Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55342.t1 | XP_024640918.1 | 95.8 | 333 | 14 | 0 | 1 | 333 | 1 | 333 | 1.10E-177 | 632.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55342.t1 | Q67Y99 | 65.8 | 336 | 102 | 4 | 1 | 329 | 1 | 330 | 9.4e-117 | 421.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55342.t1 | A0A396HXQ8 | 95.8 | 333 | 14 | 0 | 1 | 333 | 1 | 333 | 8.1e-178 | 632.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene55342 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene049150 | MS.gene55342 | 0.831605 | 1.52E-55 | -1.69E-46 |
| MS.gene049151 | MS.gene55342 | 0.817511 | 3.18E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene55342 | 0.839823 | 1.26E-57 | -1.69E-46 |
| MS.gene049260 | MS.gene55342 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene55342 | 0.82761 | 1.42E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene55342 | 0.821093 | 4.85E-53 | -1.69E-46 |
| MS.gene049356 | MS.gene55342 | 0.85463 | 1.08E-61 | -1.69E-46 |
| MS.gene049369 | MS.gene55342 | 0.816982 | 4.18E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene55342 | 0.865829 | 4.44E-65 | -1.69E-46 |
| MS.gene049910 | MS.gene55342 | 0.833586 | 4.90E-56 | -1.69E-46 |
| MS.gene050128 | MS.gene55342 | 0.841119 | 5.76E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene55342 | 0.890087 | 1.35E-73 | -1.69E-46 |
| MS.gene050397 | MS.gene55342 | 0.842543 | 2.43E-58 | -1.69E-46 |
| MS.gene050400 | MS.gene55342 | 0.811185 | 7.94E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene55342 | -0.821108 | 4.81E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene55342 | 0.832709 | 8.10E-56 | -1.69E-46 |
| MS.gene050464 | MS.gene55342 | 0.831843 | 1.33E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene55342 | 0.825322 | 4.99E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene55342 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene55342 | 0.808243 | 3.41E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene55342 | 0.861517 | 9.71E-64 | -1.69E-46 |
| MS.gene050812 | MS.gene55342 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene050971 | MS.gene55342 | 0.831961 | 1.24E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene55342 | 0.815134 | 1.08E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene55342 | 0.822816 | 1.93E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene55342 | -0.800821 | 1.20E-48 | -1.69E-46 |
| MS.gene051255 | MS.gene55342 | 0.80361 | 3.21E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene55342 | 0.859865 | 3.08E-63 | -1.69E-46 |
| MS.gene051387 | MS.gene55342 | 0.807869 | 4.09E-50 | -1.69E-46 |
| MS.gene051521 | MS.gene55342 | 0.804614 | 1.98E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene55342 | 0.854482 | 1.20E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene55342 | 0.830072 | 3.61E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene55342 | 0.863289 | 2.77E-64 | -1.69E-46 |
| MS.gene051983 | MS.gene55342 | 0.828118 | 1.07E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene55342 | -0.840524 | 8.26E-58 | -1.69E-46 |
| MS.gene052077 | MS.gene55342 | 0.847158 | 1.38E-59 | -1.69E-46 |
| MS.gene052134 | MS.gene55342 | 0.809073 | 2.27E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene55342 | 0.827505 | 1.51E-54 | -1.69E-46 |
| MS.gene052136 | MS.gene55342 | 0.81457 | 1.44E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene55342 | 0.825839 | 3.77E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene55342 | 0.878538 | 2.59E-69 | -1.69E-46 |
| MS.gene052253 | MS.gene55342 | 0.879748 | 9.67E-70 | -1.69E-46 |
| MS.gene052255 | MS.gene55342 | 0.800805 | 1.21E-48 | -1.69E-46 |
| MS.gene052310 | MS.gene55342 | 0.861939 | 7.21E-64 | -1.69E-46 |
| MS.gene052322 | MS.gene55342 | 0.808873 | 2.50E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene55342 | 0.905325 | 4.84E-80 | -1.69E-46 |
| MS.gene052421 | MS.gene55342 | 0.811688 | 6.18E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene55342 | 0.813806 | 2.12E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene55342 | 0.845512 | 3.88E-59 | -1.69E-46 |
| MS.gene053073 | MS.gene55342 | 0.813708 | 2.23E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene55342 | 0.816933 | 4.28E-52 | -1.69E-46 |
| MS.gene053169 | MS.gene55342 | 0.814532 | 1.47E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene55342 | 0.864516 | 1.15E-64 | -1.69E-46 |
| MS.gene053209 | MS.gene55342 | 0.878615 | 2.43E-69 | -1.69E-46 |
| MS.gene053449 | MS.gene55342 | 0.82603 | 3.39E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene55342 | 0.856894 | 2.36E-62 | -1.69E-46 |
| MS.gene053758 | MS.gene55342 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene55342 | 0.861653 | 8.82E-64 | -1.69E-46 |
| MS.gene053928 | MS.gene55342 | 0.857788 | 1.29E-62 | -1.69E-46 |
| MS.gene054010 | MS.gene55342 | 0.824506 | 7.78E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene55342 | 0.824368 | 8.38E-54 | -1.69E-46 |
| MS.gene054012 | MS.gene55342 | 0.819619 | 1.06E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene55342 | 0.81644 | 5.53E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene55342 | 0.858777 | 6.53E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene55342 | 0.820833 | 5.57E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene55342 | 0.822605 | 2.17E-53 | -1.69E-46 |
| MS.gene054542 | MS.gene55342 | 0.805299 | 1.43E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene55342 | 0.841125 | 5.75E-58 | -1.69E-46 |
| MS.gene05455 | MS.gene55342 | 0.814704 | 1.35E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene55342 | 0.820918 | 5.32E-53 | -1.69E-46 |
| MS.gene054955 | MS.gene55342 | 0.810716 | 1.00E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene55342 | 0.862026 | 6.78E-64 | -1.69E-46 |
| MS.gene055277 | MS.gene55342 | 0.850942 | 1.23E-60 | -1.69E-46 |
| MS.gene055369 | MS.gene55342 | 0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene055390 | MS.gene55342 | 0.837204 | 5.97E-57 | -1.69E-46 |
| MS.gene055412 | MS.gene55342 | 0.819301 | 1.25E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene55342 | 0.84564 | 3.58E-59 | -1.69E-46 |
| MS.gene055428 | MS.gene55342 | 0.819426 | 1.17E-52 | -1.69E-46 |
| MS.gene055539 | MS.gene55342 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene55342 | 0.870997 | 9.56E-67 | -1.69E-46 |
| MS.gene055604 | MS.gene55342 | 0.818486 | 1.91E-52 | -1.69E-46 |
| MS.gene055666 | MS.gene55342 | 0.839371 | 1.65E-57 | -1.69E-46 |
| MS.gene055859 | MS.gene55342 | 0.824485 | 7.87E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene55342 | 0.822973 | 1.78E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene55342 | 0.862487 | 4.89E-64 | -1.69E-46 |
| MS.gene056410 | MS.gene55342 | 0.826421 | 2.74E-54 | -1.69E-46 |
| MS.gene056447 | MS.gene55342 | 0.830064 | 3.62E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene55342 | 0.827175 | 1.81E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene55342 | 0.825307 | 5.03E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene55342 | 0.832413 | 9.59E-56 | -1.69E-46 |
| MS.gene056659 | MS.gene55342 | 0.850888 | 1.27E-60 | -1.69E-46 |
| MS.gene056723 | MS.gene55342 | 0.833213 | 6.07E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene55342 | 0.806045 | 9.95E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene55342 | 0.814539 | 1.46E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene55342 | -0.80375 | 3.00E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene55342 | 0.827962 | 1.17E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene55342 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene55342 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene55342 | 0.837131 | 6.23E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene55342 | 0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene55342 | 0.855835 | 4.83E-62 | -1.69E-46 |
| MS.gene057396 | MS.gene55342 | 0.854288 | 1.36E-61 | -1.69E-46 |
| MS.gene057448 | MS.gene55342 | 0.88168 | 1.96E-70 | -1.69E-46 |
| MS.gene057449 | MS.gene55342 | 0.865558 | 5.41E-65 | -1.69E-46 |
| MS.gene057450 | MS.gene55342 | 0.886652 | 2.84E-72 | -1.69E-46 |
| MS.gene057469 | MS.gene55342 | 0.825133 | 5.53E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene55342 | 0.826081 | 3.30E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene55342 | 0.824938 | 6.15E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene55342 | 0.862633 | 4.41E-64 | -1.69E-46 |
| MS.gene058007 | MS.gene55342 | 0.831331 | 1.77E-55 | -1.69E-46 |
| MS.gene058082 | MS.gene55342 | 0.830073 | 3.61E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene55342 | 0.881198 | 2.93E-70 | -1.69E-46 |
| MS.gene058142 | MS.gene55342 | 0.834816 | 2.41E-56 | -1.69E-46 |
| MS.gene058276 | MS.gene55342 | 0.828458 | 8.89E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene55342 | 0.837153 | 6.15E-57 | -1.69E-46 |
| MS.gene058365 | MS.gene55342 | 0.838437 | 2.88E-57 | -1.69E-46 |
| MS.gene05842 | MS.gene55342 | 0.84464 | 6.67E-59 | -1.69E-46 |
| MS.gene058444 | MS.gene55342 | 0.814916 | 1.21E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene55342 | 0.823041 | 1.71E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene55342 | 0.859283 | 4.60E-63 | -1.69E-46 |
| MS.gene058710 | MS.gene55342 | 0.807294 | 5.42E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene55342 | 0.801195 | 1.01E-48 | -1.69E-46 |
| MS.gene058845 | MS.gene55342 | 0.811265 | 7.63E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene55342 | 0.82009 | 8.24E-53 | -1.69E-46 |
| MS.gene058928 | MS.gene55342 | 0.83259 | 8.67E-56 | -1.69E-46 |
| MS.gene058948 | MS.gene55342 | 0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene55342 | 0.823435 | 1.39E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene55342 | 0.886676 | 2.78E-72 | -1.69E-46 |
| MS.gene059082 | MS.gene55342 | 0.813555 | 2.41E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene55342 | 0.822609 | 2.16E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene55342 | 0.809756 | 1.62E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene55342 | 0.837312 | 5.60E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene55342 | 0.854933 | 8.85E-62 | -1.69E-46 |
| MS.gene059462 | MS.gene55342 | 0.816647 | 4.96E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene55342 | 0.832005 | 1.21E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene55342 | 0.858373 | 8.61E-63 | -1.69E-46 |
| MS.gene05959 | MS.gene55342 | 0.838349 | 3.03E-57 | -1.69E-46 |
| MS.gene059674 | MS.gene55342 | 0.813244 | 2.82E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene55342 | 0.875561 | 2.80E-68 | -1.69E-46 |
| MS.gene059688 | MS.gene55342 | 0.875116 | 3.97E-68 | -1.69E-46 |
| MS.gene059692 | MS.gene55342 | 0.883134 | 5.80E-71 | -1.69E-46 |
| MS.gene059695 | MS.gene55342 | 0.880408 | 5.63E-70 | -1.69E-46 |
| MS.gene059708 | MS.gene55342 | 0.816334 | 5.83E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene55342 | 0.804424 | 2.17E-49 | -1.69E-46 |
| MS.gene059788 | MS.gene55342 | 0.807544 | 4.80E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene55342 | 0.844171 | 8.92E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene55342 | 0.879141 | 1.59E-69 | -1.69E-46 |
| MS.gene059894 | MS.gene55342 | 0.867609 | 1.21E-65 | -1.69E-46 |
| MS.gene059899 | MS.gene55342 | 0.819774 | 9.73E-53 | -1.69E-46 |
| MS.gene060247 | MS.gene55342 | 0.803036 | 4.22E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene55342 | 0.832248 | 1.05E-55 | -1.69E-46 |
| MS.gene060403 | MS.gene55342 | 0.833415 | 5.40E-56 | -1.69E-46 |
| MS.gene060407 | MS.gene55342 | 0.836556 | 8.73E-57 | -1.69E-46 |
| MS.gene060495 | MS.gene55342 | 0.820599 | 6.30E-53 | -1.69E-46 |
| MS.gene060569 | MS.gene55342 | 0.808354 | 3.23E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene55342 | 0.852496 | 4.44E-61 | -1.69E-46 |
| MS.gene060986 | MS.gene55342 | 0.860995 | 1.40E-63 | -1.69E-46 |
| MS.gene061049 | MS.gene55342 | 0.880744 | 4.26E-70 | -1.69E-46 |
| MS.gene061051 | MS.gene55342 | -0.86089 | 1.51E-63 | -1.69E-46 |
| MS.gene061154 | MS.gene55342 | 0.871916 | 4.74E-67 | -1.69E-46 |
| MS.gene061159 | MS.gene55342 | 0.861571 | 9.35E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55342.t1 | MTR_5g043480 | 89.790 | 333 | 14 | 1 | 1 | 333 | 1 | 313 | 0.0 | 595 |
| MS.gene55342.t1 | MTR_5g043480 | 96.269 | 268 | 10 | 0 | 1 | 268 | 1 | 268 | 0.0 | 534 |
| MS.gene55342.t1 | MTR_5g043480 | 92.149 | 242 | 16 | 1 | 92 | 333 | 5 | 243 | 2.63e-157 | 440 |
| MS.gene55342.t1 | MTR_5g043480 | 91.620 | 179 | 13 | 1 | 90 | 268 | 2 | 178 | 1.32e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55342.t1 | AT2G03390 | 65.774 | 336 | 102 | 4 | 1 | 329 | 1 | 330 | 6.44e-158 | 445 |
| MS.gene55342.t1 | AT2G03390 | 65.774 | 336 | 102 | 4 | 1 | 329 | 1 | 330 | 6.44e-158 | 445 |
| MS.gene55342.t1 | AT2G03390 | 76.018 | 221 | 52 | 1 | 109 | 329 | 1 | 220 | 4.33e-126 | 360 |
| MS.gene55342.t1 | AT2G03390 | 63.273 | 275 | 89 | 3 | 1 | 268 | 1 | 270 | 9.78e-117 | 338 |
| MS.gene55342.t1 | AT2G03390 | 63.273 | 275 | 89 | 3 | 1 | 268 | 1 | 270 | 9.78e-117 | 338 |
| MS.gene55342.t1 | AT2G03390 | 61.977 | 263 | 88 | 3 | 1 | 256 | 1 | 258 | 9.63e-108 | 315 |
| MS.gene55342.t1 | AT2G03390 | 61.977 | 263 | 88 | 3 | 1 | 256 | 1 | 258 | 9.63e-108 | 315 |
Find 62 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCCGCAGTTGCTTAAT+AGG | 0.261631 | 5.2:-33212386 | None:intergenic |
| TTGAAGAGTTTAGTGTTTAT+TGG | 0.264698 | 5.2:+33209152 | MS.gene55342:CDS |
| GTAATATGTGATCGTTTAAA+TGG | 0.273515 | 5.2:-33209092 | None:intergenic |
| TGAAGAGTTTAGTGTTTATT+GGG | 0.311579 | 5.2:+33209153 | MS.gene55342:CDS |
| AAGAGACTCTGCTTCAAGTT+TGG | 0.332003 | 5.2:-33210781 | None:intergenic |
| CCACTGGAAAACACTTGGTT+TGG | 0.357930 | 5.2:+33209120 | MS.gene55342:CDS |
| CTTACTTTGTCTGGTTTGTC+AGG | 0.358622 | 5.2:-33212222 | None:intergenic |
| ATAGATGCACTTACTTTGTC+TGG | 0.369403 | 5.2:-33212231 | None:intergenic |
| TTCCCTCCATCTTCGTCACT+TGG | 0.379098 | 5.2:-33212446 | None:intergenic |
| TCTCCCGCAGTTGCTTAATA+GGG | 0.393158 | 5.2:-33212385 | None:intergenic |
| GCACAATATGTCTTCCGCTT+GGG | 0.393631 | 5.2:+33210837 | MS.gene55342:CDS |
| CTTCTTTGCCTCGACACAAA+AGG | 0.407025 | 5.2:-33209179 | None:intergenic |
| AAAGTAAAGCATAAAATGTT+TGG | 0.407562 | 5.2:+33210864 | MS.gene55342:CDS |
| TGCTGCATCAGCTAAAGCTT+TGG | 0.408060 | 5.2:+33210803 | MS.gene55342:CDS |
| CCTCCATCTTCGTCACTTGG+TGG | 0.409997 | 5.2:-33212443 | None:intergenic |
| CCATATGCCACCAGTAGATC+TGG | 0.419863 | 5.2:-33211566 | None:intergenic |
| GAACTTGATTCACTGCATAC+TGG | 0.426333 | 5.2:-33211099 | None:intergenic |
| GAAGTGGGATGGATGTTTAG+AGG | 0.431297 | 5.2:+33209215 | MS.gene55342:CDS |
| TGTGGAAAGAGTAGAATCTA+TGG | 0.432165 | 5.2:+33209056 | MS.gene55342:CDS |
| TATGCAGTGAATCAAGTTCA+TGG | 0.439684 | 5.2:+33211103 | MS.gene55342:CDS |
| TAGAGGTGGAGAACAAGAGT+TGG | 0.460891 | 5.2:+33209232 | MS.gene55342:CDS |
| CTCTAAGTATTATACGTCTT+CGG | 0.463511 | 5.2:+33210435 | MS.gene55342:CDS |
| TGCACAATATGTCTTCCGCT+TGG | 0.468704 | 5.2:+33210836 | MS.gene55342:CDS |
| GCTAATCAAACCTGATAAAA+CGG | 0.469627 | 5.2:-33211171 | None:intergenic |
| CTCCATCTTCGTCACTTGGT+GGG | 0.473073 | 5.2:-33212442 | None:intergenic |
| TTCTTTGCCTCGACACAAAA+GGG | 0.476325 | 5.2:-33209178 | None:intergenic |
| CCAGATCTACTGGTGGCATA+TGG | 0.477740 | 5.2:+33211566 | MS.gene55342:CDS |
| ATCACGTAATTTAGCAGCCA+AGG | 0.491405 | 5.2:-33210751 | None:intergenic |
| TTCGTCACTTGGTGGGTCAA+AGG | 0.495368 | 5.2:-33212435 | None:intergenic |
| ATCTGCCACTGGAAAACACT+TGG | 0.501894 | 5.2:+33209115 | MS.gene55342:CDS |
| CACAATATGTCTTCCGCTTG+GGG | 0.503833 | 5.2:+33210838 | MS.gene55342:CDS |
| TCGTCACTTGGTGGGTCAAA+GGG | 0.504592 | 5.2:-33212434 | None:intergenic |
| TTCTATGGAATGGATTCAGC+TGG | 0.505006 | 5.2:+33212353 | MS.gene55342:CDS |
| TAGAACAGAAAAGACATGTA+GGG | 0.523219 | 5.2:-33212335 | None:intergenic |
| GCGTACTGAACCAGATCTAC+TGG | 0.524216 | 5.2:+33211556 | MS.gene55342:CDS |
| CGAGAATGAAGATTATGCCT+TGG | 0.526531 | 5.2:+33210734 | MS.gene55342:CDS |
| TTTATCGAAGGTTGAAGAAG+AGG | 0.534000 | 5.2:+33210352 | MS.gene55342:intron |
| CATCCCTATTAAGCAACTGC+GGG | 0.535038 | 5.2:+33212382 | MS.gene55342:CDS |
| TGATCGTTTAAATGGCTCAA+AGG | 0.535551 | 5.2:-33209084 | None:intergenic |
| TAGAGCTATAATCGTAGGAA+TGG | 0.538085 | 5.2:+33211074 | MS.gene55342:CDS |
| CAGTGAATCAAGTTCATGGA+TGG | 0.538216 | 5.2:+33211107 | MS.gene55342:CDS |
| GTGGGTCAAAGGGTATTTCG+TGG | 0.539921 | 5.2:-33212424 | None:intergenic |
| GATCGTTTAAATGGCTCAAA+GGG | 0.543938 | 5.2:-33209083 | None:intergenic |
| GGATTTAGCCACAAGAGTGC+AGG | 0.557260 | 5.2:+33209316 | MS.gene55342:CDS |
| ATAGAACAGAAAAGACATGT+AGG | 0.565791 | 5.2:-33212336 | None:intergenic |
| GGCTATAGAGCTATAATCGT+AGG | 0.576059 | 5.2:+33211069 | MS.gene55342:intron |
| TCACATATTACATCTGCCAC+TGG | 0.578536 | 5.2:+33209104 | MS.gene55342:CDS |
| GACCCACCAAGTGACGAAGA+TGG | 0.585639 | 5.2:+33212440 | MS.gene55342:CDS |
| CAGCTACACCTGCACTCTTG+TGG | 0.590788 | 5.2:-33209324 | None:intergenic |
| CACCAAGTGACGAAGATGGA+GGG | 0.603276 | 5.2:+33212444 | MS.gene55342:CDS |
| TCAAAGGGTATTTCGTGGCG+CGG | 0.632604 | 5.2:-33212419 | None:intergenic |
| AGAACAGAAAAGACATGTAG+GGG | 0.640432 | 5.2:-33212334 | None:intergenic |
| AACCTGATAAAACGGTTGAG+TGG | 0.641728 | 5.2:-33211163 | None:intergenic |
| CCACCAAGTGACGAAGATGG+AGG | 0.644237 | 5.2:+33212443 | MS.gene55342:CDS |
| TCATCCCTATTAAGCAACTG+CGG | 0.646965 | 5.2:+33212381 | MS.gene55342:CDS |
| ATGTCAGTGTGCTTTAAACA+TGG | 0.651748 | 5.2:+33209607 | MS.gene55342:intron |
| GCTTTACTTTCTGCCCCAAG+CGG | 0.652168 | 5.2:-33210851 | None:intergenic |
| GTGGGATGGATGTTTAGAGG+TGG | 0.654698 | 5.2:+33209218 | MS.gene55342:CDS |
| TTGAGCACACTAGTAACATG+TGG | 0.661964 | 5.2:+33209038 | MS.gene55342:CDS |
| TACTGAACCAGATCTACTGG+TGG | 0.678822 | 5.2:+33211559 | MS.gene55342:CDS |
| CAAGTTAAGAAGTTGTCTCG+TGG | 0.688846 | 5.2:+33211138 | MS.gene55342:CDS |
| GCTGCGAAACAAACTTACTG+AGG | 0.697627 | 5.2:+33209652 | MS.gene55342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAGTAATAATATTAAT+TGG | - | chr5.2:33212080-33212099 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTGAACA+AGG | - | chr5.2:33211002-33211021 | None:intergenic | 10.0% |
| !! | ATGAATTGTAAATGTATTTA+TGG | + | chr5.2:33211411-33211430 | MS.gene55342:intron | 15.0% |
| !! | CTTATAGAGTTAAAATTATT+CGG | - | chr5.2:33211260-33211279 | None:intergenic | 15.0% |
| !! | TACAATAACAAAAACATATA+AGG | - | chr5.2:33211451-33211470 | None:intergenic | 15.0% |
| !!! | AATAATATTAATTGGTTCAA+TGG | - | chr5.2:33212072-33212091 | None:intergenic | 15.0% |
| !!! | ACTCAAAATGTTTTATATTA+TGG | + | chr5.2:33209470-33209489 | MS.gene55342:intron | 15.0% |
| !!! | TAATAATTTGTTGTATTGAT+AGG | - | chr5.2:33210908-33210927 | None:intergenic | 15.0% |
| !!! | TGTTATTTATGTTCTTTAAT+TGG | + | chr5.2:33212277-33212296 | MS.gene55342:intron | 15.0% |
| !!! | TTAGTCTTTTATATATAACA+TGG | + | chr5.2:33209358-33209377 | MS.gene55342:intron | 15.0% |
| !!! | TTTGTTATTGTATTAATAAC+TGG | + | chr5.2:33211459-33211478 | MS.gene55342:intron | 15.0% |
| !! | AAAGTAAAGCATAAAATGTT+TGG | + | chr5.2:33210864-33210883 | MS.gene55342:CDS | 20.0% |
| !! | ATTTCTTCATCATTTATTCT+AGG | + | chr5.2:33210462-33210481 | MS.gene55342:intron | 20.0% |
| !! | CAAGAAAGAAAAAAAATCAT+TGG | - | chr5.2:33210171-33210190 | None:intergenic | 20.0% |
| !! | CTTTATATTGCAAGAAAATA+CGG | + | chr5.2:33209407-33209426 | MS.gene55342:intron | 20.0% |
| !! | TAAGAAATCTTCCATAAATA+TGG | - | chr5.2:33209561-33209580 | None:intergenic | 20.0% |
| !! | TAAGCAAAAACAATCAAAAA+GGG | + | chr5.2:33210379-33210398 | MS.gene55342:CDS | 20.0% |
| !! | TAATTAGCAACATATTGATA+AGG | + | chr5.2:33210935-33210954 | MS.gene55342:intron | 20.0% |
| !! | TCTTCAATTCTTATTATTAC+TGG | + | chr5.2:33211299-33211318 | MS.gene55342:intron | 20.0% |
| !! | TGATAAATATTGTTTATCGA+AGG | + | chr5.2:33210340-33210359 | MS.gene55342:intron | 20.0% |
| !! | TTAAGCAAAAACAATCAAAA+AGG | + | chr5.2:33210378-33210397 | MS.gene55342:CDS | 20.0% |
| !!! | AAATGAAAATCACATTTTCT+CGG | + | chr5.2:33210081-33210100 | MS.gene55342:intron | 20.0% |
| !!! | ATCATTTTATATTAGGTCAA+AGG | - | chr5.2:33210006-33210025 | None:intergenic | 20.0% |
| !!! | GACTAGAATCATTTTATATT+AGG | - | chr5.2:33210013-33210032 | None:intergenic | 20.0% |
| !!! | TGAATTATTCTGTTTCTATA+TGG | + | chr5.2:33211218-33211237 | MS.gene55342:intron | 20.0% |
| !!! | TTTATCATGGTTTTAAATTG+CGG | - | chr5.2:33209514-33209533 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTGAACAAGG+AGG | - | chr5.2:33210999-33211018 | None:intergenic | 20.0% |
| ! | AACCATGATAAATAGTTAAG+TGG | + | chr5.2:33209522-33209541 | MS.gene55342:intron | 25.0% |
| ! | AAGCAAAAACAATCAAAAAG+GGG | + | chr5.2:33210380-33210399 | MS.gene55342:CDS | 25.0% |
| ! | ATGAAATTATTCATCCAAAC+AGG | - | chr5.2:33211611-33211630 | None:intergenic | 25.0% |
| ! | GAATACAATAACAGTATTAG+TGG | - | chr5.2:33209691-33209710 | None:intergenic | 25.0% |
| ! | GTAATATGTGATCGTTTAAA+TGG | - | chr5.2:33209095-33209114 | None:intergenic | 25.0% |
| ! | TACTAAATGTTGTCAAATAG+TGG | + | chr5.2:33209882-33209901 | MS.gene55342:intron | 25.0% |
| ! | TAGTGTATTTGCCATATTTA+TGG | + | chr5.2:33209547-33209566 | MS.gene55342:intron | 25.0% |
| ! | TATAAGAAAACAGTTTGACT+TGG | - | chr5.2:33211795-33211814 | None:intergenic | 25.0% |
| ! | TGAAATTATTCATCCAAACA+GGG | - | chr5.2:33211610-33211629 | None:intergenic | 25.0% |
| ! | TGAAGAGTTTAGTGTTTATT+GGG | + | chr5.2:33209153-33209172 | MS.gene55342:CDS | 25.0% |
| ! | TTCAAGTATGATGTAGAATT+CGG | + | chr5.2:33209973-33209992 | MS.gene55342:intron | 25.0% |
| ! | TTCTTAATGCTTCATTTGTT+TGG | + | chr5.2:33209575-33209594 | MS.gene55342:intron | 25.0% |
| ! | TTGAAGAGTTTAGTGTTTAT+TGG | + | chr5.2:33209152-33209171 | MS.gene55342:CDS | 25.0% |
| ! | TTTATATTATGGTGCAATTG+CGG | + | chr5.2:33209481-33209500 | MS.gene55342:intron | 25.0% |
| ! | TTTCTGTAAACAAATACATG+TGG | + | chr5.2:33212148-33212167 | MS.gene55342:intron | 25.0% |
| !! | AATATAATGTGAGACTGTTT+TGG | - | chr5.2:33211911-33211930 | None:intergenic | 25.0% |
| !! | ATAAGAAAACAGTTTGACTT+GGG | - | chr5.2:33211794-33211813 | None:intergenic | 25.0% |
| !! | CGTATTTTCTTGCAATATAA+AGG | - | chr5.2:33209409-33209428 | None:intergenic | 25.0% |
| !! | TTCAGATCATCTAATTTTTC+TGG | + | chr5.2:33210286-33210305 | MS.gene55342:intron | 25.0% |
| !!! | TATAACATGGCTTTAAATTG+AGG | + | chr5.2:33209371-33209390 | MS.gene55342:intron | 25.0% |
| !!! | TCATCTAATTTTTCTGGTAT+TGG | + | chr5.2:33210292-33210311 | MS.gene55342:intron | 25.0% |
| AGAACCTAGACATTTGAAAA+AGG | - | chr5.2:33211527-33211546 | None:intergenic | 30.0% | |
| ATAGAACAGAAAAGACATGT+AGG | - | chr5.2:33212339-33212358 | None:intergenic | 30.0% | |
| ATCTGAAAACATATACACGA+AGG | - | chr5.2:33210273-33210292 | None:intergenic | 30.0% | |
| ATGTACAGAAAAGCAATTGT+AGG | - | chr5.2:33212016-33212035 | None:intergenic | 30.0% | |
| ATGTTGTCAATCACAAATTG+CGG | - | chr5.2:33209937-33209956 | None:intergenic | 30.0% | |
| ATTCTAGTCAAATCGAAGTT+TGG | + | chr5.2:33210024-33210043 | MS.gene55342:intron | 30.0% | |
| ATTGTATTCTATACCAAACC+AGG | + | chr5.2:33209702-33209721 | MS.gene55342:intron | 30.0% | |
| CAATTTGTGATTGACAACAT+TGG | + | chr5.2:33209937-33209956 | MS.gene55342:intron | 30.0% | |
| CACCACTTAACTATTTATCA+TGG | - | chr5.2:33209527-33209546 | None:intergenic | 30.0% | |
| CAGTCTCACATTATATTTGA+TGG | + | chr5.2:33211914-33211933 | MS.gene55342:intron | 30.0% | |
| CATCGAGGAATCAAAATATA+AGG | - | chr5.2:33211040-33211059 | None:intergenic | 30.0% | |
| CTCTAAGTATTATACGTCTT+CGG | + | chr5.2:33210435-33210454 | MS.gene55342:CDS | 30.0% | |
| CTTATGGAAAAAGCTGAAAA+CGG | + | chr5.2:33211850-33211869 | MS.gene55342:intron | 30.0% | |
| GAACCTAGACATTTGAAAAA+GGG | - | chr5.2:33211526-33211545 | None:intergenic | 30.0% | |
| GCTAATCAAACCTGATAAAA+CGG | - | chr5.2:33211174-33211193 | None:intergenic | 30.0% | |
| GCTGAATATCTCATAAATGT+GGG | + | chr5.2:33210957-33210976 | MS.gene55342:intron | 30.0% | |
| TAATTGTTCAGACCTTTGAT+TGG | + | chr5.2:33211497-33211516 | MS.gene55342:intron | 30.0% | |
| TAGAACAGAAAAGACATGTA+GGG | - | chr5.2:33212338-33212357 | None:intergenic | 30.0% | |
| TAGACACTATGTAACAACAT+TGG | - | chr5.2:33209804-33209823 | None:intergenic | 30.0% | |
| TCATACAAGGGTAAAAAAAC+AGG | - | chr5.2:33210196-33210215 | None:intergenic | 30.0% | |
| TCTGAAAACATATACACGAA+GGG | - | chr5.2:33210272-33210291 | None:intergenic | 30.0% | |
| ! | AAAAGTATATGTGCGTGTTT+GGG | - | chr5.2:33210139-33210158 | None:intergenic | 30.0% |
| ! | AAGTTATTCTAGAGAGCTTA+TGG | + | chr5.2:33211834-33211853 | MS.gene55342:intron | 30.0% |
| ! | TACATGTCTTTTCTGTTCTA+TGG | + | chr5.2:33212338-33212357 | MS.gene55342:CDS | 30.0% |
| !! | AACTCAGCTATTTTCACATT+TGG | - | chr5.2:33210552-33210571 | None:intergenic | 30.0% |
| !! | TTATCAGGTTTGATTAGCTT+CGG | + | chr5.2:33211176-33211195 | MS.gene55342:intron | 30.0% |
| !!! | AAGTAGTTTTAAGGTTGAAG+TGG | + | chr5.2:33209199-33209218 | MS.gene55342:CDS | 30.0% |
| !!! | AGTAGTTTTAAGGTTGAAGT+GGG | + | chr5.2:33209200-33209219 | MS.gene55342:CDS | 30.0% |
| !!! | CACAAACAACTTGTTACTTT+TGG | + | chr5.2:33211962-33211981 | MS.gene55342:intron | 30.0% |
| !!! | CTTGATGTTCTTTTTTCAAC+TGG | + | chr5.2:33209295-33209314 | MS.gene55342:CDS | 30.0% |
| !!! | TTTCCCTTTTTCAAATGTCT+AGG | + | chr5.2:33211520-33211539 | MS.gene55342:intron | 30.0% |
| !!! | TTTTTTTGAACAAGGAGGAA+AGG | - | chr5.2:33210994-33211013 | None:intergenic | 30.0% |
| AAGCTGACCAACAGATTATA+TGG | - | chr5.2:33210657-33210676 | None:intergenic | 35.0% | |
| AGAACAGAAAAGACATGTAG+GGG | - | chr5.2:33212337-33212356 | None:intergenic | 35.0% | |
| AGTGTCTATACGTTACAACA+TGG | + | chr5.2:33209816-33209835 | MS.gene55342:intron | 35.0% | |
| ATAGATGCACTTACTTTGTC+TGG | - | chr5.2:33212234-33212253 | None:intergenic | 35.0% | |
| ATGAAGTTCCATGTTGTTCT+TGG | + | chr5.2:33212121-33212140 | MS.gene55342:intron | 35.0% | |
| CTTTCCTCCATATAATCTGT+TGG | + | chr5.2:33210647-33210666 | MS.gene55342:intron | 35.0% | |
| GAAAAAGGGAAACCAATCAA+AGG | - | chr5.2:33211512-33211531 | None:intergenic | 35.0% | |
| GAAAGAAACCAAGAACAACA+TGG | - | chr5.2:33212132-33212151 | None:intergenic | 35.0% | |
| GATCGTTTAAATGGCTCAAA+GGG | - | chr5.2:33209086-33209105 | None:intergenic | 35.0% | |
| GGCTGAATATCTCATAAATG+TGG | + | chr5.2:33210956-33210975 | MS.gene55342:intron | 35.0% | |
| GGTTCAATGGTAAATGTAAC+TGG | - | chr5.2:33212059-33212078 | None:intergenic | 35.0% | |
| GTGCTTTATAACTGTTTCCA+GGG | + | chr5.2:33212299-33212318 | MS.gene55342:intron | 35.0% | |
| TAGAGCTATAATCGTAGGAA+TGG | + | chr5.2:33211074-33211093 | MS.gene55342:CDS | 35.0% | |
| TATGCAGTGAATCAAGTTCA+TGG | + | chr5.2:33211103-33211122 | MS.gene55342:CDS | 35.0% | |
| TCACAAATTGCGGAAAATAG+AGG | - | chr5.2:33209927-33209946 | None:intergenic | 35.0% | |
| TGATCGTTTAAATGGCTCAA+AGG | - | chr5.2:33209087-33209106 | None:intergenic | 35.0% | |
| TGTGGAAAGAGTAGAATCTA+TGG | + | chr5.2:33209056-33209075 | MS.gene55342:CDS | 35.0% | |
| TTTATCGAAGGTTGAAGAAG+AGG | + | chr5.2:33210352-33210371 | MS.gene55342:intron | 35.0% | |
| ! | ATGTCAGTGTGCTTTAAACA+TGG | + | chr5.2:33209607-33209626 | MS.gene55342:intron | 35.0% |
| ! | GAAAAGTATATGTGCGTGTT+TGG | - | chr5.2:33210140-33210159 | None:intergenic | 35.0% |
| ! | GTCTTTTCTGTTCTATGGAA+TGG | + | chr5.2:33212343-33212362 | MS.gene55342:CDS | 35.0% |
| ! | TATTACTTTGTTTGCGTTCC+TGG | + | chr5.2:33212088-33212107 | MS.gene55342:intron | 35.0% |
| ! | TGAAAATCACATTTTCTCGG+AGG | + | chr5.2:33210084-33210103 | MS.gene55342:intron | 35.0% |
| ! | TGAGTTGAACTGATGTTTGA+GGG | + | chr5.2:33210566-33210585 | MS.gene55342:intron | 35.0% |
| !! | GAGGCAAAGAAGTAGTTTTA+AGG | + | chr5.2:33209190-33209209 | MS.gene55342:CDS | 35.0% |
| AACCTGATAAAACGGTTGAG+TGG | - | chr5.2:33211166-33211185 | None:intergenic | 40.0% | |
| AACCTGCAGAATAGATCATC+AGG | + | chr5.2:33211331-33211350 | MS.gene55342:intron | 40.0% | |
| AACTTCATACCACAGAAACC+AGG | - | chr5.2:33212109-33212128 | None:intergenic | 40.0% | |
| ACATCTACTTCAAGTAGGTC+TGG | - | chr5.2:33209741-33209760 | None:intergenic | 40.0% | |
| AGTGATTAAGTGTGCGTGTT+TGG | + | chr5.2:33210498-33210517 | MS.gene55342:intron | 40.0% | |
| ATCACGTAATTTAGCAGCCA+AGG | - | chr5.2:33210754-33210773 | None:intergenic | 40.0% | |
| ATCTGAACTGCAAGCGAAAT+TGG | - | chr5.2:33210700-33210719 | None:intergenic | 40.0% | |
| CAAGTTAAGAAGTTGTCTCG+TGG | + | chr5.2:33211138-33211157 | MS.gene55342:CDS | 40.0% | |
| CACACACATCTACTTCAAGT+AGG | - | chr5.2:33209746-33209765 | None:intergenic | 40.0% | |
| CAGTGAATCAAGTTCATGGA+TGG | + | chr5.2:33211107-33211126 | MS.gene55342:CDS | 40.0% | |
| CGAGAATGAAGATTATGCCT+TGG | + | chr5.2:33210734-33210753 | MS.gene55342:CDS | 40.0% | |
| CTCTCGATAACTTGAATCGA+TGG | + | chr5.2:33210223-33210242 | MS.gene55342:intron | 40.0% | |
| CTGACCAACAGATTATATGG+AGG | - | chr5.2:33210654-33210673 | None:intergenic | 40.0% | |
| GAACTTGATTCACTGCATAC+TGG | - | chr5.2:33211102-33211121 | None:intergenic | 40.0% | |
| GAGTTGAACTGATGTTTGAG+GGG | + | chr5.2:33210567-33210586 | MS.gene55342:intron | 40.0% | |
| GGCTATAGAGCTATAATCGT+AGG | + | chr5.2:33211069-33211088 | MS.gene55342:intron | 40.0% | |
| GGTGCTTTATAACTGTTTCC+AGG | + | chr5.2:33212298-33212317 | MS.gene55342:intron | 40.0% | |
| GTATTCTATACCAAACCAGG+TGG | + | chr5.2:33209705-33209724 | MS.gene55342:intron | 40.0% | |
| TAAAACAAGCTCACTTGAGC+TGG | + | chr5.2:33210612-33210631 | MS.gene55342:intron | 40.0% | |
| TAAACACAATCCACCTGGTT+TGG | - | chr5.2:33209718-33209737 | None:intergenic | 40.0% | |
| TATGTGCGTGTTTGGGTAAA+TGG | - | chr5.2:33210132-33210151 | None:intergenic | 40.0% | |
| TCACATATTACATCTGCCAC+TGG | + | chr5.2:33209104-33209123 | MS.gene55342:CDS | 40.0% | |
| TCATCCCTATTAAGCAACTG+CGG | + | chr5.2:33212381-33212400 | MS.gene55342:CDS | 40.0% | |
| TGAATCGATGGCAAGTGTAT+TGG | + | chr5.2:33210235-33210254 | MS.gene55342:intron | 40.0% | |
| TGTATTCCTCTCAAGGTCTT+AGG | - | chr5.2:33211762-33211781 | None:intergenic | 40.0% | |
| TTCTTTGCCTCGACACAAAA+GGG | - | chr5.2:33209181-33209200 | None:intergenic | 40.0% | |
| TTGAGCACACTAGTAACATG+TGG | + | chr5.2:33209038-33209057 | MS.gene55342:CDS | 40.0% | |
| ! | AAGAGACTCTGCTTCAAGTT+TGG | - | chr5.2:33210784-33210803 | None:intergenic | 40.0% |
| ! | ATTCAAGTTATCGAGAGGCT+AGG | - | chr5.2:33210220-33210239 | None:intergenic | 40.0% |
| ! | ATTTTCACATTTGGACGCTC+TGG | - | chr5.2:33210543-33210562 | None:intergenic | 40.0% |
| ! | CTGAGTTGAACTGATGTTTG+AGG | + | chr5.2:33210565-33210584 | MS.gene55342:intron | 40.0% |
| ! | CTTACTTTGTCTGGTTTGTC+AGG | - | chr5.2:33212225-33212244 | None:intergenic | 40.0% |
| ! | TACCACTCAACCGTTTTATC+AGG | + | chr5.2:33211161-33211180 | MS.gene55342:CDS | 40.0% |
| ! | TTATAGCTCTATAGCCTGCA+CGG | - | chr5.2:33211065-33211084 | None:intergenic | 40.0% |
| ! | TTCAAGTTATCGAGAGGCTA+GGG | - | chr5.2:33210219-33210238 | None:intergenic | 40.0% |
| ! | TTCTATGGAATGGATTCAGC+TGG | + | chr5.2:33212353-33212372 | MS.gene55342:CDS | 40.0% |
| !! | CATCGATTCAAGTTATCGAG+AGG | - | chr5.2:33210225-33210244 | None:intergenic | 40.0% |
| !! | TCTGGTATTGGAGCATTGAA+TGG | + | chr5.2:33210304-33210323 | MS.gene55342:intron | 40.0% |
| !!! | GTTTTAAGGTTGAAGTGGGA+TGG | + | chr5.2:33209204-33209223 | MS.gene55342:CDS | 40.0% |
| ATCGAACCTAAGACCTTGAG+AGG | + | chr5.2:33211753-33211772 | MS.gene55342:intron | 45.0% | |
| ATCTGCCACTGGAAAACACT+TGG | + | chr5.2:33209115-33209134 | MS.gene55342:CDS | 45.0% | |
| CACAATATGTCTTCCGCTTG+GGG | + | chr5.2:33210838-33210857 | MS.gene55342:CDS | 45.0% | |
| CATCCCTATTAAGCAACTGC+GGG | + | chr5.2:33212382-33212401 | MS.gene55342:CDS | 45.0% | |
| CCACTGGAAAACACTTGGTT+TGG | + | chr5.2:33209120-33209139 | MS.gene55342:CDS | 45.0% | |
| CTCTGCAACTGCAAAAGAGA+AGG | - | chr5.2:33212187-33212206 | None:intergenic | 45.0% | |
| CTGGATTACTAAGCCCTGTT+TGG | + | chr5.2:33211594-33211613 | MS.gene55342:intron | 45.0% | |
| CTTCTTTGCCTCGACACAAA+AGG | - | chr5.2:33209182-33209201 | None:intergenic | 45.0% | |
| CTTGAGAGGAATACAGTCCA+AGG | + | chr5.2:33211767-33211786 | MS.gene55342:intron | 45.0% | |
| CTTGGACTGTATTCCTCTCA+AGG | - | chr5.2:33211769-33211788 | None:intergenic | 45.0% | |
| GAAGTGGGATGGATGTTTAG+AGG | + | chr5.2:33209215-33209234 | MS.gene55342:CDS | 45.0% | |
| GCACAATATGTCTTCCGCTT+GGG | + | chr5.2:33210837-33210856 | MS.gene55342:CDS | 45.0% | |
| GCTGCGAAACAAACTTACTG+AGG | + | chr5.2:33209652-33209671 | MS.gene55342:CDS | 45.0% | |
| GTGCGTGTTTGGTTATGCAT+TGG | + | chr5.2:33210509-33210528 | MS.gene55342:intron | 45.0% | |
| TACTGAACCAGATCTACTGG+TGG | + | chr5.2:33211559-33211578 | MS.gene55342:CDS | 45.0% | |
| TAGAGGTGGAGAACAAGAGT+TGG | + | chr5.2:33209232-33209251 | MS.gene55342:CDS | 45.0% | |
| TCTCCCGCAGTTGCTTAATA+GGG | - | chr5.2:33212388-33212407 | None:intergenic | 45.0% | |
| TCTGGTAAACACAATCCACC+TGG | - | chr5.2:33209723-33209742 | None:intergenic | 45.0% | |
| TGAACTGATGTTTGAGGGGT+TGG | + | chr5.2:33210571-33210590 | MS.gene55342:intron | 45.0% | |
| TGCAAGAAAATACGGCTGTG+CGG | + | chr5.2:33209415-33209434 | MS.gene55342:intron | 45.0% | |
| TGCACAATATGTCTTCCGCT+TGG | + | chr5.2:33210836-33210855 | MS.gene55342:CDS | 45.0% | |
| TGCCTGATGATCTATTCTGC+AGG | - | chr5.2:33211336-33211355 | None:intergenic | 45.0% | |
| TGCGTGTTTGGGTAAATGGT+GGG | - | chr5.2:33210128-33210147 | None:intergenic | 45.0% | |
| TGCTGCATCAGCTAAAGCTT+TGG | + | chr5.2:33210803-33210822 | MS.gene55342:CDS | 45.0% | |
| TTCTCCCGCAGTTGCTTAAT+AGG | - | chr5.2:33212389-33212408 | None:intergenic | 45.0% | |
| ! | ATTCTCCCTGGTGCCAATTT+CGG | - | chr5.2:33211735-33211754 | None:intergenic | 45.0% |
| ! | CCAAACCAAGTGTTTTCCAG+TGG | - | chr5.2:33209123-33209142 | None:intergenic | 45.0% |
| ! | CTTCTCTTTTGCAGTTGCAG+AGG | + | chr5.2:33212185-33212204 | MS.gene55342:intron | 45.0% |
| ! | TCGATGGCAAGTGTATTGGT+CGG | + | chr5.2:33210239-33210258 | MS.gene55342:intron | 45.0% |
| !! | AACAGTTTGACTTGGGACCT+TGG | - | chr5.2:33211787-33211806 | None:intergenic | 45.0% |
| AGGGGTGATCAAATCTTCCC+TGG | - | chr5.2:33212319-33212338 | None:intergenic | 50.0% | |
| CACCAAGTGACGAAGATGGA+GGG | + | chr5.2:33212444-33212463 | MS.gene55342:CDS | 50.0% | |
| CCAAACTAGCCCACCGAAAT+TGG | + | chr5.2:33211719-33211738 | MS.gene55342:intron | 50.0% | |
| CCAGATCTACTGGTGGCATA+TGG | + | chr5.2:33211566-33211585 | MS.gene55342:CDS | 50.0% | |
| CCATATGCCACCAGTAGATC+TGG | - | chr5.2:33211569-33211588 | None:intergenic | 50.0% | |
| CTCCATCTTCGTCACTTGGT+GGG | - | chr5.2:33212445-33212464 | None:intergenic | 50.0% | |
| CTGGTGGCATATGGTAAAGC+TGG | + | chr5.2:33211575-33211594 | MS.gene55342:intron | 50.0% | |
| GAGAGGCTAGGGTCATACAA+GGG | - | chr5.2:33210208-33210227 | None:intergenic | 50.0% | |
| GCGTACTGAACCAGATCTAC+TGG | + | chr5.2:33211556-33211575 | MS.gene55342:CDS | 50.0% | |
| GCGTGTTTGGGTAAATGGTG+GGG | - | chr5.2:33210127-33210146 | None:intergenic | 50.0% | |
| GCTTTACTTTCTGCCCCAAG+CGG | - | chr5.2:33210854-33210873 | None:intergenic | 50.0% | |
| GTCTTAGGTTCGATTCTCCC+TGG | - | chr5.2:33211747-33211766 | None:intergenic | 50.0% | |
| GTGCGTGTTTGGGTAAATGG+TGG | - | chr5.2:33210129-33210148 | None:intergenic | 50.0% | |
| GTGGGATGGATGTTTAGAGG+TGG | + | chr5.2:33209218-33209237 | MS.gene55342:CDS | 50.0% | |
| GTTTGCGTTCCTGGTTTCTG+TGG | + | chr5.2:33212097-33212116 | MS.gene55342:intron | 50.0% | |
| TTCCCTCCATCTTCGTCACT+TGG | - | chr5.2:33212449-33212468 | None:intergenic | 50.0% | |
| ! | GGATTTAGCCACAAGAGTGC+AGG | + | chr5.2:33209316-33209335 | MS.gene55342:CDS | 50.0% |
| ! | TCGTCACTTGGTGGGTCAAA+GGG | - | chr5.2:33212437-33212456 | None:intergenic | 50.0% |
| ! | TTCGTCACTTGGTGGGTCAA+AGG | - | chr5.2:33212438-33212457 | None:intergenic | 50.0% |
| ! | TTGGGTACCCTTTTGTGTCG+AGG | + | chr5.2:33209171-33209190 | MS.gene55342:CDS | 50.0% |
| !! | CCAATTTCGGTGGGCTAGTT+TGG | - | chr5.2:33211722-33211741 | None:intergenic | 50.0% |
| !! | GTGGGTCAAAGGGTATTTCG+TGG | - | chr5.2:33212427-33212446 | None:intergenic | 50.0% |
| !! | TCAAAGGGTATTTCGTGGCG+CGG | - | chr5.2:33212422-33212441 | None:intergenic | 50.0% |
| ATAGCCTGCACGGTACATCG+AGG | - | chr5.2:33211055-33211074 | None:intergenic | 55.0% | |
| CAGCTACACCTGCACTCTTG+TGG | - | chr5.2:33209327-33209346 | None:intergenic | 55.0% | |
| CCACCAAGTGACGAAGATGG+AGG | + | chr5.2:33212443-33212462 | MS.gene55342:CDS | 55.0% | |
| CCTCCATCTTCGTCACTTGG+TGG | - | chr5.2:33212446-33212465 | None:intergenic | 55.0% | |
| CGAGAGGCTAGGGTCATACA+AGG | - | chr5.2:33210209-33210228 | None:intergenic | 55.0% | |
| CGGCTGTGCGGTTGAAATTG+TGG | + | chr5.2:33209427-33209446 | MS.gene55342:intron | 55.0% | |
| GACCCACCAAGTGACGAAGA+TGG | + | chr5.2:33212440-33212459 | MS.gene55342:CDS | 55.0% | |
| GATTCCTCGATGTACCGTGC+AGG | + | chr5.2:33211048-33211067 | MS.gene55342:intron | 55.0% | |
| TTGTGGTCGCAACGCTGATG+TGG | + | chr5.2:33209444-33209463 | MS.gene55342:intron | 55.0% | |
| ! | TCCCTGGTGCCAATTTCGGT+GGG | - | chr5.2:33211731-33211750 | None:intergenic | 55.0% |
| AGCCCACCGAAATTGGCACC+AGG | + | chr5.2:33211726-33211745 | MS.gene55342:intron | 60.0% | |
| GCCCACCGAAATTGGCACCA+GGG | + | chr5.2:33211727-33211746 | MS.gene55342:intron | 60.0% | |
| ! | CTCCCTGGTGCCAATTTCGG+TGG | - | chr5.2:33211732-33211751 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 33209020 | 33212475 | 33209020 | ID=MS.gene55342 |
| chr5.2 | mRNA | 33209020 | 33212475 | 33209020 | ID=MS.gene55342.t1;Parent=MS.gene55342 |
| chr5.2 | exon | 33209020 | 33209337 | 33209020 | ID=MS.gene55342.t1.exon1;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33209020 | 33209337 | 33209020 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| chr5.2 | exon | 33209614 | 33209673 | 33209614 | ID=MS.gene55342.t1.exon2;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33209614 | 33209673 | 33209614 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| chr5.2 | exon | 33210362 | 33210456 | 33210362 | ID=MS.gene55342.t1.exon3;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33210362 | 33210456 | 33210362 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| chr5.2 | exon | 33210713 | 33210885 | 33210713 | ID=MS.gene55342.t1.exon4;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33210713 | 33210885 | 33210713 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| chr5.2 | exon | 33211070 | 33211182 | 33211070 | ID=MS.gene55342.t1.exon5;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33211070 | 33211182 | 33211070 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| chr5.2 | exon | 33211542 | 33211587 | 33211542 | ID=MS.gene55342.t1.exon6;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33211542 | 33211587 | 33211542 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| chr5.2 | exon | 33212199 | 33212239 | 33212199 | ID=MS.gene55342.t1.exon7;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33212199 | 33212239 | 33212199 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| chr5.2 | exon | 33212320 | 33212475 | 33212320 | ID=MS.gene55342.t1.exon8;Parent=MS.gene55342.t1 |
| chr5.2 | CDS | 33212320 | 33212475 | 33212320 | ID=cds.MS.gene55342.t1;Parent=MS.gene55342.t1 |
| Gene Sequence |
| Protein sequence |
