AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0941410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941410 MtrunA17_Chr6g0457471 83.333 180 12 1 1 162 1 180 1.36e-108 306
Msa0941410 MtrunA17_Chr6g0457461 81.667 180 12 2 1 162 1 177 1.52e-104 296
Msa0941410 MtrunA17_Chr7g0215381 73.837 172 26 2 9 162 11 181 5.33e-91 262
Msa0941410 MtrunA17_Chr7g0215421 74.419 172 25 2 9 162 11 181 7.74e-91 262
Msa0941410 MtrunA17_Chr7g0215361 74.269 171 25 2 10 162 12 181 1.78e-90 261
Msa0941410 MtrunA17_Chr7g0215351 73.837 172 26 2 9 162 11 181 2.17e-90 261
Msa0941410 MtrunA17_Chr7g0215431 73.684 171 26 2 10 162 12 181 2.26e-89 258
Msa0941410 MtrunA17_Chr4g0072241 44.444 153 66 2 26 159 15 167 5.63e-46 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941410 AT5G38410.1 66.480 179 38 2 2 162 4 178 2.11e-84 246
Msa0941410 AT5G38430.1 66.480 179 38 2 2 162 4 178 3.46e-84 245
Msa0941410 AT5G38430.2 66.480 179 38 2 2 162 4 178 3.46e-84 245
Msa0941410 AT1G67090.1 65.922 179 39 2 2 162 4 178 3.95e-84 245
Msa0941410 AT5G38410.3 64.674 184 38 2 2 162 4 183 1.37e-83 244
Msa0941410 AT5G38420.1 65.363 179 40 2 2 162 4 178 1.18e-82 241
Msa0941410 AT5G38410.2 66.860 172 42 2 2 162 4 171 3.25e-82 240
Msa0941410 AT1G67090.2 68.132 91 25 1 2 92 4 90 1.25e-38 128

Find 67 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATTGATACAATCTATA+AGG 0.280103 6_3:-15227783 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.291082 6_3:-15228124 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_3:-15229259 None:intergenic
TATGAGGTATGATTAATTAT+AGG 0.307103 6_3:+15227757 None:intergenic
TTGTTGGTCTTCTTGGTGAC+TGG 0.326813 6_3:-15228117 None:intergenic
TCAAACATGTATTTCACCTT+TGG 0.342691 6_3:+15227916 Msa0941410:five_prime_UTR
GATACTATGACGGACGTTAC+TGG 0.345500 6_3:+15229047 Msa0941410:CDS
GATTCATTCATCAGAATCAT+TGG 0.353791 6_3:+15229154 Msa0941410:CDS
ATGATTCTGATGAATGAATC+TGG 0.373664 6_3:-15229151 None:intergenic
TGCCGAGGAGGCGCGGTTAA+CGG 0.377863 6_3:-15228043 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_3:-15228433 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_3:+15229102 Msa0941410:CDS
AGGATTTGAGACCGGTGAAC+GGG 0.405433 6_3:-15228083 None:intergenic
TTAAAGTGGACCCTTTAGAT+AGG 0.413191 6_3:+15227804 Msa0941410:five_prime_UTR
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_3:+15229073 Msa0941410:CDS
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_3:+15228474 Msa0941410:CDS
CACAAAAGTACCTATCTAAA+GGG 0.424073 6_3:-15227814 None:intergenic
CACCGTTAACCGCGCCTCCT+CGG 0.440131 6_3:+15228041 Msa0941410:CDS
AACTTAGTTGCCCCGTTCAC+CGG 0.452141 6_3:+15228072 Msa0941410:CDS
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_3:-15228476 None:intergenic
TGTTGGTCTTCTTGGTGACT+GGG 0.456367 6_3:-15228116 None:intergenic
TCACAAAAGTACCTATCTAA+AGG 0.465075 6_3:-15227815 None:intergenic
AACGGTGGTGACTGCGGCAG+AGG 0.471378 6_3:-15228025 None:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.471949 6_3:+15228090 Msa0941410:CDS
ACAAACAAAGTAGTAATAAA+GGG 0.474757 6_3:-15229258 None:intergenic
GATTGTATCAATATTTAAAG+TGG 0.475888 6_3:+15227790 Msa0941410:five_prime_UTR
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_3:+15229025 Msa0941410:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_3:-15228148 None:intergenic
TTGAGCACTCTTAGTACTTG+AGG 0.514644 6_3:+15227985 Msa0941410:five_prime_UTR
TTGTATAGTTTGAGTAGAGG+AGG 0.514696 6_3:-15227879 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_3:-15228151 None:intergenic
GGTGAACGGGGCAACTAAGT+TGG 0.527020 6_3:-15228070 None:intergenic
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_3:-15228430 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_3:-15228133 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_3:+15228480 Msa0941410:CDS
GACTGCGGCAGAGGAAATCA+AGG 0.539786 6_3:-15228016 None:intergenic
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_3:-15228477 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_3:-15229043 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_3:-15229024 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_3:+15228147 Msa0941410:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_3:-15228468 None:intergenic
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 6_3:-15228091 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_3:-15228475 None:intergenic
GAGGATTTGAGACCGGTGAA+CGG 0.588658 6_3:-15228084 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_3:-15229085 None:intergenic
GGGAAATATAGTTCTTACAA+TGG 0.592681 6_3:-15229287 None:intergenic
AACTAAGTTGGCTTGTGCCG+AGG 0.594759 6_3:-15228058 None:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_3:+15228418 Msa0941410:intron
ATGTTGTATAGTTTGAGTAG+AGG 0.605108 6_3:-15227882 None:intergenic
CAAACTTGCTATATATCCAA+AGG 0.613113 6_3:-15227932 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_3:+15228144 Msa0941410:CDS
CGAGGAGGCGCGGTTAACGG+TGG 0.616402 6_3:-15228040 None:intergenic
TGATTCTGATGAATGAATCT+GGG 0.619551 6_3:-15229150 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_3:+15228167 Msa0941410:CDS
TAAGTTGGCTTGTGCCGAGG+AGG 0.632964 6_3:-15228055 None:intergenic
GCGGTTAACGGTGGTGACTG+CGG 0.636988 6_3:-15228031 None:intergenic
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_3:-15229098 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_3:-15229036 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_3:-15228472 None:intergenic
GGATTTGAGACCGGTGAACG+GGG 0.645575 6_3:-15228082 None:intergenic
GGTGACTGGGAAACCAGCTG+AGG 0.655087 6_3:-15228103 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_3:-15229033 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_3:-15229255 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_3:+15229059 Msa0941410:CDS
CGTTCACCAGGATACTATGA+CGG 0.703631 6_3:+15229037 Msa0941410:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_3:+15229056 Msa0941410:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_3:+15228465 Msa0941410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_3:15228229-15228248 None:intergenic 10.0%
!! AATAAATATATACAATAAAG+TGG - chr6_3:15228677-15228696 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_3:15228748-15228767 None:intergenic 10.0%
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_3:15228229-15228248 None:intergenic 10.0%
!! AATAAATATATACAATAAAG+TGG - chr6_3:15228677-15228696 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_3:15228748-15228767 None:intergenic 10.0%
!! AAATATTGATACAATCTATA+AGG - chr6_3:15227786-15227805 None:intergenic 15.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_3:15228228-15228247 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_3:15228230-15228249 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_3:15228276-15228295 None:intergenic 15.0%
!! ATACATAAAATTGAGTATTA+GGG - chr6_3:15228393-15228412 None:intergenic 15.0%
!! TATACATAAAATTGAGTATT+AGG - chr6_3:15228394-15228413 None:intergenic 15.0%
!! TAAGTTAAAAAGGAAAAAAA+AGG - chr6_3:15228584-15228603 None:intergenic 15.0%
!! AATTAAACTGTAAGTTAAAA+AGG - chr6_3:15228594-15228613 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_3:15228786-15228805 None:intergenic 15.0%
!! AAATATTGATACAATCTATA+AGG - chr6_3:15227786-15227805 None:intergenic 15.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_3:15228228-15228247 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_3:15228230-15228249 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_3:15228276-15228295 None:intergenic 15.0%
!! ATACATAAAATTGAGTATTA+GGG - chr6_3:15228393-15228412 None:intergenic 15.0%
!! TATACATAAAATTGAGTATT+AGG - chr6_3:15228394-15228413 None:intergenic 15.0%
!! TAAGTTAAAAAGGAAAAAAA+AGG - chr6_3:15228584-15228603 None:intergenic 15.0%
!! AATTAAACTGTAAGTTAAAA+AGG - chr6_3:15228594-15228613 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_3:15228786-15228805 None:intergenic 15.0%
!! GATTGTATCAATATTTAAAG+TGG + chr6_3:15227790-15227809 Msa0941410:five_prime_UTR 20.0%
!! TTAATTAATCATGTCAACTT+AGG - chr6_3:15228351-15228370 None:intergenic 20.0%
!! ATGTATAATATTTATAGGTG+TGG + chr6_3:15228407-15228426 Msa0941410:intron 20.0%
!! AAAAATTCATTGTCAATGTA+TGG - chr6_3:15228618-15228637 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_3:15228788-15228807 Msa0941410:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_3:15228992-15229011 Msa0941410:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_3:15229229-15229248 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_3:15229261-15229280 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_3:15229262-15229281 None:intergenic 20.0%
!! TAAGGTTACCTATAATTAAT+TGG - chr6_3:15227768-15227787 None:intergenic 20.0%
!! GATTGTATCAATATTTAAAG+TGG + chr6_3:15227790-15227809 Msa0941410:five_prime_UTR 20.0%
!! TTAATTAATCATGTCAACTT+AGG - chr6_3:15228351-15228370 None:intergenic 20.0%
!! ATGTATAATATTTATAGGTG+TGG + chr6_3:15228407-15228426 Msa0941410:intron 20.0%
!! AAAAATTCATTGTCAATGTA+TGG - chr6_3:15228618-15228637 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_3:15228788-15228807 Msa0941410:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_3:15228992-15229011 Msa0941410:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_3:15229229-15229248 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_3:15229261-15229280 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_3:15229262-15229281 None:intergenic 20.0%
! TATGCAAAAATATGGAACAT+GGG - chr6_3:15228205-15228224 None:intergenic 25.0%
! TTACATATCTATGTACCTTA+AGG + chr6_3:15228258-15228277 Msa0941410:intron 25.0%
! CTTGTCATGAATATAATTCT+AGG + chr6_3:15228298-15228317 Msa0941410:intron 25.0%
! TATGCAAAAATATGGAACAT+GGG - chr6_3:15228205-15228224 None:intergenic 25.0%
! TTACATATCTATGTACCTTA+AGG + chr6_3:15228258-15228277 Msa0941410:intron 25.0%
! CTTGTCATGAATATAATTCT+AGG + chr6_3:15228298-15228317 Msa0941410:intron 25.0%
!! CACAAAAGTACCTATCTAAA+GGG - chr6_3:15227817-15227836 None:intergenic 30.0%
!! TCACAAAAGTACCTATCTAA+AGG - chr6_3:15227818-15227837 None:intergenic 30.0%
ATGTTGTATAGTTTGAGTAG+AGG - chr6_3:15227885-15227904 None:intergenic 30.0%
TCAAACATGTATTTCACCTT+TGG + chr6_3:15227916-15227935 Msa0941410:five_prime_UTR 30.0%
!! CAAACTTGCTATATATCCAA+AGG - chr6_3:15227935-15227954 None:intergenic 30.0%
TCTTAGTACTTGAGGAAAAA+TGG + chr6_3:15227993-15228012 Msa0941410:exon 30.0%
AAAAATATGGAACATGGGTT+AGG - chr6_3:15228200-15228219 None:intergenic 30.0%
GTATGCAAAAATATGGAACA+TGG - chr6_3:15228206-15228225 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_3:15228795-15228814 Msa0941410:intron 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_3:15229153-15229172 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_3:15229154-15229173 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_3:15229154-15229173 Msa0941410:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_3:15229258-15229277 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_3:15229290-15229309 None:intergenic 30.0%
!! CACAAAAGTACCTATCTAAA+GGG - chr6_3:15227817-15227836 None:intergenic 30.0%
!! TCACAAAAGTACCTATCTAA+AGG - chr6_3:15227818-15227837 None:intergenic 30.0%
ATGTTGTATAGTTTGAGTAG+AGG - chr6_3:15227885-15227904 None:intergenic 30.0%
TCAAACATGTATTTCACCTT+TGG + chr6_3:15227916-15227935 Msa0941410:five_prime_UTR 30.0%
!! CAAACTTGCTATATATCCAA+AGG - chr6_3:15227935-15227954 None:intergenic 30.0%
TCTTAGTACTTGAGGAAAAA+TGG + chr6_3:15227993-15228012 Msa0941410:exon 30.0%
AAAAATATGGAACATGGGTT+AGG - chr6_3:15228200-15228219 None:intergenic 30.0%
GTATGCAAAAATATGGAACA+TGG - chr6_3:15228206-15228225 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_3:15228795-15228814 Msa0941410:intron 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_3:15229153-15229172 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_3:15229154-15229173 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_3:15229154-15229173 Msa0941410:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_3:15229258-15229277 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_3:15229290-15229309 None:intergenic 30.0%
TTAAAGTGGACCCTTTAGAT+AGG + chr6_3:15227804-15227823 Msa0941410:five_prime_UTR 35.0%
! GATAGGTACTTTTGTGAACA+AGG + chr6_3:15227821-15227840 Msa0941410:five_prime_UTR 35.0%
TTGTATAGTTTGAGTAGAGG+AGG - chr6_3:15227882-15227901 None:intergenic 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_3:15228127-15228146 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_3:15228136-15228155 None:intergenic 35.0%
TGATGGGGTATGCAAAAATA+TGG - chr6_3:15228213-15228232 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_3:15228500-15228519 Msa0941410:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_3:15228504-15228523 Msa0941410:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_3:15228505-15228524 Msa0941410:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_3:15228538-15228557 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_3:15228537-15228556 Msa0941410:intron 35.0%
GCGTCATGATAAAATCTGTT+TGG - chr6_3:15228655-15228674 None:intergenic 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_3:15228861-15228880 Msa0941410:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_3:15229102-15229121 Msa0941410:CDS 35.0%
TTAAAGTGGACCCTTTAGAT+AGG + chr6_3:15227804-15227823 Msa0941410:five_prime_UTR 35.0%
! GATAGGTACTTTTGTGAACA+AGG + chr6_3:15227821-15227840 Msa0941410:five_prime_UTR 35.0%
TTGTATAGTTTGAGTAGAGG+AGG - chr6_3:15227882-15227901 None:intergenic 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_3:15228127-15228146 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_3:15228136-15228155 None:intergenic 35.0%
TGATGGGGTATGCAAAAATA+TGG - chr6_3:15228213-15228232 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_3:15228500-15228519 Msa0941410:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_3:15228504-15228523 Msa0941410:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_3:15228505-15228524 Msa0941410:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_3:15228538-15228557 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_3:15228537-15228556 Msa0941410:intron 35.0%
GCGTCATGATAAAATCTGTT+TGG - chr6_3:15228655-15228674 None:intergenic 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_3:15228861-15228880 Msa0941410:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_3:15229102-15229121 Msa0941410:CDS 35.0%
TTGAGCACTCTTAGTACTTG+AGG + chr6_3:15227985-15228004 Msa0941410:five_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_3:15228144-15228163 Msa0941410:CDS 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_3:15228436-15228455 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_3:15228509-15228528 Msa0941410:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_3:15228834-15228853 Msa0941410:intron 40.0%
ATTCTCCACATTCACAGAGT+CGG - chr6_3:15228908-15228927 None:intergenic 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_3:15228932-15228951 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_3:15228957-15228976 Msa0941410:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_3:15228958-15228977 Msa0941410:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_3:15228962-15228981 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_3:15229101-15229120 None:intergenic 40.0%
TTGAGCACTCTTAGTACTTG+AGG + chr6_3:15227985-15228004 Msa0941410:five_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_3:15228144-15228163 Msa0941410:CDS 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_3:15228436-15228455 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_3:15228509-15228528 Msa0941410:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_3:15228834-15228853 Msa0941410:intron 40.0%
ATTCTCCACATTCACAGAGT+CGG - chr6_3:15228908-15228927 None:intergenic 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_3:15228932-15228951 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_3:15228957-15228976 Msa0941410:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_3:15228958-15228977 Msa0941410:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_3:15228962-15228981 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_3:15229101-15229120 None:intergenic 40.0%
!! TGTTGGTCTTCTTGGTGACT+GGG - chr6_3:15228119-15228138 None:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG - chr6_3:15228120-15228139 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_3:15228154-15228173 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_3:15228167-15228186 Msa0941410:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_3:15228433-15228452 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_3:15228479-15228498 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_3:15228480-15228499 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_3:15228480-15228499 Msa0941410:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_3:15228516-15228535 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_3:15228522-15228541 Msa0941410:intron 45.0%
AGCGGAATTTGGATTACCTG+CGG + chr6_3:15228806-15228825 Msa0941410:intron 45.0%
GAATTTGGATTACCTGCGGT+CGG + chr6_3:15228810-15228829 Msa0941410:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_3:15228889-15228908 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_3:15228949-15228968 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_3:15229039-15229058 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_3:15229037-15229056 Msa0941410:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_3:15229046-15229065 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_3:15229047-15229066 Msa0941410:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_3:15229073-15229092 Msa0941410:CDS 45.0%
!! TGTTGGTCTTCTTGGTGACT+GGG - chr6_3:15228119-15228138 None:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG - chr6_3:15228120-15228139 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_3:15228154-15228173 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_3:15228167-15228186 Msa0941410:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_3:15228433-15228452 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_3:15228479-15228498 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_3:15228480-15228499 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_3:15228480-15228499 Msa0941410:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_3:15228516-15228535 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_3:15228522-15228541 Msa0941410:intron 45.0%
AGCGGAATTTGGATTACCTG+CGG + chr6_3:15228806-15228825 Msa0941410:intron 45.0%
GAATTTGGATTACCTGCGGT+CGG + chr6_3:15228810-15228829 Msa0941410:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_3:15228889-15228908 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_3:15228949-15228968 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_3:15229039-15229058 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_3:15229037-15229056 Msa0941410:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_3:15229046-15229065 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_3:15229047-15229066 Msa0941410:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_3:15229073-15229092 Msa0941410:CDS 45.0%
!!! ATTTTATGTATAATATTTAT+AGG + chr6_3:15228402-15228421 Msa0941410:intron 5.0%
!!! ATTTTATGTATAATATTTAT+AGG + chr6_3:15228402-15228421 Msa0941410:intron 5.0%
!! AACTAAGTTGGCTTGTGCCG+AGG - chr6_3:15228061-15228080 None:intergenic 50.0%
AACTTAGTTGCCCCGTTCAC+CGG + chr6_3:15228072-15228091 Msa0941410:CDS 50.0%
! AGGATTTGAGACCGGTGAAC+GGG - chr6_3:15228086-15228105 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_3:15228087-15228106 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_3:15228094-15228113 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_3:15228147-15228166 Msa0941410:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_3:15228151-15228170 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_3:15228418-15228437 Msa0941410:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_3:15228475-15228494 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_3:15228474-15228493 Msa0941410:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_3:15228478-15228497 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_3:15228840-15228859 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_3:15228842-15228861 Msa0941410:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_3:15228849-15228868 Msa0941410:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+TGG + chr6_3:15228900-15228919 Msa0941410:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_3:15229036-15229055 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_3:15229056-15229075 Msa0941410:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_3:15229059-15229078 Msa0941410:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_3:15229088-15229107 None:intergenic 50.0%
!! AACTAAGTTGGCTTGTGCCG+AGG - chr6_3:15228061-15228080 None:intergenic 50.0%
AACTTAGTTGCCCCGTTCAC+CGG + chr6_3:15228072-15228091 Msa0941410:CDS 50.0%
! AGGATTTGAGACCGGTGAAC+GGG - chr6_3:15228086-15228105 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_3:15228087-15228106 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_3:15228094-15228113 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_3:15228147-15228166 Msa0941410:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_3:15228151-15228170 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_3:15228418-15228437 Msa0941410:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_3:15228475-15228494 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_3:15228474-15228493 Msa0941410:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_3:15228478-15228497 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_3:15228840-15228859 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_3:15228842-15228861 Msa0941410:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_3:15228849-15228868 Msa0941410:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+TGG + chr6_3:15228900-15228919 Msa0941410:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_3:15229036-15229055 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_3:15229056-15229075 Msa0941410:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_3:15229059-15229078 Msa0941410:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_3:15229088-15229107 None:intergenic 50.0%
GACTGCGGCAGAGGAAATCA+AGG - chr6_3:15228019-15228038 None:intergenic 55.0%
!! TAAGTTGGCTTGTGCCGAGG+AGG - chr6_3:15228058-15228077 None:intergenic 55.0%
GGTGAACGGGGCAACTAAGT+TGG - chr6_3:15228073-15228092 None:intergenic 55.0%
! GGATTTGAGACCGGTGAACG+GGG - chr6_3:15228085-15228104 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_3:15228090-15228109 Msa0941410:CDS 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_3:15228465-15228484 Msa0941410:CDS 55.0%
ATGAGAGGATTACCGACCGC+AGG - chr6_3:15228825-15228844 None:intergenic 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_3:15229027-15229046 None:intergenic 55.0%
GACTGCGGCAGAGGAAATCA+AGG - chr6_3:15228019-15228038 None:intergenic 55.0%
!! TAAGTTGGCTTGTGCCGAGG+AGG - chr6_3:15228058-15228077 None:intergenic 55.0%
GGTGAACGGGGCAACTAAGT+TGG - chr6_3:15228073-15228092 None:intergenic 55.0%
! GGATTTGAGACCGGTGAACG+GGG - chr6_3:15228085-15228104 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_3:15228090-15228109 Msa0941410:CDS 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_3:15228465-15228484 Msa0941410:CDS 55.0%
ATGAGAGGATTACCGACCGC+AGG - chr6_3:15228825-15228844 None:intergenic 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_3:15229027-15229046 None:intergenic 55.0%
GCGGTTAACGGTGGTGACTG+CGG - chr6_3:15228034-15228053 None:intergenic 60.0%
GGTGACTGGGAAACCAGCTG+AGG - chr6_3:15228106-15228125 None:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_3:15228471-15228490 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_3:15229025-15229044 Msa0941410:CDS 60.0%
GCGGTTAACGGTGGTGACTG+CGG - chr6_3:15228034-15228053 None:intergenic 60.0%
GGTGACTGGGAAACCAGCTG+AGG - chr6_3:15228106-15228125 None:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_3:15228471-15228490 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_3:15229025-15229044 Msa0941410:CDS 60.0%
AACGGTGGTGACTGCGGCAG+AGG - chr6_3:15228028-15228047 None:intergenic 65.0%
CACCGTTAACCGCGCCTCCT+CGG + chr6_3:15228041-15228060 Msa0941410:CDS 65.0%
! TGCCGAGGAGGCGCGGTTAA+CGG - chr6_3:15228046-15228065 None:intergenic 65.0%
AACGGTGGTGACTGCGGCAG+AGG - chr6_3:15228028-15228047 None:intergenic 65.0%
CACCGTTAACCGCGCCTCCT+CGG + chr6_3:15228041-15228060 Msa0941410:CDS 65.0%
! TGCCGAGGAGGCGCGGTTAA+CGG - chr6_3:15228046-15228065 None:intergenic 65.0%
! CGAGGAGGCGCGGTTAACGG+TGG - chr6_3:15228043-15228062 None:intergenic 70.0%
! TGGCTTGTGCCGAGGAGGCG+CGG - chr6_3:15228053-15228072 None:intergenic 70.0%
! CGAGGAGGCGCGGTTAACGG+TGG - chr6_3:15228043-15228062 None:intergenic 70.0%
! TGGCTTGTGCCGAGGAGGCG+CGG - chr6_3:15228053-15228072 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 15227768 15229310 15227768 ID=Msa0941410;Name=Msa0941410
chr6_3 mRNA 15227768 15229310 15227768 ID=Msa0941410-mRNA-1;Parent=Msa0941410;Name=Msa0941410-mRNA-1;_AED=0.31;_eAED=0.31;_QI=244|0.5|0.66|1|1|1|3|70|162
chr6_3 exon 15227768 15228188 15227768 ID=Msa0941410-mRNA-1:exon:4640;Parent=Msa0941410-mRNA-1
chr6_3 exon 15228424 15228504 15228424 ID=Msa0941410-mRNA-1:exon:4641;Parent=Msa0941410-mRNA-1
chr6_3 exon 15229010 15229310 15229010 ID=Msa0941410-mRNA-1:exon:4642;Parent=Msa0941410-mRNA-1
chr6_3 five_prime_UTR 15227768 15228011 15227768 ID=Msa0941410-mRNA-1:five_prime_utr;Parent=Msa0941410-mRNA-1
chr6_3 CDS 15228012 15228188 15228012 ID=Msa0941410-mRNA-1:cds;Parent=Msa0941410-mRNA-1
chr6_3 CDS 15228424 15228504 15228424 ID=Msa0941410-mRNA-1:cds;Parent=Msa0941410-mRNA-1
chr6_3 CDS 15229010 15229240 15229010 ID=Msa0941410-mRNA-1:cds;Parent=Msa0941410-mRNA-1
chr6_3 three_prime_UTR 15229241 15229310 15229241 ID=Msa0941410-mRNA-1:three_prime_utr;Parent=Msa0941410-mRNA-1
Gene Sequence

>Msa0941410

ATGGCCTTGATTTCCTCTGCCGCAGTCACCACCGTTAACCGCGCCTCCTCGGCACAAGCCAACTTAGTTGCCCCGTTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTCACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAGATTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAAAAAACTACTAA

Protein sequence

>Msa0941410

MALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY*