG | 0.379541 | 5.4:+54971826 | None:intergenic |
| GCAAAGACTCTTCCTGTTGT+TGG | 0.385540 | 5.4:+54971817 | None:intergenic |
| TCTTCAACCTTCTTGAGAAT+AGG | 0.417605 | 5.4:+54971682 | None:intergenic |
| TTGCCAATGGTTCCAACAAC+AGG | 0.422646 | 5.4:-54971829 | MS.gene88768:CDS |
| GGAAGAGTCTTTGCAGCTAC+AGG | 0.461997 | 5.4:-54971808 | MS.gene88768:CDS |
| TTCTATCACCATGTTGCCAA+TGG | 0.469167 | 5.4:-54971842 | MS.gene88768:CDS |
| AGAGGCACTACTAGCAGTAA+AGG | 0.496778 | 5.4:-54971646 | MS.gene88768:CDS |
| GGCAGTAGCAAGCAAGAGAA+AGG | 0.509106 | 5.4:-54971763 | MS.gene88768:CDS |
| GGTAGTTCCACAAAAGAAGA+AGG | 0.520914 | 5.4:-54971547 | MS.gene88768:CDS |
| AGAGGTACTACTAGTGGTAG+AGG | 0.535016 | 5.4:-54971613 | MS.gene88768:CDS |
| ACAGGTGCAAAGGGTACTAC+AGG | 0.544200 | 5.4:-54971790 | MS.gene88768:CDS |
| AACTGATCCTATTCTCAAGA+AGG | 0.548104 | 5.4:-54971689 | MS.gene88768:CDS |
| CTTTGCAGCTACAGGTGCAA+AGG | 0.552868 | 5.4:-54971800 | MS.gene88768:CDS |
| GCTAGTGGTGGCAAGAACTC+TGG | 0.553210 | 5.4:-54971568 | MS.gene88768:CDS |
| TTTGCAGCTACAGGTGCAAA+GGG | 0.555050 | 5.4:-54971799 | MS.gene88768:CDS |
| GCAAAGGGTACTACAGGTGG+TGG | 0.567835 | 5.4:-54971784 | MS.gene88768:CDS |
| AGAGGTACTACTAGTGGTAG+AGG | 0.570979 | 5.4:-54971595 | MS.gene88768:CDS |
| AGTAAAGGCACTACTAGTAG+AGG | 0.599998 | 5.4:-54971631 | MS.gene88768:CDS |
| GAAGAGAAGAATAATAGTAG+AGG | 0.604921 | 5.4:-54971664 | MS.gene88768:CDS |
| TGTTGGAACCATTGGCAACA+TGG | 0.606092 | 5.4:+54971834 | None:intergenic |
| AGTGGTAGAGGCACTGCTAG+TGG | 0.617969 | 5.4:-54971583 | MS.gene88768:CDS |
| GTAGTTCCACAAAAGAAGAA+GGG | 0.642030 | 5.4:-54971546 | MS.gene88768:CDS |
| GTTCCACAAAAGAAGAAGGG+TGG | 0.647995 | 5.4:-54971543 | MS.gene88768:CDS |
| ACTAGTAGAGGTACTACTAG+TGG | 0.652621 | 5.4:-54971619 | MS.gene88768:CDS |
| AGTGGTAGAGGTACTACTAG+TGG | 0.660105 | 5.4:-54971601 | MS.gene88768:CDS |
| GGTAGAGGCACTGCTAGTGG+TGG | 0.662360 | 5.4:-54971580 | MS.gene88768:CDS |
| GGTGCAAAGGGTACTACAGG+TGG | 0.681783 | 5.4:-54971787 | MS.gene88768:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GAAGAGAAGAATAATAGTAG+AGG | - | chr5.4:54971708-54971727 | MS.gene88768:CDS | 30.0% | |
| AACTGATCCTATTCTCAAGA+AGG | - | chr5.4:54971683-54971702 | MS.gene88768:CDS | 35.0% | |
| GTAGTTCCACAAAAGAAGAA+GGG | - | chr5.4:54971826-54971845 | MS.gene88768:CDS | 35.0% | |
| TCTTCAACCTTCTTGAGAAT+AGG | + | chr5.4:54971693-54971712 | None:intergenic | 35.0% | |
| ! | CAAGCAAGAGAAAGGTTTTT+GGG | - | chr5.4:54971617-54971636 | MS.gene88768:CDS | 35.0% |
| !!! | AAGAGAAAGGTTTTTGGGAT+TGG | - | chr5.4:54971622-54971641 | MS.gene88768:CDS | 35.0% |
| GGTAGTTCCACAAAAGAAGA+AGG | - | chr5.4:54971825-54971844 | MS.gene88768:CDS | 40.0% | |
| TTCTATCACCATGTTGCCAA+TGG | - | chr5.4:54971530-54971549 | MS.gene88768:CDS | 40.0% | |
| ! | AAACCACCCTTCTTCTTTTG+TGG | + | chr5.4:54971835-54971854 | None:intergenic | 40.0% |
| ! | CAAAAGAAGAAGGGTGGTTT+TGG | - | chr5.4:54971835-54971854 | MS.gene88768:CDS | 40.0% |
| ! | GCAAGCAAGAGAAAGGTTTT+TGG | - | chr5.4:54971616-54971635 | MS.gene88768:CDS | 40.0% |
| !! | ACTAGTAGAGGTACTACTAG+TGG | - | chr5.4:54971753-54971772 | MS.gene88768:CDS | 40.0% |
| !! | AGTAAAGGCACTACTAGTAG+AGG | - | chr5.4:54971741-54971760 | MS.gene88768:CDS | 40.0% |
| !!! | GGTTTTTGGGATTGGATTGT+TGG | - | chr5.4:54971630-54971649 | MS.gene88768:CDS | 40.0% |
| !!! | TTTTGGGATTGGATTGTTGG+TGG | - | chr5.4:54971633-54971652 | MS.gene88768:CDS | 40.0% |
| CTTCCTGTTGTTGGAACCAT+TGG | + | chr5.4:54971549-54971568 | None:intergenic | 45.0% | |
| GCAAAGACTCTTCCTGTTGT+TGG | + | chr5.4:54971558-54971577 | None:intergenic | 45.0% | |
| GTTCCACAAAAGAAGAAGGG+TGG | - | chr5.4:54971829-54971848 | MS.gene88768:CDS | 45.0% | |
| TGTTGGAACCATTGGCAACA+TGG | + | chr5.4:54971541-54971560 | None:intergenic | 45.0% | |
| TTGCCAATGGTTCCAACAAC+AGG | - | chr5.4:54971543-54971562 | MS.gene88768:CDS | 45.0% | |
| TTTGCAGCTACAGGTGCAAA+GGG | - | chr5.4:54971573-54971592 | MS.gene88768:CDS | 45.0% | |
| !! | AGAGGCACTACTAGCAGTAA+AGG | - | chr5.4:54971726-54971745 | MS.gene88768:CDS | 45.0% |
| !! | AGAGGTACTACTAGTGGTAG+AGG | - | chr5.4:54971759-54971778 | MS.gene88768:CDS | 45.0% |
| !! | AGTGGTAGAGGTACTACTAG+TGG | - | chr5.4:54971771-54971790 | MS.gene88768:CDS | 45.0% |
| !!! | AAGAAGAAGGGTGGTTTTGG+AGG | - | chr5.4:54971838-54971857 | MS.gene88768:CDS | 45.0% |
| CTTTGCAGCTACAGGTGCAA+AGG | - | chr5.4:54971572-54971591 | MS.gene88768:CDS | 50.0% | |
| GGAAGAGTCTTTGCAGCTAC+AGG | - | chr5.4:54971564-54971583 | MS.gene88768:CDS | 50.0% | |
| GGCAGTAGCAAGCAAGAGAA+AGG | - | chr5.4:54971609-54971628 | MS.gene88768:CDS | 50.0% | |
| !! | ACAGGTGCAAAGGGTACTAC+AGG | - | chr5.4:54971582-54971601 | MS.gene88768:CDS | 50.0% |
| GCTAGTGGTGGCAAGAACTC+TGG | - | chr5.4:54971804-54971823 | MS.gene88768:CDS | 55.0% | |
| !! | AGTGGTAGAGGCACTGCTAG+TGG | - | chr5.4:54971789-54971808 | MS.gene88768:CDS | 55.0% |
| !! | GCAAAGGGTACTACAGGTGG+TGG | - | chr5.4:54971588-54971607 | MS.gene88768:CDS | 55.0% |
| !! | GGTGCAAAGGGTACTACAGG+TGG | - | chr5.4:54971585-54971604 | MS.gene88768:CDS | 55.0% |
| !! | GGTAGAGGCACTGCTAGTGG+TGG | - | chr5.4:54971792-54971811 | MS.gene88768:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54971525 | 54971869 | 54971525 | ID=MS.gene88768 |
| chr5.4 | mRNA | 54971525 | 54971869 | 54971525 | ID=MS.gene88768.t1;Parent=MS.gene88768 |
| chr5.4 | exon | 54971525 | 54971869 | 54971525 | ID=MS.gene88768.t1.exon1;Parent=MS.gene88768.t1 |
| chr5.4 | CDS | 54971525 | 54971869 | 54971525 | ID=cds.MS.gene88768.t1;Parent=MS.gene88768.t1 |
| Gene Sequence |
| Protein sequence |
