Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628840 | XP_013454779.1 | 96.094 | 512 | 11 | 1 | 1 | 512 | 1 | 503 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628840 | sp|F4KGN5|S40A2_ARATH | 60.246 | 488 | 182 | 4 | 24 | 510 | 32 | 508 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008700 | Msa0628840 | 0.826229 | 3.041485e-54 | -8.615850e-47 |
| Msa0018610 | Msa0628840 | 0.825192 | 5.360681e-54 | -8.615850e-47 |
| Msa0024490 | Msa0628840 | 0.810963 | 8.876828e-51 | -8.615850e-47 |
| Msa0034590 | Msa0628840 | 0.806945 | 6.428226e-50 | -8.615850e-47 |
| Msa0042130 | Msa0628840 | 0.812907 | 3.347132e-51 | -8.615850e-47 |
| Msa0063850 | Msa0628840 | 0.803148 | 4.002741e-49 | -8.615850e-47 |
| Msa0078170 | Msa0628840 | 0.807482 | 4.947084e-50 | -8.615850e-47 |
| Msa0087370 | Msa0628840 | 0.804451 | 2.146321e-49 | -8.615850e-47 |
| Msa0108500 | Msa0628840 | 0.806554 | 7.774377e-50 | -8.615850e-47 |
| Msa0111000 | Msa0628840 | 0.829830 | 4.133055e-55 | -8.615850e-47 |
| Msa0606340 | Msa0628840 | 0.801441 | 8.991620e-49 | -8.615850e-47 |
| Msa0606380 | Msa0628840 | 0.852761 | 3.733648e-61 | -8.615850e-47 |
| Msa0619450 | Msa0628840 | 0.806196 | 9.249661e-50 | -8.615850e-47 |
| Msa0625900 | Msa0628840 | 0.807503 | 4.896693e-50 | -8.615850e-47 |
| Msa0628840 | Msa0630910 | 0.812150 | 4.899408e-51 | -8.615850e-47 |
| Msa0628840 | Msa0659580 | 0.805438 | 1.334724e-49 | -8.615850e-47 |
| Msa0628840 | Msa0663580 | 0.807178 | 5.738368e-50 | -8.615850e-47 |
| Msa0628840 | Msa0663690 | 0.811919 | 5.502708e-51 | -8.615850e-47 |
| Msa0628840 | Msa0666380 | 0.800921 | 1.148545e-48 | -8.615850e-47 |
| Msa0628840 | Msa0714230 | 0.807009 | 6.232579e-50 | -8.615850e-47 |
| Msa0628840 | Msa0719160 | 0.825096 | 5.647627e-54 | -8.615850e-47 |
| Msa0628840 | Msa0729740 | 0.802796 | 4.732181e-49 | -8.615850e-47 |
| Msa0628840 | Msa0730250 | 0.807165 | 5.775519e-50 | -8.615850e-47 |
| Msa0628840 | Msa0760160 | 0.815811 | 7.633134e-52 | -8.615850e-47 |
| Msa0628840 | Msa0760230 | 0.812465 | 4.181366e-51 | -8.615850e-47 |
| Msa0628840 | Msa0770050 | 0.804199 | 2.422429e-49 | -8.615850e-47 |
| Msa0628840 | Msa0808500 | 0.843282 | 1.542209e-58 | -8.615850e-47 |
| Msa0628840 | Msa0829250 | 0.806299 | 8.801427e-50 | -8.615850e-47 |
| Msa0628840 | Msa0873070 | 0.830567 | 2.730877e-55 | -8.615850e-47 |
| Msa0628840 | Msa0873950 | 0.801108 | 1.052107e-48 | -8.615850e-47 |
| Msa0628840 | Msa0906180 | 0.802722 | 4.902989e-49 | -8.615850e-47 |
| Msa0628840 | Msa0911440 | 0.817900 | 2.593549e-52 | -8.615850e-47 |
| Msa0628840 | Msa0911490 | 0.803883 | 2.818514e-49 | -8.615850e-47 |
| Msa0628840 | Msa0927830 | 0.817361 | 3.431576e-52 | -8.615850e-47 |
| Msa0628840 | Msa0938150 | 0.808886 | 2.484848e-50 | -8.615850e-47 |
| Msa0628840 | Msa0948820 | 0.810905 | 9.136304e-51 | -8.615850e-47 |
| Msa0628840 | Msa0967250 | 0.811714 | 6.097628e-51 | -8.615850e-47 |
| Msa0628840 | Msa0975460 | 0.821873 | 3.202747e-53 | -8.615850e-47 |
| Msa0628840 | Msa0985980 | 0.815212 | 1.038043e-51 | -8.615850e-47 |
| Msa0628840 | Msa1017590 | 0.820003 | 8.629574e-53 | -8.615850e-47 |
| Msa0628840 | Msa1017610 | 0.801441 | 8.993143e-49 | -8.615850e-47 |
| Msa0628840 | Msa1029010 | 0.815712 | 8.031287e-52 | -8.615850e-47 |
| Msa0628840 | Msa1039150 | 0.807499 | 4.907292e-50 | -8.615850e-47 |
| Msa0628840 | Msa1068110 | 0.822396 | 2.422417e-53 | -8.615850e-47 |
| Msa0628840 | Msa1083660 | 0.819484 | 1.133918e-52 | -8.615850e-47 |
| Msa0628840 | Msa1093250 | 0.837310 | 5.605341e-57 | -8.615850e-47 |
| Msa0628840 | Msa1174450 | -0.802166 | 6.382050e-49 | -8.615850e-47 |
| Msa0628840 | Msa1197740 | 0.800656 | 1.300818e-48 | -8.615850e-47 |
| Msa0628840 | Msa1220390 | 0.801354 | 9.366432e-49 | -8.615850e-47 |
| Msa0628840 | Msa1223710 | -0.801287 | 9.666425e-49 | -8.615850e-47 |
| Msa0628840 | Msa1228600 | 0.808235 | 3.421585e-50 | -8.615850e-47 |
| Msa0628840 | Msa1240240 | 0.833577 | 4.923602e-56 | -8.615850e-47 |
| Msa0628840 | Msa1265900 | 0.801453 | 8.938453e-49 | -8.615850e-47 |
| Msa0628840 | Msa1270860 | 0.800608 | 1.330539e-48 | -8.615850e-47 |
| Msa0628840 | Msa1297550 | 0.805511 | 1.288684e-49 | -8.615850e-47 |
| Msa0628840 | Msa1310620 | 0.808305 | 3.305484e-50 | -8.615850e-47 |
| Msa0628840 | Msa1346220 | 0.814073 | 1.854603e-51 | -8.615850e-47 |
| Msa0628840 | Msa1376520 | -0.811060 | 8.457283e-51 | -8.615850e-47 |
| Msa0628840 | Msa1381300 | 0.820906 | 5.354596e-53 | -8.615850e-47 |
| Msa0628840 | Msa1393350 | 0.801717 | 7.894446e-49 | -8.615850e-47 |
| Msa0628840 | Msa1398150 | 0.823009 | 1.743947e-53 | -8.615850e-47 |
| Msa0628840 | Msa1414790 | 0.809419 | 1.910300e-50 | -8.615850e-47 |
| Msa0628840 | Msa1429190 | -0.817483 | 3.221980e-52 | -8.615850e-47 |
| Msa0628840 | Msa1439000 | 0.808928 | 2.434090e-50 | -8.615850e-47 |
| Msa0628840 | Msa1457270 | 0.807107 | 5.940687e-50 | -8.615850e-47 |
| Msa0134120 | Msa0628840 | 0.801433 | 9.023856e-49 | -8.615850e-47 |
| Msa0170730 | Msa0628840 | 0.800864 | 1.179971e-48 | -8.615850e-47 |
| Msa0175240 | Msa0628840 | 0.803561 | 3.286772e-49 | -8.615850e-47 |
| Msa0207150 | Msa0628840 | 0.803697 | 3.079735e-49 | -8.615850e-47 |
| Msa0232170 | Msa0628840 | 0.814099 | 1.830338e-51 | -8.615850e-47 |
| Msa0385870 | Msa0628840 | 0.813336 | 2.694881e-51 | -8.615850e-47 |
| Msa0420280 | Msa0628840 | 0.822393 | 2.426226e-53 | -8.615850e-47 |
| Msa0433890 | Msa0628840 | 0.806638 | 7.463647e-50 | -8.615850e-47 |
| Msa0458690 | Msa0628840 | 0.808437 | 3.099023e-50 | -8.615850e-47 |
| Msa0249670 | Msa0628840 | 0.819527 | 1.108307e-52 | -8.615850e-47 |
| Msa0260930 | Msa0628840 | 0.803921 | 2.767072e-49 | -8.615850e-47 |
| Msa0532750 | Msa0628840 | 0.869503 | 2.949691e-66 | -8.615850e-47 |
| Msa0550760 | Msa0628840 | 0.813660 | 2.287230e-51 | -8.615850e-47 |
| Msa0550980 | Msa0628840 | 0.803614 | 3.204460e-49 | -8.615850e-47 |
| Msa0558220 | Msa0628840 | 0.802594 | 5.209514e-49 | -8.615850e-47 |
| Msa0559640 | Msa0628840 | 0.809792 | 1.588087e-50 | -8.615850e-47 |
| Msa0565370 | Msa0628840 | 0.801980 | 6.970478e-49 | -8.615850e-47 |
| Msa0565430 | Msa0628840 | 0.804027 | 2.630347e-49 | -8.615850e-47 |
| Msa0565930 | Msa0628840 | 0.818293 | 2.113947e-52 | -8.615850e-47 |
| Msa0585720 | Msa0628840 | 0.813019 | 3.163650e-51 | -8.615850e-47 |
| Msa0598610 | Msa0628840 | 0.802097 | 6.595615e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628840 | MtrunA17_Chr4g0004871 | 96.094 | 512 | 11 | 1 | 1 | 512 | 1 | 503 | 0.0 | 979 |
| Msa0628840 | MtrunA17_Chr4g0004881 | 87.476 | 511 | 51 | 3 | 1 | 511 | 1 | 498 | 0.0 | 883 |
| Msa0628840 | MtrunA17_Chr1g0192831 | 24.138 | 493 | 312 | 13 | 8 | 489 | 126 | 567 | 1.32e-20 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628840 | AT5G03570.2 | 60.246 | 488 | 182 | 4 | 24 | 510 | 32 | 508 | 0.0 | 593 |
| Msa0628840 | AT5G03570.1 | 60.246 | 488 | 182 | 4 | 24 | 510 | 32 | 508 | 0.0 | 593 |
| Msa0628840 | AT2G38460.3 | 58.607 | 488 | 186 | 4 | 26 | 510 | 38 | 512 | 0.0 | 581 |
| Msa0628840 | AT2G38460.8 | 58.607 | 488 | 186 | 4 | 26 | 510 | 38 | 512 | 0.0 | 581 |
| Msa0628840 | AT2G38460.7 | 58.607 | 488 | 186 | 4 | 26 | 510 | 38 | 512 | 0.0 | 581 |
| Msa0628840 | AT2G38460.4 | 58.607 | 488 | 186 | 4 | 26 | 510 | 38 | 512 | 0.0 | 581 |
| Msa0628840 | AT2G38460.1 | 58.607 | 488 | 186 | 4 | 26 | 510 | 38 | 512 | 0.0 | 581 |
| Msa0628840 | AT2G38460.6 | 58.607 | 488 | 186 | 4 | 26 | 510 | 38 | 512 | 0.0 | 581 |
| Msa0628840 | AT5G03570.3 | 57.198 | 514 | 182 | 5 | 24 | 510 | 32 | 534 | 0.0 | 579 |
| Msa0628840 | AT5G03570.4 | 60.510 | 471 | 174 | 4 | 41 | 510 | 4 | 463 | 0.0 | 570 |
| Msa0628840 | AT2G38460.2 | 57.627 | 354 | 134 | 4 | 159 | 509 | 26 | 366 | 8.94e-141 | 410 |
| Msa0628840 | AT2G38460.5 | 57.627 | 354 | 134 | 4 | 159 | 509 | 26 | 366 | 8.94e-141 | 410 |
| Msa0628840 | AT5G26820.1 | 25.911 | 494 | 300 | 16 | 29 | 505 | 152 | 596 | 1.76e-23 | 104 |
Find 128 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCACTTCAGTCCTTTA+TGG | 0.125940 | 4_3:-9550714 | Msa0628840:CDS |
| GTTGAGTTTATTATCCTTTC+TGG | 0.154638 | 4_3:-9550054 | Msa0628840:CDS |
| GAAGATGAAGAATGAAATTT+TGG | 0.167275 | 4_3:+9554473 | None:intergenic |
| GCATTGTTTGGCCCTTTAAT+TGG | 0.190357 | 4_3:-9553592 | Msa0628840:CDS |
| TCAACCCAAGTTCCAATTAA+AGG | 0.213970 | 4_3:+9553580 | None:intergenic |
| TCCCTTGTTTAGCTGCATTA+TGG | 0.217736 | 4_3:-9551019 | Msa0628840:CDS |
| ATGATGTTAAAATGCCATTT+TGG | 0.223694 | 4_3:+9550994 | None:intergenic |
| AAGGAATACTTCAACTTCTA+AGG | 0.236533 | 4_3:-9551961 | Msa0628840:CDS |
| GTTTCTCAAGCCCTTGCTTT+AGG | 0.240081 | 4_3:+9549768 | None:intergenic |
| ACTATAAACTCAAACTAAAA+TGG | 0.244922 | 4_3:+9549029 | None:intergenic |
| TTTACTTCTAGAACTTTCTT+TGG | 0.248474 | 4_3:+9549006 | None:intergenic |
| GTTTATATATGATCAGTATT+TGG | 0.251156 | 4_3:-9553669 | Msa0628840:CDS |
| CTCTTGTTCATGTGATAAAA+TGG | 0.253068 | 4_3:-9554537 | Msa0628840:exon |
| ACAAGATCTCACCTATTTAT+AGG | 0.265206 | 4_3:+9548884 | None:intergenic |
| GAACTGGACTCTGGTCTATT+TGG | 0.272120 | 4_3:-9551235 | Msa0628840:CDS |
| TCAGTCCTTTATGGATCTAT+TGG | 0.276334 | 4_3:-9550705 | Msa0628840:CDS |
| CTATATCTGTTCAGGAGTTC+TGG | 0.287618 | 4_3:-9550079 | Msa0628840:intron |
| TTCATCTTTGTCAGCAGTTC+CGG | 0.289433 | 4_3:+9552215 | None:intergenic |
| GGATCTATTGGCCTATGTTA+TGG | 0.293731 | 4_3:-9550693 | Msa0628840:CDS |
| CAGCAAGAAGTTGTTCTTCC+TGG | 0.293929 | 4_3:-9551816 | Msa0628840:CDS |
| GGTATACCTGCATATGTTAT+TGG | 0.306448 | 4_3:-9551341 | Msa0628840:CDS |
| TATTTCACTTTGATAAAGTA+TGG | 0.308540 | 4_3:-9549974 | Msa0628840:CDS |
| ATCAATATCTGTGGTGGAAT+TGG | 0.310884 | 4_3:-9552793 | Msa0628840:CDS |
| CTGCTCTATGCAGCAATATA+TGG | 0.313046 | 4_3:-9553637 | Msa0628840:CDS |
| CTGAGACTTCGCCTAGCTTT+AGG | 0.318390 | 4_3:+9549897 | None:intergenic |
| GCTGCATTATGGATCCAAAA+TGG | 0.333988 | 4_3:-9551008 | Msa0628840:CDS |
| TTGGAATAGTGCTTCTGTTT+GGG | 0.334106 | 4_3:-9552084 | Msa0628840:CDS |
| TCTGCTTCCATTGCATTGTT+TGG | 0.337950 | 4_3:-9553604 | Msa0628840:CDS |
| GGAGTGCTTTCAACTCTTGC+TGG | 0.344551 | 4_3:-9552772 | Msa0628840:CDS |
| CTACTTGCACCTGTTATAAC+TGG | 0.346354 | 4_3:-9552158 | Msa0628840:CDS |
| CTTCTGTTTGGGTGGAGTAT+TGG | 0.348225 | 4_3:-9552073 | Msa0628840:CDS |
| CGAGGAATAAGTGCTGTAAT+TGG | 0.353423 | 4_3:-9551311 | Msa0628840:CDS |
| CAAATGCAGGCAAGAAATAA+TGG | 0.357816 | 4_3:-9550903 | Msa0628840:CDS |
| CTATCTTGGAGCCTATAAAT+AGG | 0.361600 | 4_3:-9548895 | Msa0628840:three_prime_UTR |
| TTTGGAATAGTGCTTCTGTT+TGG | 0.364582 | 4_3:-9552085 | Msa0628840:CDS |
| AACAGGTGCAAGTAGCTTGC+AGG | 0.369428 | 4_3:+9552166 | None:intergenic |
| ATTATGAAGCCAGTTATAAC+AGG | 0.369589 | 4_3:+9552149 | None:intergenic |
| CAACCCAAGTTCCAATTAAA+GGG | 0.374511 | 4_3:+9553581 | None:intergenic |
| GATATTTGATATTGTAGAAC+AGG | 0.378977 | 4_3:+9551266 | None:intergenic |
| TTTAACATCATATATATTGA+TGG | 0.383319 | 4_3:-9550982 | Msa0628840:CDS |
| GATCTATTGGCCTATGTTAT+GGG | 0.383403 | 4_3:-9550692 | Msa0628840:CDS |
| CTGCTATAACTTTAGCACTT+TGG | 0.399038 | 4_3:-9552103 | Msa0628840:CDS |
| GATAGAGTTCTACATACATT+AGG | 0.417090 | 4_3:+9548913 | None:intergenic |
| TGTTCTTCCTGGACTAGCTC+TGG | 0.417677 | 4_3:-9551805 | Msa0628840:CDS |
| TTGGCCCTTTAATTGGAACT+TGG | 0.418154 | 4_3:-9553585 | Msa0628840:CDS |
| CAGTTCCGGTGGTTGGCCTT+CGG | 0.428049 | 4_3:+9552229 | None:intergenic |
| CAAATATCAGCTATTAGAAC+TGG | 0.431609 | 4_3:-9551251 | Msa0628840:CDS |
| TGATGACAGCAACTTTAGAA+TGG | 0.445718 | 4_3:-9551367 | Msa0628840:CDS |
| GCTGCATAGAGCAGTGAGTC+TGG | 0.452514 | 4_3:+9553646 | None:intergenic |
| GGTGAAACCATAAAATTAGT+AGG | 0.455425 | 4_3:-9549824 | Msa0628840:three_prime_UTR |
| AAAGAAAGTTCTAGAAGTAA+AGG | 0.458112 | 4_3:-9549004 | Msa0628840:three_prime_UTR |
| CTCATCACTTATTTATACAT+TGG | 0.467409 | 4_3:-9554446 | Msa0628840:CDS |
| CAATATCTCGGCTTGGACTG+TGG | 0.477996 | 4_3:-9550950 | Msa0628840:CDS |
| AAAGCCTTTCCATTCTCCTC+TGG | 0.480777 | 4_3:+9552003 | None:intergenic |
| CATCACAAAGTGATCTAGAA+AGG | 0.482356 | 4_3:-9551980 | Msa0628840:CDS |
| GATGACAGCAACTTTAGAAT+GGG | 0.482523 | 4_3:-9551366 | Msa0628840:CDS |
| ATGTATGTAGAACTCTATCT+TGG | 0.484029 | 4_3:-9548909 | Msa0628840:three_prime_UTR |
| ATCCTTTCTGGCAGTCACAT+TGG | 0.484150 | 4_3:-9550042 | Msa0628840:CDS |
| ATAGGCCAATAGATCCATAA+AGG | 0.488945 | 4_3:+9550700 | None:intergenic |
| ACTCTGGTCTATTTGGTCTC+AGG | 0.489072 | 4_3:-9551228 | Msa0628840:intron |
| AAATCTCTTATGTGGATGCT+TGG | 0.489879 | 4_3:-9551851 | Msa0628840:CDS |
| GCATGAGCATCATAAGTTGT+AGG | 0.492619 | 4_3:-9549936 | Msa0628840:exon |
| TCAAAGTAGCCAGAGGAGAA+TGG | 0.495455 | 4_3:-9552012 | Msa0628840:CDS |
| CAAAGATGAGTAGACAAGTA+AGG | 0.497546 | 4_3:+9552858 | None:intergenic |
| TTGTCAGCAGTTCCGGTGGT+TGG | 0.497663 | 4_3:+9552222 | None:intergenic |
| AAGATCGTGTGCAAATTTGT+TGG | 0.497732 | 4_3:-9549860 | Msa0628840:three_prime_UTR |
| ATCTGTACTTCAACAAATGC+AGG | 0.500067 | 4_3:-9550916 | Msa0628840:CDS |
| GCTATTCCAATAACATATGC+AGG | 0.507380 | 4_3:+9551335 | None:intergenic |
| TGGCCCTTTAATTGGAACTT+GGG | 0.508372 | 4_3:-9553584 | Msa0628840:CDS |
| TTAACATCATATATATTGAT+GGG | 0.524276 | 4_3:-9550981 | Msa0628840:CDS |
| GAGTCGGATCGTATGATTGT+TGG | 0.525421 | 4_3:-9550746 | Msa0628840:CDS |
| GCTTCCGCACGCGGAACACA+TGG | 0.526869 | 4_3:+9550000 | None:intergenic |
| TGGGAAGCGTCGCAATATCT+CGG | 0.527222 | 4_3:-9550962 | Msa0628840:CDS |
| TAAATAGTCAAAACTAGTGA+GGG | 0.528698 | 4_3:-9554568 | Msa0628840:five_prime_UTR |
| GAAATATATGCTTCCGCACG+CGG | 0.530927 | 4_3:+9549991 | None:intergenic |
| CAATCTTGATAGAAAGAGAA+TGG | 0.532256 | 4_3:-9552747 | Msa0628840:intron |
| CATGAGCATCATAAGTTGTA+GGG | 0.533550 | 4_3:-9549935 | Msa0628840:exon |
| GCATAATTCTTGTATTCACA+TGG | 0.536004 | 4_3:+9549735 | None:intergenic |
| CTAGAAGTAAAGGAGAGACT+TGG | 0.536016 | 4_3:-9548994 | Msa0628840:three_prime_UTR |
| GATAGCACAGAATTGCTAGA+TGG | 0.536121 | 4_3:-9551909 | Msa0628840:CDS |
| TACGATCCGACTCGGGAACA+AGG | 0.540166 | 4_3:+9550756 | None:intergenic |
| TGATAAGTTGACTTATGTAA+AGG | 0.542179 | 4_3:-9553560 | Msa0628840:intron |
| AGGAATACTTCAACTTCTAA+GGG | 0.545260 | 4_3:-9551960 | Msa0628840:CDS |
| GAATAGTGCTTCTGTTTGGG+TGG | 0.545987 | 4_3:-9552081 | Msa0628840:CDS |
| AACAATCATACGATCCGACT+CGG | 0.550433 | 4_3:+9550748 | None:intergenic |
| AAGCCCTTGCTTTAGGACCT+CGG | 0.551594 | 4_3:+9549775 | None:intergenic |
| AGCGTCGCAATATCTCGGCT+TGG | 0.554674 | 4_3:-9550957 | Msa0628840:CDS |
| AGCAAAGCCAGAGCTAGTCC+AGG | 0.555663 | 4_3:+9551798 | None:intergenic |
| ACAATCATACGATCCGACTC+GGG | 0.557650 | 4_3:+9550749 | None:intergenic |
| GCAAGTTGAGGCCTAAAGCT+AGG | 0.567216 | 4_3:-9549908 | Msa0628840:three_prime_UTR |
| AGCCAATGTGACTGCCAGAA+AGG | 0.567367 | 4_3:+9550040 | None:intergenic |
| ATCTTTGTCAGCAGTTCCGG+TGG | 0.568296 | 4_3:+9552218 | None:intergenic |
| TCGGATCGTATGATTGTTGG+AGG | 0.568824 | 4_3:-9550743 | Msa0628840:CDS |
| ATCCATAATGCAGCTAAACA+AGG | 0.569009 | 4_3:+9551017 | None:intergenic |
| TATTATGATTCCCATAACAT+AGG | 0.572039 | 4_3:+9550682 | None:intergenic |
| GCATCATAAGTTGTAGGGTG+AGG | 0.573572 | 4_3:-9549930 | Msa0628840:three_prime_UTR |
| AATCATAATATCTGATCCAA+AGG | 0.575547 | 4_3:-9550669 | Msa0628840:intron |
| TAAAGGGCCAAACAATGCAA+TGG | 0.580311 | 4_3:+9553597 | None:intergenic |
| CATAATTCTTGTATTCACAT+GGG | 0.583271 | 4_3:+9549736 | None:intergenic |
| CTAAATAGTCAAAACTAGTG+AGG | 0.589157 | 4_3:-9554569 | Msa0628840:five_prime_UTR |
| CAGCTATTAGAACTGGACTC+TGG | 0.592489 | 4_3:-9551244 | Msa0628840:CDS |
| TGGCTACTTTGACACAAAGC+AGG | 0.598656 | 4_3:+9552023 | None:intergenic |
| GCATCCATGTGTTCCGCGTG+CGG | 0.599991 | 4_3:-9550004 | Msa0628840:CDS |
| TTTGTTGGACGTCACAGTGA+AGG | 0.600473 | 4_3:-9549845 | Msa0628840:three_prime_UTR |
| TGAGCCGAGGTCCTAAAGCA+AGG | 0.603047 | 4_3:-9549779 | Msa0628840:three_prime_UTR |
| ATGCAGCTAAACAAGGGAGG+AGG | 0.607589 | 4_3:+9551024 | None:intergenic |
| ATAAAATTAGTAGGCTACAC+AGG | 0.608409 | 4_3:-9549815 | Msa0628840:three_prime_UTR |
| AGTTTGCTTAATGTTACTGA+CGG | 0.612034 | 4_3:-9551933 | Msa0628840:CDS |
| ACAGAACCTTGTTCCCGAGT+CGG | 0.615679 | 4_3:-9550762 | Msa0628840:intron |
| GTGATAATCAATATCTGTGG+TGG | 0.616754 | 4_3:-9552799 | Msa0628840:CDS |
| TCCATAATGCAGCTAAACAA+GGG | 0.621645 | 4_3:+9551018 | None:intergenic |
| ATAATTCTTGTATTCACATG+GGG | 0.624810 | 4_3:+9549737 | None:intergenic |
| GAGCCGAGGTCCTAAAGCAA+GGG | 0.629330 | 4_3:-9549778 | Msa0628840:three_prime_UTR |
| TTGTAGGGTGAGGCAAGTTG+AGG | 0.630368 | 4_3:-9549920 | Msa0628840:three_prime_UTR |
| GGAACACATGGATGCAGTAG+AGG | 0.631193 | 4_3:+9550012 | None:intergenic |
| GTAGCCAGAGGAGAATGGAA+AGG | 0.637469 | 4_3:-9552007 | Msa0628840:CDS |
| TATATCCGAAGGCCAACCAC+CGG | 0.639455 | 4_3:-9552234 | Msa0628840:CDS |
| AGGTTGTTAGTTATATCCGA+AGG | 0.647756 | 4_3:-9552245 | Msa0628840:CDS |
| ACAGCAACTTTAGAATGGGA+AGG | 0.654116 | 4_3:-9551362 | Msa0628840:CDS |
| AGGCTGAGTAAGATGAGCCG+AGG | 0.655191 | 4_3:-9549792 | Msa0628840:three_prime_UTR |
| AAATAGTCAAAACTAGTGAG+GGG | 0.673961 | 4_3:-9554567 | Msa0628840:five_prime_UTR |
| CTTTGTGTCAAAGTAGCCAG+AGG | 0.676305 | 4_3:-9552019 | Msa0628840:CDS |
| GTGGTGATAATCAATATCTG+TGG | 0.691366 | 4_3:-9552802 | Msa0628840:CDS |
| ATAATGCAGCTAAACAAGGG+AGG | 0.711149 | 4_3:+9551021 | None:intergenic |
| AAATTAGTAGGCTACACAGG+AGG | 0.711223 | 4_3:-9549812 | Msa0628840:three_prime_UTR |
| GACAAGTAAGGAAACAACAG+TGG | 0.713411 | 4_3:+9552870 | None:intergenic |
| TATGTTATTGGAATAGCACG+AGG | 0.719824 | 4_3:-9551329 | Msa0628840:CDS |
| TATTTAGTATCACAGCACAA+TGG | 0.730983 | 4_3:+9554585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATAAAATATTAT+TGG | - | chr4_3:9550014-9550033 | Msa0628840:CDS | 0.0% |
| !! | TTGATAAAAAATAGAAAAAA+GGG | + | chr4_3:9549120-9549139 | None:intergenic | 10.0% |
| !! | ATTGATAAAAAATAGAAAAA+AGG | + | chr4_3:9549121-9549140 | None:intergenic | 10.0% |
| !!! | TATTATTTCATTTTAATATG+GGG | - | chr4_3:9554173-9554192 | Msa0628840:intron | 10.0% |
| !! | TGATAAAAAATAGAAAAAAG+GGG | + | chr4_3:9549119-9549138 | None:intergenic | 15.0% |
| !!! | TTTAATTTAATTATACGTGT+TGG | + | chr4_3:9549339-9549358 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr4_3:9549364-9549383 | Msa0628840:intron | 15.0% |
| !!! | TTTTATACAAATGAGAAATT+AGG | - | chr4_3:9549569-9549588 | Msa0628840:intron | 15.0% |
| !!! | AATGTCTTCATTTTTTTTAT+TGG | - | chr4_3:9550514-9550533 | Msa0628840:intron | 15.0% |
| !! | TGATTTATACTATGAAATAT+TGG | + | chr4_3:9551119-9551138 | None:intergenic | 15.0% |
| !!! | ATTGTTTTCATATAACTTAT+AGG | + | chr4_3:9551889-9551908 | None:intergenic | 15.0% |
| !! | ATACATATTTATGTATGATT+TGG | - | chr4_3:9552401-9552420 | Msa0628840:intron | 15.0% |
| !! | TTTAACATCATATATATTGA+TGG | - | chr4_3:9552480-9552499 | Msa0628840:intron | 15.0% |
| !! | TTAACATCATATATATTGAT+GGG | - | chr4_3:9552481-9552500 | Msa0628840:intron | 15.0% |
| !!! | AATTGATAATAAAAACAATC+AGG | + | chr4_3:9552673-9552692 | None:intergenic | 15.0% |
| !!! | AAAATGAATGAACATTTTAA+TGG | + | chr4_3:9554081-9554100 | None:intergenic | 15.0% |
| !!! | TGATACTACATAATTTTGTT+GGG | + | chr4_3:9549462-9549481 | None:intergenic | 20.0% |
| !!! | TTGATACTACATAATTTTGT+TGG | + | chr4_3:9549463-9549482 | None:intergenic | 20.0% |
| !! | GTTTATATATGATCAGTATT+TGG | - | chr4_3:9549793-9549812 | Msa0628840:three_prime_UTR | 20.0% |
| !!! | CATAATTCTTTTATATGTTG+CGG | - | chr4_3:9550161-9550180 | Msa0628840:intron | 20.0% |
| !!! | TACTAATCAATTTTCATTGA+AGG | + | chr4_3:9550754-9550773 | None:intergenic | 20.0% |
| !! | CAATATCTAATTCAAACAAT+AGG | + | chr4_3:9550824-9550843 | None:intergenic | 20.0% |
| !! | TTTCATAGTATAAATCATGA+AGG | - | chr4_3:9551122-9551141 | Msa0628840:intron | 20.0% |
| !! | ATTTCACATATGAAACAATA+CGG | + | chr4_3:9552596-9552615 | None:intergenic | 20.0% |
| !! | ACAAAGAAAAGATACATATT+TGG | + | chr4_3:9552852-9552871 | None:intergenic | 20.0% |
| !!! | TGTCTTTTGTTATAAAAAAC+TGG | - | chr4_3:9553325-9553344 | Msa0628840:intron | 20.0% |
| !! | TATTTCACTTTGATAAAGTA+TGG | - | chr4_3:9553488-9553507 | Msa0628840:intron | 20.0% |
| !! | TTCACTAAAAACTAAGTTAA+GGG | - | chr4_3:9553750-9553769 | Msa0628840:intron | 20.0% |
| !! | ACTATAAACTCAAACTAAAA+TGG | + | chr4_3:9554436-9554455 | None:intergenic | 20.0% |
| ! | TAAATAGTCAAAACTAGTGA+GGG | - | chr4_3:9548894-9548913 | Msa0628840:three_prime_UTR | 25.0% |
| !! | GAAGATGAAGAATGAAATTT+TGG | + | chr4_3:9548992-9549011 | None:intergenic | 25.0% |
| ! | CTCATCACTTATTTATACAT+TGG | - | chr4_3:9549016-9549035 | Msa0628840:three_prime_UTR | 25.0% |
| ! | AAAATAGAAAAAAGGGGAAA+AGG | + | chr4_3:9549113-9549132 | None:intergenic | 25.0% |
| !!! | AATTCACACTTTTTGATACA+AGG | + | chr4_3:9549145-9549164 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTTGCAGAATG+TGG | - | chr4_3:9549757-9549776 | Msa0628840:three_prime_UTR | 25.0% |
| !!! | TTTTTGTTTTTGCAGAATGT+GGG | - | chr4_3:9549758-9549777 | Msa0628840:three_prime_UTR | 25.0% |
| !! | TGATAAGTTGACTTATGTAA+AGG | - | chr4_3:9549902-9549921 | Msa0628840:three_prime_UTR | 25.0% |
| !! | GTAGAGATACCAATATATTT+TGG | + | chr4_3:9549934-9549953 | None:intergenic | 25.0% |
| !!! | CTCTACTTTTTATGCAAATA+CGG | - | chr4_3:9549948-9549967 | Msa0628840:exon | 25.0% |
| ! | ATATATCTTTGAACTAATCG+AGG | - | chr4_3:9550046-9550065 | Msa0628840:CDS | 25.0% |
| ! | TATATTCCTTTACATTACAC+AGG | + | chr4_3:9550239-9550258 | None:intergenic | 25.0% |
| ! | CTTTATAACAGAAACTAACA+AGG | + | chr4_3:9550473-9550492 | None:intergenic | 25.0% |
| !!! | TCTTCATTTTTTTTATTGGC+AGG | - | chr4_3:9550518-9550537 | Msa0628840:intron | 25.0% |
| !! | AATCTGTCTTTTATTATTGC+TGG | - | chr4_3:9550567-9550586 | Msa0628840:intron | 25.0% |
| ! | TTTACAAGTCAGTTAGATAT+TGG | - | chr4_3:9550903-9550922 | Msa0628840:CDS | 25.0% |
| !! | CTTTTTACATCTGTGTATAA+TGG | - | chr4_3:9551412-9551431 | Msa0628840:intron | 25.0% |
| ! | GATTTCAAAAATCTCTTATG+TGG | - | chr4_3:9551603-9551622 | Msa0628840:intron | 25.0% |
| ! | GATATTTGATATTGTAGAAC+AGG | + | chr4_3:9552199-9552218 | None:intergenic | 25.0% |
| !!! | ATGATGTTAAAATGCCATTT+TGG | + | chr4_3:9552471-9552490 | None:intergenic | 25.0% |
| ! | TATTATGATTCCCATAACAT+AGG | + | chr4_3:9552783-9552802 | None:intergenic | 25.0% |
| ! | AATCATAATATCTGATCCAA+AGG | - | chr4_3:9552793-9552812 | Msa0628840:CDS | 25.0% |
| !!! | TTAGTTTTTAAACTCACCTT+TGG | + | chr4_3:9552812-9552831 | None:intergenic | 25.0% |
| ! | GAAAAGATACATATTTGGAT+TGG | + | chr4_3:9552847-9552866 | None:intergenic | 25.0% |
| ! | TAGTGAATGAGTTAGAAAAT+TGG | - | chr4_3:9552896-9552915 | Msa0628840:CDS | 25.0% |
| ! | AGTGAATGAGTTAGAAAATT+GGG | - | chr4_3:9552897-9552916 | Msa0628840:CDS | 25.0% |
| ! | AAAAAACATCTTAATGTCTC+TGG | - | chr4_3:9553032-9553051 | Msa0628840:intron | 25.0% |
| ! | ATACATTAAACCTTTACCAA+GGG | - | chr4_3:9553171-9553190 | Msa0628840:intron | 25.0% |
| ! | ATAATTCTTGTATTCACATG+GGG | + | chr4_3:9553728-9553747 | None:intergenic | 25.0% |
| ! | CATAATTCTTGTATTCACAT+GGG | + | chr4_3:9553729-9553748 | None:intergenic | 25.0% |
| ! | CTTCACTAAAAACTAAGTTA+AGG | - | chr4_3:9553749-9553768 | Msa0628840:intron | 25.0% |
| ! | AAAAGCAAGGACTATTAATT+TGG | + | chr4_3:9553970-9553989 | None:intergenic | 25.0% |
| ! | AAGAAAGTGAAATGAAAGAA+TGG | + | chr4_3:9554324-9554343 | None:intergenic | 25.0% |
| !!! | TTTACTTCTAGAACTTTCTT+TGG | + | chr4_3:9554459-9554478 | None:intergenic | 25.0% |
| !!! | AAAGAAAGTTCTAGAAGTAA+AGG | - | chr4_3:9554458-9554477 | Msa0628840:CDS | 25.0% |
| TATTTAGTATCACAGCACAA+TGG | + | chr4_3:9548880-9548899 | None:intergenic | 30.0% | |
| CTAAATAGTCAAAACTAGTG+AGG | - | chr4_3:9548893-9548912 | Msa0628840:three_prime_UTR | 30.0% | |
| AAATAGTCAAAACTAGTGAG+GGG | - | chr4_3:9548895-9548914 | Msa0628840:three_prime_UTR | 30.0% | |
| CTCTTGTTCATGTGATAAAA+TGG | - | chr4_3:9548925-9548944 | Msa0628840:three_prime_UTR | 30.0% | |
| TGAAATCAGAAATTTGTCAG+TGG | - | chr4_3:9549186-9549205 | Msa0628840:intron | 30.0% | |
| !!! | ATTTTTTGTCGCGACAAATT+TGG | + | chr4_3:9549525-9549544 | None:intergenic | 30.0% |
| ! | AGTCTCTGATATTTTCATAC+CGG | + | chr4_3:9549630-9549649 | None:intergenic | 30.0% |
| CAAATAGTAAAGACCCAATT+TGG | + | chr4_3:9549710-9549729 | None:intergenic | 30.0% | |
| ! | TGGGTCTTTACTATTTGTTT+TGG | - | chr4_3:9549713-9549732 | Msa0628840:three_prime_UTR | 30.0% |
| AGGTGTGATCCAAAATATAT+TGG | - | chr4_3:9549922-9549941 | Msa0628840:three_prime_UTR | 30.0% | |
| GGAATATAAAGTTCCTCAAA+TGG | - | chr4_3:9550251-9550270 | Msa0628840:intron | 30.0% | |
| ATATTCATTCTCTCCATTTG+AGG | + | chr4_3:9550267-9550286 | None:intergenic | 30.0% | |
| ! | AGTAGGATAAAAAGTGCAAT+AGG | + | chr4_3:9550308-9550327 | None:intergenic | 30.0% |
| AGTTTGATTCTAAACATGTG+TGG | + | chr4_3:9550344-9550363 | None:intergenic | 30.0% | |
| CAATCTTGATAGAAAGAGAA+TGG | - | chr4_3:9550715-9550734 | Msa0628840:CDS | 30.0% | |
| AACCTCCTTAAAAATTCCTT+TGG | - | chr4_3:9550980-9550999 | Msa0628840:CDS | 30.0% | |
| CTGAATTATGTGAAATGTCT+AGG | - | chr4_3:9551148-9551167 | Msa0628840:intron | 30.0% | |
| AAATGTCTAGGTAAAGCATA+GGG | - | chr4_3:9551160-9551179 | Msa0628840:intron | 30.0% | |
| ATTATGAAGCCAGTTATAAC+AGG | + | chr4_3:9551316-9551335 | None:intergenic | 30.0% | |
| AAGGAATACTTCAACTTCTA+AGG | - | chr4_3:9551501-9551520 | Msa0628840:intron | 30.0% | |
| AGGAATACTTCAACTTCTAA+GGG | - | chr4_3:9551502-9551521 | Msa0628840:intron | 30.0% | |
| ! | AGTTTGCTTAATGTTACTGA+CGG | - | chr4_3:9551529-9551548 | Msa0628840:intron | 30.0% |
| !! | GAATAATCTAGAGTCTGTTT+TGG | - | chr4_3:9551717-9551736 | Msa0628840:intron | 30.0% |
| TTATAGTCATTAAGTGACTC+TGG | - | chr4_3:9551969-9551988 | Msa0628840:CDS | 30.0% | |
| TTCATTCTTAGCTTACAACA+AGG | + | chr4_3:9552030-9552049 | None:intergenic | 30.0% | |
| CAAATATCAGCTATTAGAAC+TGG | - | chr4_3:9552211-9552230 | Msa0628840:CDS | 30.0% | |
| TCCTTTGTTCATAATCATCT+TGG | - | chr4_3:9552647-9552666 | Msa0628840:intron | 30.0% | |
| GTGAATGAGTTAGAAAATTG+GGG | - | chr4_3:9552898-9552917 | Msa0628840:CDS | 30.0% | |
| TGAATGAGTTAGAAAATTGG+GGG | - | chr4_3:9552899-9552918 | Msa0628840:CDS | 30.0% | |
| !! | TTTGAGTTTTCATCATTTGC+AGG | - | chr4_3:9552971-9552990 | Msa0628840:intron | 30.0% |
| TAAAGGTTTAATGTATGACG+GGG | + | chr4_3:9553167-9553186 | None:intergenic | 30.0% | |
| GTAAAGGTTTAATGTATGAC+GGG | + | chr4_3:9553168-9553187 | None:intergenic | 30.0% | |
| GGTAAAGGTTTAATGTATGA+CGG | + | chr4_3:9553169-9553188 | None:intergenic | 30.0% | |
| CATACATTAAACCTTTACCA+AGG | - | chr4_3:9553170-9553189 | Msa0628840:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTTATCC+TGG | + | chr4_3:9553295-9553314 | None:intergenic | 30.0% |
| GTTGAGTTTATTATCCTTTC+TGG | - | chr4_3:9553408-9553427 | Msa0628840:intron | 30.0% | |
| GGTGAAACCATAAAATTAGT+AGG | - | chr4_3:9553638-9553657 | Msa0628840:CDS | 30.0% | |
| ! | TGTGTAGCCTACTAATTTTA+TGG | + | chr4_3:9553648-9553667 | None:intergenic | 30.0% |
| ATAAAATTAGTAGGCTACAC+AGG | - | chr4_3:9553647-9553666 | Msa0628840:CDS | 30.0% | |
| GCATAATTCTTGTATTCACA+TGG | + | chr4_3:9553730-9553749 | None:intergenic | 30.0% | |
| ! | AACTAAGTTAAGGGTATGTT+TGG | - | chr4_3:9553759-9553778 | Msa0628840:intron | 30.0% |
| TCACTTACAAAACAACCAAA+CGG | + | chr4_3:9553850-9553869 | None:intergenic | 30.0% | |
| !! | AAAGAAAGCTTCATTTTGGT+GGG | - | chr4_3:9553872-9553891 | Msa0628840:intron | 30.0% |
| AGTTTCTTCACAATATTGGA+CGG | + | chr4_3:9553917-9553936 | None:intergenic | 30.0% | |
| TTCCAGTTTCTTCACAATAT+TGG | + | chr4_3:9553921-9553940 | None:intergenic | 30.0% | |
| AATATTGTGAAGAAACTGGA+AGG | - | chr4_3:9553920-9553939 | Msa0628840:intron | 30.0% | |
| ATATTGTGAAGAAACTGGAA+GGG | - | chr4_3:9553921-9553940 | Msa0628840:intron | 30.0% | |
| !! | ATTAATAGTCCTTGCTTTTG+AGG | - | chr4_3:9553971-9553990 | Msa0628840:intron | 30.0% |
| ! | GAAAGTGATAAGAAAGTGTA+AGG | + | chr4_3:9554234-9554253 | None:intergenic | 30.0% |
| GAGATGATTGTTTAGTTGTT+TGG | + | chr4_3:9554264-9554283 | None:intergenic | 30.0% | |
| GTGAAATGAAAGAATGGTAA+AGG | + | chr4_3:9554318-9554337 | None:intergenic | 30.0% | |
| AAAGAATGAAAGAGAGTAGA+AGG | + | chr4_3:9554348-9554367 | None:intergenic | 30.0% | |
| GTAAAAGAAAGTAGGATTGA+AGG | + | chr4_3:9554371-9554390 | None:intergenic | 30.0% | |
| AAAGGATGGTAAAAGAAAGT+AGG | + | chr4_3:9554379-9554398 | None:intergenic | 30.0% | |
| TAGTTTGGATGACAAAAGAA+TGG | + | chr4_3:9554403-9554422 | None:intergenic | 30.0% | |
| TGTCATCCAAACTAAATGTT+AGG | - | chr4_3:9554409-9554428 | Msa0628840:intron | 30.0% | |
| AATGGACCTAACATTTAGTT+TGG | + | chr4_3:9554418-9554437 | None:intergenic | 30.0% | |
| GATAGAGTTCTACATACATT+AGG | + | chr4_3:9554552-9554571 | None:intergenic | 30.0% | |
| ATGTATGTAGAACTCTATCT+TGG | - | chr4_3:9554553-9554572 | Msa0628840:five_prime_UTR | 30.0% | |
| ACAAGATCTCACCTATTTAT+AGG | + | chr4_3:9554581-9554600 | None:intergenic | 30.0% | |
| !!! | GTTTTGATTTCTTACTTGCT+TGG | + | chr4_3:9554627-9554646 | None:intergenic | 30.0% |
| !!! | TTGGCCACTTTTTATCTAGA+TGG | - | chr4_3:9549035-9549054 | Msa0628840:three_prime_UTR | 35.0% |
| !!! | TGGCCACTTTTTATCTAGAT+GGG | - | chr4_3:9549036-9549055 | Msa0628840:three_prime_UTR | 35.0% |
| AACCCCATCTAGATAAAAAG+TGG | + | chr4_3:9549042-9549061 | None:intergenic | 35.0% | |
| AAAGAAAAGAGAAACGAACC+TGG | + | chr4_3:9549065-9549084 | None:intergenic | 35.0% | |
| GGGAAAAGGTTGAAATAATG+TGG | + | chr4_3:9549099-9549118 | None:intergenic | 35.0% | |
| TATTTGTGTTTGTGCTTCGT+AGG | - | chr4_3:9549419-9549438 | Msa0628840:intron | 35.0% | |
| TAACAGGGACTAATTTCTTC+CGG | - | chr4_3:9549608-9549627 | Msa0628840:intron | 35.0% | |
| ATGTTGTGTCGTGACATAAT+TGG | - | chr4_3:9549662-9549681 | Msa0628840:intron | 35.0% | |
| TGTTGTGTCGTGACATAATT+GGG | - | chr4_3:9549663-9549682 | Msa0628840:intron | 35.0% | |
| ! | AGAATGTGGGAATTTTCTGT+TGG | - | chr4_3:9549771-9549790 | Msa0628840:three_prime_UTR | 35.0% |
| CAACCCAAGTTCCAATTAAA+GGG | + | chr4_3:9549884-9549903 | None:intergenic | 35.0% | |
| TCAACCCAAGTTCCAATTAA+AGG | + | chr4_3:9549885-9549904 | None:intergenic | 35.0% | |
| !!! | CTAATCGAGGTTTTAAATCG+CGG | - | chr4_3:9550059-9550078 | Msa0628840:CDS | 35.0% |
| GTGGTGATCAACATAAAAGT+AGG | + | chr4_3:9550325-9550344 | None:intergenic | 35.0% | |
| TCATTCTGAACAGTGAGATA+TGG | - | chr4_3:9550381-9550400 | Msa0628840:intron | 35.0% | |
| CAAAGATGAGTAGACAAGTA+AGG | + | chr4_3:9550607-9550626 | None:intergenic | 35.0% | |
| !! | CACATTTTTCTTGTTGCTTG+TGG | - | chr4_3:9550641-9550660 | Msa0628840:intron | 35.0% |
| GTGGTGATAATCAATATCTG+TGG | - | chr4_3:9550660-9550679 | Msa0628840:intron | 35.0% | |
| GTGATAATCAATATCTGTGG+TGG | - | chr4_3:9550663-9550682 | Msa0628840:intron | 35.0% | |
| ! | ATCAATATCTGTGGTGGAAT+TGG | - | chr4_3:9550669-9550688 | Msa0628840:intron | 35.0% |
| GATTAGTATCAGTAGCTAGA+AGG | - | chr4_3:9550766-9550785 | Msa0628840:intron | 35.0% | |
| !! | GTCTTCATTTTTCACCATCA+TGG | - | chr4_3:9550858-9550877 | Msa0628840:intron | 35.0% |
| GATTGTAAAGACAACCATGA+TGG | + | chr4_3:9550875-9550894 | None:intergenic | 35.0% | |
| ! | GTTACGTACGTTAGTTTCAA+AGG | - | chr4_3:9550946-9550965 | Msa0628840:CDS | 35.0% |
| CATTATATACGCAAAGAGGT+TGG | + | chr4_3:9551020-9551039 | None:intergenic | 35.0% | |
| GAGTCATTATATACGCAAAG+AGG | + | chr4_3:9551024-9551043 | None:intergenic | 35.0% | |
| ATGACTCTGTTGATGTTTCA+TGG | - | chr4_3:9551037-9551056 | Msa0628840:intron | 35.0% | |
| TGACTCTGTTGATGTTTCAT+GGG | - | chr4_3:9551038-9551057 | Msa0628840:intron | 35.0% | |
| GAAATGTCTAGGTAAAGCAT+AGG | - | chr4_3:9551159-9551178 | Msa0628840:intron | 35.0% | |
| AAAGTATGCTTTCATTGTGC+AGG | - | chr4_3:9551197-9551216 | Msa0628840:intron | 35.0% | |
| AGGTTGTTAGTTATATCCGA+AGG | - | chr4_3:9551217-9551236 | Msa0628840:intron | 35.0% | |
| CTGCTATAACTTTAGCACTT+TGG | - | chr4_3:9551359-9551378 | Msa0628840:CDS | 35.0% | |
| ! | TTTGGAATAGTGCTTCTGTT+TGG | - | chr4_3:9551377-9551396 | Msa0628840:CDS | 35.0% |
| TTGGAATAGTGCTTCTGTTT+GGG | - | chr4_3:9551378-9551397 | Msa0628840:CDS | 35.0% | |
| CATCACAAAGTGATCTAGAA+AGG | - | chr4_3:9551482-9551501 | Msa0628840:intron | 35.0% | |
| AATTGCTAGATGGAAAAAGC+AGG | - | chr4_3:9551563-9551582 | Msa0628840:intron | 35.0% | |
| AAATCTCTTATGTGGATGCT+TGG | - | chr4_3:9551611-9551630 | Msa0628840:intron | 35.0% | |
| !!! | TGCTATTTTTCACTGTACTC+AGG | - | chr4_3:9551683-9551702 | Msa0628840:intron | 35.0% |
| AAGCAATCTTCGATAGCTAA+TGG | + | chr4_3:9551856-9551875 | None:intergenic | 35.0% | |
| TTAGCTATCGAAGATTGCTT+AGG | - | chr4_3:9551856-9551875 | Msa0628840:CDS | 35.0% | |
| !! | CATGTTTCTGAAGTTGTGTT+TGG | + | chr4_3:9551997-9552016 | None:intergenic | 35.0% |
| ! | TGATGACAGCAACTTTAGAA+TGG | - | chr4_3:9552095-9552114 | Msa0628840:CDS | 35.0% |
| !! | GATGACAGCAACTTTAGAAT+GGG | - | chr4_3:9552096-9552115 | Msa0628840:CDS | 35.0% |
| GGTATACCTGCATATGTTAT+TGG | - | chr4_3:9552121-9552140 | Msa0628840:CDS | 35.0% | |
| GCTATTCCAATAACATATGC+AGG | + | chr4_3:9552130-9552149 | None:intergenic | 35.0% | |
| TATGTTATTGGAATAGCACG+AGG | - | chr4_3:9552133-9552152 | Msa0628840:CDS | 35.0% | |
| GTACAAACTCACAAATGATC+TGG | - | chr4_3:9552256-9552275 | Msa0628840:intron | 35.0% | |
| ! | TATGTATGATTTGGATGCAG+TGG | - | chr4_3:9552410-9552429 | Msa0628840:intron | 35.0% |
| TCCATAATGCAGCTAAACAA+GGG | + | chr4_3:9552447-9552466 | None:intergenic | 35.0% | |
| ATCCATAATGCAGCTAAACA+AGG | + | chr4_3:9552448-9552467 | None:intergenic | 35.0% | |
| ATCTGTACTTCAACAAATGC+AGG | - | chr4_3:9552546-9552565 | Msa0628840:intron | 35.0% | |
| CAAATGCAGGCAAGAAATAA+TGG | - | chr4_3:9552559-9552578 | Msa0628840:intron | 35.0% | |
| GCCAAGATGATTATGAACAA+AGG | + | chr4_3:9552651-9552670 | None:intergenic | 35.0% | |
| GAATTCACTTCAGTCCTTTA+TGG | - | chr4_3:9552748-9552767 | Msa0628840:CDS | 35.0% | |
| TCAGTCCTTTATGGATCTAT+TGG | - | chr4_3:9552757-9552776 | Msa0628840:CDS | 35.0% | |
| ATAGGCCAATAGATCCATAA+AGG | + | chr4_3:9552765-9552784 | None:intergenic | 35.0% | |
| ! | GATCTATTGGCCTATGTTAT+GGG | - | chr4_3:9552770-9552789 | Msa0628840:CDS | 35.0% |
| CTAATGATAAGTCTTCCTCT+AGG | - | chr4_3:9552926-9552945 | Msa0628840:intron | 35.0% | |
| GTCAATAATAAGAAGCCTAG+AGG | + | chr4_3:9552944-9552963 | None:intergenic | 35.0% | |
| ! | GAAGTATATGTGCTACTACA+TGG | + | chr4_3:9553071-9553090 | None:intergenic | 35.0% |
| GCTTATTTGAGCTTATCTAC+TGG | - | chr4_3:9553207-9553226 | Msa0628840:intron | 35.0% | |
| CCTGAACAGATATAGATAAC+AGG | + | chr4_3:9553378-9553397 | None:intergenic | 35.0% | |
| CCTGTTATCTATATCTGTTC+AGG | - | chr4_3:9553375-9553394 | Msa0628840:intron | 35.0% | |
| CATGAGCATCATAAGTTGTA+GGG | - | chr4_3:9553527-9553546 | Msa0628840:intron | 35.0% | |
| AAGATCGTGTGCAAATTTGT+TGG | - | chr4_3:9553602-9553621 | Msa0628840:CDS | 35.0% | |
| ATCTTTCCACTCACTTTCAT+TGG | + | chr4_3:9553787-9553806 | None:intergenic | 35.0% | |
| AAAATAGTGCTTCTACCGTT+TGG | - | chr4_3:9553832-9553851 | Msa0628840:intron | 35.0% | |
| !! | GTTTGGTTGTTTTGTAAGTG+AGG | - | chr4_3:9553849-9553868 | Msa0628840:intron | 35.0% |
| ! | GAGGAAAGAAAGCTTCATTT+TGG | - | chr4_3:9553868-9553887 | Msa0628840:intron | 35.0% |
| ! | GAAAGAAAGCTTCATTTTGG+TGG | - | chr4_3:9553871-9553890 | Msa0628840:intron | 35.0% |
| !! | AAGAAAGCTTCATTTTGGTG+GGG | - | chr4_3:9553873-9553892 | Msa0628840:intron | 35.0% |
| GTCCAATATTGTGAAGAAAC+TGG | - | chr4_3:9553916-9553935 | Msa0628840:intron | 35.0% | |
| TATTGTGAAGAAACTGGAAG+GGG | - | chr4_3:9553922-9553941 | Msa0628840:intron | 35.0% | |
| GACAAAAGAATGGTAAAGGA+TGG | + | chr4_3:9554393-9554412 | None:intergenic | 35.0% | |
| GGATGACAAAAGAATGGTAA+AGG | + | chr4_3:9554397-9554416 | None:intergenic | 35.0% | |
| CTATCTTGGAGCCTATAAAT+AGG | - | chr4_3:9554567-9554586 | Msa0628840:five_prime_UTR | 35.0% | |
| !!! | GGCCACTTTTTATCTAGATG+GGG | - | chr4_3:9549037-9549056 | Msa0628840:three_prime_UTR | 40.0% |
| ! | TTTTATCTAGATGGGGTTCC+AGG | - | chr4_3:9549044-9549063 | Msa0628840:intron | 40.0% |
| TCCTCGAATTAAGCATGTCT+CGG | - | chr4_3:9549276-9549295 | Msa0628840:intron | 40.0% | |
| ! | AATTAAGCATGTCTCGGTGT+CGG | - | chr4_3:9549282-9549301 | Msa0628840:intron | 40.0% |
| TTTACATGCCTGTGTCATGT+CGG | - | chr4_3:9549389-9549408 | Msa0628840:intron | 40.0% | |
| CAAAGAGTGACGACACAATT+TGG | - | chr4_3:9549488-9549507 | Msa0628840:intron | 40.0% | |
| AAAACTGTGAGGGACCAAAT+TGG | - | chr4_3:9549693-9549712 | Msa0628840:intron | 40.0% | |
| AAACTGTGAGGGACCAAATT+GGG | - | chr4_3:9549694-9549713 | Msa0628840:intron | 40.0% | |
| CTGCTCTATGCAGCAATATA+TGG | - | chr4_3:9549825-9549844 | Msa0628840:three_prime_UTR | 40.0% | |
| TCTGCTTCCATTGCATTGTT+TGG | - | chr4_3:9549858-9549877 | Msa0628840:three_prime_UTR | 40.0% | |
| TAAAGGGCCAAACAATGCAA+TGG | + | chr4_3:9549868-9549887 | None:intergenic | 40.0% | |
| GCATTGTTTGGCCCTTTAAT+TGG | - | chr4_3:9549870-9549889 | Msa0628840:three_prime_UTR | 40.0% | |
| TTGGCCCTTTAATTGGAACT+TGG | - | chr4_3:9549877-9549896 | Msa0628840:three_prime_UTR | 40.0% | |
| TGGCCCTTTAATTGGAACTT+GGG | - | chr4_3:9549878-9549897 | Msa0628840:three_prime_UTR | 40.0% | |
| ATATGTTGCGGCCTAAATTG+CGG | - | chr4_3:9550173-9550192 | Msa0628840:intron | 40.0% | |
| ! | TGTCCAGGGTTTTCAAAAGT+GGG | + | chr4_3:9550204-9550223 | None:intergenic | 40.0% |
| ! | TTGTCCAGGGTTTTCAAAAG+TGG | + | chr4_3:9550205-9550224 | None:intergenic | 40.0% |
| CTCTCACCTGTGTAATGTAA+AGG | - | chr4_3:9550230-9550249 | Msa0628840:intron | 40.0% | |
| AAGTGCAATAGGAGACACAA+TGG | + | chr4_3:9550297-9550316 | None:intergenic | 40.0% | |
| ! | ATTGGCAGGTTTTGCAATTG+TGG | - | chr4_3:9550532-9550551 | Msa0628840:intron | 40.0% |
| GACAAGTAAGGAAACAACAG+TGG | + | chr4_3:9550595-9550614 | None:intergenic | 40.0% | |
| GGCTAGAATCTGTAAGTTAG+TGG | - | chr4_3:9550924-9550943 | Msa0628840:CDS | 40.0% | |
| !! | CGCCAAAGGAATTTTTAAGG+AGG | + | chr4_3:9550985-9551004 | None:intergenic | 40.0% |
| ! | GGACGCCAAAGGAATTTTTA+AGG | + | chr4_3:9550988-9551007 | None:intergenic | 40.0% |
| !! | CAAAGAGGTTGGTGAGTAAA+GGG | + | chr4_3:9551009-9551028 | None:intergenic | 40.0% |
| GACTCTGTTGATGTTTCATG+GGG | - | chr4_3:9551039-9551058 | Msa0628840:intron | 40.0% | |
| TTCATCTTTGTCAGCAGTTC+CGG | + | chr4_3:9551250-9551269 | None:intergenic | 40.0% | |
| CTACTTGCACCTGTTATAAC+TGG | - | chr4_3:9551304-9551323 | Msa0628840:CDS | 40.0% | |
| GATAGCACAGAATTGCTAGA+TGG | - | chr4_3:9551553-9551572 | Msa0628840:intron | 40.0% | |
| ! | GCAGGACAAAATTTTCTGAG+TGG | - | chr4_3:9551581-9551600 | Msa0628840:intron | 40.0% |
| CCAAAGCTGAAGCAAGTAAT+TGG | + | chr4_3:9552070-9552089 | None:intergenic | 40.0% | |
| CCAATTACTTGCTTCAGCTT+TGG | - | chr4_3:9552067-9552086 | Msa0628840:CDS | 40.0% | |
| !! | ACAGCAACTTTAGAATGGGA+AGG | - | chr4_3:9552100-9552119 | Msa0628840:CDS | 40.0% |
| ! | CGAGGAATAAGTGCTGTAAT+TGG | - | chr4_3:9552151-9552170 | Msa0628840:CDS | 40.0% |
| ATAATGCAGCTAAACAAGGG+AGG | + | chr4_3:9552444-9552463 | None:intergenic | 40.0% | |
| ! | TCCCTTGTTTAGCTGCATTA+TGG | - | chr4_3:9552443-9552462 | Msa0628840:intron | 40.0% |
| GCTGCATTATGGATCCAAAA+TGG | - | chr4_3:9552454-9552473 | Msa0628840:intron | 40.0% | |
| AACAATCATACGATCCGACT+CGG | + | chr4_3:9552717-9552736 | None:intergenic | 40.0% | |
| ! | GGATCTATTGGCCTATGTTA+TGG | - | chr4_3:9552769-9552788 | Msa0628840:CDS | 40.0% |
| AGTTTGTCTGGATAGGAGAA+AGG | + | chr4_3:9553093-9553112 | None:intergenic | 40.0% | |
| GTGGTAAAGTTTGTCTGGAT+AGG | + | chr4_3:9553100-9553119 | None:intergenic | 40.0% | |
| CTGTTGTGGTAAAGTTTGTC+TGG | + | chr4_3:9553105-9553124 | None:intergenic | 40.0% | |
| TCACCAAGTCTGAAAAGGTT+TGG | + | chr4_3:9553128-9553147 | None:intergenic | 40.0% | |
| GTACTTCACCAAGTCTGAAA+AGG | + | chr4_3:9553133-9553152 | None:intergenic | 40.0% | |
| ! | ACCTTTACCAAGGGCATATT+TGG | - | chr4_3:9553180-9553199 | Msa0628840:intron | 40.0% |
| TCCAAATATGCCCTTGGTAA+AGG | + | chr4_3:9553184-9553203 | None:intergenic | 40.0% | |
| AGCAAATCCAAATATGCCCT+TGG | + | chr4_3:9553190-9553209 | None:intergenic | 40.0% | |
| TAAGCACTTGCGAGACTATT+TGG | - | chr4_3:9553232-9553251 | Msa0628840:intron | 40.0% | |
| GAAAAGTCAATAAGCTCTCC+AGG | - | chr4_3:9553274-9553293 | Msa0628840:intron | 40.0% | |
| CTATATCTGTTCAGGAGTTC+TGG | - | chr4_3:9553383-9553402 | Msa0628840:intron | 40.0% | |
| GCATGAGCATCATAAGTTGT+AGG | - | chr4_3:9553526-9553545 | Msa0628840:intron | 40.0% | |
| AAATTAGTAGGCTACACAGG+AGG | - | chr4_3:9553650-9553669 | Msa0628840:CDS | 40.0% | |
| TTGGATCCAATGAAAGTGAG+TGG | - | chr4_3:9553778-9553797 | Msa0628840:intron | 40.0% | |
| TGAGTGGAAAGATAGCACAA+AGG | - | chr4_3:9553794-9553813 | Msa0628840:intron | 40.0% | |
| TCTTCACAATATTGGACGGA+AGG | + | chr4_3:9553913-9553932 | None:intergenic | 40.0% | |
| AGAAATGTGCCTCAAAAGCA+AGG | + | chr4_3:9553983-9554002 | None:intergenic | 40.0% | |
| CTAGAAGTAAAGGAGAGACT+TGG | - | chr4_3:9554468-9554487 | Msa0628840:CDS | 40.0% | |
| ! | GCTTAATTCGAGGAGTGTGA+AGG | + | chr4_3:9549270-9549289 | None:intergenic | 45.0% |
| ACCGAGACATGCTTAATTCG+AGG | + | chr4_3:9549280-9549299 | None:intergenic | 45.0% | |
| AGTCCCTGACTCATTGTAAC+AGG | - | chr4_3:9549592-9549611 | Msa0628840:intron | 45.0% | |
| GTCCCTGACTCATTGTAACA+GGG | - | chr4_3:9549593-9549612 | Msa0628840:intron | 45.0% | |
| GTCCCTGTTACAATGAGTCA+GGG | + | chr4_3:9549598-9549617 | None:intergenic | 45.0% | |
| AGTCCCTGTTACAATGAGTC+AGG | + | chr4_3:9549599-9549618 | None:intergenic | 45.0% | |
| TGTGACTCACAGTCGCATTA+TGG | - | chr4_3:9550129-9550148 | Msa0628840:intron | 45.0% | |
| ACTCACAGTCGCATTATGGT+TGG | - | chr4_3:9550133-9550152 | Msa0628840:intron | 45.0% | |
| CTCACAGTCGCATTATGGTT+GGG | - | chr4_3:9550134-9550153 | Msa0628840:intron | 45.0% | |
| TCACAGTCGCATTATGGTTG+GGG | - | chr4_3:9550135-9550154 | Msa0628840:intron | 45.0% | |
| !! | TAGCCCACTTTTGAAAACCC+TGG | - | chr4_3:9550198-9550217 | Msa0628840:intron | 45.0% |
| GGTGAGAGATCATTTGTCCA+GGG | + | chr4_3:9550218-9550237 | None:intergenic | 45.0% | |
| AGGTGAGAGATCATTTGTCC+AGG | + | chr4_3:9550219-9550238 | None:intergenic | 45.0% | |
| ! | GCAGGTTTTGCAATTGTGGT+TGG | - | chr4_3:9550536-9550555 | Msa0628840:intron | 45.0% |
| !! | GCAAAGAGGTTGGTGAGTAA+AGG | + | chr4_3:9551010-9551029 | None:intergenic | 45.0% |
| GAATAGTGCTTCTGTTTGGG+TGG | - | chr4_3:9551381-9551400 | Msa0628840:CDS | 45.0% | |
| CTTCTGTTTGGGTGGAGTAT+TGG | - | chr4_3:9551389-9551408 | Msa0628840:intron | 45.0% | |
| ! | TGGCTACTTTGACACAAAGC+AGG | + | chr4_3:9551442-9551461 | None:intergenic | 45.0% |
| CTTTGTGTCAAAGTAGCCAG+AGG | - | chr4_3:9551443-9551462 | Msa0628840:intron | 45.0% | |
| TCAAAGTAGCCAGAGGAGAA+TGG | - | chr4_3:9551450-9551469 | Msa0628840:intron | 45.0% | |
| AAAGCCTTTCCATTCTCCTC+TGG | + | chr4_3:9551462-9551481 | None:intergenic | 45.0% | |
| CAGCAAGAAGTTGTTCTTCC+TGG | - | chr4_3:9551646-9551665 | Msa0628840:intron | 45.0% | |
| CAGCTATTAGAACTGGACTC+TGG | - | chr4_3:9552218-9552237 | Msa0628840:CDS | 45.0% | |
| GAACTGGACTCTGGTCTATT+TGG | - | chr4_3:9552227-9552246 | Msa0628840:CDS | 45.0% | |
| ACTCTGGTCTATTTGGTCTC+AGG | - | chr4_3:9552234-9552253 | Msa0628840:CDS | 45.0% | |
| ACAATCATACGATCCGACTC+GGG | + | chr4_3:9552716-9552735 | None:intergenic | 45.0% | |
| GAGTCGGATCGTATGATTGT+TGG | - | chr4_3:9552716-9552735 | Msa0628840:intron | 45.0% | |
| TCGGATCGTATGATTGTTGG+AGG | - | chr4_3:9552719-9552738 | Msa0628840:intron | 45.0% | |
| CTGAAAAGGTTTGGCTGTTG+TGG | + | chr4_3:9553119-9553138 | None:intergenic | 45.0% | |
| ! | CAGCCAAACCTTTTCAGACT+TGG | - | chr4_3:9553122-9553141 | Msa0628840:intron | 45.0% |
| CACTTGCGAGACTATTTGGA+AGG | - | chr4_3:9553236-9553255 | Msa0628840:intron | 45.0% | |
| ! | ATCCTTTCTGGCAGTCACAT+TGG | - | chr4_3:9553420-9553439 | Msa0628840:intron | 45.0% |
| GAAATATATGCTTCCGCACG+CGG | + | chr4_3:9553474-9553493 | None:intergenic | 45.0% | |
| GCATCATAAGTTGTAGGGTG+AGG | - | chr4_3:9553532-9553551 | Msa0628840:intron | 45.0% | |
| TTTGTTGGACGTCACAGTGA+AGG | - | chr4_3:9553617-9553636 | Msa0628840:CDS | 45.0% | |
| GTTTCTCAAGCCCTTGCTTT+AGG | + | chr4_3:9553697-9553716 | None:intergenic | 45.0% | |
| ! | GACGGAAGGTTTTCAGTCAT+GGG | + | chr4_3:9553899-9553918 | None:intergenic | 45.0% |
| !!! | TATATTATTTCATTTTAATA+TGG | - | chr4_3:9554171-9554190 | Msa0628840:intron | 5.0% |
| !!! | ATATTATTTCATTTTAATAT+GGG | - | chr4_3:9554172-9554191 | Msa0628840:intron | 5.0% |
| ACTGACATCCGACATGACAC+AGG | + | chr4_3:9549400-9549419 | None:intergenic | 50.0% | |
| TGGGTTGCGAGAAAACTGTG+AGG | - | chr4_3:9549682-9549701 | Msa0628840:intron | 50.0% | |
| GGGTTGCGAGAAAACTGTGA+GGG | - | chr4_3:9549683-9549702 | Msa0628840:intron | 50.0% | |
| !! | AGTGGGCTAGACCGCAATTT+AGG | + | chr4_3:9550187-9550206 | None:intergenic | 50.0% |
| ! | GGAGTGCTTTCAACTCTTGC+TGG | - | chr4_3:9550690-9550709 | Msa0628840:CDS | 50.0% |
| TATATCCGAAGGCCAACCAC+CGG | - | chr4_3:9551228-9551247 | Msa0628840:intron | 50.0% | |
| ATCTTTGTCAGCAGTTCCGG+TGG | + | chr4_3:9551247-9551266 | None:intergenic | 50.0% | |
| ! | AACAGGTGCAAGTAGCTTGC+AGG | + | chr4_3:9551299-9551318 | None:intergenic | 50.0% |
| GTAGCCAGAGGAGAATGGAA+AGG | - | chr4_3:9551455-9551474 | Msa0628840:intron | 50.0% | |
| !! | TGTTCTTCCTGGACTAGCTC+TGG | - | chr4_3:9551657-9551676 | Msa0628840:intron | 50.0% |
| ATGCAGCTAAACAAGGGAGG+AGG | + | chr4_3:9552441-9552460 | None:intergenic | 50.0% | |
| !! | TGGGAAGCGTCGCAATATCT+CGG | - | chr4_3:9552500-9552519 | Msa0628840:intron | 50.0% |
| !! | CAATATCTCGGCTTGGACTG+TGG | - | chr4_3:9552512-9552531 | Msa0628840:intron | 50.0% |
| ACAGAACCTTGTTCCCGAGT+CGG | - | chr4_3:9552700-9552719 | Msa0628840:intron | 50.0% | |
| AGCCAATGTGACTGCCAGAA+AGG | + | chr4_3:9553425-9553444 | None:intergenic | 50.0% | |
| GGAACACATGGATGCAGTAG+AGG | + | chr4_3:9553453-9553472 | None:intergenic | 50.0% | |
| TTGTAGGGTGAGGCAAGTTG+AGG | - | chr4_3:9553542-9553561 | Msa0628840:intron | 50.0% | |
| ! | GCAAGTTGAGGCCTAAAGCT+AGG | - | chr4_3:9553554-9553573 | Msa0628840:intron | 50.0% |
| ! | CTGAGACTTCGCCTAGCTTT+AGG | + | chr4_3:9553568-9553587 | None:intergenic | 50.0% |
| !! | AAGCCCTTGCTTTAGGACCT+CGG | + | chr4_3:9553690-9553709 | None:intergenic | 50.0% |
| ! | GGACGGAAGGTTTTCAGTCA+TGG | + | chr4_3:9553900-9553919 | None:intergenic | 50.0% |
| CCTGAAGCTACGGTGCTTAA+GGG | + | chr4_3:9554050-9554069 | None:intergenic | 50.0% | |
| GGTAAGCATGCCTGAAGCTA+CGG | + | chr4_3:9554060-9554079 | None:intergenic | 50.0% | |
| GCTGCATAGAGCAGTGAGTC+TGG | + | chr4_3:9549819-9549838 | None:intergenic | 55.0% | |
| GGTGAGTAAAGGGACGCCAA+AGG | + | chr4_3:9550999-9551018 | None:intergenic | 55.0% | |
| TTGTCAGCAGTTCCGGTGGT+TGG | + | chr4_3:9551243-9551262 | None:intergenic | 55.0% | |
| AGCAAAGCCAGAGCTAGTCC+AGG | + | chr4_3:9551667-9551686 | None:intergenic | 55.0% | |
| AGCGTCGCAATATCTCGGCT+TGG | - | chr4_3:9552505-9552524 | Msa0628840:intron | 55.0% | |
| !! | TACGATCCGACTCGGGAACA+AGG | + | chr4_3:9552709-9552728 | None:intergenic | 55.0% |
| AGGCTGAGTAAGATGAGCCG+AGG | - | chr4_3:9553670-9553689 | Msa0628840:CDS | 55.0% | |
| TGAGCCGAGGTCCTAAAGCA+AGG | - | chr4_3:9553683-9553702 | Msa0628840:CDS | 55.0% | |
| GAGCCGAGGTCCTAAAGCAA+GGG | - | chr4_3:9553684-9553703 | Msa0628840:CDS | 55.0% | |
| ! | CCCTTAAGCACCGTAGCTTC+AGG | - | chr4_3:9554047-9554066 | Msa0628840:intron | 55.0% |
| GCCTGAAGCTACGGTGCTTA+AGG | + | chr4_3:9554051-9554070 | None:intergenic | 55.0% | |
| !! | CAGTTCCGGTGGTTGGCCTT+CGG | + | chr4_3:9551236-9551255 | None:intergenic | 60.0% |
| GCATCCATGTGTTCCGCGTG+CGG | - | chr4_3:9553458-9553477 | Msa0628840:intron | 60.0% | |
| !! | TCTCGGTGTCGGACGCACGT+TGG | - | chr4_3:9549293-9549312 | Msa0628840:intron | 65.0% |
| GCTTCCGCACGCGGAACACA+TGG | + | chr4_3:9553465-9553484 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9548828 | 9554656 | 9548828 | ID=Msa0628840;Name=Msa0628840 |
| chr4_3 | mRNA | 9548828 | 9554656 | 9548828 | ID=Msa0628840-mRNA-1;Parent=Msa0628840;Name=Msa0628840-mRNA-1;_AED=0.29;_eAED=0.29;_QI=116|0.87|0.88|1|0.87|0.77|9|471|512 |
| chr4_3 | exon | 9548828 | 9549058 | 9548828 | ID=Msa0628840-mRNA-1:exon:2884;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9549713 | 9550087 | 9549713 | ID=Msa0628840-mRNA-1:exon:2883;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9550670 | 9550780 | 9550670 | ID=Msa0628840-mRNA-1:exon:2882;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9550890 | 9551054 | 9550890 | ID=Msa0628840-mRNA-1:exon:2881;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9551229 | 9551400 | 9551229 | ID=Msa0628840-mRNA-1:exon:2880;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9551780 | 9552265 | 9551780 | ID=Msa0628840-mRNA-1:exon:2879;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9552748 | 9552944 | 9552748 | ID=Msa0628840-mRNA-1:exon:2878;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9553561 | 9553711 | 9553561 | ID=Msa0628840-mRNA-1:exon:2877;Parent=Msa0628840-mRNA-1 |
| chr4_3 | exon | 9554419 | 9554656 | 9554419 | ID=Msa0628840-mRNA-1:exon:2876;Parent=Msa0628840-mRNA-1 |
| chr4_3 | five_prime_UTR | 9554541 | 9554656 | 9554541 | ID=Msa0628840-mRNA-1:five_prime_utr;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9554419 | 9554540 | 9554419 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9553561 | 9553711 | 9553561 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9552748 | 9552944 | 9552748 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9551780 | 9552265 | 9551780 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9551229 | 9551400 | 9551229 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9550890 | 9551054 | 9550890 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9550670 | 9550780 | 9550670 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | CDS | 9549953 | 9550087 | 9549953 | ID=Msa0628840-mRNA-1:cds;Parent=Msa0628840-mRNA-1 |
| chr4_3 | three_prime_UTR | 9549713 | 9549952 | 9549713 | ID=Msa0628840-mRNA-1:three_prime_utr;Parent=Msa0628840-mRNA-1 |
| chr4_3 | three_prime_UTR | 9548828 | 9549058 | 9548828 | ID=Msa0628840-mRNA-1:three_prime_utr;Parent=Msa0628840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
