AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1017610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017610 MtrunA17_Chr7g0236891 96.491 171 6 0 1 171 1 171 4.82e-122 341
Msa1017610 MtrunA17_Chr3g0094861 46.154 156 78 1 16 171 169 318 1.33e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017610 AT3G17609.2 60.000 130 47 2 39 167 22 147 7.32e-44 142
Msa1017610 AT3G17609.3 61.157 121 42 2 48 167 2 118 3.71e-41 135
Msa1017610 AT3G17609.4 74.444 90 22 1 79 167 43 132 5.01e-40 132
Msa1017610 AT3G17609.1 74.444 90 22 1 79 167 44 133 5.22e-40 132
Msa1017610 AT5G11260.1 48.175 137 54 3 31 161 26 151 5.85e-33 115
Msa1017610 AT5G11260.2 48.120 133 52 3 31 157 26 147 3.05e-30 108

Find 70 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTGTGTAATTGATTA+AGG 0.121343 7_1:+36881348 Msa1017610:three_prime_UTR
ATATAAGGTTCTTCTAAATT+AGG 0.169445 7_1:+36881188 Msa1017610:three_prime_UTR
TGAGATACGTTCTTCTAAAT+TGG 0.194375 7_1:-36880959 None:intergenic
CTTCATCTTCATCTTCTTCA+TGG 0.213050 7_1:+36879279 Msa1017610:CDS
TCTTCCACGGCGGCGCTTGC+CGG 0.245919 7_1:-36880433 None:intergenic
CTTCCACGGCGGCGCTTGCC+GGG 0.275869 7_1:-36880432 None:intergenic
CAAATAGGTTGCTAAGGAAT+AGG 0.306771 7_1:+36880851 Msa1017610:intron
TCATTGCTCTCATCAACTTT+GGG 0.320674 7_1:-36881152 None:intergenic
TTCATTGCTCTCATCAACTT+TGG 0.343653 7_1:-36881153 None:intergenic
TATAAGGTTCTTCTAAATTA+GGG 0.349631 7_1:+36881189 Msa1017610:three_prime_UTR
GATGGGGCCTAAAAGAGTTT+TGG 0.353153 7_1:-36879047 None:intergenic
TGCTCCCGGGGCACTGGTTA+AGG 0.356514 7_1:+36881385 Msa1017610:three_prime_UTR
TAAATTGTGTAATTGATTAA+GGG 0.359378 7_1:+36881349 Msa1017610:three_prime_UTR
GAAGGTTAGACAGGGATATA+AGG 0.362469 7_1:+36881173 Msa1017610:exon
CATTGTGTACCTTCCACATC+TGG 0.376399 7_1:-36880324 None:intergenic
TACTGGTGTTCATAATGAAT+TGG 0.380711 7_1:-36881285 None:intergenic
CTTCTAAATTAGGGCATTGT+GGG 0.383047 7_1:+36881198 Msa1017610:three_prime_UTR
TTCCTTCATCTCAGTATCAT+TGG 0.395557 7_1:-36879237 None:intergenic
TGATTAAGGGTTGTGTTAAC+CGG 0.397964 7_1:+36881362 Msa1017610:three_prime_UTR
TCGGAGCATGGCGTTCTCAT+TGG 0.400151 7_1:-36880989 None:intergenic
GTTGTGTTAACCGGTGCTCC+CGG 0.404620 7_1:+36881371 Msa1017610:three_prime_UTR
ATGAAGGAAGCTGCAACAAC+TGG 0.409191 7_1:+36879251 Msa1017610:CDS
TTTGATTTGTTAACTCAGAA+TGG 0.409238 7_1:-36880356 None:intergenic
CGTCTATGTTCCTTGTCTGC+AGG 0.409298 7_1:-36880459 None:intergenic
CCTATGCCTCCACATAGATT+TGG 0.415132 7_1:+36879314 Msa1017610:CDS
AAATAGGTTGCTAAGGAATA+GGG 0.428080 7_1:+36880852 Msa1017610:intron
AACCGGTGCTCCCGGGGCAC+TGG 0.433020 7_1:+36881379 Msa1017610:three_prime_UTR
TGTTACTTGAAATTTCTTTG+AGG 0.443146 7_1:+36879165 Msa1017610:five_prime_UTR
TTGTGTTAACCGGTGCTCCC+GGG 0.453179 7_1:+36881372 Msa1017610:three_prime_UTR
GAGAGCAATGAAGGTTAGAC+AGG 0.455193 7_1:+36881164 Msa1017610:exon
TAAAACAGAGAAGAAAGGTT+TGG 0.458287 7_1:+36878993 Msa1017610:five_prime_UTR
CTTCATCTTCTTCATGGAGT+AGG 0.466765 7_1:+36879285 Msa1017610:CDS
CAACTTCAAGCAGGCTTCCC+CGG 0.470731 7_1:+36880414 Msa1017610:CDS
GTCTATGTTCCTTGTCTGCA+GGG 0.478530 7_1:-36880458 None:intergenic
CGGTTACATTGCTTTGATTG+TGG 0.481791 7_1:-36880386 None:intergenic
AACCAGTGCCCCGGGAGCAC+CGG 0.490537 7_1:-36881381 None:intergenic
GTTAATGCACTTGCAATGTT+GGG 0.495633 7_1:-36879115 None:intergenic
AGCCAATGATACTGAGATGA+AGG 0.496590 7_1:+36879235 Msa1017610:CDS
TGTCTGCAGGGTTTCTTCCA+CGG 0.500164 7_1:-36880446 None:intergenic
AAAGTTGATGAGAGCAATGA+AGG 0.515891 7_1:+36881155 Msa1017610:CDS
TTATGTTACCTTTCGGAGCA+TGG 0.517776 7_1:-36881001 None:intergenic
TCTTCTAAATTAGGGCATTG+TGG 0.522870 7_1:+36881197 Msa1017610:three_prime_UTR
TTCCACGGCGGCGCTTGCCG+GGG 0.522944 7_1:-36880431 None:intergenic
ATTGTCTTTGAAAGAGTGAT+GGG 0.523947 7_1:-36879064 None:intergenic
CCAAATCTATGTGGAGGCAT+AGG 0.526031 7_1:-36879314 None:intergenic
TGTTAATGCACTTGCAATGT+TGG 0.535125 7_1:-36879116 None:intergenic
AGGAACATAGACGTCTCAAA+AGG 0.535376 7_1:+36880469 Msa1017610:CDS
CATTGTCTTTGAAAGAGTGA+TGG 0.546775 7_1:-36879065 None:intergenic
GTGTTACAAATAGGTTGCTA+AGG 0.552163 7_1:+36880845 Msa1017610:intron
GATACCTTAACCAGTGCCCC+GGG 0.552240 7_1:-36881389 None:intergenic
TGGAAGAAACCCTGCAGACA+AGG 0.552255 7_1:+36880449 Msa1017610:CDS
TGTGTTAACCGGTGCTCCCG+GGG 0.554531 7_1:+36881373 Msa1017610:three_prime_UTR
AGATACCTTAACCAGTGCCC+CGG 0.559775 7_1:-36881390 None:intergenic
ACCGATGCTCAACTTCAAGC+AGG 0.560214 7_1:+36880405 Msa1017610:CDS
CATGAAGAAGATGAAGATGA+AGG 0.570746 7_1:-36879278 None:intergenic
GTTGCTAAGGAATAGGGTCT+CGG 0.571634 7_1:+36880858 Msa1017610:CDS
AATCTATGTGGAGGCATAGG+AGG 0.581180 7_1:-36879311 None:intergenic
ACACGTAAAACAGAGAAGAA+AGG 0.585758 7_1:+36878988 Msa1017610:five_prime_UTR
GCCTGCTTGAAGTTGAGCAT+CGG 0.588947 7_1:-36880406 None:intergenic
TTCCCCGGCAAGCGCCGCCG+TGG 0.608180 7_1:+36880429 Msa1017610:CDS
TGAGAACGCCATGCTCCGAA+AGG 0.615500 7_1:+36880993 Msa1017610:CDS
TTCTAAATTAGGGCATTGTG+GGG 0.623760 7_1:+36881199 Msa1017610:three_prime_UTR
CACTTACCAAATCTATGTGG+AGG 0.634191 7_1:-36879320 None:intergenic
TCTGTTCGAAGTTCCAGATG+TGG 0.639704 7_1:+36880311 Msa1017610:CDS
TGACACTTACCAAATCTATG+TGG 0.640404 7_1:-36879323 None:intergenic
CTGCAGGGTTTCTTCCACGG+CGG 0.647406 7_1:-36880443 None:intergenic
TTCGAAGTTCCAGATGTGGA+AGG 0.651950 7_1:+36880315 Msa1017610:CDS
ATAATAGTGGTACACATGTG+AGG 0.686831 7_1:-36881234 None:intergenic
TTGTCTTTGAAAGAGTGATG+GGG 0.687323 7_1:-36879063 None:intergenic
AGAGCAATGAAGGTTAGACA+GGG 0.702347 7_1:+36881165 Msa1017610:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTGAATATTGAT+AGG - chr7_1:36879455-36879474 None:intergenic 10.0%
!! TTGTTAAATAAAAATTTAAC+GGG - chr7_1:36879716-36879735 None:intergenic 10.0%
!! ATTATAATTGTAATATGTAT+CGG - chr7_1:36880668-36880687 None:intergenic 10.0%
!! AAGAATATTAAGTATATTGT+TGG + chr7_1:36879568-36879587 Msa1017610:intron 15.0%
!! AAGGTATATATAATATAAGT+TGG + chr7_1:36879630-36879649 Msa1017610:intron 15.0%
!! ATGTCAAATTAAAATTTGAA+GGG - chr7_1:36880173-36880192 None:intergenic 15.0%
!! AATGTCAAATTAAAATTTGA+AGG - chr7_1:36880174-36880193 None:intergenic 15.0%
!! TTAAATTGTGTAATTGATTA+AGG + chr7_1:36881348-36881367 Msa1017610:three_prime_UTR 15.0%
!! TAAATTGTGTAATTGATTAA+GGG + chr7_1:36881349-36881368 Msa1017610:three_prime_UTR 15.0%
!!! ACAAGTTGTTTTTAAATGAT+CGG - chr7_1:36879597-36879616 None:intergenic 20.0%
!! TCAAATTGTTGATGTAAAAA+CGG - chr7_1:36879791-36879810 None:intergenic 20.0%
!! TCAAAATTTGCATTGAATTT+CGG + chr7_1:36879931-36879950 Msa1017610:intron 20.0%
!! AATGCAAAATTGTTACTATT+AGG + chr7_1:36880112-36880131 Msa1017610:intron 20.0%
!!! TAATATGGACTAAATTGAAT+TGG - chr7_1:36880202-36880221 None:intergenic 20.0%
!! ATATAAGGTTCTTCTAAATT+AGG + chr7_1:36881188-36881207 Msa1017610:three_prime_UTR 20.0%
!! TATAAGGTTCTTCTAAATTA+GGG + chr7_1:36881189-36881208 Msa1017610:three_prime_UTR 20.0%
!!! TTTTTGGGAAATAATAATAC+TGG - chr7_1:36881305-36881324 None:intergenic 20.0%
!!! ATGTAATCTATCAGTTTTTT+GGG - chr7_1:36881320-36881339 None:intergenic 20.0%
!!! AATGTAATCTATCAGTTTTT+TGG - chr7_1:36881321-36881340 None:intergenic 20.0%
!! TGTTACTTGAAATTTCTTTG+AGG + chr7_1:36879165-36879184 Msa1017610:five_prime_UTR 25.0%
!! CATATTTTATCCTCAAGTTA+AGG + chr7_1:36879396-36879415 Msa1017610:intron 25.0%
!! AAATAAAAGACCTTAACTTG+AGG - chr7_1:36879409-36879428 None:intergenic 25.0%
! TATGAAGAATCTTGTAAGTT+TGG - chr7_1:36879499-36879518 None:intergenic 25.0%
! ACTTGTTTCATGAAAAGTAA+AGG + chr7_1:36879611-36879630 Msa1017610:intron 25.0%
!!! ATATAAGTTGGTCCATATTA+AGG + chr7_1:36879642-36879661 Msa1017610:intron 25.0%
!!! TATAAGTTGGTCCATATTAA+GGG + chr7_1:36879643-36879662 Msa1017610:intron 25.0%
! TATGCGTGTGTATATTATAA+GGG - chr7_1:36879670-36879689 None:intergenic 25.0%
! ATATGCGTGTGTATATTATA+AGG - chr7_1:36879671-36879690 None:intergenic 25.0%
! TACACACGCATATATTAAAT+TGG + chr7_1:36879678-36879697 Msa1017610:intron 25.0%
! AACTTTGTGATATGATATTG+TGG - chr7_1:36879828-36879847 None:intergenic 25.0%
! AACTACAGACAATTCAAATT+TGG + chr7_1:36880007-36880026 Msa1017610:intron 25.0%
! AAAACAAGTCACGTTTAATA+TGG - chr7_1:36880217-36880236 None:intergenic 25.0%
!!! TTTGATTTGTTAACTCAGAA+TGG - chr7_1:36880359-36880378 None:intergenic 25.0%
!! AAATGACTTGTGTTACAAAT+AGG + chr7_1:36880836-36880855 Msa1017610:intron 25.0%
! ATAACATCATGTTGATCAAA+TGG + chr7_1:36881082-36881101 Msa1017610:intron 25.0%
! TCAAATGGAAATTTATTCGA+TGG + chr7_1:36881097-36881116 Msa1017610:intron 25.0%
TAAAACAGAGAAGAAAGGTT+TGG + chr7_1:36878993-36879012 Msa1017610:five_prime_UTR 30.0%
! TTCTGAACCAAAACTCTTTT+AGG + chr7_1:36879040-36879059 Msa1017610:five_prime_UTR 30.0%
! ATTGTCTTTGAAAGAGTGAT+GGG - chr7_1:36879067-36879086 None:intergenic 30.0%
AATCTTGTAAGTTTGGACTT+TGG - chr7_1:36879492-36879511 None:intergenic 30.0%
!! ATAAGTTGGTCCATATTAAG+GGG + chr7_1:36879644-36879663 Msa1017610:intron 30.0%
ATGATTATCGATCATTGTGA+AGG - chr7_1:36879857-36879876 None:intergenic 30.0%
ACATTAACATGTGCTAACAT+TGG - chr7_1:36880033-36880052 None:intergenic 30.0%
AATAGTGACTATAGAGTGTA+AGG - chr7_1:36880529-36880548 None:intergenic 30.0%
GTCTGACTTTACTTATCTTT+CGG + chr7_1:36880781-36880800 Msa1017610:intron 30.0%
AAATAGGTTGCTAAGGAATA+GGG + chr7_1:36880852-36880871 Msa1017610:intron 30.0%
!!! GTACACTTTTTTTCTTTCAC+GGG - chr7_1:36880893-36880912 None:intergenic 30.0%
!!! CGTACACTTTTTTTCTTTCA+CGG - chr7_1:36880894-36880913 None:intergenic 30.0%
TGAGATACGTTCTTCTAAAT+TGG - chr7_1:36880962-36880981 None:intergenic 30.0%
GTTCAGATTATGTTACCTTT+CGG - chr7_1:36881011-36881030 None:intergenic 30.0%
TACTGGTGTTCATAATGAAT+TGG - chr7_1:36881288-36881307 None:intergenic 30.0%
! CTGGTTAAGGTATCTAAAAA+AGG + chr7_1:36881398-36881417 Msa1017610:three_prime_UTR 30.0%
ACACGTAAAACAGAGAAGAA+AGG + chr7_1:36878988-36879007 Msa1017610:five_prime_UTR 35.0%
! TTGTCTTTGAAAGAGTGATG+GGG - chr7_1:36879066-36879085 None:intergenic 35.0%
! CATTGTCTTTGAAAGAGTGA+TGG - chr7_1:36879068-36879087 None:intergenic 35.0%
GTTAATGCACTTGCAATGTT+GGG - chr7_1:36879118-36879137 None:intergenic 35.0%
TGTTAATGCACTTGCAATGT+TGG - chr7_1:36879119-36879138 None:intergenic 35.0%
TTCCTTCATCTCAGTATCAT+TGG - chr7_1:36879240-36879259 None:intergenic 35.0%
CATGAAGAAGATGAAGATGA+AGG - chr7_1:36879281-36879300 None:intergenic 35.0%
CTTCATCTTCATCTTCTTCA+TGG + chr7_1:36879279-36879298 Msa1017610:CDS 35.0%
TGACACTTACCAAATCTATG+TGG - chr7_1:36879326-36879345 None:intergenic 35.0%
TATTGATAGGCTCTTGACTT+AGG - chr7_1:36879442-36879461 None:intergenic 35.0%
ATTATAAGGGCCCCTTAATA+TGG - chr7_1:36879657-36879676 None:intergenic 35.0%
ATTATCGATCATTGTGAAGG+TGG - chr7_1:36879854-36879873 None:intergenic 35.0%
ATAGACGTCTCAAAAGGTAA+GGG + chr7_1:36880475-36880494 Msa1017610:intron 35.0%
CTCAAACGATTGTTGAACTT+CGG + chr7_1:36880716-36880735 Msa1017610:intron 35.0%
GTGTTACAAATAGGTTGCTA+AGG + chr7_1:36880845-36880864 Msa1017610:intron 35.0%
CAAATAGGTTGCTAAGGAAT+AGG + chr7_1:36880851-36880870 Msa1017610:intron 35.0%
!! TTCGATGGTTTTACTTGTAC+AGG + chr7_1:36881112-36881131 Msa1017610:intron 35.0%
TCATTGCTCTCATCAACTTT+GGG - chr7_1:36881155-36881174 None:intergenic 35.0%
TTCATTGCTCTCATCAACTT+TGG - chr7_1:36881156-36881175 None:intergenic 35.0%
!! AAAGTTGATGAGAGCAATGA+AGG + chr7_1:36881155-36881174 Msa1017610:CDS 35.0%
!! TCTTCTAAATTAGGGCATTG+TGG + chr7_1:36881197-36881216 Msa1017610:three_prime_UTR 35.0%
!! CTTCTAAATTAGGGCATTGT+GGG + chr7_1:36881198-36881217 Msa1017610:three_prime_UTR 35.0%
!! TTCTAAATTAGGGCATTGTG+GGG + chr7_1:36881199-36881218 Msa1017610:three_prime_UTR 35.0%
ATAATAGTGGTACACATGTG+AGG - chr7_1:36881237-36881256 None:intergenic 35.0%
TGATTAAGGGTTGTGTTAAC+CGG + chr7_1:36881362-36881381 Msa1017610:three_prime_UTR 35.0%
AGCCAATGATACTGAGATGA+AGG + chr7_1:36879235-36879254 Msa1017610:CDS 40.0%
CTTCATCTTCTTCATGGAGT+AGG + chr7_1:36879285-36879304 Msa1017610:CDS 40.0%
CACTTACCAAATCTATGTGG+AGG - chr7_1:36879323-36879342 None:intergenic 40.0%
AGATCTTCATCGCTATCATC+TGG - chr7_1:36880294-36880313 None:intergenic 40.0%
CGGTTACATTGCTTTGATTG+TGG - chr7_1:36880389-36880408 None:intergenic 40.0%
AGGAACATAGACGTCTCAAA+AGG + chr7_1:36880469-36880488 Msa1017610:CDS 40.0%
CATAGACGTCTCAAAAGGTA+AGG + chr7_1:36880474-36880493 Msa1017610:intron 40.0%
!! TTTTCTTTCACGGGCTTGTT+GGG - chr7_1:36880884-36880903 None:intergenic 40.0%
! TTTTTCTTTCACGGGCTTGT+TGG - chr7_1:36880885-36880904 None:intergenic 40.0%
TTATGTTACCTTTCGGAGCA+TGG - chr7_1:36881004-36881023 None:intergenic 40.0%
AGAGCAATGAAGGTTAGACA+GGG + chr7_1:36881165-36881184 Msa1017610:exon 40.0%
GAAGGTTAGACAGGGATATA+AGG + chr7_1:36881173-36881192 Msa1017610:exon 40.0%
! GATGGGGCCTAAAAGAGTTT+TGG - chr7_1:36879050-36879069 None:intergenic 45.0%
ATGAAGGAAGCTGCAACAAC+TGG + chr7_1:36879251-36879270 Msa1017610:CDS 45.0%
! AATCTATGTGGAGGCATAGG+AGG - chr7_1:36879314-36879333 None:intergenic 45.0%
! CCAAATCTATGTGGAGGCAT+AGG - chr7_1:36879317-36879336 None:intergenic 45.0%
CCTATGCCTCCACATAGATT+TGG + chr7_1:36879314-36879333 Msa1017610:CDS 45.0%
GGTGACAGTTGGATCTAGAT+TGG - chr7_1:36879961-36879980 None:intergenic 45.0%
TAGATCCAACTGTCACCTGA+GGG + chr7_1:36879964-36879983 Msa1017610:intron 45.0%
TCTGTTCGAAGTTCCAGATG+TGG + chr7_1:36880311-36880330 Msa1017610:CDS 45.0%
TTCGAAGTTCCAGATGTGGA+AGG + chr7_1:36880315-36880334 Msa1017610:CDS 45.0%
CATTGTGTACCTTCCACATC+TGG - chr7_1:36880327-36880346 None:intergenic 45.0%
GTCTATGTTCCTTGTCTGCA+GGG - chr7_1:36880461-36880480 None:intergenic 45.0%
GTTGCTAAGGAATAGGGTCT+CGG + chr7_1:36880858-36880877 Msa1017610:CDS 45.0%
GAGAGCAATGAAGGTTAGAC+AGG + chr7_1:36881164-36881183 Msa1017610:exon 45.0%
!! ATTGTTAAATAAAAATTTAA+CGG - chr7_1:36879717-36879736 None:intergenic 5.0%
!!! ATTTTATAAATATATAATAG+TGG - chr7_1:36881250-36881269 None:intergenic 5.0%
CTAGATCCAACTGTCACCTG+AGG + chr7_1:36879963-36879982 Msa1017610:intron 50.0%
ACCGATGCTCAACTTCAAGC+AGG + chr7_1:36880405-36880424 Msa1017610:CDS 50.0%
GCCTGCTTGAAGTTGAGCAT+CGG - chr7_1:36880409-36880428 None:intergenic 50.0%
TGTCTGCAGGGTTTCTTCCA+CGG - chr7_1:36880449-36880468 None:intergenic 50.0%
TGGAAGAAACCCTGCAGACA+AGG + chr7_1:36880449-36880468 Msa1017610:CDS 50.0%
CGTCTATGTTCCTTGTCTGC+AGG - chr7_1:36880462-36880481 None:intergenic 50.0%
AGATACCTTAACCAGTGCCC+CGG - chr7_1:36881393-36881412 None:intergenic 50.0%
TCACTCCCTCAGGTGACAGT+TGG - chr7_1:36879972-36879991 None:intergenic 55.0%
TCTCGTGCATTCACTCCCTC+AGG - chr7_1:36879982-36880001 None:intergenic 55.0%
CAACTTCAAGCAGGCTTCCC+CGG + chr7_1:36880414-36880433 Msa1017610:CDS 55.0%
TCGGAGCATGGCGTTCTCAT+TGG - chr7_1:36880992-36881011 None:intergenic 55.0%
TGAGAACGCCATGCTCCGAA+AGG + chr7_1:36880993-36881012 Msa1017610:CDS 55.0%
GTTGTGTTAACCGGTGCTCC+CGG + chr7_1:36881371-36881390 Msa1017610:three_prime_UTR 55.0%
TTGTGTTAACCGGTGCTCCC+GGG + chr7_1:36881372-36881391 Msa1017610:three_prime_UTR 55.0%
GATACCTTAACCAGTGCCCC+GGG - chr7_1:36881392-36881411 None:intergenic 55.0%
CTGCAGGGTTTCTTCCACGG+CGG - chr7_1:36880446-36880465 None:intergenic 60.0%
TGTGTTAACCGGTGCTCCCG+GGG + chr7_1:36881373-36881392 Msa1017610:three_prime_UTR 60.0%
!! TGCTCCCGGGGCACTGGTTA+AGG + chr7_1:36881385-36881404 Msa1017610:three_prime_UTR 65.0%
TCTTCCACGGCGGCGCTTGC+CGG - chr7_1:36880436-36880455 None:intergenic 70.0%
! AACCAGTGCCCCGGGAGCAC+CGG - chr7_1:36881384-36881403 None:intergenic 70.0%
TTCCACGGCGGCGCTTGCCG+GGG - chr7_1:36880434-36880453 None:intergenic 75.0%
CTTCCACGGCGGCGCTTGCC+GGG - chr7_1:36880435-36880454 None:intergenic 75.0%
AACCGGTGCTCCCGGGGCAC+TGG + chr7_1:36881379-36881398 Msa1017610:three_prime_UTR 75.0%
!! TTCCCCGGCAAGCGCCGCCG+TGG + chr7_1:36880429-36880448 Msa1017610:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 36878977 36881458 36878977 ID=Msa1017610;Name=Msa1017610
chr7_1 mRNA 36878977 36881458 36878977 ID=Msa1017610-mRNA-1;Parent=Msa1017610;Name=Msa1017610-mRNA-1;_AED=0.17;_eAED=0.17;_QI=244|1|1|1|1|1|4|277|171
chr7_1 exon 36878977 36879335 36878977 ID=Msa1017610-mRNA-1:exon:6954;Parent=Msa1017610-mRNA-1
chr7_1 exon 36880295 36880490 36880295 ID=Msa1017610-mRNA-1:exon:6955;Parent=Msa1017610-mRNA-1
chr7_1 exon 36880858 36881014 36880858 ID=Msa1017610-mRNA-1:exon:6956;Parent=Msa1017610-mRNA-1
chr7_1 exon 36881134 36881458 36881134 ID=Msa1017610-mRNA-1:exon:6957;Parent=Msa1017610-mRNA-1
chr7_1 five_prime_UTR 36878977 36879220 36878977 ID=Msa1017610-mRNA-1:five_prime_utr;Parent=Msa1017610-mRNA-1
chr7_1 CDS 36879221 36879335 36879221 ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1 CDS 36880295 36880490 36880295 ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1 CDS 36880858 36881014 36880858 ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1 CDS 36881134 36881181 36881134 ID=Msa1017610-mRNA-1:cds;Parent=Msa1017610-mRNA-1
chr7_1 three_prime_UTR 36881182 36881458 36881182 ID=Msa1017610-mRNA-1:three_prime_utr;Parent=Msa1017610-mRNA-1
Gene Sequence

>Msa1017610

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACTGGAGCACCTTCATCTTCATCTTCTTCATGGAGTAGGTTACCTCCTATGCCTCCACATAGATTTGATGATAGCGATGAAGATCTGTTCGAAGTTCCAGATGTGGAAGGTACACAATGTCAAAGTGTCCATTCTGAGTTAACAAATCAAAATAGTAACCACAATCAAAGCAATGTAACCGATGCTCAACTTCAAGCAGGCTTCCCCGGCAAGCGCCGCCGTGGAAGAAACCCTGCAGACAAGGAACATAGACGTCTCAAAAGGTTGCTAAGGAATAGGGTCTCGGCCCAACAAGCCCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACGTATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAAGGTTAG

Protein sequence

>Msa1017610

MSLSRANDTEMKEAATTGAPSSSSSSWSRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSELTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEFEDKNSNLEERISTLTNENAMLRKVLMNTRPKVDESNEG*