AlfalfaGEDB | MS.gene91509

M. sativa cultivar XinJiangDaYe / MS.gene91509

KEGG: K16075
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91509.t1	PNY07103.1	94.4	196	11	0	6	201	1	196	2.00E-95	358.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91509.t1	Q058N4	85.5	166	24	0	35	200	262	427	4.9e-74	278.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91509.t1	A0A2K3NVR2	94.4	196	11	0	6	201	1	196	1.5e-95	358.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049134	MS.gene91509	-0.802033	6.80E-49	-1.69E-46
MS.gene049149	MS.gene91509	0.834622	2.70E-56	-1.69E-46
MS.gene049150	MS.gene91509	0.876966	9.17E-69	-1.69E-46
MS.gene049151	MS.gene91509	0.844131	9.14E-59	-1.69E-46
MS.gene049153	MS.gene91509	0.878001	4.00E-69	-1.69E-46
MS.gene049260	MS.gene91509	0.835033	2.12E-56	-1.69E-46
MS.gene049284	MS.gene91509	0.804889	1.74E-49	-1.69E-46
MS.gene049346	MS.gene91509	0.839988	1.14E-57	-1.69E-46
MS.gene049351	MS.gene91509	0.825057	5.77E-54	-1.69E-46
MS.gene049356	MS.gene91509	0.878673	2.32E-69	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91509.t1	MTR_2g084565	95.977	174	7	0	35	208	247	420	7.24e-116	337
MS.gene91509.t1	MTR_1g076220	30.070	143	87	2	51	193	59	188	6.71e-12	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91509.t1	AT5G22830	85.542	166	24	0	35	200	262	427	5.05e-87	265
MS.gene91509.t1	AT5G22830	85.542	166	24	0	35	200	262	427	5.05e-87	265
MS.gene91509.t1	AT5G09690	35.870	92	56	1	116	207	278	366	9.69e-12	63.9
MS.gene91509.t1	AT5G09690	35.870	92	56	1	116	207	267	355	9.92e-12	63.9
MS.gene91509.t1	AT5G09690	35.870	92	56	1	116	207	278	366	1.22e-11	63.5

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Find 65 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGTACCTGCTACAA+GGG	0.544963	2.1:-16885252	None:intergenic
AAAGGCTTCTTGATTCTGCA+AGG	0.546966	2.1:+16884647	MS.gene91509:CDS
AAATAAAGGAAACCATAATG+TGG	0.613910	2.1:+16883993	MS.gene91509:CDS
AAGGCTTCTTGATTCTGCAA+GGG	0.595349	2.1:+16884648	MS.gene91509:CDS
AATACGGAGGATATGTATTA+TGG	0.232489	2.1:+16883954	MS.gene91509:CDS
ACAACCTGAAAATTCAACCA+TGG	0.683077	2.1:-16882919	None:intergenic
ACGGAGGCTTGAAGTTAGCA+GGG	0.650280	2.1:+16885184	MS.gene91509:CDS
ACGTTTGGAGCGGAGACTGA+TGG	0.587474	2.1:+16882969	MS.gene91509:CDS
ACTGCTTCACAGGTTCATAA+TGG	0.379206	2.1:+16886717	MS.gene91509:intron
AGAAATTGTACAATAAATAA+AGG	0.382181	2.1:+16883979	MS.gene91509:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATGTACCTGCTACAA+GGG	-	chr2.1:16885255-16885274	None:intergenic	30.0%
AAAGCTAAGCTAATGAACTA+TGG	-	chr2.1:16885070-16885089	None:intergenic	30.0%
AAGTAAAGGCTTAAGATTCT+TGG	-	chr2.1:16884397-16884416	None:intergenic	30.0%
AATACGGAGGATATGTATTA+TGG	+	chr2.1:16883954-16883973	MS.gene91509:CDS	30.0%
AATTTGCCTATTTGTTCCTA+TGG	+	chr2.1:16883084-16883103	MS.gene91509:intron	30.0%
ACAAAATTCTGCCATTATGA+TGG	-	chr2.1:16885603-16885622	None:intergenic	30.0%
ACAAATTTCTCTTTGCATTG+AGG	-	chr2.1:16885095-16885114	None:intergenic	30.0%
AGAATTGTATCAAGTGATTG+TGG	+	chr2.1:16884744-16884763	MS.gene91509:intron	30.0%
AGGATGTTAATGGTAAGTAA+AGG	-	chr2.1:16884411-16884430	None:intergenic	30.0%
AGTTTGGTTAAAATTATGGG+TGG	-	chr2.1:16885320-16885339	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	16882921	16886779	16882921	ID=MS.gene91509
chr2.1	mRNA	16882921	16886779	16882921	ID=MS.gene91509.t1;Parent=MS.gene91509
chr2.1	exon	16882921	16883022	16882921	ID=MS.gene91509.t1.exon1;Parent=MS.gene91509.t1
chr2.1	CDS	16882921	16883022	16882921	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1
chr2.1	exon	16883719	16883799	16883719	ID=MS.gene91509.t1.exon2;Parent=MS.gene91509.t1
chr2.1	CDS	16883719	16883799	16883719	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1
chr2.1	exon	16883886	16884051	16883886	ID=MS.gene91509.t1.exon3;Parent=MS.gene91509.t1
chr2.1	CDS	16883886	16884051	16883886	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1
chr2.1	exon	16884154	16884199	16884154	ID=MS.gene91509.t1.exon4;Parent=MS.gene91509.t1
chr2.1	CDS	16884154	16884199	16884154	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1
chr2.1	exon	16884621	16884701	16884621	ID=MS.gene91509.t1.exon5;Parent=MS.gene91509.t1
chr2.1	CDS	16884621	16884701	16884621	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1
chr2.1	exon	16885181	16885263	16885181	ID=MS.gene91509.t1.exon6;Parent=MS.gene91509.t1
chr2.1	CDS	16885181	16885263	16885181	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1
chr2.1	exon	16885838	16885881	16885838	ID=MS.gene91509.t1.exon7;Parent=MS.gene91509.t1
chr2.1	CDS	16885838	16885881	16885838	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1
chr2.1	exon	16886729	16886779	16886729	ID=MS.gene91509.t1.exon8;Parent=MS.gene91509.t1
chr2.1	CDS	16886729	16886779	16886729	ID=cds.MS.gene91509.t1;Parent=MS.gene91509.t1

Gene Sequence

>MS.gene91509

ATGGTTGAATTTTCAGGTTGTCGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGACTGATGGACTTAGAACCTCGTGTGAGTATGGAAACACAGTGAGTAACTGAGTATGTTTATGTTCATTCTTTGTGGTATGTGTGTTCTTGCACATGTGTTAATTTGCCTATTTGTTCCTATGGCTTTGATATGTAGTTGTTTCTACACCTGTACATGAGCAAAAACTGGTAAAAATTTATGGACTTTATCAATTACTTTTGTGTGATATTTTCCTGCTACTTCTCCATGTCGACATTCTATAAGATCTTAACAGTATTATAAATGCCATTTCACGATGGTTTATTACATATTTTTATTAGCATGGTTGTTTTCATTTTTTGAAAAAAAATGATTTTAAGATTATGGAAAAAGTGTTTTTTTTTTAGAGCTTTGGCATAGAAGCTATTTTTCATGTGGTTCAAGTTATAAAAAACACTTAAATCTTTATGTGCTTAAAATAAAAAATCTGTTTTATTCAACTTTATTTTTTTACAAGGTAAAACCAAGATCTTAAGAAAATTAGAAGTGATTTTTTTCCCCCCTAAGTAAAAGTAATCTTTCATGAAAAAGCTGAACTCAACTGGCTCTTTCTATAGCATATGTCTAGTGGCAGAGACCTCCTTATTGAAATATTTTAGAGTAGACTGATTTTTTGCCTTCGGTTCATAACAGATTATATGTCTCACCCTTTTCCTGTCTCTGAATCCTGTCCCTGATTTGAATAACTTTTCTCTCCCCCTACCCCCTGGCCCTAGGTTCAAGCTCTTCTTGAGGCCTTACCAAATCGGATAACTGGGGATATACTGGAGCAACTTCGTATTAGCAAACAAACTTTGGTATTTTCTTCTGACTTTTTCTCATTAATCTTCAGCGGTTCTGAGAGCAAACAATTGATTTTATTCACTTCCTGCCAAATTGCTAGGTTGAGTTAGGCTCAAGGGCAGGAGCTCTCAGGCAGATGCTGCTTGATCTTCTGGAGGACCCAGATGAAATACGGAGGATATGTATTATGGGAAGAAATTGTACAATAAATAAAGGAAACCATAATGTGGAATGCTCAGTGCCTTTAGACAAGCAGGTTGCTGAGGGTAAGCTGTGAAATACTGGAGACATCAATACTAATCTTCTCATTCTGCAGATGACTTTAAATTATACATAGTCGCTCATTTGTTTTTTCTCATGATATGTAGAGGAGGAGGAGGAAATTGAGATGCTTCTGGAAAATTATCTCCAAAGGTTATTCTCATTCCAAATTTGTGCATTACGTATCATAATAATTATTTTTTGTGTGCTCATGTGTTGAGGATGTATATATGATAGTTGTAACACACTGCACTACAGTGTTGTATGCCTTCACGGCCTTTCTTATGTCATGTTGAGGAAGGTAATAGTCAAAGCACTAACATGGTGGAAACATGTTGAAAGTGAAACCAAGAATCTTAAGCCTTTACTTACCATTAACATCCTGAAAGCTCTCTTATCCATGTTGCAATACCTGAAAGGAATCTGCATTAAGAAACAACTCTCATAAAGCTTCTGAACTCAACAATTAGTTGATGATTCTTATAAATGTTAATTACTTTTTCTTTTGTAATAAGTTTAACATTTCTAATGATATTTCATCTTAAAGTTGAACTCTGTGTAAATGCACTTGCAGATGTGAATCTTGTCACGGTCAAGCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGTTTAAGGTTTGAATTTCTTTTTTCTCTCTTCGGCCAGGGGGGGTGTTTAGAATTGTATCAAGTGATTGTGGATTACTGCATTGAAAGAATCACATGATTTGATGATAGGAAGTTATATGATCTCCCAAAGCTGCGTTTTGCTAACCATGGAATTGTTTTTGGACTGTCATCCTTGGTTCCATTGTGAAGTCAAATTAAGGAATTAACCCTTCGTGGTCACATATTGTCATTAAAGTCAAAACCATAGTATAATAGTATAATATTATTACATTCAAGGACTTCAATCACAATTAAGAATGCATGAAATGTTTTAAACTCTTGCAATTAAAATGGACCATCTAAGAATCTAACTCCGTGCATATACTCAAACACCATAGTTCATTAGCTTAGCTTTAACCTCAATGCAAAGAGAAATTTGTCGATGTCCATAGCTCTCTGTCATCAGTAACCTTATTTGTTCTAATAACTTTGGTTCCATTCAACAGCTCACGGAGGCTTGAAGTTAGCAGGGTGGAACTGCTTCTCCAGGTTGGAACATTCTGTGTGGCAGTTGGTGCCCTTGTAGCAGGTACATATTTTGGGTGGTTCTTTGACAAAGTATGTGAAATAGGTTATATAAACCCACCCATAATTTTAACCAAACTTAATTTAAATTATTCACAATCTAGTCTGGATTAAACAGTTAACAAAATCAATTTCACATACCAGTAATTAAAGTGGACTCAAACTTGGTTAATTATAAATTTGTTAGTGGTTTGGATGGCATCAAAACAACCCCTACAGCACTTCTTAAAATCTAATAATTTTATGATCATTTAGTTCTGAAGCTTTGCCTGATAATAACATGCACTGCACCATTTAACCACCTAGGTACATGTTCATTTGTTATGCAAATTTGCTACTACCATCATAATGGCAGAATTTTGTTGTTTAATATACTTTCCATGAAGGACTTTAAAGATCTAGAATCTGGAGTTGCCAATTTGATCTCGAAAGGAACTTGTGGAAAAAATATGAACTTTTGGCTCTGTGGCATATGTGATTACGTTAAATGCACAAGACTGTCTGGTTTATCGCCTGAGAGATTGAGAGAATATTATACATTACCTGATCTATATCAAAATATTCTTTCATGATTTCAGGCATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACGTGTGGTGAGTTACTGTCTACAATCATATTCCATCTATGACTTACTTGGTTCTTTTTGGAAGTTATTGGCAATCAGTCTTGTTAAATTAACCATATTTGTGGATTTAATGCAGTTTGCATTTTGGTTGACCACATCTGGGATTATTATTGGTGGCATTGTTGTTTTTTTTATTATGTATAACTACCTCAGAGCAAGGAAAATATTTTGATCAGACGAAACTTCAAATATAGGCAAGTTTGTTACCTTCTGGCCTGTTTCCCCAGCAATCCTCCTCTTCTTAATGTATTTTTATTGTTAATCTTGTTAATGTATTTAAATTATAATATAATGTGTTAAAATCATAAACTTATAGAAAAATTTAAATATTTAATTTAAGTATATTGACCTAAATAATAAGATGAATAGATGATAAGCTATTTCAGTAGTAGTCTGTCACGTATTTAAAGATCTTATTACAAAAATAAAATTTAAAGTAGGCTTTCAAGTGGAAGATCTTTAAAAAAACTTAATCTATAAACAATTCAGGCTCAGGCCTCGATAAGCTCTGCCATACGTAACCTATTTTGACCTCTACTTCTAAGGTTTAGTCATCATTATCAATGTAACTATAATCGTATATTAAGTGCTCCGAACCTGAAGGGATTCTGATTCATTTTTCAGGTTATTTTAAAATATTAAGGAAAGTAAGCACCCACAAATGCAGTGATTGTGCACAAAGATCAATCTACGGAAATGGATTTGGAAGTATGCATGATATATTATTACTCACACAAGTGATGCTGTAACAAGCATTAGCTTTTATTCTTATTCCAGAGAGGGGTAAACAGATTCAATTTTTTACTGCTTCACAGGTTCATAATGGCTATGTGAGCTGTCAACTCCATCAAGAGACTCTTCGCTAG

Protein sequence

>MS.gene91509.t1

MVEFSGCRSSIAFKNTTFGAETDGLRTSCEYGNTVQALLEALPNRITGDILEQLRISKQTLVELGSRAGALRQMLLDLLEDPDEIRRICIMGRNCTINKGNHNVECSVPLDKQVAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAREMEDSIAVSLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLKSYLEERVVHNGYVSCQLHQETLR