AlfalfaGEDB | Msa1017610

M. sativa cultivar zhongmu-4 / Msa1017610

KEGG: K16241
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017610	XP_003622910.1	96.491	171	6	0	1	171	1	171	5.24e-118	341

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017610	sp\|Q8W191\|HYH_ARATH	60.000	130	47	2	39	167	22	147	7.21e-43	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017610	G7L172	96.491	171	6	0	1	171	1	171	2.50e-118	341

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TFs/TRs:

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Gene ID	Type	Classification
Msa1017610	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa1017610	0.808334	3.259618e-50	-8.615850e-47
Msa0001510	Msa1017610	0.817598	3.035276e-52	-8.615850e-47
Msa0002110	Msa1017610	0.897132	1.890831e-76	-8.615850e-47
Msa0002690	Msa1017610	0.875424	3.115903e-68	-8.615850e-47
Msa0002700	Msa1017610	0.871942	4.650018e-67	-8.615850e-47
Msa0003340	Msa1017610	0.819745	9.883260e-53	-8.615850e-47
Msa0003840	Msa1017610	-0.805641	1.210086e-49	-8.615850e-47
Msa0004180	Msa1017610	0.878752	2.178185e-69	-8.615850e-47
Msa0005190	Msa1017610	0.806725	7.155446e-50	-8.615850e-47
Msa0005500	Msa1017610	0.818718	1.693114e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017610	MtrunA17_Chr7g0236891	96.491	171	6	0	1	171	1	171	4.82e-122	341
Msa1017610	MtrunA17_Chr3g0094861	46.154	156	78	1	16	171	169	318	1.33e-33	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017610	AT3G17609.2	60.000	130	47	2	39	167	22	147	7.32e-44	142
Msa1017610	AT3G17609.3	61.157	121	42	2	48	167	2	118	3.71e-41	135
Msa1017610	AT3G17609.4	74.444	90	22	1	79	167	43	132	5.01e-40	132
Msa1017610	AT3G17609.1	74.444	90	22	1	79	167	44	133	5.22e-40	132
Msa1017610	AT5G11260.1	48.175	137	54	3	31	161	26	151	5.85e-33	115
Msa1017610	AT5G11260.2	48.120	133	52	3	31	157	26	147	3.05e-30	108

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Find 70 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGATGAGAGCAATGA+AGG	0.515891	7_1:+36881155	Msa1017610:CDS
AAATAGGTTGCTAAGGAATA+GGG	0.428080	7_1:+36880852	Msa1017610:intron
AACCAGTGCCCCGGGAGCAC+CGG	0.490537	7_1:-36881381	None:intergenic
AACCGGTGCTCCCGGGGCAC+TGG	0.433020	7_1:+36881379	Msa1017610:three_prime_UTR
AATCTATGTGGAGGCATAGG+AGG	0.581180	7_1:-36879311	None:intergenic
ACACGTAAAACAGAGAAGAA+AGG	0.585758	7_1:+36878988	Msa1017610:five_prime_UTR
ACCGATGCTCAACTTCAAGC+AGG	0.560214	7_1:+36880405	Msa1017610:CDS
AGAGCAATGAAGGTTAGACA+GGG	0.702347	7_1:+36881165	Msa1017610:exon
AGATACCTTAACCAGTGCCC+CGG	0.559775	7_1:-36881390	None:intergenic
AGCCAATGATACTGAGATGA+AGG	0.496590	7_1:+36879235	Msa1017610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAACAGAGAAGAAAGGTT+TGG	+	chr7_1:36878993-36879012	Msa1017610:five_prime_UTR	30.0%
AATCTTGTAAGTTTGGACTT+TGG	-	chr7_1:36879492-36879511	None:intergenic	30.0%
ATGATTATCGATCATTGTGA+AGG	-	chr7_1:36879857-36879876	None:intergenic	30.0%
ACATTAACATGTGCTAACAT+TGG	-	chr7_1:36880033-36880052	None:intergenic	30.0%
AATAGTGACTATAGAGTGTA+AGG	-	chr7_1:36880529-36880548	None:intergenic	30.0%
GTCTGACTTTACTTATCTTT+CGG	+	chr7_1:36880781-36880800	Msa1017610:intron	30.0%
AAATAGGTTGCTAAGGAATA+GGG	+	chr7_1:36880852-36880871	Msa1017610:intron	30.0%
TGAGATACGTTCTTCTAAAT+TGG	-	chr7_1:36880962-36880981	None:intergenic	30.0%
GTTCAGATTATGTTACCTTT+CGG	-	chr7_1:36881011-36881030	None:intergenic	30.0%
TACTGGTGTTCATAATGAAT+TGG	-	chr7_1:36881288-36881307	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	36878977	36881458	36878977	ID=Msa1017610;Name=Msa1017610
chr7_1	mRNA	36878977	36881458	36878977	ID=Msa1017610-mRNA-1;Parent=Msa1017610;Name=Msa1017610-mRNA-1;_AED=0.17;_eAED=0.17;_QI=244\|1\|1\|1\|1\|1\|4\|277\|171
chr7_1	exon	36878977	36879335	36878977	ID=Msa1017610-mRNA-1:exon:6954;Parent=Msa1017610-mRNA-1
chr7_1	exon	36880295	36880490	36880295	ID=Msa1017610-mRNA-1:exon:6955;Parent=Msa1017610-mRNA-1
chr7_1	exon	36880858	36881014	36880858	ID=Msa1017610-mRNA-1:exon:6956;Parent=Msa1017610-mRNA-1
chr7_1	exon	36881134	36881458	36881134	ID=Msa1017610-mRNA-1:exon:6957;Parent=Msa1017610-mRNA-1
chr7_1	five_prime_UTR	36878977	36879220	36878977	ID=Msa1017610-mRNA-1:five_prime_utr;Parent=Msa1017610-mRNA-1
chr7_1	CDS	36879221	36879335	36879221	ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1	CDS	36880295	36880490	36880295	ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1	CDS	36880858	36881014	36880858	ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1	CDS	36881134	36881181	36881134	ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1	three_prime_UTR	36881182	36881458	36881182	ID=Msa1017610-mRNA-1:three_prime_utr;Parent=Msa1017610-mRNA-1

Gene Sequence

>Msa1017610

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACTGGAGCACCTTCATCTTCATCTTCTTCATGGAGTAGGTTACCTCCTATGCCTCCACATAGATTTGATGATAGCGATGAAGATCTGTTCGAAGTTCCAGATGTGGAAGGTACACAATGTCAAAGTGTCCATTCTGAGTTAACAAATCAAAATAGTAACCACAATCAAAGCAATGTAACCGATGCTCAACTTCAAGCAGGCTTCCCCGGCAAGCGCCGCCGTGGAAGAAACCCTGCAGACAAGGAACATAGACGTCTCAAAAGGTTGCTAAGGAATAGGGTCTCGGCCCAACAAGCCCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACGTATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAAGGTTAG

Protein sequence

>Msa1017610

MSLSRANDTEMKEAATTGAPSSSSSSWSRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSELTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEFEDKNSNLEERISTLTNENAMLRKVLMNTRPKVDESNEG*