Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20220.t1 | GAU11846.1 | 83.2 | 370 | 51 | 8 | 1 | 365 | 1 | 364 | 4.60E-124 | 454.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20220.t1 | Q9FLE8 | 39.2 | 166 | 88 | 2 | 212 | 364 | 223 | 388 | 2.1e-24 | 114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20220.t1 | A0A072U5Y7 | 92.9 | 294 | 20 | 1 | 1 | 293 | 1 | 294 | 9.0e-122 | 446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene20220 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene20220 | 0.88513 | 1.06E-71 | -1.69E-46 |
| MS.gene049285 | MS.gene20220 | 0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene20220 | 0.807631 | 4.60E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene20220 | 0.813865 | 2.06E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene20220 | 0.865968 | 4.02E-65 | -1.69E-46 |
| MS.gene049396 | MS.gene20220 | 0.89786 | 9.33E-77 | -1.69E-46 |
| MS.gene049600 | MS.gene20220 | 0.821176 | 4.64E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene20220 | 0.807301 | 5.40E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene20220 | 0.808083 | 3.69E-50 | -1.69E-46 |
| MS.gene049656 | MS.gene20220 | 0.804307 | 2.30E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene20220 | 0.837296 | 5.65E-57 | -1.69E-46 |
| MS.gene050170 | MS.gene20220 | 0.83949 | 1.54E-57 | -1.69E-46 |
| MS.gene050216 | MS.gene20220 | 0.825448 | 4.66E-54 | -1.69E-46 |
| MS.gene050323 | MS.gene20220 | 0.850814 | 1.33E-60 | -1.69E-46 |
| MS.gene050496 | MS.gene20220 | 0.824903 | 6.27E-54 | -1.69E-46 |
| MS.gene050499 | MS.gene20220 | 0.857598 | 1.46E-62 | -1.69E-46 |
| MS.gene050502 | MS.gene20220 | 0.895922 | 6.05E-76 | -1.69E-46 |
| MS.gene050504 | MS.gene20220 | 0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene050518 | MS.gene20220 | 0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene050520 | MS.gene20220 | 0.834129 | 3.58E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene20220 | 0.81091 | 9.11E-51 | -1.69E-46 |
| MS.gene050662 | MS.gene20220 | 0.820296 | 7.39E-53 | -1.69E-46 |
| MS.gene050686 | MS.gene20220 | 0.822582 | 2.19E-53 | -1.69E-46 |
| MS.gene050697 | MS.gene20220 | 0.84775 | 9.49E-60 | -1.69E-46 |
| MS.gene050747 | MS.gene20220 | 0.822078 | 2.87E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene20220 | 0.8322 | 1.08E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene20220 | 0.805216 | 1.49E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene20220 | 0.871377 | 7.16E-67 | -1.69E-46 |
| MS.gene050871 | MS.gene20220 | 0.875645 | 2.62E-68 | -1.69E-46 |
| MS.gene050950 | MS.gene20220 | 0.824649 | 7.20E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene20220 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene05118 | MS.gene20220 | 0.818761 | 1.66E-52 | -1.69E-46 |
| MS.gene051268 | MS.gene20220 | 0.816752 | 4.70E-52 | -1.69E-46 |
| MS.gene051509 | MS.gene20220 | 0.907658 | 3.99E-81 | -1.69E-46 |
| MS.gene051551 | MS.gene20220 | 0.810492 | 1.12E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene20220 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene20220 | 0.8161 | 6.58E-52 | -1.69E-46 |
| MS.gene051874 | MS.gene20220 | 0.814193 | 1.75E-51 | -1.69E-46 |
| MS.gene051941 | MS.gene20220 | 0.843908 | 1.05E-58 | -1.69E-46 |
| MS.gene052066 | MS.gene20220 | 0.837702 | 4.45E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene20220 | 0.815696 | 8.10E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene20220 | 0.831076 | 2.05E-55 | -1.69E-46 |
| MS.gene052414 | MS.gene20220 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene20220 | 0.800533 | 1.38E-48 | -1.69E-46 |
| MS.gene052503 | MS.gene20220 | 0.813765 | 2.17E-51 | -1.69E-46 |
| MS.gene052504 | MS.gene20220 | 0.81961 | 1.06E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene20220 | 0.821838 | 3.26E-53 | -1.69E-46 |
| MS.gene052822 | MS.gene20220 | 0.832352 | 9.93E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene20220 | 0.812064 | 5.12E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene20220 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene20220 | 0.836603 | 8.49E-57 | -1.69E-46 |
| MS.gene053018 | MS.gene20220 | 0.813328 | 2.71E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene20220 | 0.818541 | 1.86E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene20220 | 0.820455 | 6.80E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene20220 | 0.816246 | 6.10E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene20220 | 0.833524 | 5.08E-56 | -1.69E-46 |
| MS.gene053449 | MS.gene20220 | 0.863065 | 3.25E-64 | -1.69E-46 |
| MS.gene053479 | MS.gene20220 | 0.817195 | 3.74E-52 | -1.69E-46 |
| MS.gene053505 | MS.gene20220 | 0.865938 | 4.10E-65 | -1.69E-46 |
| MS.gene053574 | MS.gene20220 | 0.869071 | 4.08E-66 | -1.69E-46 |
| MS.gene053626 | MS.gene20220 | 0.852277 | 5.13E-61 | -1.69E-46 |
| MS.gene053633 | MS.gene20220 | 0.837974 | 3.79E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene20220 | 0.831148 | 1.97E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene20220 | 0.843338 | 1.49E-58 | -1.69E-46 |
| MS.gene053912 | MS.gene20220 | 0.828663 | 7.93E-55 | -1.69E-46 |
| MS.gene053916 | MS.gene20220 | 0.813474 | 2.51E-51 | -1.69E-46 |
| MS.gene054003 | MS.gene20220 | 0.802668 | 5.03E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene20220 | 0.814124 | 1.81E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene20220 | 0.844561 | 7.01E-59 | -1.69E-46 |
| MS.gene05494 | MS.gene20220 | 0.83511 | 2.03E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene20220 | 0.810977 | 8.81E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene20220 | 0.826273 | 2.97E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene20220 | 0.849278 | 3.58E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene20220 | 0.80003 | 1.74E-48 | -1.69E-46 |
| MS.gene055722 | MS.gene20220 | 0.8305 | 2.84E-55 | -1.69E-46 |
| MS.gene055741 | MS.gene20220 | 0.829488 | 5.01E-55 | -1.69E-46 |
| MS.gene055744 | MS.gene20220 | 0.823222 | 1.56E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene20220 | 0.821292 | 4.36E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene20220 | 0.833692 | 4.61E-56 | -1.69E-46 |
| MS.gene055909 | MS.gene20220 | 0.867741 | 1.09E-65 | -1.69E-46 |
| MS.gene055911 | MS.gene20220 | 0.863181 | 2.99E-64 | -1.69E-46 |
| MS.gene055941 | MS.gene20220 | 0.810105 | 1.36E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene20220 | 0.871753 | 5.37E-67 | -1.69E-46 |
| MS.gene056387 | MS.gene20220 | 0.850882 | 1.27E-60 | -1.69E-46 |
| MS.gene056422 | MS.gene20220 | 0.889017 | 3.53E-73 | -1.69E-46 |
| MS.gene056446 | MS.gene20220 | 0.825952 | 3.54E-54 | -1.69E-46 |
| MS.gene056448 | MS.gene20220 | 0.815751 | 7.87E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene20220 | 0.860289 | 2.29E-63 | -1.69E-46 |
| MS.gene056510 | MS.gene20220 | 0.825277 | 5.12E-54 | -1.69E-46 |
| MS.gene056511 | MS.gene20220 | 0.820144 | 8.01E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene20220 | 0.813078 | 3.07E-51 | -1.69E-46 |
| MS.gene05666 | MS.gene20220 | 0.823086 | 1.67E-53 | -1.69E-46 |
| MS.gene056878 | MS.gene20220 | 0.829949 | 3.86E-55 | -1.69E-46 |
| MS.gene057019 | MS.gene20220 | 0.850625 | 1.50E-60 | -1.69E-46 |
| MS.gene057076 | MS.gene20220 | 0.825242 | 5.22E-54 | -1.69E-46 |
| MS.gene057086 | MS.gene20220 | 0.903994 | 1.95E-79 | -1.69E-46 |
| MS.gene057331 | MS.gene20220 | 0.81259 | 3.93E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene20220 | 0.800226 | 1.59E-48 | -1.69E-46 |
| MS.gene057734 | MS.gene20220 | 0.869348 | 3.31E-66 | -1.69E-46 |
| MS.gene057856 | MS.gene20220 | 0.815687 | 8.14E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene20220 | 0.837482 | 5.07E-57 | -1.69E-46 |
| MS.gene057926 | MS.gene20220 | 0.816991 | 4.16E-52 | -1.69E-46 |
| MS.gene058075 | MS.gene20220 | 0.817756 | 2.80E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene20220 | 0.823086 | 1.67E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene20220 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene20220 | 0.813365 | 2.66E-51 | -1.69E-46 |
| MS.gene058459 | MS.gene20220 | 0.865784 | 4.59E-65 | -1.69E-46 |
| MS.gene059129 | MS.gene20220 | 0.809141 | 2.19E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene20220 | 0.827998 | 1.15E-54 | -1.69E-46 |
| MS.gene059305 | MS.gene20220 | 0.876439 | 1.40E-68 | -1.69E-46 |
| MS.gene059367 | MS.gene20220 | 0.866723 | 2.31E-65 | -1.69E-46 |
| MS.gene059368 | MS.gene20220 | 0.852321 | 4.98E-61 | -1.69E-46 |
| MS.gene059517 | MS.gene20220 | 0.847875 | 8.77E-60 | -1.69E-46 |
| MS.gene059667 | MS.gene20220 | 0.813656 | 2.29E-51 | -1.69E-46 |
| MS.gene059674 | MS.gene20220 | 0.848412 | 6.23E-60 | -1.69E-46 |
| MS.gene059680 | MS.gene20220 | 0.85671 | 2.68E-62 | -1.69E-46 |
| MS.gene059711 | MS.gene20220 | 0.821313 | 4.32E-53 | -1.69E-46 |
| MS.gene059807 | MS.gene20220 | 0.836734 | 7.86E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene20220 | 0.8607 | 1.72E-63 | -1.69E-46 |
| MS.gene06000 | MS.gene20220 | 0.848422 | 6.19E-60 | -1.69E-46 |
| MS.gene060372 | MS.gene20220 | 0.868472 | 6.36E-66 | -1.69E-46 |
| MS.gene060401 | MS.gene20220 | 0.83062 | 2.65E-55 | -1.69E-46 |
| MS.gene060482 | MS.gene20220 | 0.858979 | 5.68E-63 | -1.69E-46 |
| MS.gene060762 | MS.gene20220 | 0.802824 | 4.67E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene20220 | 0.860172 | 2.49E-63 | -1.69E-46 |
| MS.gene06077 | MS.gene20220 | 0.818518 | 1.88E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene20220 | 0.828425 | 9.05E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene20220 | 0.855404 | 6.45E-62 | -1.69E-46 |
| MS.gene06097 | MS.gene20220 | 0.921571 | 3.01E-88 | -1.69E-46 |
| MS.gene060982 | MS.gene20220 | 0.846558 | 2.01E-59 | -1.69E-46 |
| MS.gene061134 | MS.gene20220 | 0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene061218 | MS.gene20220 | 0.841823 | 3.76E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20220.t1 | MTR_8g099665 | 96.739 | 368 | 9 | 2 | 1 | 365 | 1 | 368 | 0.0 | 717 |
| MS.gene20220.t1 | MTR_1g090400 | 45.699 | 186 | 90 | 4 | 180 | 364 | 193 | 368 | 1.72e-46 | 162 |
| MS.gene20220.t1 | MTR_7g104720 | 42.771 | 166 | 84 | 3 | 201 | 364 | 248 | 404 | 1.78e-40 | 147 |
| MS.gene20220.t1 | MTR_7g106500 | 37.281 | 228 | 114 | 6 | 153 | 364 | 64 | 278 | 9.91e-40 | 142 |
| MS.gene20220.t1 | MTR_8g106900 | 45.783 | 166 | 80 | 3 | 204 | 364 | 113 | 273 | 2.10e-35 | 130 |
| MS.gene20220.t1 | MTR_3g017490 | 44.304 | 158 | 77 | 4 | 210 | 364 | 111 | 260 | 2.18e-35 | 131 |
| MS.gene20220.t1 | MTR_5g083110 | 43.671 | 158 | 80 | 4 | 209 | 365 | 90 | 239 | 2.67e-35 | 129 |
| MS.gene20220.t1 | MTR_7g010090 | 30.794 | 315 | 155 | 10 | 88 | 364 | 142 | 431 | 3.44e-32 | 125 |
| MS.gene20220.t1 | MTR_7g090230 | 39.130 | 161 | 82 | 4 | 210 | 364 | 274 | 424 | 2.01e-31 | 123 |
| MS.gene20220.t1 | MTR_8g038440 | 41.830 | 153 | 83 | 3 | 214 | 364 | 106 | 254 | 5.21e-31 | 118 |
| MS.gene20220.t1 | MTR_6g011640 | 37.624 | 202 | 104 | 6 | 180 | 364 | 200 | 396 | 1.06e-30 | 120 |
| MS.gene20220.t1 | MTR_1g051180 | 38.462 | 169 | 84 | 4 | 208 | 364 | 203 | 363 | 7.58e-30 | 118 |
| MS.gene20220.t1 | MTR_5g072400 | 41.772 | 158 | 81 | 4 | 210 | 365 | 106 | 254 | 1.83e-28 | 112 |
| MS.gene20220.t1 | MTR_3g465550 | 39.735 | 151 | 83 | 4 | 210 | 359 | 84 | 227 | 1.84e-27 | 108 |
| MS.gene20220.t1 | MTR_3g071510 | 35.065 | 154 | 91 | 4 | 213 | 365 | 90 | 235 | 2.63e-24 | 100 |
| MS.gene20220.t1 | MTR_3g030520 | 37.888 | 161 | 79 | 5 | 221 | 364 | 142 | 298 | 1.56e-21 | 94.0 |
| MS.gene20220.t1 | MTR_7g079015 | 39.583 | 96 | 50 | 4 | 254 | 345 | 1 | 92 | 2.75e-13 | 65.9 |
| MS.gene20220.t1 | MTR_2g026830 | 39.130 | 92 | 52 | 3 | 254 | 345 | 1 | 88 | 1.45e-12 | 63.5 |
| MS.gene20220.t1 | MTR_1g098230 | 40.476 | 84 | 43 | 3 | 266 | 345 | 12 | 92 | 4.83e-12 | 62.4 |
| MS.gene20220.t1 | MTR_1g053325 | 38.889 | 90 | 51 | 3 | 254 | 341 | 1 | 88 | 3.43e-11 | 60.1 |
| MS.gene20220.t1 | MTR_1g095960 | 38.043 | 92 | 49 | 3 | 258 | 345 | 32 | 119 | 4.02e-11 | 60.5 |
| MS.gene20220.t1 | MTR_5g065050 | 37.143 | 70 | 42 | 1 | 278 | 345 | 23 | 92 | 4.43e-11 | 59.7 |
| MS.gene20220.t1 | MTR_2g028040 | 37.895 | 95 | 54 | 4 | 254 | 345 | 1 | 93 | 7.55e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20220.t1 | AT1G64500 | 43.377 | 385 | 179 | 13 | 1 | 365 | 1 | 366 | 8.07e-93 | 282 |
| MS.gene20220.t1 | AT5G06470 | 38.057 | 247 | 107 | 8 | 147 | 364 | 9 | 238 | 7.41e-42 | 147 |
| MS.gene20220.t1 | AT4G10630 | 42.929 | 198 | 100 | 5 | 179 | 364 | 137 | 333 | 1.07e-41 | 149 |
| MS.gene20220.t1 | AT5G03870 | 43.128 | 211 | 102 | 5 | 156 | 364 | 189 | 383 | 1.93e-40 | 147 |
| MS.gene20220.t1 | AT5G39865 | 33.677 | 291 | 155 | 7 | 88 | 364 | 122 | 388 | 4.94e-40 | 146 |
| MS.gene20220.t1 | AT5G01420 | 41.317 | 167 | 90 | 3 | 199 | 364 | 241 | 400 | 2.42e-37 | 139 |
| MS.gene20220.t1 | AT3G28850 | 41.573 | 178 | 79 | 3 | 212 | 364 | 249 | 426 | 2.48e-35 | 134 |
| MS.gene20220.t1 | AT3G57070 | 42.038 | 157 | 84 | 3 | 210 | 364 | 264 | 415 | 5.38e-35 | 133 |
| MS.gene20220.t1 | AT1G32760 | 47.368 | 171 | 83 | 3 | 199 | 364 | 145 | 313 | 1.31e-33 | 127 |
| MS.gene20220.t1 | AT5G13810 | 40.881 | 159 | 81 | 5 | 210 | 364 | 123 | 272 | 2.68e-31 | 120 |
| MS.gene20220.t1 | AT5G58530 | 40.373 | 161 | 86 | 4 | 210 | 364 | 109 | 265 | 3.47e-31 | 119 |
| MS.gene20220.t1 | AT2G41330 | 41.060 | 151 | 81 | 3 | 216 | 364 | 256 | 400 | 9.66e-31 | 121 |
| MS.gene20220.t1 | AT3G11773 | 41.333 | 150 | 78 | 3 | 216 | 364 | 9 | 149 | 7.74e-29 | 109 |
| MS.gene20220.t1 | AT3G11773 | 29.148 | 223 | 112 | 6 | 156 | 364 | 9 | 199 | 1.71e-16 | 77.8 |
Find 109 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTGAAGGGTAGGTATT+TGG | 0.146439 | 4.4:-4640673 | MS.gene20220:CDS |
| TCGAGAGAATAGAAAGATTA+AGG | 0.197504 | 4.4:-4640947 | MS.gene20220:CDS |
| CAACAAAGCAAGAGACTTAT+TGG | 0.220866 | 4.4:-4640817 | MS.gene20220:CDS |
| GGGTTAGATTTGTTCCTTGT+TGG | 0.297441 | 4.4:-4640539 | MS.gene20220:CDS |
| GGGTGGGTTGGAAGAGTTGA+TGG | 0.306913 | 4.4:-4640652 | MS.gene20220:CDS |
| TTATTATCGGAGGAAGAGTT+AGG | 0.318401 | 4.4:-4640720 | MS.gene20220:CDS |
| GAGACTTATTGGAGAATCAT+AGG | 0.318410 | 4.4:-4640806 | MS.gene20220:CDS |
| TTTGTGAAGGGTAGGTATTT+GGG | 0.321727 | 4.4:-4640672 | MS.gene20220:CDS |
| AGTGAAGGAGTTGTTATTAT+CGG | 0.324310 | 4.4:-4640733 | MS.gene20220:CDS |
| CGTCGGTGGTGGCTGGTATA+CGG | 0.337782 | 4.4:+4641472 | None:intergenic |
| AGTTGTAAGTTGGTTACTGC+TGG | 0.359692 | 4.4:-4640504 | MS.gene20220:CDS |
| TTCTTGGGAGATGGTGTTGT+TGG | 0.375160 | 4.4:+4641388 | None:intergenic |
| GGTTAGATTTGTTCCTTGTT+GGG | 0.389547 | 4.4:-4640538 | MS.gene20220:CDS |
| AAGGGTGTGGTGGATGTGGT+GGG | 0.409163 | 4.4:-4640560 | MS.gene20220:CDS |
| CAAGGGTGTGGTGGATGTGG+TGG | 0.419400 | 4.4:-4640561 | MS.gene20220:CDS |
| GGGTTGGTGTGGTCTTGCCA+AGG | 0.424049 | 4.4:-4640698 | MS.gene20220:CDS |
| CTTAATGAAACGGGTCGACT+TGG | 0.425286 | 4.4:-4640627 | MS.gene20220:CDS |
| ACTACGGCATCGTTTCCATT+TGG | 0.427099 | 4.4:+4640888 | None:intergenic |
| GAAATAAATTAAAGACAAGT+AGG | 0.431871 | 4.4:+4640432 | None:intergenic |
| GAACAGCGGGTTTGAGTTGT+TGG | 0.436431 | 4.4:+4641276 | None:intergenic |
| GGTGATGGTGGTGTTGGTTG+AGG | 0.438551 | 4.4:+4641245 | None:intergenic |
| AGACAAGGGTGTGGTGGATG+TGG | 0.440591 | 4.4:-4640564 | MS.gene20220:CDS |
| GAGCGTGACGTGGCACTTCA+TGG | 0.441197 | 4.4:-4640771 | MS.gene20220:CDS |
| TTGTGGTGGGAGTTGTAAGT+TGG | 0.448165 | 4.4:-4640514 | MS.gene20220:CDS |
| ACGGCATCGTTTCCATTTGG+TGG | 0.448912 | 4.4:+4640891 | None:intergenic |
| TTTCTGGATAGTTGCTTAGT+GGG | 0.451141 | 4.4:+4640919 | None:intergenic |
| AGAATAGGAGGAGGTAGAGC+AGG | 0.459393 | 4.4:+4641359 | None:intergenic |
| GACGGTGGTGATGGTGGTGT+TGG | 0.459996 | 4.4:+4641239 | None:intergenic |
| GTTGTAAGTTGGTTACTGCT+GGG | 0.466872 | 4.4:-4640503 | MS.gene20220:CDS |
| GTTGATGGAGCTTAATGAAA+CGG | 0.469159 | 4.4:-4640637 | MS.gene20220:CDS |
| TTCCTTGTTGGGATTGTGGT+GGG | 0.474378 | 4.4:-4640527 | MS.gene20220:CDS |
| TGCCCCAAGTGTAATGAGAA+TGG | 0.478008 | 4.4:-4640468 | MS.gene20220:CDS |
| GCAACCTTACGTGGAGGTTG+TGG | 0.479161 | 4.4:+4641197 | None:intergenic |
| CGAAACTCGTCGGTGGTGGC+TGG | 0.479813 | 4.4:+4641465 | None:intergenic |
| GCATCGAGGATGTGGAGAAT+AGG | 0.485175 | 4.4:+4641344 | None:intergenic |
| GTTGGTTGAGATTGTGGTTG+TGG | 0.490105 | 4.4:+4641098 | None:intergenic |
| TATTATCGGAGGAAGAGTTA+GGG | 0.490482 | 4.4:-4640719 | MS.gene20220:CDS |
| TGGTGTTGTTGGTGTTGTTG+AGG | 0.493565 | 4.4:+4641399 | None:intergenic |
| GGTGGTGATGACGGTGGTGA+TGG | 0.493874 | 4.4:+4641230 | None:intergenic |
| TTTCAGTAGCATCGAGGATG+TGG | 0.496651 | 4.4:+4641336 | None:intergenic |
| GGTTGGTGTGGTCTTGCCAA+GGG | 0.497158 | 4.4:-4640697 | MS.gene20220:CDS |
| GCCCCAAGTGTAATGAGAAT+GGG | 0.500482 | 4.4:-4640467 | MS.gene20220:CDS |
| GGGTAGGTATTTGGGTGGGT+TGG | 0.501310 | 4.4:-4640664 | MS.gene20220:CDS |
| TTGATGGAGCTTAATGAAAC+GGG | 0.505824 | 4.4:-4640636 | MS.gene20220:CDS |
| TGAGGAAGTTGTTGAACAGC+GGG | 0.508452 | 4.4:+4641263 | None:intergenic |
| TTCTTCGTTGGTTGAGATTG+TGG | 0.509177 | 4.4:+4641092 | None:intergenic |
| TAACCCATTCTCATTACACT+TGG | 0.509664 | 4.4:+4640464 | None:intergenic |
| TTGCCAAGGGTGTTTGTGAA+GGG | 0.511271 | 4.4:-4640684 | MS.gene20220:CDS |
| TGGCTGGTATACGGCGGGTG+CGG | 0.511794 | 4.4:+4641481 | None:intergenic |
| GGTTGTGGTTGTTGCGATGG+TGG | 0.514361 | 4.4:+4641212 | None:intergenic |
| AACCCATTCTCATTACACTT+GGG | 0.515602 | 4.4:+4640465 | None:intergenic |
| GGTGATGACGGTGGTGATGG+TGG | 0.516672 | 4.4:+4641233 | None:intergenic |
| CTTGCCAAGGGTGTTTGTGA+AGG | 0.518157 | 4.4:-4640685 | MS.gene20220:CDS |
| GTGAAGGGTAGGTATTTGGG+TGG | 0.520089 | 4.4:-4640669 | MS.gene20220:CDS |
| ACCGCGAAACTCGTCGGTGG+TGG | 0.521658 | 4.4:+4641461 | None:intergenic |
| TCGGAGGAAGAGTTAGGGGT+TGG | 0.522640 | 4.4:-4640714 | MS.gene20220:CDS |
| GGAGGTTGTGGTTGTTGCGA+TGG | 0.526560 | 4.4:+4641209 | None:intergenic |
| TGAAGGGTAGGTATTTGGGT+GGG | 0.529660 | 4.4:-4640668 | MS.gene20220:CDS |
| AGGGTGTGGTGGATGTGGTG+GGG | 0.535711 | 4.4:-4640559 | MS.gene20220:CDS |
| AGGATGTGGAGAATAGGAGG+AGG | 0.536843 | 4.4:+4641350 | None:intergenic |
| GCCACCACCGACGAGTTTCG+CGG | 0.538659 | 4.4:-4641462 | MS.gene20220:CDS |
| ACGAAGAACGTTGTTGATGT+TGG | 0.540254 | 4.4:-4641077 | MS.gene20220:CDS |
| AGACATACTAGAGAAACAAA+AGG | 0.541873 | 4.4:-4640988 | MS.gene20220:CDS |
| TTGTAAGTTGGTTACTGCTG+GGG | 0.542030 | 4.4:-4640502 | MS.gene20220:CDS |
| GTTGGAAGACAAGGGTGTGG+TGG | 0.542555 | 4.4:-4640570 | MS.gene20220:CDS |
| GGTGGTGGCTGGTATACGGC+GGG | 0.546279 | 4.4:+4641476 | None:intergenic |
| ACCCATTCTCATTACACTTG+GGG | 0.546633 | 4.4:+4640466 | None:intergenic |
| AGACTTATTGGAGAATCATA+GGG | 0.547504 | 4.4:-4640805 | MS.gene20220:CDS |
| ACATCAACAACGTTCTTCGT+TGG | 0.551192 | 4.4:+4641080 | None:intergenic |
| TTTGTTCCTTGTTGGGATTG+TGG | 0.552057 | 4.4:-4640531 | MS.gene20220:CDS |
| CTACCCTTCACAAACACCCT+TGG | 0.555761 | 4.4:+4640681 | None:intergenic |
| CGATGTTGTATATATTACTA+CGG | 0.556682 | 4.4:+4640872 | None:intergenic |
| TAACTCTTCGAGTGTGTGAA+AGG | 0.560614 | 4.4:+4641172 | None:intergenic |
| ATTAAAGACAAGTAGGGCAA+TGG | 0.560759 | 4.4:+4640439 | None:intergenic |
| TCGAGGATGTGGAGAATAGG+AGG | 0.560778 | 4.4:+4641347 | None:intergenic |
| GAGAGAGGTGTTGGAAGACA+AGG | 0.562632 | 4.4:-4640579 | MS.gene20220:CDS |
| ACACGTGTGGAGAGAGGTGT+TGG | 0.566087 | 4.4:-4640588 | MS.gene20220:CDS |
| CAAGGGTGTTTGTGAAGGGT+AGG | 0.566480 | 4.4:-4640680 | MS.gene20220:CDS |
| TTAATGAAACGGGTCGACTT+GGG | 0.568465 | 4.4:-4640626 | MS.gene20220:CDS |
| CTAACTTCATCCCATGATTG+CGG | 0.572159 | 4.4:+4641308 | None:intergenic |
| TTTGTCATCATCAAAACTGA+AGG | 0.573178 | 4.4:-4641030 | MS.gene20220:CDS |
| TGTTGCGATGGTGGTGATGA+CGG | 0.575646 | 4.4:+4641221 | None:intergenic |
| AAATAAATTAAAGACAAGTA+GGG | 0.576677 | 4.4:+4640433 | None:intergenic |
| ACAACCACAACCTCCACGTA+AGG | 0.576775 | 4.4:-4641201 | MS.gene20220:CDS |
| ATTATCGGAGGAAGAGTTAG+GGG | 0.578446 | 4.4:-4640718 | MS.gene20220:CDS |
| CGGTGGTGGCTGGTATACGG+CGG | 0.578466 | 4.4:+4641475 | None:intergenic |
| GTTCCTTGTTGGGATTGTGG+TGG | 0.579622 | 4.4:-4640528 | MS.gene20220:CDS |
| GAGAATAGAAAGATTAAGGA+GGG | 0.583465 | 4.4:-4640943 | MS.gene20220:CDS |
| GGTTGAGATTGTGGTTGTGG+TGG | 0.587118 | 4.4:+4641101 | None:intergenic |
| GAAGGAGTTGTTATTATCGG+AGG | 0.597320 | 4.4:-4640730 | MS.gene20220:CDS |
| TGTAAGTTGGTTACTGCTGG+GGG | 0.598859 | 4.4:-4640501 | MS.gene20220:CDS |
| TGAAAGGAAGCAACCTTACG+TGG | 0.600622 | 4.4:+4641188 | None:intergenic |
| GGTGTTGGAAGACAAGGGTG+TGG | 0.601057 | 4.4:-4640573 | MS.gene20220:CDS |
| AGAGAGGTGTTGGAAGACAA+GGG | 0.609103 | 4.4:-4640578 | MS.gene20220:CDS |
| GGAAGAGTTAGGGGTTGGTG+TGG | 0.612906 | 4.4:-4640709 | MS.gene20220:CDS |
| AGAGAATAGAAAGATTAAGG+AGG | 0.613300 | 4.4:-4640944 | MS.gene20220:CDS |
| ATGAAACGGGTCGACTTGGG+AGG | 0.616823 | 4.4:-4640623 | MS.gene20220:CDS |
| GATATTGAATGCGACACGTG+TGG | 0.626654 | 4.4:-4640601 | MS.gene20220:CDS |
| CTCCCACCACAATCCCAACA+AGG | 0.638521 | 4.4:+4640525 | None:intergenic |
| TAAACGCCATCGAAGAGCCA+TGG | 0.640163 | 4.4:-4641430 | MS.gene20220:CDS |
| TTGAGGAAGTTGTTGAACAG+CGG | 0.650382 | 4.4:+4641262 | None:intergenic |
| TGTGTTTGATGAGCGTGACG+TGG | 0.654924 | 4.4:-4640781 | MS.gene20220:CDS |
| TCGAACACCGCGAAACTCGT+CGG | 0.663637 | 4.4:+4641455 | None:intergenic |
| ATATATACAACATCGTTGAG+AGG | 0.672095 | 4.4:-4640864 | MS.gene20220:CDS |
| AATGCGACACGTGTGGAGAG+AGG | 0.678434 | 4.4:-4640594 | MS.gene20220:CDS |
| AACACCGCGAAACTCGTCGG+TGG | 0.682439 | 4.4:+4641458 | None:intergenic |
| AAGGAAGCAACCTTACGTGG+AGG | 0.729570 | 4.4:+4641191 | None:intergenic |
| TTGTTGATGTTGGTTCAGTG+AGG | 0.729785 | 4.4:-4641067 | MS.gene20220:CDS |
| TGCGATGGTGGTGATGACGG+TGG | 0.737769 | 4.4:+4641224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CGATGTTGTATATATTACTA+CGG | + | chr4.4:4641086-4641105 | None:intergenic | 25.0% |
| AGACATACTAGAGAAACAAA+AGG | - | chr4.4:4640967-4640986 | MS.gene20220:CDS | 30.0% | |
| AGACTTATTGGAGAATCATA+GGG | - | chr4.4:4641150-4641169 | MS.gene20220:CDS | 30.0% | |
| AGAGAATAGAAAGATTAAGG+AGG | - | chr4.4:4641011-4641030 | MS.gene20220:CDS | 30.0% | |
| ATATATACAACATCGTTGAG+AGG | - | chr4.4:4641091-4641110 | MS.gene20220:CDS | 30.0% | |
| GAGAATAGAAAGATTAAGGA+GGG | - | chr4.4:4641012-4641031 | MS.gene20220:CDS | 30.0% | |
| TCGAGAGAATAGAAAGATTA+AGG | - | chr4.4:4641008-4641027 | MS.gene20220:CDS | 30.0% | |
| TTTGTCATCATCAAAACTGA+AGG | - | chr4.4:4640925-4640944 | MS.gene20220:CDS | 30.0% | |
| ! | ACTTCATGGAGAGTTTTTAA+AGG | - | chr4.4:4641198-4641217 | MS.gene20220:CDS | 30.0% |
| ! | AGTGAAGGAGTTGTTATTAT+CGG | - | chr4.4:4641222-4641241 | MS.gene20220:CDS | 30.0% |
| !! | AGAGTTTTTAAAGGAAGTGA+AGG | - | chr4.4:4641207-4641226 | MS.gene20220:CDS | 30.0% |
| !!! | AGTTTTGATGATGACAAAGA+TGG | + | chr4.4:4640923-4640942 | None:intergenic | 30.0% |
| AACCCATTCTCATTACACTT+GGG | + | chr4.4:4641493-4641512 | None:intergenic | 35.0% | |
| CAACAAAGCAAGAGACTTAT+TGG | - | chr4.4:4641138-4641157 | MS.gene20220:CDS | 35.0% | |
| GAGACTTATTGGAGAATCAT+AGG | - | chr4.4:4641149-4641168 | MS.gene20220:CDS | 35.0% | |
| TAACCCATTCTCATTACACT+TGG | + | chr4.4:4641494-4641513 | None:intergenic | 35.0% | |
| TATTATCGGAGGAAGAGTTA+GGG | - | chr4.4:4641236-4641255 | MS.gene20220:CDS | 35.0% | |
| TGAAAAATCTCCGCAATCAT+GGG | - | chr4.4:4640637-4640656 | MS.gene20220:CDS | 35.0% | |
| TTATTATCGGAGGAAGAGTT+AGG | - | chr4.4:4641235-4641254 | MS.gene20220:CDS | 35.0% | |
| TTGATGGAGCTTAATGAAAC+GGG | - | chr4.4:4641319-4641338 | MS.gene20220:CDS | 35.0% | |
| TTTCTGGATAGTTGCTTAGT+GGG | + | chr4.4:4641039-4641058 | None:intergenic | 35.0% | |
| TTTGTGAAGGGTAGGTATTT+GGG | - | chr4.4:4641283-4641302 | MS.gene20220:CDS | 35.0% | |
| ! | GGTTAGATTTGTTCCTTGTT+GGG | - | chr4.4:4641417-4641436 | MS.gene20220:CDS | 35.0% |
| ! | GTTGATGGAGCTTAATGAAA+CGG | - | chr4.4:4641318-4641337 | MS.gene20220:CDS | 35.0% |
| ! | TAGAGCAGGTTTTTCTTCTT+GGG | + | chr4.4:4640585-4640604 | None:intergenic | 35.0% |
| ! | TTTTCTGGATAGTTGCTTAG+TGG | + | chr4.4:4641040-4641059 | None:intergenic | 35.0% |
| ACATCAACAACGTTCTTCGT+TGG | + | chr4.4:4640878-4640897 | None:intergenic | 40.0% | |
| ACCCATTCTCATTACACTTG+GGG | + | chr4.4:4641492-4641511 | None:intergenic | 40.0% | |
| ACGAAGAACGTTGTTGATGT+TGG | - | chr4.4:4640878-4640897 | MS.gene20220:CDS | 40.0% | |
| ATTATCGGAGGAAGAGTTAG+GGG | - | chr4.4:4641237-4641256 | MS.gene20220:CDS | 40.0% | |
| CCAGAAAAATGTCCACCAAA+TGG | - | chr4.4:4641052-4641071 | MS.gene20220:CDS | 40.0% | |
| CTAACTTCATCCCATGATTG+CGG | + | chr4.4:4640650-4640669 | None:intergenic | 40.0% | |
| CTGAAAAATCTCCGCAATCA+TGG | - | chr4.4:4640636-4640655 | MS.gene20220:CDS | 40.0% | |
| GTTTGTGAAGGGTAGGTATT+TGG | - | chr4.4:4641282-4641301 | MS.gene20220:CDS | 40.0% | |
| TAACTCTTCGAGTGTGTGAA+AGG | + | chr4.4:4640786-4640805 | None:intergenic | 40.0% | |
| TTGAGGAAGTTGTTGAACAG+CGG | + | chr4.4:4640696-4640715 | None:intergenic | 40.0% | |
| TTTGTTCCTTGTTGGGATTG+TGG | - | chr4.4:4641424-4641443 | MS.gene20220:CDS | 40.0% | |
| ! | AGGTTTTTCTTCTTGGGAGA+TGG | + | chr4.4:4640579-4640598 | None:intergenic | 40.0% |
| ! | GAAGGAGTTGTTATTATCGG+AGG | - | chr4.4:4641225-4641244 | MS.gene20220:CDS | 40.0% |
| ! | GGGTTAGATTTGTTCCTTGT+TGG | - | chr4.4:4641416-4641435 | MS.gene20220:CDS | 40.0% |
| ! | GTAGAGCAGGTTTTTCTTCT+TGG | + | chr4.4:4640586-4640605 | None:intergenic | 40.0% |
| ! | TTAATGAAACGGGTCGACTT+GGG | - | chr4.4:4641329-4641348 | MS.gene20220:CDS | 40.0% |
| ! | TTCTTCGTTGGTTGAGATTG+TGG | + | chr4.4:4640866-4640885 | None:intergenic | 40.0% |
| !! | AGTTGTAAGTTGGTTACTGC+TGG | - | chr4.4:4641451-4641470 | MS.gene20220:CDS | 40.0% |
| !! | CCATTTGGTGGACATTTTTC+TGG | + | chr4.4:4641055-4641074 | None:intergenic | 40.0% |
| !! | GAGATTTTTCAGTAGCATCG+AGG | + | chr4.4:4640628-4640647 | None:intergenic | 40.0% |
| !! | GGGACTCGTTTTTCTTCTTT+GGG | + | chr4.4:4640823-4640842 | None:intergenic | 40.0% |
| !! | GTTGTAAGTTGGTTACTGCT+GGG | - | chr4.4:4641452-4641471 | MS.gene20220:CDS | 40.0% |
| !! | TGGGACTCGTTTTTCTTCTT+TGG | + | chr4.4:4640824-4640843 | None:intergenic | 40.0% |
| !! | TTGTAAGTTGGTTACTGCTG+GGG | - | chr4.4:4641453-4641472 | MS.gene20220:CDS | 40.0% |
| !! | TTGTTGATGTTGGTTCAGTG+AGG | - | chr4.4:4640888-4640907 | MS.gene20220:CDS | 40.0% |
| !!! | TTGTGGTGGTTTTAGTGACT+GGG | + | chr4.4:4640843-4640862 | None:intergenic | 40.0% |
| !!! | TTGTTGAGGTGTTTTAGCCA+TGG | + | chr4.4:4640545-4640564 | None:intergenic | 40.0% |
| ACTACGGCATCGTTTCCATT+TGG | + | chr4.4:4641070-4641089 | None:intergenic | 45.0% | |
| CTTAATGAAACGGGTCGACT+TGG | - | chr4.4:4641328-4641347 | MS.gene20220:CDS | 45.0% | |
| GATATTGAATGCGACACGTG+TGG | - | chr4.4:4641354-4641373 | MS.gene20220:CDS | 45.0% | |
| GCCCCAAGTGTAATGAGAAT+GGG | - | chr4.4:4641488-4641507 | MS.gene20220:CDS | 45.0% | |
| GTTGGTTGAGATTGTGGTTG+TGG | + | chr4.4:4640860-4640879 | None:intergenic | 45.0% | |
| TGAAAGGAAGCAACCTTACG+TGG | + | chr4.4:4640770-4640789 | None:intergenic | 45.0% | |
| TGAAGGGTAGGTATTTGGGT+GGG | - | chr4.4:4641287-4641306 | MS.gene20220:CDS | 45.0% | |
| TGAGGAAGTTGTTGAACAGC+GGG | + | chr4.4:4640695-4640714 | None:intergenic | 45.0% | |
| TGCCCCAAGTGTAATGAGAA+TGG | - | chr4.4:4641487-4641506 | MS.gene20220:CDS | 45.0% | |
| TTACTGCTGGGGGTGAAATA+AGG | - | chr4.4:4641464-4641483 | MS.gene20220:CDS | 45.0% | |
| TTCCTTGTTGGGATTGTGGT+GGG | - | chr4.4:4641428-4641447 | MS.gene20220:CDS | 45.0% | |
| ! | TTGTGGTGGGAGTTGTAAGT+TGG | - | chr4.4:4641441-4641460 | MS.gene20220:CDS | 45.0% |
| ! | TTTCAGTAGCATCGAGGATG+TGG | + | chr4.4:4640622-4640641 | None:intergenic | 45.0% |
| ! | TTTTAGCCATGGCTCTTCGA+TGG | + | chr4.4:4640534-4640553 | None:intergenic | 45.0% |
| !! | AGAGAGGTGTTGGAAGACAA+GGG | - | chr4.4:4641377-4641396 | MS.gene20220:CDS | 45.0% |
| !! | TGGTGTTGTTGGTGTTGTTG+AGG | + | chr4.4:4640559-4640578 | None:intergenic | 45.0% |
| !! | TGTAAGTTGGTTACTGCTGG+GGG | - | chr4.4:4641454-4641473 | MS.gene20220:CDS | 45.0% |
| !! | TTCTTGGGAGATGGTGTTGT+TGG | + | chr4.4:4640570-4640589 | None:intergenic | 45.0% |
| !! | TTGCCAAGGGTGTTTGTGAA+GGG | - | chr4.4:4641271-4641290 | MS.gene20220:CDS | 45.0% |
| !!! | GTTGTGGTGGTTTTAGTGAC+TGG | + | chr4.4:4640844-4640863 | None:intergenic | 45.0% |
| AAGGAAGCAACCTTACGTGG+AGG | + | chr4.4:4640767-4640786 | None:intergenic | 50.0% | |
| ACAACCACAACCTCCACGTA+AGG | - | chr4.4:4640754-4640773 | MS.gene20220:CDS | 50.0% | |
| ACGGCATCGTTTCCATTTGG+TGG | + | chr4.4:4641067-4641086 | None:intergenic | 50.0% | |
| AGAATAGGAGGAGGTAGAGC+AGG | + | chr4.4:4640599-4640618 | None:intergenic | 50.0% | |
| AGGATGTGGAGAATAGGAGG+AGG | + | chr4.4:4640608-4640627 | None:intergenic | 50.0% | |
| CTACCCTTCACAAACACCCT+TGG | + | chr4.4:4641277-4641296 | None:intergenic | 50.0% | |
| GCATCGAGGATGTGGAGAAT+AGG | + | chr4.4:4640614-4640633 | None:intergenic | 50.0% | |
| GGTTGAGATTGTGGTTGTGG+TGG | + | chr4.4:4640857-4640876 | None:intergenic | 50.0% | |
| GTGAAGGGTAGGTATTTGGG+TGG | - | chr4.4:4641286-4641305 | MS.gene20220:CDS | 50.0% | |
| GTTCCTTGTTGGGATTGTGG+TGG | - | chr4.4:4641427-4641446 | MS.gene20220:CDS | 50.0% | |
| TAAACGCCATCGAAGAGCCA+TGG | - | chr4.4:4640525-4640544 | MS.gene20220:CDS | 50.0% | |
| TCGAGGATGTGGAGAATAGG+AGG | + | chr4.4:4640611-4640630 | None:intergenic | 50.0% | |
| TGTGTTTGATGAGCGTGACG+TGG | - | chr4.4:4641174-4641193 | MS.gene20220:CDS | 50.0% | |
| ! | TGTTGCGATGGTGGTGATGA+CGG | + | chr4.4:4640737-4640756 | None:intergenic | 50.0% |
| !! | CAAGGGTGTTTGTGAAGGGT+AGG | - | chr4.4:4641275-4641294 | MS.gene20220:CDS | 50.0% |
| !! | CTTGCCAAGGGTGTTTGTGA+AGG | - | chr4.4:4641270-4641289 | MS.gene20220:CDS | 50.0% |
| !! | GAACAGCGGGTTTGAGTTGT+TGG | + | chr4.4:4640682-4640701 | None:intergenic | 50.0% |
| !! | GAGAGAGGTGTTGGAAGACA+AGG | - | chr4.4:4641376-4641395 | MS.gene20220:CDS | 50.0% |
| AATGCGACACGTGTGGAGAG+AGG | - | chr4.4:4641361-4641380 | MS.gene20220:CDS | 55.0% | |
| CTCCCACCACAATCCCAACA+AGG | + | chr4.4:4641433-4641452 | None:intergenic | 55.0% | |
| GCAACCTTACGTGGAGGTTG+TGG | + | chr4.4:4640761-4640780 | None:intergenic | 55.0% | |
| GGAGGTTGTGGTTGTTGCGA+TGG | + | chr4.4:4640749-4640768 | None:intergenic | 55.0% | |
| GGGTAGGTATTTGGGTGGGT+TGG | - | chr4.4:4641291-4641310 | MS.gene20220:CDS | 55.0% | |
| GGTTGTGGTTGTTGCGATGG+TGG | + | chr4.4:4640746-4640765 | None:intergenic | 55.0% | |
| TCGAACACCGCGAAACTCGT+CGG | + | chr4.4:4640503-4640522 | None:intergenic | 55.0% | |
| TCGGAGGAAGAGTTAGGGGT+TGG | - | chr4.4:4641241-4641260 | MS.gene20220:CDS | 55.0% | |
| ! | ACACGTGTGGAGAGAGGTGT+TGG | - | chr4.4:4641367-4641386 | MS.gene20220:CDS | 55.0% |
| ! | GGTGTTGGAAGACAAGGGTG+TGG | - | chr4.4:4641382-4641401 | MS.gene20220:CDS | 55.0% |
| ! | GGTTGGTGTGGTCTTGCCAA+GGG | - | chr4.4:4641258-4641277 | MS.gene20220:CDS | 55.0% |
| ! | GTTGGAAGACAAGGGTGTGG+TGG | - | chr4.4:4641385-4641404 | MS.gene20220:CDS | 55.0% |
| !! | AAGGGTGTGGTGGATGTGGT+GGG | - | chr4.4:4641395-4641414 | MS.gene20220:CDS | 55.0% |
| !! | AGACAAGGGTGTGGTGGATG+TGG | - | chr4.4:4641391-4641410 | MS.gene20220:CDS | 55.0% |
| !! | ATGAAACGGGTCGACTTGGG+AGG | - | chr4.4:4641332-4641351 | MS.gene20220:CDS | 55.0% |
| !! | GGAAGAGTTAGGGGTTGGTG+TGG | - | chr4.4:4641246-4641265 | MS.gene20220:CDS | 55.0% |
| !! | GGGTGGGTTGGAAGAGTTGA+TGG | - | chr4.4:4641303-4641322 | MS.gene20220:CDS | 55.0% |
| !! | GGTGATGGTGGTGTTGGTTG+AGG | + | chr4.4:4640713-4640732 | None:intergenic | 55.0% |
| AACACCGCGAAACTCGTCGG+TGG | + | chr4.4:4640500-4640519 | None:intergenic | 60.0% | |
| GAGCGTGACGTGGCACTTCA+TGG | - | chr4.4:4641184-4641203 | MS.gene20220:CDS | 60.0% | |
| ! | CGTCGGTGGTGGCTGGTATA+CGG | + | chr4.4:4640486-4640505 | None:intergenic | 60.0% |
| !! | AGGGTGTGGTGGATGTGGTG+GGG | - | chr4.4:4641396-4641415 | MS.gene20220:CDS | 60.0% |
| !! | CAAGGGTGTGGTGGATGTGG+TGG | - | chr4.4:4641394-4641413 | MS.gene20220:CDS | 60.0% |
| !! | GACGGTGGTGATGGTGGTGT+TGG | + | chr4.4:4640719-4640738 | None:intergenic | 60.0% |
| !! | GGGTTGGTGTGGTCTTGCCA+AGG | - | chr4.4:4641257-4641276 | MS.gene20220:CDS | 60.0% |
| !! | GGTGATGACGGTGGTGATGG+TGG | + | chr4.4:4640725-4640744 | None:intergenic | 60.0% |
| !! | GGTGGTGATGACGGTGGTGA+TGG | + | chr4.4:4640728-4640747 | None:intergenic | 60.0% |
| !! | TGCGATGGTGGTGATGACGG+TGG | + | chr4.4:4640734-4640753 | None:intergenic | 60.0% |
| ACCGCGAAACTCGTCGGTGG+TGG | + | chr4.4:4640497-4640516 | None:intergenic | 65.0% | |
| GCCACCACCGACGAGTTTCG+CGG | - | chr4.4:4640493-4640512 | MS.gene20220:CDS | 65.0% | |
| TGGCTGGTATACGGCGGGTG+CGG | + | chr4.4:4640477-4640496 | None:intergenic | 65.0% | |
| ! | CGAAACTCGTCGGTGGTGGC+TGG | + | chr4.4:4640493-4640512 | None:intergenic | 65.0% |
| ! | CGGTGGTGGCTGGTATACGG+CGG | + | chr4.4:4640483-4640502 | None:intergenic | 65.0% |
| ! | GGTGGTGGCTGGTATACGGC+GGG | + | chr4.4:4640482-4640501 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4640440 | 4641537 | 4640440 | ID=MS.gene20220 |
| chr4.4 | mRNA | 4640440 | 4641537 | 4640440 | ID=MS.gene20220.t1;Parent=MS.gene20220 |
| chr4.4 | exon | 4640440 | 4641537 | 4640440 | ID=MS.gene20220.t1.exon1;Parent=MS.gene20220.t1 |
| chr4.4 | CDS | 4640440 | 4641537 | 4640440 | ID=cds.MS.gene20220.t1;Parent=MS.gene20220.t1 |
| Gene Sequence |
| Protein sequence |
