Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62188.t1 | XP_024635440.1 | 96.8 | 188 | 6 | 0 | 1 | 188 | 1 | 188 | 4.40E-46 | 194.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62188.t1 | O22160 | 51.5 | 103 | 48 | 2 | 1 | 102 | 1 | 102 | 1.5e-13 | 77.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62188.t1 | A0A072V034 | 94.1 | 102 | 6 | 0 | 1 | 102 | 1 | 102 | 4.3e-43 | 184.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene62188 | 0.80566 | 1.20E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene62188 | 0.825753 | 3.95E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene62188 | 0.836421 | 9.45E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene62188 | 0.818491 | 1.91E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene62188 | 0.828277 | 9.83E-55 | -1.69E-46 |
| MS.gene049351 | MS.gene62188 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene62188 | 0.867076 | 1.79E-65 | -1.69E-46 |
| MS.gene049491 | MS.gene62188 | 0.800248 | 1.58E-48 | -1.69E-46 |
| MS.gene049609 | MS.gene62188 | 0.822463 | 2.34E-53 | -1.69E-46 |
| MS.gene049614 | MS.gene62188 | 0.809336 | 1.99E-50 | -1.69E-46 |
| MS.gene049615 | MS.gene62188 | 0.815796 | 7.69E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene62188 | 0.840224 | 9.89E-58 | -1.69E-46 |
| MS.gene049662 | MS.gene62188 | 0.837429 | 5.23E-57 | -1.69E-46 |
| MS.gene049760 | MS.gene62188 | 0.843217 | 1.60E-58 | -1.69E-46 |
| MS.gene049805 | MS.gene62188 | 0.818956 | 1.50E-52 | -1.69E-46 |
| MS.gene049828 | MS.gene62188 | 0.811761 | 5.96E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene62188 | 0.880755 | 4.23E-70 | -1.69E-46 |
| MS.gene050163 | MS.gene62188 | 0.851916 | 6.50E-61 | -1.69E-46 |
| MS.gene050165 | MS.gene62188 | 0.825079 | 5.70E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene62188 | 0.821948 | 3.08E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene62188 | 0.801133 | 1.04E-48 | -1.69E-46 |
| MS.gene050353 | MS.gene62188 | -0.815456 | 9.16E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene62188 | 0.815404 | 9.41E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene62188 | 0.870818 | 1.09E-66 | -1.69E-46 |
| MS.gene050529 | MS.gene62188 | 0.804671 | 1.93E-49 | -1.69E-46 |
| MS.gene050538 | MS.gene62188 | 0.821031 | 5.01E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene62188 | 0.821752 | 3.42E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene62188 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene62188 | 0.885913 | 5.40E-72 | -1.69E-46 |
| MS.gene050770 | MS.gene62188 | 0.887287 | 1.63E-72 | -1.69E-46 |
| MS.gene050772 | MS.gene62188 | 0.835251 | 1.87E-56 | -1.69E-46 |
| MS.gene050781 | MS.gene62188 | 0.817462 | 3.26E-52 | -1.69E-46 |
| MS.gene050783 | MS.gene62188 | 0.867589 | 1.22E-65 | -1.69E-46 |
| MS.gene050950 | MS.gene62188 | 0.818195 | 2.22E-52 | -1.69E-46 |
| MS.gene05100 | MS.gene62188 | 0.852339 | 4.92E-61 | -1.69E-46 |
| MS.gene05101 | MS.gene62188 | 0.863908 | 1.78E-64 | -1.69E-46 |
| MS.gene05105 | MS.gene62188 | 0.821112 | 4.80E-53 | -1.69E-46 |
| MS.gene051228 | MS.gene62188 | 0.858989 | 5.64E-63 | -1.69E-46 |
| MS.gene051387 | MS.gene62188 | 0.829118 | 6.15E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene62188 | 0.817366 | 3.42E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene62188 | 0.876147 | 1.76E-68 | -1.69E-46 |
| MS.gene051692 | MS.gene62188 | 0.809457 | 1.87E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene62188 | 0.819944 | 8.90E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene62188 | 0.820973 | 5.17E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene62188 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene62188 | 0.80864 | 2.80E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene62188 | 0.847946 | 8.38E-60 | -1.69E-46 |
| MS.gene052271 | MS.gene62188 | 0.831616 | 1.51E-55 | -1.69E-46 |
| MS.gene052290 | MS.gene62188 | 0.871763 | 5.33E-67 | -1.69E-46 |
| MS.gene052310 | MS.gene62188 | 0.818492 | 1.91E-52 | -1.69E-46 |
| MS.gene052322 | MS.gene62188 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene62188 | 0.858047 | 1.08E-62 | -1.69E-46 |
| MS.gene052379 | MS.gene62188 | 0.84597 | 2.91E-59 | -1.69E-46 |
| MS.gene052484 | MS.gene62188 | 0.818717 | 1.69E-52 | -1.69E-46 |
| MS.gene052510 | MS.gene62188 | 0.80152 | 8.66E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene62188 | 0.864267 | 1.38E-64 | -1.69E-46 |
| MS.gene053103 | MS.gene62188 | 0.859988 | 2.83E-63 | -1.69E-46 |
| MS.gene053104 | MS.gene62188 | 0.879875 | 8.72E-70 | -1.69E-46 |
| MS.gene053107 | MS.gene62188 | 0.851036 | 1.15E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene62188 | 0.848098 | 7.61E-60 | -1.69E-46 |
| MS.gene053209 | MS.gene62188 | 0.833063 | 6.61E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene62188 | 0.852183 | 5.46E-61 | -1.69E-46 |
| MS.gene053286 | MS.gene62188 | 0.843107 | 1.72E-58 | -1.69E-46 |
| MS.gene053322 | MS.gene62188 | 0.895851 | 6.47E-76 | -1.69E-46 |
| MS.gene053574 | MS.gene62188 | 0.802822 | 4.67E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene62188 | 0.845834 | 3.17E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene62188 | 0.823244 | 1.54E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene62188 | 0.89181 | 2.83E-74 | -1.69E-46 |
| MS.gene05455 | MS.gene62188 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene62188 | 0.82328 | 1.51E-53 | -1.69E-46 |
| MS.gene054642 | MS.gene62188 | 0.852981 | 3.23E-61 | -1.69E-46 |
| MS.gene054802 | MS.gene62188 | 0.877489 | 6.03E-69 | -1.69E-46 |
| MS.gene054803 | MS.gene62188 | 0.879059 | 1.70E-69 | -1.69E-46 |
| MS.gene054804 | MS.gene62188 | 0.881459 | 2.36E-70 | -1.69E-46 |
| MS.gene054927 | MS.gene62188 | 0.803315 | 3.70E-49 | -1.69E-46 |
| MS.gene054955 | MS.gene62188 | 0.806421 | 8.30E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene62188 | 0.801984 | 6.96E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene62188 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene62188 | 0.80819 | 3.50E-50 | -1.69E-46 |
| MS.gene055212 | MS.gene62188 | 0.825897 | 3.65E-54 | -1.69E-46 |
| MS.gene055254 | MS.gene62188 | 0.886295 | 3.87E-72 | -1.69E-46 |
| MS.gene055277 | MS.gene62188 | 0.83244 | 9.44E-56 | -1.69E-46 |
| MS.gene055289 | MS.gene62188 | 0.808711 | 2.71E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene62188 | 0.814113 | 1.82E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene62188 | 0.806378 | 8.47E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene62188 | 0.884663 | 1.58E-71 | -1.69E-46 |
| MS.gene055412 | MS.gene62188 | 0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene62188 | 0.810382 | 1.19E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene62188 | 0.80739 | 5.18E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene62188 | 0.914372 | 2.07E-84 | -1.69E-46 |
| MS.gene055647 | MS.gene62188 | 0.847537 | 1.09E-59 | -1.69E-46 |
| MS.gene055722 | MS.gene62188 | 0.828161 | 1.05E-54 | -1.69E-46 |
| MS.gene055896 | MS.gene62188 | 0.846093 | 2.70E-59 | -1.69E-46 |
| MS.gene05592 | MS.gene62188 | 0.861719 | 8.42E-64 | -1.69E-46 |
| MS.gene05602 | MS.gene62188 | 0.81602 | 6.86E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene62188 | 0.853961 | 1.69E-61 | -1.69E-46 |
| MS.gene056374 | MS.gene62188 | 0.85268 | 3.94E-61 | -1.69E-46 |
| MS.gene056407 | MS.gene62188 | 0.838343 | 3.04E-57 | -1.69E-46 |
| MS.gene056410 | MS.gene62188 | 0.840524 | 8.26E-58 | -1.69E-46 |
| MS.gene056609 | MS.gene62188 | 0.844267 | 8.41E-59 | -1.69E-46 |
| MS.gene056612 | MS.gene62188 | 0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene62188 | 0.833415 | 5.40E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene62188 | 0.806085 | 9.76E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene62188 | 0.818827 | 1.60E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene62188 | 0.858556 | 7.60E-63 | -1.69E-46 |
| MS.gene05702 | MS.gene62188 | 0.810006 | 1.43E-50 | -1.69E-46 |
| MS.gene057123 | MS.gene62188 | 0.827795 | 1.28E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene62188 | 0.904428 | 1.24E-79 | -1.69E-46 |
| MS.gene057146 | MS.gene62188 | 0.846192 | 2.53E-59 | -1.69E-46 |
| MS.gene057246 | MS.gene62188 | 0.841074 | 5.93E-58 | -1.69E-46 |
| MS.gene057295 | MS.gene62188 | 0.861017 | 1.38E-63 | -1.69E-46 |
| MS.gene057331 | MS.gene62188 | 0.846964 | 1.56E-59 | -1.69E-46 |
| MS.gene05735 | MS.gene62188 | 0.816785 | 4.62E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene62188 | 0.864054 | 1.60E-64 | -1.69E-46 |
| MS.gene058006 | MS.gene62188 | 0.804361 | 2.24E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene62188 | 0.848556 | 5.69E-60 | -1.69E-46 |
| MS.gene058082 | MS.gene62188 | 0.85142 | 8.98E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene62188 | 0.816345 | 5.80E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene62188 | 0.870138 | 1.83E-66 | -1.69E-46 |
| MS.gene058323 | MS.gene62188 | 0.859954 | 2.89E-63 | -1.69E-46 |
| MS.gene058419 | MS.gene62188 | 0.824581 | 7.47E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene62188 | 0.812586 | 3.94E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene62188 | 0.886468 | 3.33E-72 | -1.69E-46 |
| MS.gene058723 | MS.gene62188 | 0.846254 | 2.44E-59 | -1.69E-46 |
| MS.gene058773 | MS.gene62188 | 0.820188 | 7.83E-53 | -1.69E-46 |
| MS.gene058787 | MS.gene62188 | 0.823253 | 1.53E-53 | -1.69E-46 |
| MS.gene059029 | MS.gene62188 | 0.837701 | 4.45E-57 | -1.69E-46 |
| MS.gene059326 | MS.gene62188 | 0.805341 | 1.40E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene62188 | 0.833039 | 6.71E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene62188 | 0.887764 | 1.07E-72 | -1.69E-46 |
| MS.gene059597 | MS.gene62188 | 0.817903 | 2.59E-52 | -1.69E-46 |
| MS.gene05959 | MS.gene62188 | 0.808485 | 3.03E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene62188 | 0.821472 | 3.97E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene62188 | 0.820393 | 7.02E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene62188 | 0.843591 | 1.28E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene62188 | 0.838238 | 3.24E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene62188 | 0.83922 | 1.80E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene62188 | 0.831986 | 1.22E-55 | -1.69E-46 |
| MS.gene059858 | MS.gene62188 | 0.815347 | 9.68E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene62188 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene62188 | 0.906457 | 1.45E-80 | -1.69E-46 |
| MS.gene060193 | MS.gene62188 | 0.818149 | 2.28E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene62188 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene62188 | 0.88716 | 1.82E-72 | -1.69E-46 |
| MS.gene060818 | MS.gene62188 | 0.833759 | 4.43E-56 | -1.69E-46 |
| MS.gene06092 | MS.gene62188 | 0.824194 | 9.21E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene62188 | 0.852769 | 3.71E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene62188 | -0.84163 | 4.23E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene62188 | 0.835263 | 1.86E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene62188 | 0.901246 | 3.25E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62188.t1 | MTR_3g068150 | 96.791 | 187 | 6 | 0 | 1 | 187 | 1 | 187 | 2.19e-126 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62188.t1 | AT2G44920 | 86.331 | 139 | 19 | 0 | 50 | 188 | 50 | 188 | 2.89e-81 | 240 |
| MS.gene62188.t1 | AT2G44920 | 86.232 | 138 | 19 | 0 | 50 | 187 | 50 | 187 | 2.47e-80 | 238 |
Find 44 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCTATCTCTCTGTTTC+TGG | 0.179667 | 3.2:-62821722 | MS.gene62188:intron |
| TTTAAAGGTGCAAAATTATT+AGG | 0.209764 | 3.2:-62820946 | MS.gene62188:CDS |
| ACTAGGGGACAAGATCTTTC+TGG | 0.219620 | 3.2:-62821167 | MS.gene62188:CDS |
| AAATTTGAGCAATGCTAATT+TGG | 0.246193 | 3.2:-62820153 | MS.gene62188:CDS |
| CATACCGGCGCCTGTAATAT+TGG | 0.263857 | 3.2:+62820091 | None:intergenic |
| TTCTTTGATGCTGATTTAAC+AGG | 0.300432 | 3.2:-62820916 | MS.gene62188:intron |
| AAAATTGGCTTGACGCAGTA+TGG | 0.314554 | 3.2:+62820966 | None:intergenic |
| TTTAAGGGATCCAATATTAC+AGG | 0.328394 | 3.2:-62820101 | MS.gene62188:CDS |
| TGATCCTGCACTTGCATTCA+AGG | 0.342254 | 3.2:-62821502 | MS.gene62188:intron |
| GATGCTTGGTGAGTTTGCTT+TGG | 0.375494 | 3.2:+62821606 | None:intergenic |
| TAAGAGATGGTGATGAGGTT+TGG | 0.381918 | 3.2:+62821777 | None:intergenic |
| CATATGGTCAAGGAGTTACT+AGG | 0.385923 | 3.2:-62821184 | MS.gene62188:CDS |
| TGGTGATGAATGCAGGGTGG+AGG | 0.398777 | 3.2:-62821209 | MS.gene62188:intron |
| CTAGTAACTCCTTGACCATA+TGG | 0.403791 | 3.2:+62821185 | None:intergenic |
| CATGTCAGGTGCTGATCTTT+CGG | 0.407019 | 3.2:-62820801 | MS.gene62188:intron |
| TTGGAAGGTGCACTTGTAAC+GGG | 0.417101 | 3.2:-62820134 | MS.gene62188:CDS |
| CTAGGGGACAAGATCTTTCT+GGG | 0.423220 | 3.2:-62821166 | MS.gene62188:CDS |
| CGAACCAGAAACAGAGAGAT+AGG | 0.437434 | 3.2:+62821718 | None:intergenic |
| AACCTCATCACCATCTCTTA+AGG | 0.447203 | 3.2:-62821774 | MS.gene62188:CDS |
| AGAGATAGGAGTTGGTGAGC+AGG | 0.464069 | 3.2:+62821732 | None:intergenic |
| ATGCAGGGTGGAGGGCCATA+TGG | 0.478492 | 3.2:-62821200 | MS.gene62188:intron |
| TTACCTTTGTCACATTTGCC+AGG | 0.489767 | 3.2:+62820750 | None:intergenic |
| AGTTGGTGAGCAGGTTGAAG+AGG | 0.491050 | 3.2:+62821741 | None:intergenic |
| GGTGAGCAGGTTGAAGAGGA+AGG | 0.497485 | 3.2:+62821745 | None:intergenic |
| CAGAAACTCACATTATCATT+CGG | 0.504813 | 3.2:-62821582 | MS.gene62188:CDS |
| TTTGGAAGGTGCACTTGTAA+CGG | 0.505123 | 3.2:-62820135 | MS.gene62188:CDS |
| TTGAGCAATGCTAATTTGGA+AGG | 0.506866 | 3.2:-62820149 | MS.gene62188:CDS |
| AGAAACAGAGAGATAGGAGT+TGG | 0.558423 | 3.2:+62821724 | None:intergenic |
| TGATGAGGTTTGGAAGTTGA+AGG | 0.562107 | 3.2:+62821787 | None:intergenic |
| ATATGGTCAAGGAGTTACTA+GGG | 0.565044 | 3.2:-62821183 | MS.gene62188:CDS |
| TATACCTTGAATGCAAGTGC+AGG | 0.570494 | 3.2:+62821498 | None:intergenic |
| GGTGATGAATGCAGGGTGGA+GGG | 0.574556 | 3.2:-62821208 | MS.gene62188:intron |
| GGATCCAATATTACAGGCGC+CGG | 0.582010 | 3.2:-62820095 | MS.gene62188:CDS |
| GGTGGAGGGCCATATGGTCA+AGG | 0.584439 | 3.2:-62821194 | MS.gene62188:CDS |
| TACCTTTGTCACATTTGCCA+GGG | 0.587787 | 3.2:+62820751 | None:intergenic |
| TTCCCTGGCAAATGTGACAA+AGG | 0.601317 | 3.2:-62820753 | MS.gene62188:intron |
| ATGTGAGTTTCTGAGATGCT+TGG | 0.612261 | 3.2:+62821592 | None:intergenic |
| CTTTCTGGGAAAGATTTCAG+TGG | 0.615907 | 3.2:-62821152 | MS.gene62188:CDS |
| TTTGGAAGTTGAAGGCAAAG+AGG | 0.617513 | 3.2:+62821795 | None:intergenic |
| CATCAAGCAAGACTTCAAAA+CGG | 0.635311 | 3.2:-62821120 | MS.gene62188:intron |
| AAGGTGTTGACCTTAAGAGA+TGG | 0.643063 | 3.2:+62821764 | None:intergenic |
| GACCTTAAGAGATGGTGATG+AGG | 0.653487 | 3.2:+62821772 | None:intergenic |
| ATAGTGATACTACTACATAC+CGG | 0.658992 | 3.2:+62820076 | None:intergenic |
| TATGGTCAAGGAGTTACTAG+GGG | 0.721516 | 3.2:-62821182 | MS.gene62188:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAGAAATTAAATTAAAA+TGG | - | chr3.2:62821487-62821506 | MS.gene62188:intron | 10.0% |
| !! | GTTAATAAACTGAATTATAT+TGG | + | chr3.2:62821270-62821289 | None:intergenic | 15.0% |
| !! | TATAAGTATAACTGTTTATT+AGG | + | chr3.2:62821414-62821433 | None:intergenic | 15.0% |
| !! | TTCTTCAAATAATATAACAA+AGG | + | chr3.2:62821441-62821460 | None:intergenic | 15.0% |
| !!! | TTAATTTCTTAACATTCTTT+TGG | + | chr3.2:62821480-62821499 | None:intergenic | 15.0% |
| !!! | TTTTTTGGTTAACAAATAAT+GGG | - | chr3.2:62820663-62820682 | MS.gene62188:intron | 15.0% |
| !!! | CTTTTTTGGTTAACAAATAA+TGG | - | chr3.2:62820662-62820681 | MS.gene62188:intron | 20.0% |
| !!! | GTTAAAGTTTTGTTCTTTTT+TGG | - | chr3.2:62820648-62820667 | MS.gene62188:intron | 20.0% |
| !!! | TAATTTTGCACCTTTAAAAT+TGG | + | chr3.2:62820954-62820973 | None:intergenic | 20.0% |
| !!! | TTTAAAGGTGCAAAATTATT+AGG | - | chr3.2:62820956-62820975 | MS.gene62188:CDS | 20.0% |
| !!! | TTTATTAGGTTGTTGAATAA+TGG | + | chr3.2:62821400-62821419 | None:intergenic | 20.0% |
| ! | AAACATTCATATTGAAGTGT+TGG | + | chr3.2:62820450-62820469 | None:intergenic | 25.0% |
| ! | AAATTTGAGCAATGCTAATT+TGG | - | chr3.2:62821749-62821768 | MS.gene62188:CDS | 25.0% |
| ! | AACTGAATTATATTGGACTA+AGG | + | chr3.2:62821263-62821282 | None:intergenic | 25.0% |
| ! | ACTGAATTATATTGGACTAA+GGG | + | chr3.2:62821262-62821281 | None:intergenic | 25.0% |
| ! | ATAACAACAAAGCAAAGAAA+AGG | + | chr3.2:62821300-62821319 | None:intergenic | 25.0% |
| ! | CAACACAATAAATTGAGAAA+TGG | + | chr3.2:62821708-62821727 | None:intergenic | 25.0% |
| ! | CATTTCTCAATTTATTGTGT+TGG | - | chr3.2:62821706-62821725 | MS.gene62188:intron | 25.0% |
| ! | CTTCAATATGAATGTTTATC+TGG | - | chr3.2:62820453-62820472 | MS.gene62188:intron | 25.0% |
| ! | TCAGCTAAATTAATACTTGT+AGG | + | chr3.2:62821636-62821655 | None:intergenic | 25.0% |
| ! | TTGTTAATTACAGTGATTTG+AGG | + | chr3.2:62821672-62821691 | None:intergenic | 25.0% |
| !! | CATTCATTGTGATACATTTT+TGG | + | chr3.2:62821023-62821042 | None:intergenic | 25.0% |
| !! | TTTTTCATGCTCATTATGAT+AGG | - | chr3.2:62821179-62821198 | MS.gene62188:CDS | 25.0% |
| !!! | AGTTTAAGTTGATTTGATGA+CGG | - | chr3.2:62820840-62820859 | MS.gene62188:intron | 25.0% |
| !!! | ATTAAGCAAAGTTTTGAACA+AGG | + | chr3.2:62821326-62821345 | None:intergenic | 25.0% |
| AATAGCAGTGATTGAAAGTA+GGG | - | chr3.2:62821343-62821362 | MS.gene62188:intron | 30.0% | |
| ATGAATGTAGTATACACACA+TGG | - | chr3.2:62821036-62821055 | MS.gene62188:intron | 30.0% | |
| ATGGCAAATTAGAAGATTCA+AGG | - | chr3.2:62821506-62821525 | MS.gene62188:CDS | 30.0% | |
| CAGAAACTCACATTATCATT+CGG | - | chr3.2:62820320-62820339 | MS.gene62188:intron | 30.0% | |
| TAATAGCAGTGATTGAAAGT+AGG | - | chr3.2:62821342-62821361 | MS.gene62188:intron | 30.0% | |
| TCATTATGATAGGATCTGAT+GGG | - | chr3.2:62821189-62821208 | MS.gene62188:CDS | 30.0% | |
| TGGCAAATTAGAAGATTCAA+GGG | - | chr3.2:62821507-62821526 | MS.gene62188:CDS | 30.0% | |
| TTTAAGGGATCCAATATTAC+AGG | - | chr3.2:62821801-62821820 | MS.gene62188:CDS | 30.0% | |
| ! | AACGGGAAATACATCTTTTA+AGG | - | chr3.2:62821785-62821804 | MS.gene62188:CDS | 30.0% |
| ! | ACGGGAAATACATCTTTTAA+GGG | - | chr3.2:62821786-62821805 | MS.gene62188:CDS | 30.0% |
| !! | AACAAATAATGGGTATGGTT+TGG | - | chr3.2:62820673-62820692 | MS.gene62188:intron | 30.0% |
| !! | GTTTAAGTTGATTTGATGAC+GGG | - | chr3.2:62820841-62820860 | MS.gene62188:intron | 30.0% |
| !! | TGGTTAACAAATAATGGGTA+TGG | - | chr3.2:62820668-62820687 | MS.gene62188:intron | 30.0% |
| !! | TTCTTTGATGCTGATTTAAC+AGG | - | chr3.2:62820986-62821005 | MS.gene62188:intron | 30.0% |
| !! | TTTAAGTTGATTTGATGACG+GGG | - | chr3.2:62820842-62820861 | MS.gene62188:intron | 30.0% |
| !!! | CACTACAAGATTTTTTTGAC+AGG | + | chr3.2:62821574-62821593 | None:intergenic | 30.0% |
| !!! | TTGTGATACATTTTTGGTGT+TGG | + | chr3.2:62821017-62821036 | None:intergenic | 30.0% |
| ATATGGTCAAGGAGTTACTA+GGG | - | chr3.2:62820719-62820738 | MS.gene62188:intron | 35.0% | |
| CATCAAGCAAGACTTCAAAA+CGG | - | chr3.2:62820782-62820801 | MS.gene62188:CDS | 35.0% | |
| CTCATTATGATAGGATCTGA+TGG | - | chr3.2:62821188-62821207 | MS.gene62188:CDS | 35.0% | |
| GACAAAACATTGACACTTGT+CGG | + | chr3.2:62820482-62820501 | None:intergenic | 35.0% | |
| GGGGAGATATTGAATGTAAA+TGG | + | chr3.2:62821072-62821091 | None:intergenic | 35.0% | |
| TACGAACACTAACACAAACA+CGG | + | chr3.2:62820558-62820577 | None:intergenic | 35.0% | |
| TTGAGCAATGCTAATTTGGA+AGG | - | chr3.2:62821753-62821772 | MS.gene62188:CDS | 35.0% | |
| !! | TGATGCTGATTTAACAGGTT+TGG | - | chr3.2:62820991-62821010 | MS.gene62188:intron | 35.0% |
| AACCTCATCACCATCTCTTA+AGG | - | chr3.2:62820128-62820147 | MS.gene62188:CDS | 40.0% | |
| AACTCCTATCTCTCTGTTTC+TGG | - | chr3.2:62820180-62820199 | MS.gene62188:intron | 40.0% | |
| AGAAACAGAGAGATAGGAGT+TGG | + | chr3.2:62820181-62820200 | None:intergenic | 40.0% | |
| CACGGACACCAAACAAAATA+CGG | + | chr3.2:62820540-62820559 | None:intergenic | 40.0% | |
| CATATGGTCAAGGAGTTACT+AGG | - | chr3.2:62820718-62820737 | MS.gene62188:intron | 40.0% | |
| CTAGTAACTCCTTGACCATA+TGG | + | chr3.2:62820720-62820739 | None:intergenic | 40.0% | |
| TACCTTTGTCACATTTGCCA+GGG | + | chr3.2:62821154-62821173 | None:intergenic | 40.0% | |
| TATACCTTGAATGCAAGTGC+AGG | + | chr3.2:62820407-62820426 | None:intergenic | 40.0% | |
| TATGGTCAAGGAGTTACTAG+GGG | - | chr3.2:62820720-62820739 | MS.gene62188:intron | 40.0% | |
| TGATGAGGTTTGGAAGTTGA+AGG | + | chr3.2:62820118-62820137 | None:intergenic | 40.0% | |
| TTACCTTTGTCACATTTGCC+AGG | + | chr3.2:62821155-62821174 | None:intergenic | 40.0% | |
| TTTGGAAGTTGAAGGCAAAG+AGG | + | chr3.2:62820110-62820129 | None:intergenic | 40.0% | |
| ! | ATGACGGGGATAGTCAAATT+CGG | - | chr3.2:62820856-62820875 | MS.gene62188:intron | 40.0% |
| ! | CTGCGTCAAGCCAATTTTAA+AGG | - | chr3.2:62820941-62820960 | MS.gene62188:CDS | 40.0% |
| ! | CTTTCTGGGAAAGATTTCAG+TGG | - | chr3.2:62820750-62820769 | MS.gene62188:intron | 40.0% |
| ! | TAAGAGATGGTGATGAGGTT+TGG | + | chr3.2:62820128-62820147 | None:intergenic | 40.0% |
| ! | TGGTGTGTCCGTATTTTGTT+TGG | - | chr3.2:62820529-62820548 | MS.gene62188:intron | 40.0% |
| ! | TTTGGAAGGTGCACTTGTAA+CGG | - | chr3.2:62821767-62821786 | MS.gene62188:CDS | 40.0% |
| !! | AAAATTGGCTTGACGCAGTA+TGG | + | chr3.2:62820939-62820958 | None:intergenic | 40.0% |
| !! | AAGGTGTTGACCTTAAGAGA+TGG | + | chr3.2:62820141-62820160 | None:intergenic | 40.0% |
| !! | ATGGTTTGGTGATGAATGCA+GGG | - | chr3.2:62820687-62820706 | MS.gene62188:intron | 40.0% |
| !! | ATGTGAGTTTCTGAGATGCT+TGG | + | chr3.2:62820313-62820332 | None:intergenic | 40.0% |
| !! | TATGGTTTGGTGATGAATGC+AGG | - | chr3.2:62820686-62820705 | MS.gene62188:intron | 40.0% |
| ACTAGGGGACAAGATCTTTC+TGG | - | chr3.2:62820735-62820754 | MS.gene62188:intron | 45.0% | |
| ATCAGCACCTGACATGACAA+CGG | + | chr3.2:62821097-62821116 | None:intergenic | 45.0% | |
| CGAACCAGAAACAGAGAGAT+AGG | + | chr3.2:62820187-62820206 | None:intergenic | 45.0% | |
| CTAGGGGACAAGATCTTTCT+GGG | - | chr3.2:62820736-62820755 | MS.gene62188:intron | 45.0% | |
| GTATATGTGCTAGTGCTTCG+TGG | - | chr3.2:62820509-62820528 | MS.gene62188:intron | 45.0% | |
| TCACTCTACCACTCTTCACA+GGG | - | chr3.2:62820266-62820285 | MS.gene62188:intron | 45.0% | |
| TGATCCTGCACTTGCATTCA+AGG | - | chr3.2:62820400-62820419 | MS.gene62188:intron | 45.0% | |
| TTCCCTGGCAAATGTGACAA+AGG | - | chr3.2:62821149-62821168 | MS.gene62188:CDS | 45.0% | |
| TTGGCATTACTGCTTTCTGC+AGG | - | chr3.2:62821725-62821744 | MS.gene62188:CDS | 45.0% | |
| ! | GACCTTAAGAGATGGTGATG+AGG | + | chr3.2:62820133-62820152 | None:intergenic | 45.0% |
| ! | GATGCTTGGTGAGTTTGCTT+TGG | + | chr3.2:62820299-62820318 | None:intergenic | 45.0% |
| ! | TTGGAAGGTGCACTTGTAAC+GGG | - | chr3.2:62821768-62821787 | MS.gene62188:CDS | 45.0% |
| !! | CATGTCAGGTGCTGATCTTT+CGG | - | chr3.2:62821101-62821120 | MS.gene62188:intron | 45.0% |
| !! | TAGAAGTGCAGACTTTTCCC+TGG | - | chr3.2:62821134-62821153 | MS.gene62188:CDS | 45.0% |
| CATACCGGCGCCTGTAATAT+TGG | + | chr3.2:62821814-62821833 | None:intergenic | 50.0% | |
| CTCACTCTACCACTCTTCAC+AGG | - | chr3.2:62820265-62820284 | MS.gene62188:intron | 50.0% | |
| GATTGCTTCCCTGTGAAGAG+TGG | + | chr3.2:62820277-62820296 | None:intergenic | 50.0% | |
| GGATCCAATATTACAGGCGC+CGG | - | chr3.2:62821807-62821826 | MS.gene62188:CDS | 50.0% | |
| TCAGCACCTGACATGACAAC+GGG | + | chr3.2:62821096-62821115 | None:intergenic | 50.0% | |
| !! | AGAGATAGGAGTTGGTGAGC+AGG | + | chr3.2:62820173-62820192 | None:intergenic | 50.0% |
| !! | AGTTGGTGAGCAGGTTGAAG+AGG | + | chr3.2:62820164-62820183 | None:intergenic | 50.0% |
| !! | GTTTGGTGATGAATGCAGGG+TGG | - | chr3.2:62820690-62820709 | MS.gene62188:intron | 50.0% |
| ACCTGACATGACAACGGGTG+GGG | + | chr3.2:62821091-62821110 | None:intergenic | 55.0% | |
| CACCTGACATGACAACGGGT+GGG | + | chr3.2:62821092-62821111 | None:intergenic | 55.0% | |
| GGTGATGAATGCAGGGTGGA+GGG | - | chr3.2:62820694-62820713 | MS.gene62188:intron | 55.0% | |
| ! | GGTGAGCAGGTTGAAGAGGA+AGG | + | chr3.2:62820160-62820179 | None:intergenic | 55.0% |
| ! | TGGTGATGAATGCAGGGTGG+AGG | - | chr3.2:62820693-62820712 | MS.gene62188:intron | 55.0% |
| ATGCAGGGTGGAGGGCCATA+TGG | - | chr3.2:62820702-62820721 | MS.gene62188:intron | 60.0% | |
| GCACCTGACATGACAACGGG+TGG | + | chr3.2:62821093-62821112 | None:intergenic | 60.0% | |
| GGTGGAGGGCCATATGGTCA+AGG | - | chr3.2:62820708-62820727 | MS.gene62188:intron | 60.0% | |
| TCCCCACCCGTTGTCATGTC+AGG | - | chr3.2:62821087-62821106 | MS.gene62188:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 62820088 | 62821836 | 62820088 | ID=MS.gene62188 |
| chr3.2 | mRNA | 62820088 | 62821836 | 62820088 | ID=MS.gene62188.t1;Parent=MS.gene62188 |
| chr3.2 | exon | 62821723 | 62821836 | 62821723 | ID=MS.gene62188.t1.exon1;Parent=MS.gene62188.t1 |
| chr3.2 | CDS | 62821723 | 62821836 | 62821723 | ID=cds.MS.gene62188.t1;Parent=MS.gene62188.t1 |
| chr3.2 | exon | 62821503 | 62821637 | 62821503 | ID=MS.gene62188.t1.exon2;Parent=MS.gene62188.t1 |
| chr3.2 | CDS | 62821503 | 62821637 | 62821503 | ID=cds.MS.gene62188.t1;Parent=MS.gene62188.t1 |
| chr3.2 | exon | 62821121 | 62821216 | 62821121 | ID=MS.gene62188.t1.exon3;Parent=MS.gene62188.t1 |
| chr3.2 | CDS | 62821121 | 62821216 | 62821121 | ID=cds.MS.gene62188.t1;Parent=MS.gene62188.t1 |
| chr3.2 | exon | 62820917 | 62820989 | 62820917 | ID=MS.gene62188.t1.exon4;Parent=MS.gene62188.t1 |
| chr3.2 | CDS | 62820917 | 62820989 | 62820917 | ID=cds.MS.gene62188.t1;Parent=MS.gene62188.t1 |
| chr3.2 | exon | 62820754 | 62820815 | 62820754 | ID=MS.gene62188.t1.exon5;Parent=MS.gene62188.t1 |
| chr3.2 | CDS | 62820754 | 62820815 | 62820754 | ID=cds.MS.gene62188.t1;Parent=MS.gene62188.t1 |
| chr3.2 | exon | 62820088 | 62820177 | 62820088 | ID=MS.gene62188.t1.exon6;Parent=MS.gene62188.t1 |
| chr3.2 | CDS | 62820088 | 62820177 | 62820088 | ID=cds.MS.gene62188.t1;Parent=MS.gene62188.t1 |
| Gene Sequence |
| Protein sequence |
