AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0111000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111000 MtrunA17_Chr1g0169121 98.218 449 7 1 1 449 1 448 0.0 919
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111000 AT1G04620.1 85.106 423 63 0 27 449 40 462 0.0 785

Find 123 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGTTTCCAACAAATTT+TGG 0.060069 1_3:-24378813 None:intergenic
ATTTATACGTAAACCGGATA+TGG 0.201591 1_3:+24379027 Msa0111000:CDS
TGTGGAGCACCACTTGAATT+TGG 0.214139 1_3:+24376376 Msa0111000:CDS
TCATAATGGAGAACTGTTTC+AGG 0.214817 1_3:-24376579 None:intergenic
ATGCTGATTCCGGAATATTT+TGG 0.236876 1_3:-24378039 None:intergenic
GTTTAACAAAATGTATATAA+TGG 0.269221 1_3:-24379495 None:intergenic
GGACTTGGTCGTTGGATATA+TGG 0.270258 1_3:+24378011 Msa0111000:intron
GCTGATGATAAAGCTAAATT+TGG 0.271815 1_3:+24378420 Msa0111000:CDS
CTGTCTCCCAGCAAATGATT+TGG 0.288560 1_3:+24377634 Msa0111000:CDS
TTAGCAGCCATCACTTCTTC+TGG 0.292447 1_3:-24374401 None:intergenic
TAAGAATGCTTGTGCTTTCT+TGG 0.303722 1_3:+24371936 Msa0111000:CDS
CAACAAGCGCAAGGGTATTA+AGG 0.316182 1_3:-24374451 None:intergenic
GCAGGTTCACTTGAAGCATT+TGG 0.351862 1_3:+24377501 Msa0111000:intron
CTAATGGATTCATATGCTAA+TGG 0.352219 1_3:+24379240 Msa0111000:three_prime_UTR
AGAATCCTCCATTTCAAAAC+AGG 0.357846 1_3:+24371810 Msa0111000:CDS
ACCTTTCCTTTCCCCATATC+CGG 0.379150 1_3:-24379040 None:intergenic
ACTTCAACCAAATCATTTGC+TGG 0.381495 1_3:-24377641 None:intergenic
CAGCCTGCCCCAAAATTTGT+TGG 0.382744 1_3:+24378804 Msa0111000:CDS
AATCTTGCATAAACTCATAA+TGG 0.386967 1_3:-24376593 None:intergenic
CCCTAAGTAGGTCTCATCTA+AGG 0.390531 1_3:-24373053 None:intergenic
GTCAAAACTTTGTTTCTAGC+TGG 0.397085 1_3:+24379359 Msa0111000:three_prime_UTR
CTCCCTCTACCATGAACAAC+AGG 0.400077 1_3:-24373019 None:intergenic
TAGGTTCCACCTGGTGGGAT+AGG 0.404466 1_3:-24371853 None:intergenic
TTTCTGTGGTGTAGGTTGCC+AGG 0.407229 1_3:+24376239 Msa0111000:CDS
GGAACTATTTATACGTAAAC+CGG 0.411362 1_3:+24379021 Msa0111000:CDS
AACTATCAGTAATAATCTTT+AGG 0.417887 1_3:+24379400 Msa0111000:three_prime_UTR
TTTATACGTAAACCGGATAT+GGG 0.418788 1_3:+24379028 Msa0111000:CDS
AAACCTTGCTAAAACAGGTC+TGG 0.419885 1_3:-24374281 None:intergenic
TAAATTGTTGCAGGGCTGAT+AGG 0.421045 1_3:+24379134 Msa0111000:intron
AAAGTTCATACAAACTATAT+AGG 0.422544 1_3:-24379423 None:intergenic
GCAATCGAAATGCTTAAATC+AGG 0.427560 1_3:+24374092 Msa0111000:CDS
CGTGCAAATTCAATGCCCTT+TGG 0.430479 1_3:-24378972 None:intergenic
ATGTTGTGTCATGCTGATTC+CGG 0.431412 1_3:-24378049 None:intergenic
AAGAATGCTTGTGCTTTCTT+GGG 0.435235 1_3:+24371937 Msa0111000:CDS
GACTTGGTCGTTGGATATAT+GGG 0.435737 1_3:+24378012 Msa0111000:CDS
TTTGCTGGGAGACAGAAATA+AGG 0.436430 1_3:-24377626 None:intergenic
CGCTTGATTATCATACCATT+CGG 0.443793 1_3:+24379000 Msa0111000:CDS
ATGGGCGTGCCAAAATATTC+CGG 0.444128 1_3:+24378030 Msa0111000:CDS
TTATTGCTCCATCTTGCTAC+AGG 0.449524 1_3:+24377663 Msa0111000:CDS
CCTCCATTTCAAAACAGGAT+TGG 0.452697 1_3:+24371815 Msa0111000:CDS
CAATGGAACCAGGGAAGGAC+TGG 0.454699 1_3:+24376527 Msa0111000:CDS
CAAAACAGGATTGGAGGAAA+AGG 0.456733 1_3:+24371824 Msa0111000:CDS
AAACTGGAACCTGTTGTTCA+TGG 0.461027 1_3:+24373010 Msa0111000:CDS
GCTTGTGCTTTCTTGGGAGA+TGG 0.464642 1_3:+24371943 Msa0111000:CDS
ACCTTAGATGAGACCTACTT+AGG 0.468167 1_3:+24373052 Msa0111000:CDS
ATTTGTCATGGAGACTGTTA+AGG 0.468608 1_3:+24378398 Msa0111000:CDS
GGCACACCTATGCCACTGAT+TGG 0.470899 1_3:-24379273 None:intergenic
CTGGGAGCAAATCTGTCATC+AGG 0.474109 1_3:-24374262 None:intergenic
AAGCACGAATGGAGAGAGAA+AGG 0.476898 1_3:-24371531 None:intergenic
TTCTTCTTAACTTTGTTGTG+TGG 0.477397 1_3:+24371420 Msa0111000:five_prime_UTR
TGACTGCATTGATCTTTAGC+AGG 0.479498 1_3:-24371877 None:intergenic
GTTGCAAACCTTGCTAAAAC+AGG 0.480000 1_3:-24374286 None:intergenic
AGCACGAATGGAGAGAGAAA+GGG 0.480170 1_3:-24371530 None:intergenic
AGTCAGAATATACCTTCGAC+AGG 0.483412 1_3:-24373112 None:intergenic
TGAGTTTATGCAAGATTACA+AGG 0.484461 1_3:+24376599 Msa0111000:CDS
AACCTTGCTAAAACAGGTCT+GGG 0.486509 1_3:-24374280 None:intergenic
AAACTTATCCAGTCCTTCCC+TGG 0.487043 1_3:-24376535 None:intergenic
TATGTTCAGGTTGGTCCAAA+GGG 0.488373 1_3:+24378957 Msa0111000:intron
TTCATAGGGGCTCAATGGAC+TGG 0.489426 1_3:+24374053 Msa0111000:intron
TTTCATCATTGACAGGCTGC+AGG 0.493106 1_3:+24376201 Msa0111000:intron
TAACTTACTGAATTAACTGT+TGG 0.494896 1_3:-24378292 None:intergenic
CCATTTCAAAACAGGATTGG+AGG 0.498238 1_3:+24371818 Msa0111000:CDS
CCTTAGATGAGACCTACTTA+GGG 0.500323 1_3:+24373053 Msa0111000:CDS
TCTCAGAGAAGTGATTCTAA+TGG 0.504819 1_3:+24379224 Msa0111000:exon
CGTGCTTCTTCTTCATCACA+AGG 0.507247 1_3:+24371547 Msa0111000:CDS
GCAGGGTAGGTTCCACCTGG+TGG 0.508024 1_3:-24371859 None:intergenic
CTATGTTCAGGTTGGTCCAA+AGG 0.510081 1_3:+24378956 Msa0111000:intron
GCATTGATCTTTAGCAGGGT+AGG 0.515192 1_3:-24371872 None:intergenic
ACAAATAACCTGTAGCAAGA+TGG 0.517182 1_3:-24377671 None:intergenic
GAACCTGTTGTTCATGGTAG+AGG 0.519967 1_3:+24373016 Msa0111000:CDS
CATAATGGAGAACTGTTTCA+GGG 0.520042 1_3:-24376578 None:intergenic
AGCGCAAGGGTATTAAGGTT+AGG 0.527839 1_3:-24374446 None:intergenic
TTTAAGCATTTCGATTGCAA+TGG 0.529732 1_3:-24374087 None:intergenic
CTTCAACCAAATCATTTGCT+GGG 0.530866 1_3:-24377640 None:intergenic
TTAACAGTCTCCATGACAAA+TGG 0.534122 1_3:-24378396 None:intergenic
TAATACCCTTGCGCTTGTTG+AGG 0.535155 1_3:+24374454 Msa0111000:CDS
ATGAGGAACTGCTGTATGCT+CGG 0.536651 1_3:+24373080 Msa0111000:CDS
ACAACAAAGTTAAGAAGAAG+AGG 0.537039 1_3:-24371416 None:intergenic
ATCCACAATATATTACTGTC+AGG 0.540157 1_3:+24378070 Msa0111000:CDS
CGACAGTGGACAATGGAACC+AGG 0.543521 1_3:+24376517 Msa0111000:intron
TTAAGGTTAGGAGATAATGT+TGG 0.544648 1_3:-24374434 None:intergenic
CATGCTCCAATCAGTGGCAT+AGG 0.547046 1_3:+24379267 Msa0111000:three_prime_UTR
TTCATATGCTAAGAAAATTG+TGG 0.556041 1_3:+24379165 Msa0111000:CDS
GAAGAAGTGATGGCTGCTAA+AGG 0.556856 1_3:+24374404 Msa0111000:CDS
GGTGTAGGTTGCCAGGTCCA+AGG 0.559413 1_3:+24376246 Msa0111000:CDS
TACCTGACAGTAATATATTG+TGG 0.560089 1_3:-24378072 None:intergenic
TGATGAAGAAGAAGCACGAA+TGG 0.570140 1_3:-24371542 None:intergenic
CGTAAACCGGATATGGGGAA+AGG 0.578319 1_3:+24379034 Msa0111000:CDS
GCACGAATGGAGAGAGAAAG+GGG 0.578714 1_3:-24371529 None:intergenic
AATTGCAGCATTAAGATCTG+TGG 0.579563 1_3:+24376358 Msa0111000:intron
CACAAACCTCAACAAGCGCA+AGG 0.579807 1_3:-24374460 None:intergenic
GTTAAACTTCAACATTGTAG+AGG 0.582107 1_3:+24379511 Msa0111000:three_prime_UTR
AGAGAGAAGACATTGCTTAG+CGG 0.583975 1_3:-24371498 None:intergenic
CGAAATGCTTAAATCAGGCA+TGG 0.588143 1_3:+24374097 Msa0111000:CDS
CAGTAGTGGTACCTTGGACC+TGG 0.590071 1_3:-24376257 None:intergenic
GACTGCATTGATCTTTAGCA+GGG 0.590270 1_3:-24371876 None:intergenic
TACGTATAAATAGTTCCGAA+TGG 0.593464 1_3:-24379015 None:intergenic
AAGCTGTCATTTGTGTACAA+AGG 0.596616 1_3:+24374123 Msa0111000:CDS
TTAGCAGGGTAGGTTCCACC+TGG 0.597375 1_3:-24371862 None:intergenic
GGATTACATGCTCCAATCAG+TGG 0.599200 1_3:+24379261 Msa0111000:three_prime_UTR
CCTTATTCGACAGTGGACAA+TGG 0.600320 1_3:+24376510 Msa0111000:intron
GGATAGGCGACCATTTGTCA+TGG 0.606587 1_3:+24378386 Msa0111000:CDS
CAGGGTAGGTTCCACCTGGT+GGG 0.606958 1_3:-24371858 None:intergenic
TTTGGACGGTCATATTGAAG+AGG 0.607502 1_3:+24377519 Msa0111000:CDS
AACCTGTTGTTCATGGTAGA+GGG 0.608220 1_3:+24373017 Msa0111000:CDS
CAGGACACCAGAAGAAGTGA+TGG 0.608289 1_3:+24374394 Msa0111000:intron
GTGGACAATGGAACCAGGGA+AGG 0.613783 1_3:+24376522 Msa0111000:intron
TTCCTCATAGATCCCTAAGT+AGG 0.616756 1_3:-24373065 None:intergenic
ACCGGATATGGGGAAAGGAA+AGG 0.620649 1_3:+24379039 Msa0111000:CDS
GTTCACTTGAAGCATTTGGA+CGG 0.622614 1_3:+24377505 Msa0111000:CDS
TTATACGTAAACCGGATATG+GGG 0.631884 1_3:+24379029 Msa0111000:CDS
AGAGCTTATCCAAATTCAAG+TGG 0.635776 1_3:-24376385 None:intergenic
AGGTCAAAACCTATCCCACC+AGG 0.637225 1_3:+24371844 Msa0111000:CDS
CGGAAACTTAACCCTGTCGA+AGG 0.641199 1_3:+24373100 Msa0111000:CDS
ACAAACCTCAACAAGCGCAA+GGG 0.656935 1_3:-24374459 None:intergenic
AAAGATCAATGCAGTCAGTG+TGG 0.664762 1_3:+24371883 Msa0111000:CDS
GACCTACTTAGGGATCTATG+AGG 0.669965 1_3:+24373063 Msa0111000:CDS
GACAGTGGACAATGGAACCA+GGG 0.676637 1_3:+24376518 Msa0111000:intron
GTCAGAATATACCTTCGACA+GGG 0.677868 1_3:-24373111 None:intergenic
AGTGAACACTGATGATGATG+TGG 0.681537 1_3:-24371454 None:intergenic
ATAATGGAGAACTGTTTCAG+GGG 0.681913 1_3:-24376577 None:intergenic
TCAAAACCTATCCCACCAGG+TGG 0.709148 1_3:+24371847 Msa0111000:CDS
TGAAACGACAGGAATGAACG+TGG 0.713648 1_3:+24378226 Msa0111000:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGGTTTATAATTTTA+TGG - chr1_3:24372956-24372975 None:intergenic 10.0%
!!! TAAGTAAATTTTTTTATGTA+GGG - chr1_3:24375604-24375623 None:intergenic 10.0%
!!! ATAAGTAAATTTTTTTATGT+AGG - chr1_3:24375605-24375624 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr1_3:24375666-24375685 None:intergenic 10.0%
!!! TATTTTGTAGTTATTTTAAA+GGG - chr1_3:24376062-24376081 None:intergenic 10.0%
!!! ATTATTTTAAATAAATCAGT+TGG - chr1_3:24377265-24377284 None:intergenic 10.0%
!!! AACTGATTTATTTAAAATAA+TGG + chr1_3:24377264-24377283 Msa0111000:intron 10.0%
!!! TGAAAAATGTTTTTAAAAAG+TGG + chr1_3:24372234-24372253 Msa0111000:intron 15.0%
!! AAAGATATATTGAGAAAAAT+CGG + chr1_3:24372391-24372410 Msa0111000:intron 15.0%
!!! TAAAATTCGTTATTTTCATA+GGG + chr1_3:24374039-24374058 Msa0111000:intron 15.0%
!! ACAAAAGATATAATTATGTA+TGG + chr1_3:24374656-24374675 Msa0111000:intron 15.0%
!! CAAAAGATATAATTATGTAT+GGG + chr1_3:24374657-24374676 Msa0111000:intron 15.0%
!!! TAAACTTAATCTAAAATTGA+TGG - chr1_3:24375397-24375416 None:intergenic 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG - chr1_3:24375575-24375594 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr1_3:24375637-24375656 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr1_3:24375638-24375657 None:intergenic 15.0%
!!! GTTTTTCAACAATTTTTTAA+AGG - chr1_3:24375886-24375905 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr1_3:24375916-24375935 Msa0111000:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr1_3:24375988-24376007 Msa0111000:intron 15.0%
!!! GTATTTTGTAGTTATTTTAA+AGG - chr1_3:24376063-24376082 None:intergenic 15.0%
!! ATCATAGAATGAATATAAAA+AGG - chr1_3:24376172-24376191 None:intergenic 15.0%
!!! AGTTTATTTGAGTTTTTAAT+TGG + chr1_3:24376665-24376684 Msa0111000:intron 15.0%
!!! TATTTTCTCAATAGAAAAAA+GGG + chr1_3:24377001-24377020 Msa0111000:intron 15.0%
!!! TTTCATTTTGATTTCTTAAA+TGG + chr1_3:24377725-24377744 Msa0111000:intron 15.0%
!!! TTTTATAATGAAAAAACTGA+TGG - chr1_3:24377957-24377976 None:intergenic 15.0%
!!! ATATTTTCTTTTTGATGAAA+TGG + chr1_3:24378639-24378658 Msa0111000:intron 15.0%
!! TACATTTATCAAATTATCAA+TGG - chr1_3:24378882-24378901 None:intergenic 15.0%
!! GTTTAACAAAATGTATATAA+TGG - chr1_3:24379498-24379517 None:intergenic 15.0%
!! TAATCATCTCAAGTTATTAT+TGG - chr1_3:24371653-24371672 None:intergenic 20.0%
!! TGTTGTATTAAGTAATTGTT+AGG + chr1_3:24372091-24372110 Msa0111000:intron 20.0%
!! TCTAATAGCAAAACATAATA+TGG + chr1_3:24372301-24372320 Msa0111000:intron 20.0%
!!! TAATTTGATGGATAATCAAA+TGG - chr1_3:24372339-24372358 None:intergenic 20.0%
!!! TCTCTCTTTTTAAACAATTT+AGG - chr1_3:24372442-24372461 None:intergenic 20.0%
!!! ATCAATTAGTTTACACATAA+TGG + chr1_3:24372620-24372639 Msa0111000:intron 20.0%
!!! TACTTTTTGTGACAAAATAA+TGG + chr1_3:24372699-24372718 Msa0111000:intron 20.0%
!! TATTGAATGATTACTTATCA+TGG + chr1_3:24372730-24372749 Msa0111000:intron 20.0%
!!! ATAAAGAATCGAATCAATTT+TGG - chr1_3:24372971-24372990 None:intergenic 20.0%
!!! CTATTCTTTTCTGTTTTTTT+TGG + chr1_3:24373241-24373260 Msa0111000:intron 20.0%
!! ACTTGTAATTTGAAAGAATT+AGG + chr1_3:24373371-24373390 Msa0111000:intron 20.0%
!! CTTGTAATTTGAAAGAATTA+GGG + chr1_3:24373372-24373391 Msa0111000:intron 20.0%
!! CTATGATCCTAAATAAATTT+AGG - chr1_3:24373499-24373518 None:intergenic 20.0%
!! AATGTTATTATTGCTTGATT+TGG + chr1_3:24373656-24373675 Msa0111000:intron 20.0%
!! TTATACAATGAAATTGTGTT+TGG + chr1_3:24373919-24373938 Msa0111000:intron 20.0%
!!! GTAAAATTCGTTATTTTCAT+AGG + chr1_3:24374038-24374057 Msa0111000:intron 20.0%
!!! AAAATTCGTTATTTTCATAG+GGG + chr1_3:24374040-24374059 Msa0111000:intron 20.0%
!!! AAAAATCTACATGTTTTGAT+TGG + chr1_3:24374153-24374172 Msa0111000:intron 20.0%
!! AGAGATAATTAACATTTAAC+AGG - chr1_3:24374335-24374354 None:intergenic 20.0%
!! TTAATTATCTCTCACTATAT+AGG + chr1_3:24374343-24374362 Msa0111000:intron 20.0%
!! TAAAATACTTCATTTCTTAC+AGG + chr1_3:24374375-24374394 Msa0111000:intron 20.0%
!!! TATATAAAGTTCTAACTGAA+TGG - chr1_3:24375462-24375481 None:intergenic 20.0%
!!! TTTAACCCTATTTTAAAATG+CGG - chr1_3:24375509-24375528 None:intergenic 20.0%
!!! AATAGGGTTAAATATGTTTT+TGG + chr1_3:24375517-24375536 Msa0111000:intron 20.0%
!! AGATATAAGTAACCAAAATA+TGG + chr1_3:24375797-24375816 Msa0111000:intron 20.0%
!!! AATTTTTGCGAGATTTTTTT+TGG + chr1_3:24375832-24375851 Msa0111000:intron 20.0%
!!! TAAAGGGTTAATTATGTTTT+TGG - chr1_3:24376046-24376065 None:intergenic 20.0%
!! TCAAATAAACTAATTCAAAC+AGG - chr1_3:24376656-24376675 None:intergenic 20.0%
!! AATAAGTAGAAAACAACTTA+TGG - chr1_3:24376746-24376765 None:intergenic 20.0%
!!! GTATTTTCTCAATAGAAAAA+AGG + chr1_3:24377000-24377019 Msa0111000:intron 20.0%
!!! TTTTAAATTTTAACTTGAGC+AGG + chr1_3:24377601-24377620 Msa0111000:intron 20.0%
!! AAAACTATCACTTAATTAGA+TGG + chr1_3:24377975-24377994 Msa0111000:intron 20.0%
!!! GATATTTGATTATTTTTCCT+TGG + chr1_3:24378749-24378768 Msa0111000:intron 20.0%
!! AATTTAGTAAAAATGCAATC+AGG - chr1_3:24378833-24378852 None:intergenic 20.0%
!!! GATTGCATTTTTACTAAATT+TGG + chr1_3:24378833-24378852 Msa0111000:CDS 20.0%
!! TATGCAAGATGATTTATTTA+TGG + chr1_3:24379062-24379081 Msa0111000:intron 20.0%
!! AACTATCAGTAATAATCTTT+AGG + chr1_3:24379400-24379419 Msa0111000:three_prime_UTR 20.0%
!! AAAGTTCATACAAACTATAT+AGG - chr1_3:24379426-24379445 None:intergenic 20.0%
! CATCACTCATGAAATAAAAA+GGG - chr1_3:24372012-24372031 None:intergenic 25.0%
! ATTAAGTCCTTTCATACTAT+GGG - chr1_3:24372172-24372191 None:intergenic 25.0%
! TATTAAGTCCTTTCATACTA+TGG - chr1_3:24372173-24372192 None:intergenic 25.0%
! ATAGTATGAAAGGACTTAAT+AGG + chr1_3:24372172-24372191 Msa0111000:intron 25.0%
!!! TCCAACTATGTTTTTACATT+TGG - chr1_3:24372507-24372526 None:intergenic 25.0%
! TTATGCTCATAGGAATATTA+AGG - chr1_3:24372892-24372911 None:intergenic 25.0%
!!! TTCTTTTCTGTTTTTTTTGG+TGG + chr1_3:24373244-24373263 Msa0111000:intron 25.0%
!!! TCTTTTCTGTTTTTTTTGGT+GGG + chr1_3:24373245-24373264 Msa0111000:intron 25.0%
! ATTGAAAAATGCGTCTTAAA+AGG - chr1_3:24373290-24373309 None:intergenic 25.0%
!!! TGCCATTATTTTATTATCCA+GGG + chr1_3:24373415-24373434 Msa0111000:intron 25.0%
! TTCCCTGGATAATAAAATAA+TGG - chr1_3:24373420-24373439 None:intergenic 25.0%
! TGGTATTACTACAAAAAATG+GGG - chr1_3:24373448-24373467 None:intergenic 25.0%
! CTGGTATTACTACAAAAAAT+GGG - chr1_3:24373449-24373468 None:intergenic 25.0%
! ACTGGTATTACTACAAAAAA+TGG - chr1_3:24373450-24373469 None:intergenic 25.0%
! ATGACCTCCTAAATTTATTT+AGG + chr1_3:24373489-24373508 Msa0111000:intron 25.0%
! TGATCCTAAATAAATTTAGG+AGG - chr1_3:24373496-24373515 None:intergenic 25.0%
! ATATCAATGAAACATTTCAG+TGG - chr1_3:24373532-24373551 None:intergenic 25.0%
!!! TCATGGATTACCTTTTAAAT+TGG + chr1_3:24373612-24373631 Msa0111000:intron 25.0%
!!! GTAAAAGCATCCAATTTAAA+AGG - chr1_3:24373625-24373644 None:intergenic 25.0%
!! TTAAATTGGATGCTTTTACA+TGG + chr1_3:24373626-24373645 Msa0111000:intron 25.0%
! TCCTTTATAGTAACTTTATG+AGG + chr1_3:24373682-24373701 Msa0111000:intron 25.0%
! TCCTCATAAAGTTACTATAA+AGG - chr1_3:24373686-24373705 None:intergenic 25.0%
! AGGGAGTAAAATAAATACAA+TGG + chr1_3:24373710-24373729 Msa0111000:intron 25.0%
! TTTGGATAAACAACTTGATT+TGG + chr1_3:24373773-24373792 Msa0111000:intron 25.0%
! AAACACTTATGAAACTGTAA+AGG - chr1_3:24373803-24373822 None:intergenic 25.0%
! CTTATTAAAGCTTAACTAGT+AGG - chr1_3:24373828-24373847 None:intergenic 25.0%
! TTTAATAAGTCAATGCAAAC+CGG + chr1_3:24373839-24373858 Msa0111000:intron 25.0%
! CTTAAATTCCATTAAACTTC+TGG - chr1_3:24373888-24373907 None:intergenic 25.0%
! TATGCATTTATGTCTATGAT+AGG + chr1_3:24373983-24374002 Msa0111000:intron 25.0%
! ATGCATTTATGTCTATGATA+GGG + chr1_3:24373984-24374003 Msa0111000:intron 25.0%
! AAAGTCAAATAAAGAACGAA+AGG - chr1_3:24374195-24374214 None:intergenic 25.0%
!! AAAAGAGGTTTTCATTCAAA+TGG + chr1_3:24374541-24374560 Msa0111000:intron 25.0%
! TAATTATGTATGGGTACTAT+AGG + chr1_3:24374666-24374685 Msa0111000:intron 25.0%
! TACTATAGGAAAAAGAGAAA+TGG + chr1_3:24374680-24374699 Msa0111000:intron 25.0%
! ACTATAGGAAAAAGAGAAAT+GGG + chr1_3:24374681-24374700 Msa0111000:intron 25.0%
! TAGTCTCATTTATAAGTCAT+AGG - chr1_3:24374752-24374771 None:intergenic 25.0%
!!! GATATCTATGATGTTTTGTT+AGG - chr1_3:24374906-24374925 None:intergenic 25.0%
! GCAAAAGTTAAAATGACAAT+GGG - chr1_3:24374932-24374951 None:intergenic 25.0%
! ATCTTCAAACTATTCGAATT+CGG + chr1_3:24374985-24375004 Msa0111000:intron 25.0%
! CTCATAATCAGCAAAAAAAA+TGG - chr1_3:24375024-24375043 None:intergenic 25.0%
!!! CAATGAAGAACTTTTTTTGA+TGG - chr1_3:24375135-24375154 None:intergenic 25.0%
!! ATTATTTCTCTGAACCTTAA+AGG + chr1_3:24375185-24375204 Msa0111000:intron 25.0%
! ATTTAACTATTTGACCTTCT+TGG - chr1_3:24375259-24375278 None:intergenic 25.0%
!!! TTGTAACCGCATTTTAAAAT+AGG + chr1_3:24375500-24375519 Msa0111000:intron 25.0%
!!! TGTAACCGCATTTTAAAATA+GGG + chr1_3:24375501-24375520 Msa0111000:intron 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr1_3:24375862-24375881 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG + chr1_3:24375927-24375946 Msa0111000:intron 25.0%
!! GTAAACAAGTTTTACACTTA+TGG - chr1_3:24376100-24376119 None:intergenic 25.0%
!! TTTGAATTTTCATCATTGAC+AGG + chr1_3:24376194-24376213 Msa0111000:intron 25.0%
!!! TTGCAATGTTTTGATTATGT+TGG + chr1_3:24376465-24376484 Msa0111000:intron 25.0%
! AATCTTGCATAAACTCATAA+TGG - chr1_3:24376596-24376615 None:intergenic 25.0%
!! CTGAAAACTCATGTTTTATA+AGG + chr1_3:24376629-24376648 Msa0111000:intron 25.0%
! ACTAAGTGCTTATAGTATAA+GGG - chr1_3:24376883-24376902 None:intergenic 25.0%
! AACTAAGTGCTTATAGTATA+AGG - chr1_3:24376884-24376903 None:intergenic 25.0%
! ATGTATTAAGAAGATGAGAT+GGG + chr1_3:24376978-24376997 Msa0111000:intron 25.0%
! TTAGTTAGAGTAGATTCAAT+TGG + chr1_3:24377055-24377074 Msa0111000:intron 25.0%
! TAGATTCAATTGGTTAAATG+TGG + chr1_3:24377065-24377084 Msa0111000:intron 25.0%
!! TAAAATAACATTTTGCGAAG+AGG + chr1_3:24377152-24377171 Msa0111000:intron 25.0%
! TCAGGCAATGTAATATAAAT+TGG + chr1_3:24377226-24377245 Msa0111000:intron 25.0%
!!! TATTTTTGTTTGTTAATCCG+TGG - chr1_3:24377572-24377591 None:intergenic 25.0%
!! TCATTTTATGTTGCACTAAT+TGG + chr1_3:24377752-24377771 Msa0111000:intron 25.0%
!!! ATTTTATTTCACCTGAACTT+AGG + chr1_3:24377867-24377886 Msa0111000:intron 25.0%
! AAATGTTTCTTGAAGGAATA+TGG + chr1_3:24378169-24378188 Msa0111000:intron 25.0%
! TAACTTACTGAATTAACTGT+TGG - chr1_3:24378295-24378314 None:intergenic 25.0%
! AAATTAGTGTTCACAAATAG+TGG - chr1_3:24378590-24378609 None:intergenic 25.0%
! AAGTAGAGAAAAGATACTTA+AGG - chr1_3:24378713-24378732 None:intergenic 25.0%
! CAATGGAAAAATTGTTTAAG+AGG - chr1_3:24378865-24378884 None:intergenic 25.0%
! CATTTATATGCTTAACATAG+TGG + chr1_3:24378907-24378926 Msa0111000:intron 25.0%
!!! TAGTGGATTTTTTTGTTTCT+TGG + chr1_3:24378924-24378943 Msa0111000:intron 25.0%
! TTGAAACATAAATTGTTGCA+GGG + chr1_3:24379126-24379145 Msa0111000:intron 25.0%
!! ACAATTTTCTTAGCATATGA+AGG - chr1_3:24379166-24379185 None:intergenic 25.0%
! TTCATATGCTAAGAAAATTG+TGG + chr1_3:24379165-24379184 Msa0111000:CDS 25.0%
!!! GTTTGTATGAACTTTTTTCA+TGG + chr1_3:24379431-24379450 Msa0111000:three_prime_UTR 25.0%
ACAACAAAGTTAAGAAGAAG+AGG - chr1_3:24371419-24371438 None:intergenic 30.0%
! TTCTTCTTAACTTTGTTGTG+TGG + chr1_3:24371420-24371439 Msa0111000:five_prime_UTR 30.0%
GCATCACTCATGAAATAAAA+AGG - chr1_3:24372013-24372032 None:intergenic 30.0%
GTAATTGTTAGGATTATGCT+AGG + chr1_3:24372102-24372121 Msa0111000:intron 30.0%
TTAAGTCCTTTCATACTATG+GGG - chr1_3:24372171-24372190 None:intergenic 30.0%
TTGATGCGTGAATAATTTGA+TGG - chr1_3:24372351-24372370 None:intergenic 30.0%
GCCAAATGTAAAAACATAGT+TGG + chr1_3:24372503-24372522 Msa0111000:intron 30.0%
! TTGTTACACAAAGCTGATTT+AGG + chr1_3:24372768-24372787 Msa0111000:intron 30.0%
ATTAAGGCAATGCTTGAATT+AGG - chr1_3:24372876-24372895 None:intergenic 30.0%
GATTAATGCATTATGCTCAT+AGG - chr1_3:24372902-24372921 None:intergenic 30.0%
TGAGCATAATGCATTAATCA+TGG + chr1_3:24372903-24372922 Msa0111000:intron 30.0%
GAGCATAATGCATTAATCAT+GGG + chr1_3:24372904-24372923 Msa0111000:intron 30.0%
! TCTTTTTCTGTTTCAGAAAC+TGG + chr1_3:24372994-24373013 Msa0111000:intron 30.0%
ACGACACTATATCAAATTCA+AGG + chr1_3:24373176-24373195 Msa0111000:intron 30.0%
AAAATGCGTCTTAAAAGGTA+AGG - chr1_3:24373285-24373304 None:intergenic 30.0%
TAGATTTCCTCTCTATTTAC+AGG - chr1_3:24373352-24373371 None:intergenic 30.0%
!! CTGCCATTATTTTATTATCC+AGG + chr1_3:24373414-24373433 Msa0111000:intron 30.0%
GAAGTATGATAGGAATAAAC+TGG - chr1_3:24373468-24373487 None:intergenic 30.0%
AATACAATGGTCATTAGAGT+AGG + chr1_3:24373723-24373742 Msa0111000:intron 30.0%
ATACAATGGTCATTAGAGTA+GGG + chr1_3:24373724-24373743 Msa0111000:intron 30.0%
ATTTATGTCTATGATAGGGA+TGG + chr1_3:24373988-24374007 Msa0111000:intron 30.0%
! TCATGTTATCAAAGTTCTGA+TGG + chr1_3:24374011-24374030 Msa0111000:intron 30.0%
TTTAAGCATTTCGATTGCAA+TGG - chr1_3:24374090-24374109 None:intergenic 30.0%
TTAAGGTTAGGAGATAATGT+TGG - chr1_3:24374437-24374456 None:intergenic 30.0%
CACTAATCAATGCTATCTTA+AGG - chr1_3:24374490-24374509 None:intergenic 30.0%
GCATGAAAGATATTCAAAAG+AGG + chr1_3:24374526-24374545 Msa0111000:intron 30.0%
! GTTTTCATTCAAATGGATGA+AGG + chr1_3:24374548-24374567 Msa0111000:intron 30.0%
AAACTTCCCTTAGATAGATT+AGG + chr1_3:24374771-24374790 Msa0111000:intron 30.0%
AAGCTTCCTAATCTATCTAA+GGG - chr1_3:24374780-24374799 None:intergenic 30.0%
TAAGCTTCCTAATCTATCTA+AGG - chr1_3:24374781-24374800 None:intergenic 30.0%
GGCAAAAGTTAAAATGACAA+TGG - chr1_3:24374933-24374952 None:intergenic 30.0%
TCTTCAAACTATTCGAATTC+GGG + chr1_3:24374986-24375005 Msa0111000:intron 30.0%
! ATCATTTTACTGTCACAACT+CGG - chr1_3:24375079-24375098 None:intergenic 30.0%
!!! AGTTCTTCATTGTTTTGAAC+TGG + chr1_3:24375143-24375162 Msa0111000:intron 30.0%
TTACAGATCTTTCTCCTTTA+AGG - chr1_3:24375202-24375221 None:intergenic 30.0%
TATTCTTGATACCAACAACT+CGG - chr1_3:24375225-24375244 None:intergenic 30.0%
GATATATGCACAAGAATCAT+TGG - chr1_3:24375358-24375377 None:intergenic 30.0%
AAATTGATGGAACTAAACAG+AGG - chr1_3:24375384-24375403 None:intergenic 30.0%
!!! GGTTACAAAATGAGCTTTTT+TGG - chr1_3:24375488-24375507 None:intergenic 30.0%
!!! TGTTTTTGGTCCCTATAAAA+TGG + chr1_3:24375531-24375550 Msa0111000:intron 30.0%
AAGTAAGGACTAAACTTAGA+AGG - chr1_3:24375560-24375579 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG + chr1_3:24375700-24375719 Msa0111000:intron 30.0%
! TGATTTCTACGTCCATATTT+TGG - chr1_3:24375812-24375831 None:intergenic 30.0%
!!! TTTTGCGAGATTTTTTTTGG+AGG + chr1_3:24375835-24375854 Msa0111000:intron 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG + chr1_3:24375958-24375977 Msa0111000:intron 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG + chr1_3:24375959-24375978 Msa0111000:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr1_3:24376003-24376022 Msa0111000:intron 30.0%
! TTACAAGGTCGTAATTTTGT+AGG + chr1_3:24376018-24376037 Msa0111000:intron 30.0%
! TACAAGGTCGTAATTTTGTA+GGG + chr1_3:24376019-24376038 Msa0111000:intron 30.0%
! CAATGTCTGAAACAGAAAAT+AGG - chr1_3:24376138-24376157 None:intergenic 30.0%
TGAGTTTATGCAAGATTACA+AGG + chr1_3:24376599-24376618 Msa0111000:CDS 30.0%
TAGCTTACGGAAATTGTTTA+TGG + chr1_3:24376784-24376803 Msa0111000:intron 30.0%
TTTAGCTGTTTATCCAAACA+TGG + chr1_3:24376902-24376921 Msa0111000:intron 30.0%
GATGTATTAAGAAGATGAGA+TGG + chr1_3:24376977-24376996 Msa0111000:intron 30.0%
TGGTTAAATGTGGAGAAATA+AGG + chr1_3:24377075-24377094 Msa0111000:intron 30.0%
GGTTAAATGTGGAGAAATAA+GGG + chr1_3:24377076-24377095 Msa0111000:intron 30.0%
AGAAAATTGCATTGTGTGAA+TGG + chr1_3:24377115-24377134 Msa0111000:intron 30.0%
AATACATTGTGGTAGTACTA+AGG - chr1_3:24377204-24377223 None:intergenic 30.0%
TTAGTACTACCACAATGTAT+TGG + chr1_3:24377203-24377222 Msa0111000:intron 30.0%
! GCTTAAAACTGCAGATTTTT+GGG + chr1_3:24377380-24377399 Msa0111000:intron 30.0%
AGTAAGGCAATATATAACCT+TGG - chr1_3:24377459-24377478 None:intergenic 30.0%
GTTTAAACAGAAACTGAGTA+AGG - chr1_3:24377475-24377494 None:intergenic 30.0%
CCGTGGAATAGTAAAATAAA+GGG - chr1_3:24377555-24377574 None:intergenic 30.0%
!!! CCCTTTATTTTACTATTCCA+CGG + chr1_3:24377552-24377571 Msa0111000:intron 30.0%
TCCGTGGAATAGTAAAATAA+AGG - chr1_3:24377556-24377575 None:intergenic 30.0%
!!! AGCTGTTTTGACTATACAAA+TGG + chr1_3:24377799-24377818 Msa0111000:intron 30.0%
ACACGTAGATGTAAAAAACT+CGG - chr1_3:24377897-24377916 None:intergenic 30.0%
! TGATGGTGAAGAAATTAGAA+TGG - chr1_3:24377940-24377959 None:intergenic 30.0%
! TTAGATGGTGTGATATTTTC+AGG + chr1_3:24377990-24378009 Msa0111000:intron 30.0%
ATCCACAATATATTACTGTC+AGG + chr1_3:24378070-24378089 Msa0111000:CDS 30.0%
TACCTGACAGTAATATATTG+TGG - chr1_3:24378075-24378094 None:intergenic 30.0%
TAAAGTGCAAAAAGAGACTT+AGG - chr1_3:24378115-24378134 None:intergenic 30.0%
! GTCTCTTTTTGCACTTTATA+CGG + chr1_3:24378117-24378136 Msa0111000:intron 30.0%
! TCTCTTTTTGCACTTTATAC+GGG + chr1_3:24378118-24378137 Msa0111000:intron 30.0%
CGTACATAAATGTTTCTTGA+AGG + chr1_3:24378162-24378181 Msa0111000:intron 30.0%
! TATTTTGTTCTTGAAACGAC+AGG + chr1_3:24378215-24378234 Msa0111000:intron 30.0%
! AACTTTTCGCTGTATTATTC+AGG + chr1_3:24378362-24378381 Msa0111000:intron 30.0%
! ACTTTTCGCTGTATTATTCA+GGG + chr1_3:24378363-24378382 Msa0111000:intron 30.0%
GCTGATGATAAAGCTAAATT+TGG + chr1_3:24378420-24378439 Msa0111000:CDS 30.0%
AAAGCTAAATTTGGTATGCT+TGG + chr1_3:24378429-24378448 Msa0111000:intron 30.0%
TAAATGTAGGATAAATGTCG+AGG - chr1_3:24378507-24378526 None:intergenic 30.0%
CAGATTCAAGTACTAAATGT+AGG - chr1_3:24378520-24378539 None:intergenic 30.0%
CTACATTTAGTACTTGAATC+TGG + chr1_3:24378518-24378537 Msa0111000:intron 30.0%
AAATAAAGCATGTGAACATG+AGG - chr1_3:24378616-24378635 None:intergenic 30.0%
! AAATGGATTTATCTCTCCAT+GGG + chr1_3:24378656-24378675 Msa0111000:intron 30.0%
AATGTGAAGTTAACTTACCA+TGG + chr1_3:24378681-24378700 Msa0111000:intron 30.0%
GATACTTAAGGTAAAAACCA+TGG - chr1_3:24378701-24378720 None:intergenic 30.0%
TGATTAAATCAGACATTCCA+AGG - chr1_3:24378769-24378788 None:intergenic 30.0%
TTGGAATGTCTGATTTAATC+AGG + chr1_3:24378768-24378787 Msa0111000:intron 30.0%
! TCAGGTTTCCAACAAATTTT+GGG - chr1_3:24378815-24378834 None:intergenic 30.0%
! ATCAGGTTTCCAACAAATTT+TGG - chr1_3:24378816-24378835 None:intergenic 30.0%
TACGTATAAATAGTTCCGAA+TGG - chr1_3:24379018-24379037 None:intergenic 30.0%
GGAACTATTTATACGTAAAC+CGG + chr1_3:24379021-24379040 Msa0111000:CDS 30.0%
ATTTATACGTAAACCGGATA+TGG + chr1_3:24379027-24379046 Msa0111000:CDS 30.0%
TTTATACGTAAACCGGATAT+GGG + chr1_3:24379028-24379047 Msa0111000:CDS 30.0%
GTTGAAACATAAATTGTTGC+AGG + chr1_3:24379125-24379144 Msa0111000:intron 30.0%
GTGGAAATGTACAACAAAAA+TGG + chr1_3:24379184-24379203 Msa0111000:CDS 30.0%
!! CTAATGGATTCATATGCTAA+TGG + chr1_3:24379240-24379259 Msa0111000:three_prime_UTR 30.0%
! TTTTTCATGGTACACAATAC+AGG + chr1_3:24379444-24379463 Msa0111000:three_prime_UTR 30.0%
GAGAAAAGAGAAGTGAAGAA+AGG - chr1_3:24371762-24371781 None:intergenic 35.0%
AGAATCCTCCATTTCAAAAC+AGG + chr1_3:24371810-24371829 Msa0111000:CDS 35.0%
TAAGAATGCTTGTGCTTTCT+TGG + chr1_3:24371936-24371955 Msa0111000:CDS 35.0%
AAGAATGCTTGTGCTTTCTT+GGG + chr1_3:24371937-24371956 Msa0111000:CDS 35.0%
TTAGGATTATGCTAGGAGTA+GGG + chr1_3:24372109-24372128 Msa0111000:intron 35.0%
!! TTGATTTGGTTACACAAAGG+AGG - chr1_3:24372148-24372167 None:intergenic 35.0%
! TTCATACTATGGGGTTGATT+TGG - chr1_3:24372162-24372181 None:intergenic 35.0%
AATCAACCCCATAGTATGAA+AGG + chr1_3:24372162-24372181 Msa0111000:intron 35.0%
CCTTACAAAACCTGCTTATA+AGG - chr1_3:24372271-24372290 None:intergenic 35.0%
!! CCTTATAAGCAGGTTTTGTA+AGG + chr1_3:24372268-24372287 Msa0111000:intron 35.0%
! TGCTACCAACTGATGATTTT+TGG + chr1_3:24372564-24372583 Msa0111000:intron 35.0%
TGGTTCCAAAAATCATCAGT+TGG - chr1_3:24372572-24372591 None:intergenic 35.0%
!!! GATGATTTTTGGAACCAAAG+CGG + chr1_3:24372575-24372594 Msa0111000:intron 35.0%
ACATCAGAATGACTGCTTAT+TGG - chr1_3:24372652-24372671 None:intergenic 35.0%
CTCTGATATGTGACATTGAT+AGG + chr1_3:24373315-24373334 Msa0111000:intron 35.0%
! TTGAAAGAATTAGGGCCTTT+TGG + chr1_3:24373380-24373399 Msa0111000:intron 35.0%
AAAAATGGGGAAAAATTCCC+TGG - chr1_3:24373435-24373454 None:intergenic 35.0%
CGGTTCAAACTAAATGCTAA+AGG - chr1_3:24373569-24373588 None:intergenic 35.0%
! GTTTGAACCGATTTCAGTTT+CGG + chr1_3:24373579-24373598 Msa0111000:intron 35.0%
TGATAGACCGAAACTGAAAT+CGG - chr1_3:24373589-24373608 None:intergenic 35.0%
! TTGGATGCTTTTACATGGTA+CGG + chr1_3:24373631-24373650 Msa0111000:intron 35.0%
AGTAACTTTATGAGGACATG+AGG + chr1_3:24373690-24373709 Msa0111000:intron 35.0%
GTAACTTTATGAGGACATGA+GGG + chr1_3:24373691-24373710 Msa0111000:intron 35.0%
!! TCAATGACTAAGGCTTTGTT+TGG + chr1_3:24373755-24373774 Msa0111000:intron 35.0%
CCTATCCAAAAACTCAATGA+GGG - chr1_3:24373865-24373884 None:intergenic 35.0%
! TTATTTTCATAGGGGCTCAA+TGG + chr1_3:24374048-24374067 Msa0111000:intron 35.0%
GCAATCGAAATGCTTAAATC+AGG + chr1_3:24374092-24374111 Msa0111000:CDS 35.0%
! AAGCTGTCATTTGTGTACAA+AGG + chr1_3:24374123-24374142 Msa0111000:CDS 35.0%
! TCTAAGGTGTTCTACTATCT+TGG + chr1_3:24374594-24374613 Msa0111000:intron 35.0%
GGTATCATGTGAAACATGAT+AGG + chr1_3:24374615-24374634 Msa0111000:intron 35.0%
GAAAAAGAGAAATGGGAGTT+AGG + chr1_3:24374688-24374707 Msa0111000:intron 35.0%
GGACTAAACTACAGTTCATT+AGG - chr1_3:24374731-24374750 None:intergenic 35.0%
AGCATAGGAGATAAAAGCTA+CGG + chr1_3:24374831-24374850 Msa0111000:intron 35.0%
TCTTCAAAAACTAGGGAAAC+TGG - chr1_3:24374866-24374885 None:intergenic 35.0%
TGGAGGATCTTCAAAAACTA+GGG - chr1_3:24374873-24374892 None:intergenic 35.0%
ATGGAGGATCTTCAAAAACT+AGG - chr1_3:24374874-24374893 None:intergenic 35.0%
! TTTTGTTAGGATCCTAGCAA+TGG - chr1_3:24374893-24374912 None:intergenic 35.0%
! GAGAGCACATGACAAATTAA+AGG - chr1_3:24374954-24374973 None:intergenic 35.0%
!! TGCTGATTATGAGAGTTTTG+AGG + chr1_3:24375031-24375050 Msa0111000:intron 35.0%
! ATAACTTGTAGAGTCCAAGA+AGG + chr1_3:24375242-24375261 Msa0111000:intron 35.0%
!!! TTTTTTTTTTCCTCGTCGAG+AGG - chr1_3:24375308-24375327 None:intergenic 35.0%
TCGACGAGGAAAAAAAAAAC+TGG + chr1_3:24375309-24375328 Msa0111000:intron 35.0%
!! TAGAAGGTCGCCATTTTATA+GGG - chr1_3:24375544-24375563 None:intergenic 35.0%
!! TTAGAAGGTCGCCATTTTAT+AGG - chr1_3:24375545-24375564 None:intergenic 35.0%
AGAATAAACCTTCACAGTAG+TGG - chr1_3:24376274-24376293 None:intergenic 35.0%
TACAACATAACCAGTCACAA+TGG - chr1_3:24376320-24376339 None:intergenic 35.0%
AATTGCAGCATTAAGATCTG+TGG + chr1_3:24376358-24376377 Msa0111000:intron 35.0%
AGAGCTTATCCAAATTCAAG+TGG - chr1_3:24376388-24376407 None:intergenic 35.0%
! ATAATGGAGAACTGTTTCAG+GGG - chr1_3:24376580-24376599 None:intergenic 35.0%
! CATAATGGAGAACTGTTTCA+GGG - chr1_3:24376581-24376600 None:intergenic 35.0%
! TCATAATGGAGAACTGTTTC+AGG - chr1_3:24376582-24376601 None:intergenic 35.0%
! GGACAGAAACTTTTCATCAA+AGG - chr1_3:24377183-24377202 None:intergenic 35.0%
! AGACTTTTCTATAACCTCCA+TGG + chr1_3:24377316-24377335 Msa0111000:intron 35.0%
! GGCTTAAAACTGCAGATTTT+TGG + chr1_3:24377379-24377398 Msa0111000:intron 35.0%
! ACAGTGTTATTGATTGCGAA+TGG - chr1_3:24377422-24377441 None:intergenic 35.0%
! TGTCTCTTGCTTTATTACCA+AGG + chr1_3:24377439-24377458 Msa0111000:intron 35.0%
CAGTTTCTGTTTAAACTTCC+TGG + chr1_3:24377479-24377498 Msa0111000:intron 35.0%
CTTCAACCAAATCATTTGCT+GGG - chr1_3:24377643-24377662 None:intergenic 35.0%
ACTTCAACCAAATCATTTGC+TGG - chr1_3:24377644-24377663 None:intergenic 35.0%
ACAAATAACCTGTAGCAAGA+TGG - chr1_3:24377674-24377693 None:intergenic 35.0%
!!! ATGCTGATTCCGGAATATTT+TGG - chr1_3:24378042-24378061 None:intergenic 35.0%
!!! TATCTGTTTTTTCGAGAGAG+AGG - chr1_3:24378341-24378360 None:intergenic 35.0%
! CTTTTCGCTGTATTATTCAG+GGG + chr1_3:24378364-24378383 Msa0111000:intron 35.0%
! TTTTCGCTGTATTATTCAGG+GGG + chr1_3:24378365-24378384 Msa0111000:intron 35.0%
TTAACAGTCTCCATGACAAA+TGG - chr1_3:24378399-24378418 None:intergenic 35.0%
ATTTGTCATGGAGACTGTTA+AGG + chr1_3:24378398-24378417 Msa0111000:CDS 35.0%
TAAACCACAATTGACAACAC+TGG - chr1_3:24378545-24378564 None:intergenic 35.0%
! GAAATGGATTTATCTCTCCA+TGG + chr1_3:24378655-24378674 Msa0111000:intron 35.0%
TGTCTGATTTAATCAGGAAG+AGG + chr1_3:24378774-24378793 Msa0111000:intron 35.0%
! CAGGTTTCCAACAAATTTTG+GGG - chr1_3:24378814-24378833 None:intergenic 35.0%
! TCTGTTTTCTATGTTCAGGT+TGG + chr1_3:24378948-24378967 Msa0111000:intron 35.0%
CGCTTGATTATCATACCATT+CGG + chr1_3:24379000-24379019 Msa0111000:CDS 35.0%
TTATACGTAAACCGGATATG+GGG + chr1_3:24379029-24379048 Msa0111000:CDS 35.0%
TCTCAGAGAAGTGATTCTAA+TGG + chr1_3:24379224-24379243 Msa0111000:exon 35.0%
! AGACACAATGCATATTTTGC+AGG - chr1_3:24379297-24379316 None:intergenic 35.0%
!! GTCAAAACTTTGTTTCTAGC+TGG + chr1_3:24379359-24379378 Msa0111000:three_prime_UTR 35.0%
! AGTGAACACTGATGATGATG+TGG - chr1_3:24371457-24371476 None:intergenic 40.0%
AGAGAGAAGACATTGCTTAG+CGG - chr1_3:24371501-24371520 None:intergenic 40.0%
! TGATGAAGAAGAAGCACGAA+TGG - chr1_3:24371545-24371564 None:intergenic 40.0%
AGAGAAAAAGAAGAGGTGGT+AGG - chr1_3:24371582-24371601 None:intergenic 40.0%
ATGCAGAGAAAAAGAAGAGG+TGG - chr1_3:24371586-24371605 None:intergenic 40.0%
! ACCTCTTCTTTTTCTCTGCA+TGG + chr1_3:24371585-24371604 Msa0111000:intron 40.0%
ACCATGCAGAGAAAAAGAAG+AGG - chr1_3:24371589-24371608 None:intergenic 40.0%
AATTAGACATGTCCCTCACA+CGG - chr1_3:24371711-24371730 None:intergenic 40.0%
AAAGGTTGCATGCATAAGCA+CGG - chr1_3:24371744-24371763 None:intergenic 40.0%
! TATCAGTCTCACCCTTCTTT+TGG + chr1_3:24371783-24371802 Msa0111000:intron 40.0%
GGATTCTGCTACCAAAAGAA+GGG - chr1_3:24371797-24371816 None:intergenic 40.0%
AGGATTCTGCTACCAAAAGA+AGG - chr1_3:24371798-24371817 None:intergenic 40.0%
!!! CCAATCCTGTTTTGAAATGG+AGG - chr1_3:24371818-24371837 None:intergenic 40.0%
CCTCCATTTCAAAACAGGAT+TGG + chr1_3:24371815-24371834 Msa0111000:CDS 40.0%
!!! CCTCCAATCCTGTTTTGAAA+TGG - chr1_3:24371821-24371840 None:intergenic 40.0%
CCATTTCAAAACAGGATTGG+AGG + chr1_3:24371818-24371837 Msa0111000:CDS 40.0%
CAAAACAGGATTGGAGGAAA+AGG + chr1_3:24371824-24371843 Msa0111000:CDS 40.0%
! GACTGCATTGATCTTTAGCA+GGG - chr1_3:24371879-24371898 None:intergenic 40.0%
! TGACTGCATTGATCTTTAGC+AGG - chr1_3:24371880-24371899 None:intergenic 40.0%
AAAGATCAATGCAGTCAGTG+TGG + chr1_3:24371883-24371902 Msa0111000:CDS 40.0%
ACTAAGTAGAGTCGACTACA+TGG - chr1_3:24372058-24372077 None:intergenic 40.0%
! TGTAGTCGACTCTACTTAGT+AGG + chr1_3:24372058-24372077 Msa0111000:intron 40.0%
GTTAGGATTATGCTAGGAGT+AGG + chr1_3:24372108-24372127 Msa0111000:intron 40.0%
!! GGGTTGATTTGGTTACACAA+AGG - chr1_3:24372151-24372170 None:intergenic 40.0%
AAACCTGCTTATAAGGTGTG+AGG - chr1_3:24372264-24372283 None:intergenic 40.0%
GCATCAAGTGCAATAGTACA+GGG + chr1_3:24372364-24372383 Msa0111000:intron 40.0%
AATCGGAGTCTCACTTTGAA+AGG + chr1_3:24372408-24372427 Msa0111000:intron 40.0%
!! AACATCGACTCGTAAGATGA+GGG - chr1_3:24372468-24372487 None:intergenic 40.0%
TCTTACGAGTCGATGTTGTA+AGG + chr1_3:24372471-24372490 Msa0111000:intron 40.0%
CGATGTTGTAAGGATGAGTT+AGG + chr1_3:24372481-24372500 Msa0111000:intron 40.0%
AGCAGTCATTCTGATGTAGA+AGG + chr1_3:24372655-24372674 Msa0111000:intron 40.0%
AGTAAAGCCAGTTCAAATGC+AGG - chr1_3:24372683-24372702 None:intergenic 40.0%
AAACTGGAACCTGTTGTTCA+TGG + chr1_3:24373010-24373029 Msa0111000:CDS 40.0%
AACCTGTTGTTCATGGTAGA+GGG + chr1_3:24373017-24373036 Msa0111000:CDS 40.0%
ACCTTAGATGAGACCTACTT+AGG + chr1_3:24373052-24373071 Msa0111000:CDS 40.0%
CCTTAGATGAGACCTACTTA+GGG + chr1_3:24373053-24373072 Msa0111000:CDS 40.0%
TTCCTCATAGATCCCTAAGT+AGG - chr1_3:24373068-24373087 None:intergenic 40.0%
GTCAGAATATACCTTCGACA+GGG - chr1_3:24373114-24373133 None:intergenic 40.0%
AGTCAGAATATACCTTCGAC+AGG - chr1_3:24373115-24373134 None:intergenic 40.0%
AAAGGTAAGGAATGGCAAAG+AGG - chr1_3:24373272-24373291 None:intergenic 40.0%
GCGTCTTAAAAGGTAAGGAA+TGG - chr1_3:24373280-24373299 None:intergenic 40.0%
CTCTCTATTTACAGGCAAAG+AGG - chr1_3:24373344-24373363 None:intergenic 40.0%
CTCTTTGCCTGTAAATAGAG+AGG + chr1_3:24373342-24373361 Msa0111000:intron 40.0%
GTTTCGGTCTATCAACTTCA+TGG + chr1_3:24373595-24373614 Msa0111000:intron 40.0%
! GGCTTTGATGTCAATGACTA+AGG + chr1_3:24373745-24373764 Msa0111000:intron 40.0%
!! CCCTCATTGAGTTTTTGGAT+AGG + chr1_3:24373862-24373881 Msa0111000:intron 40.0%
GCCTATCCAAAAACTCAATG+AGG - chr1_3:24373866-24373885 None:intergenic 40.0%
TGGATAGGCCAGAAGTTTAA+TGG + chr1_3:24373877-24373896 Msa0111000:intron 40.0%
CGAAATGCTTAAATCAGGCA+TGG + chr1_3:24374097-24374116 Msa0111000:CDS 40.0%
AACCTTGCTAAAACAGGTCT+GGG - chr1_3:24374283-24374302 None:intergenic 40.0%
AAACCTTGCTAAAACAGGTC+TGG - chr1_3:24374284-24374303 None:intergenic 40.0%
GTTGCAAACCTTGCTAAAAC+AGG - chr1_3:24374289-24374308 None:intergenic 40.0%
GATGAAGGTTACAAACCATG+TGG + chr1_3:24374563-24374582 Msa0111000:intron 40.0%
!! ACTTGATAGTGCTCTAGCAT+AGG + chr1_3:24374816-24374835 Msa0111000:intron 40.0%
GCATAGGAGATAAAAGCTAC+GGG + chr1_3:24374832-24374851 Msa0111000:intron 40.0%
TTTGAAGATCCTCCATTGCT+AGG + chr1_3:24374878-24374897 Msa0111000:intron 40.0%
GTCATGTGCTCTCAATTTCT+AGG + chr1_3:24374961-24374980 Msa0111000:intron 40.0%
! TGATAATGCCTAAGAGCATG+CGG + chr1_3:24375108-24375127 Msa0111000:intron 40.0%
AAGATCTGTAACCGAGTTGT+TGG + chr1_3:24375211-24375230 Msa0111000:intron 40.0%
AACCAGTCACAATGGAGAAA+GGG - chr1_3:24376312-24376331 None:intergenic 40.0%
TAACCAGTCACAATGGAGAA+AGG - chr1_3:24376313-24376332 None:intergenic 40.0%
CTATGTTCCTTATTCGACAG+TGG + chr1_3:24376503-24376522 Msa0111000:intron 40.0%
AAGCTATCTCAGGAAGCTAA+TGG - chr1_3:24376770-24376789 None:intergenic 40.0%
TAGCTTCCTGAGATAGCTTA+CGG + chr1_3:24376771-24376790 Msa0111000:intron 40.0%
CAATTTCCGTAAGCTATCTC+AGG - chr1_3:24376780-24376799 None:intergenic 40.0%
TTTATCCAAACATGGCCCTA+GGG + chr1_3:24376910-24376929 Msa0111000:intron 40.0%
TCGTAGTAGTTAGGAACAGT+TGG + chr1_3:24377027-24377046 Msa0111000:intron 40.0%
CGTAGTAGTTAGGAACAGTT+GGG + chr1_3:24377028-24377047 Msa0111000:intron 40.0%
GTAGTAGTTAGGAACAGTTG+GGG + chr1_3:24377029-24377048 Msa0111000:intron 40.0%
GTGGAGAAATAAGGGTAGAA+AGG + chr1_3:24377084-24377103 Msa0111000:intron 40.0%
! ACTACCACAATGTATTGGTC+AGG + chr1_3:24377208-24377227 Msa0111000:intron 40.0%
ATTGCCTGACCAATACATTG+TGG - chr1_3:24377215-24377234 None:intergenic 40.0%
TAGAAAAGTCTGAGGACAGT+TGG - chr1_3:24377307-24377326 None:intergenic 40.0%
GGAGGTTATAGAAAAGTCTG+AGG - chr1_3:24377315-24377334 None:intergenic 40.0%
!!! AGATTTTTGGGTTTCCTCCA+TGG + chr1_3:24377392-24377411 Msa0111000:intron 40.0%
! GTGTTATTGATTGCGAATGG+TGG - chr1_3:24377419-24377438 None:intergenic 40.0%
TTCTGTTTAAACTTCCTGGC+AGG + chr1_3:24377483-24377502 Msa0111000:intron 40.0%
! GTTCACTTGAAGCATTTGGA+CGG + chr1_3:24377505-24377524 Msa0111000:CDS 40.0%
TTTGGACGGTCATATTGAAG+AGG + chr1_3:24377519-24377538 Msa0111000:CDS 40.0%
TTTGCTGGGAGACAGAAATA+AGG - chr1_3:24377629-24377648 None:intergenic 40.0%
TTATTGCTCCATCTTGCTAC+AGG + chr1_3:24377663-24377682 Msa0111000:CDS 40.0%
! TGAGTTTAGAGTCACGAGTT+TGG + chr1_3:24377702-24377721 Msa0111000:intron 40.0%
!! GGTGTGATATTTTCAGGACT+TGG + chr1_3:24377996-24378015 Msa0111000:intron 40.0%
!! TATTTTCAGGACTTGGTCGT+TGG + chr1_3:24378003-24378022 Msa0111000:intron 40.0%
! GACTTGGTCGTTGGATATAT+GGG + chr1_3:24378012-24378031 Msa0111000:CDS 40.0%
!! ATGTTGTGTCATGCTGATTC+CGG - chr1_3:24378052-24378071 None:intergenic 40.0%
GTTAACTTCACATTCTCCCA+TGG - chr1_3:24378675-24378694 None:intergenic 40.0%
!!! TTTCCAACAAATTTTGGGGC+AGG - chr1_3:24378810-24378829 None:intergenic 40.0%
!! TGGCTCTGTTTTCTATGTTC+AGG + chr1_3:24378944-24378963 Msa0111000:intron 40.0%
!! TATGTTCAGGTTGGTCCAAA+GGG + chr1_3:24378957-24378976 Msa0111000:intron 40.0%
CTGTTGCAACAAAGTGAAGA+TGG - chr1_3:24379088-24379107 None:intergenic 40.0%
TAAATTGTTGCAGGGCTGAT+AGG + chr1_3:24379134-24379153 Msa0111000:intron 40.0%
AGCACGAATGGAGAGAGAAA+GGG - chr1_3:24371533-24371552 None:intergenic 45.0%
AAGCACGAATGGAGAGAGAA+AGG - chr1_3:24371534-24371553 None:intergenic 45.0%
CGTGCTTCTTCTTCATCACA+AGG + chr1_3:24371547-24371566 Msa0111000:CDS 45.0%
!! CATGGTATGAAGCACCGTTA+CGG + chr1_3:24371603-24371622 Msa0111000:intron 45.0%
! GCATTGATCTTTAGCAGGGT+AGG - chr1_3:24371875-24371894 None:intergenic 45.0%
CGACTCTACTTAGTAGGACA+TGG + chr1_3:24372064-24372083 Msa0111000:intron 45.0%
CTCTACTTAGTAGGACATGG+TGG + chr1_3:24372067-24372086 Msa0111000:intron 45.0%
ACTCCTCACACCTTATAAGC+AGG + chr1_3:24372258-24372277 Msa0111000:intron 45.0%
CGCATCAAGTGCAATAGTAC+AGG + chr1_3:24372363-24372382 Msa0111000:intron 45.0%
!! ACATCGACTCGTAAGATGAG+GGG - chr1_3:24372467-24372486 None:intergenic 45.0%
!! CAACATCGACTCGTAAGATG+AGG - chr1_3:24372469-24372488 None:intergenic 45.0%
GAAGGATCCTGCATTTGAAC+TGG + chr1_3:24372673-24372692 Msa0111000:intron 45.0%
GAACCTGTTGTTCATGGTAG+AGG + chr1_3:24373016-24373035 Msa0111000:CDS 45.0%
CCCTAAGTAGGTCTCATCTA+AGG - chr1_3:24373056-24373075 None:intergenic 45.0%
GACCTACTTAGGGATCTATG+AGG + chr1_3:24373063-24373082 Msa0111000:CDS 45.0%
ATGAGGAACTGCTGTATGCT+CGG + chr1_3:24373080-24373099 Msa0111000:CDS 45.0%
GCAGAGCTTTCAATGCCAAA+AGG - chr1_3:24373398-24373417 None:intergenic 45.0%
GGAGGTCATCGAAGTATGAT+AGG - chr1_3:24373478-24373497 None:intergenic 45.0%
TCCAAAAACTCAATGAGGGC+CGG - chr1_3:24373861-24373880 None:intergenic 45.0%
TTAGCAGCCATCACTTCTTC+TGG - chr1_3:24374404-24374423 None:intergenic 45.0%
GAAGAAGTGATGGCTGCTAA+AGG + chr1_3:24374404-24374423 Msa0111000:CDS 45.0%
!! AGCGCAAGGGTATTAAGGTT+AGG - chr1_3:24374449-24374468 None:intergenic 45.0%
!! CAACAAGCGCAAGGGTATTA+AGG - chr1_3:24374454-24374473 None:intergenic 45.0%
! TAATACCCTTGCGCTTGTTG+AGG + chr1_3:24374454-24374473 Msa0111000:CDS 45.0%
ACAAACCTCAACAAGCGCAA+GGG - chr1_3:24374462-24374481 None:intergenic 45.0%
CCTTAGACAGAACTTCCACA+TGG - chr1_3:24374581-24374600 None:intergenic 45.0%
CCATGTGGAAGTTCTGTCTA+AGG + chr1_3:24374578-24374597 Msa0111000:intron 45.0%
TGTTAGGATCCTAGCAATGG+AGG - chr1_3:24374890-24374909 None:intergenic 45.0%
TTTCATCATTGACAGGCTGC+AGG + chr1_3:24376201-24376220 Msa0111000:intron 45.0%
! GTCAAGCGTCTTCTTTTCTG+TGG + chr1_3:24376225-24376244 Msa0111000:CDS 45.0%
! CGTCTTCTTTTCTGTGGTGT+AGG + chr1_3:24376231-24376250 Msa0111000:CDS 45.0%
TTCCCTTTCTCCATTGTGAC+TGG + chr1_3:24376307-24376326 Msa0111000:intron 45.0%
! TGTGGAGCACCACTTGAATT+TGG + chr1_3:24376376-24376395 Msa0111000:CDS 45.0%
AGGCACAAATTGTGGTATGC+AGG + chr1_3:24376415-24376434 Msa0111000:intron 45.0%
CCATTGTCCACTGTCGAATA+AGG - chr1_3:24376513-24376532 None:intergenic 45.0%
CCTTATTCGACAGTGGACAA+TGG + chr1_3:24376510-24376529 Msa0111000:intron 45.0%
AAACTTATCCAGTCCTTCCC+TGG - chr1_3:24376538-24376557 None:intergenic 45.0%
GTTTATCCAAACATGGCCCT+AGG + chr1_3:24376909-24376928 Msa0111000:intron 45.0%
!! GTAGACAGCTTGGTGTAACA+TGG + chr1_3:24376934-24376953 Msa0111000:intron 45.0%
AAAGGGAGCTCGTAGTAGTT+AGG + chr1_3:24377018-24377037 Msa0111000:intron 45.0%
CAACCTTCACAAATAGGCCA+TGG - chr1_3:24377336-24377355 None:intergenic 45.0%
CATGGCCTATTTGTGAAGGT+TGG + chr1_3:24377334-24377353 Msa0111000:intron 45.0%
TAAGCCATCATGTAACGCCA+TGG - chr1_3:24377365-24377384 None:intergenic 45.0%
! GCAGGTTCACTTGAAGCATT+TGG + chr1_3:24377501-24377520 Msa0111000:intron 45.0%
CTGTCTCCCAGCAAATGATT+TGG + chr1_3:24377634-24377653 Msa0111000:CDS 45.0%
! GGACTTGGTCGTTGGATATA+TGG + chr1_3:24378011-24378030 Msa0111000:intron 45.0%
ATGGGCGTGCCAAAATATTC+CGG + chr1_3:24378030-24378049 Msa0111000:CDS 45.0%
TGAAACGACAGGAATGAACG+TGG + chr1_3:24378226-24378245 Msa0111000:intron 45.0%
GCTGTATTATTCAGGGGGAT+AGG + chr1_3:24378370-24378389 Msa0111000:intron 45.0%
TGGACCAGTGTTGTCAATTG+TGG + chr1_3:24378538-24378557 Msa0111000:intron 45.0%
!! CTATGTTCAGGTTGGTCCAA+AGG + chr1_3:24378956-24378975 Msa0111000:intron 45.0%
CGTGCAAATTCAATGCCCTT+TGG - chr1_3:24378975-24378994 None:intergenic 45.0%
ACCTTTCCTTTCCCCATATC+CGG - chr1_3:24379043-24379062 None:intergenic 45.0%
GGATTACATGCTCCAATCAG+TGG + chr1_3:24379261-24379280 Msa0111000:three_prime_UTR 45.0%
GCACGAATGGAGAGAGAAAG+GGG - chr1_3:24371532-24371551 None:intergenic 50.0%
TAAGTGTCCGGTGTCCGTAA+CGG - chr1_3:24371620-24371639 None:intergenic 50.0%
TAGACGTTGTGTCCGTGTGA+GGG + chr1_3:24371696-24371715 Msa0111000:intron 50.0%
AGGTCAAAACCTATCCCACC+AGG + chr1_3:24371844-24371863 Msa0111000:CDS 50.0%
TCAAAACCTATCCCACCAGG+TGG + chr1_3:24371847-24371866 Msa0111000:CDS 50.0%
GCTTGTGCTTTCTTGGGAGA+TGG + chr1_3:24371943-24371962 Msa0111000:CDS 50.0%
TGGTTACACAAAGGAGGTCG+AGG - chr1_3:24372142-24372161 None:intergenic 50.0%
GTGACTAAGCAACACCGCTT+TGG - chr1_3:24372592-24372611 None:intergenic 50.0%
CTCCCTCTACCATGAACAAC+AGG - chr1_3:24373022-24373041 None:intergenic 50.0%
CGGAAACTTAACCCTGTCGA+AGG + chr1_3:24373100-24373119 Msa0111000:CDS 50.0%
! ACCGGCCCTCATTGAGTTTT+TGG + chr1_3:24373857-24373876 Msa0111000:intron 50.0%
TTCATAGGGGCTCAATGGAC+TGG + chr1_3:24374053-24374072 Msa0111000:intron 50.0%
CTGGGAGCAAATCTGTCATC+AGG - chr1_3:24374265-24374284 None:intergenic 50.0%
!!! CTCCCAGACCTGTTTTAGCA+AGG + chr1_3:24374278-24374297 Msa0111000:CDS 50.0%
CAGGACACCAGAAGAAGTGA+TGG + chr1_3:24374394-24374413 Msa0111000:intron 50.0%
CACAAACCTCAACAAGCGCA+AGG - chr1_3:24374463-24374482 None:intergenic 50.0%
! TTGATGGACCGCATGCTCTT+AGG - chr1_3:24375119-24375138 None:intergenic 50.0%
TGTAAGAGAACCTCTCGACG+AGG + chr1_3:24375295-24375314 Msa0111000:intron 50.0%
TTTCTGTGGTGTAGGTTGCC+AGG + chr1_3:24376239-24376258 Msa0111000:CDS 50.0%
CCTTCACAGTAGTGGTACCT+TGG - chr1_3:24376266-24376285 None:intergenic 50.0%
! CCAAGGTACCACTACTGTGA+AGG + chr1_3:24376263-24376282 Msa0111000:intron 50.0%
GACAGTGGACAATGGAACCA+GGG + chr1_3:24376518-24376537 Msa0111000:intron 50.0%
! CTTGGTGTAACATGGCCCTA+GGG + chr1_3:24376942-24376961 Msa0111000:intron 50.0%
CCTTCACAAATAGGCCATGG+AGG - chr1_3:24377333-24377352 None:intergenic 50.0%
CCTCCATGGCCTATTTGTGA+AGG + chr1_3:24377330-24377349 Msa0111000:intron 50.0%
CGCAGCCAACCTTCACAAAT+AGG - chr1_3:24377342-24377361 None:intergenic 50.0%
!! TGATTGCGAATGGTGGACCA+TGG - chr1_3:24377412-24377431 None:intergenic 50.0%
ATGCTTCAAGTGAACCTGCC+AGG - chr1_3:24377500-24377519 None:intergenic 50.0%
AACTCGGTCGTCCTAAGTTC+AGG - chr1_3:24377881-24377900 None:intergenic 50.0%
GGATAGGCGACCATTTGTCA+TGG + chr1_3:24378386-24378405 Msa0111000:CDS 50.0%
!!! ACAAATTTTGGGGCAGGCTG+AGG - chr1_3:24378804-24378823 None:intergenic 50.0%
CAGCCTGCCCCAAAATTTGT+TGG + chr1_3:24378804-24378823 Msa0111000:CDS 50.0%
CGTAAACCGGATATGGGGAA+AGG + chr1_3:24379034-24379053 Msa0111000:CDS 50.0%
ACCGGATATGGGGAAAGGAA+AGG + chr1_3:24379039-24379058 Msa0111000:CDS 50.0%
CATGCTCCAATCAGTGGCAT+AGG + chr1_3:24379267-24379286 Msa0111000:three_prime_UTR 50.0%
!! TGAAGCACCGTTACGGACAC+CGG + chr1_3:24371610-24371629 Msa0111000:intron 55.0%
GTAGACGTTGTGTCCGTGTG+AGG + chr1_3:24371695-24371714 Msa0111000:intron 55.0%
TAGGTTCCACCTGGTGGGAT+AGG - chr1_3:24371856-24371875 None:intergenic 55.0%
TTAGCAGGGTAGGTTCCACC+TGG - chr1_3:24371865-24371884 None:intergenic 55.0%
CAGTAGTGGTACCTTGGACC+TGG - chr1_3:24376260-24376279 None:intergenic 55.0%
CGACAGTGGACAATGGAACC+AGG + chr1_3:24376517-24376536 Msa0111000:intron 55.0%
GTGGACAATGGAACCAGGGA+AGG + chr1_3:24376522-24376541 Msa0111000:intron 55.0%
CAATGGAACCAGGGAAGGAC+TGG + chr1_3:24376527-24376546 Msa0111000:CDS 55.0%
ACCAAGCTGTCTACGCCCTA+GGG - chr1_3:24376928-24376947 None:intergenic 55.0%
!! GCTTGGTGTAACATGGCCCT+AGG + chr1_3:24376941-24376960 Msa0111000:intron 55.0%
ATCAAGCTGTCCACGCCCTA+GGG - chr1_3:24376960-24376979 None:intergenic 55.0%
GTCTGAGGACAGTTGGCAAG+AGG - chr1_3:24377300-24377319 None:intergenic 55.0%
TGCGCCATGGCGTTACATGA+TGG + chr1_3:24377358-24377377 Msa0111000:intron 55.0%
!! TTGCGAATGGTGGACCATGG+AGG - chr1_3:24377409-24377428 None:intergenic 55.0%
!!! AATTTTGGGGCAGGCTGAGG+AGG - chr1_3:24378801-24378820 None:intergenic 55.0%
GGCACACCTATGCCACTGAT+TGG - chr1_3:24379276-24379295 None:intergenic 55.0%
GGACACCGGACACTTACACG+CGG + chr1_3:24371624-24371643 Msa0111000:intron 60.0%
GGTGTCCGCGTGTAAGTGTC+CGG - chr1_3:24371632-24371651 None:intergenic 60.0%
CAGGGTAGGTTCCACCTGGT+GGG - chr1_3:24371861-24371880 None:intergenic 60.0%
GGTGTAGGTTGCCAGGTCCA+AGG + chr1_3:24376246-24376265 Msa0111000:CDS 60.0%
CTACGCCCTAGGGCCATGTT+TGG - chr1_3:24376918-24376937 None:intergenic 60.0%
CACCAAGCTGTCTACGCCCT+AGG - chr1_3:24376929-24376948 None:intergenic 60.0%
TGTAACATGGCCCTAGGGCG+TGG + chr1_3:24376947-24376966 Msa0111000:intron 60.0%
CATCAAGCTGTCCACGCCCT+AGG - chr1_3:24376961-24376980 None:intergenic 60.0%
! TGTGAAGGTTGGCTGCGCCA+TGG + chr1_3:24377345-24377364 Msa0111000:intron 60.0%
GCAGGGTAGGTTCCACCTGG+TGG - chr1_3:24371862-24371881 None:intergenic 65.0%
GCCCTAGGGCGTAGACAGCT+TGG + chr1_3:24376924-24376943 Msa0111000:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 24371410 24379530 24371410 ID=Msa0111000;Name=Msa0111000
chr1_3 mRNA 24371410 24379530 24371410 ID=Msa0111000-mRNA-1;Parent=Msa0111000;Name=Msa0111000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=98|0.94|0.94|1|1|1|18|293|449
chr1_3 exon 24371410 24371568 24371410 ID=Msa0111000-mRNA-1:exon:8416;Parent=Msa0111000-mRNA-1
chr1_3 exon 24371809 24371981 24371809 ID=Msa0111000-mRNA-1:exon:8417;Parent=Msa0111000-mRNA-1
chr1_3 exon 24373010 24373121 24373010 ID=Msa0111000-mRNA-1:exon:8418;Parent=Msa0111000-mRNA-1
chr1_3 exon 24374060 24374144 24374060 ID=Msa0111000-mRNA-1:exon:8419;Parent=Msa0111000-mRNA-1
chr1_3 exon 24374258 24374299 24374258 ID=Msa0111000-mRNA-1:exon:8420;Parent=Msa0111000-mRNA-1
chr1_3 exon 24374397 24374475 24374397 ID=Msa0111000-mRNA-1:exon:8421;Parent=Msa0111000-mRNA-1
chr1_3 exon 24376216 24376267 24376216 ID=Msa0111000-mRNA-1:exon:8422;Parent=Msa0111000-mRNA-1
chr1_3 exon 24376366 24376428 24376366 ID=Msa0111000-mRNA-1:exon:8423;Parent=Msa0111000-mRNA-1
chr1_3 exon 24376523 24376620 24376523 ID=Msa0111000-mRNA-1:exon:8424;Parent=Msa0111000-mRNA-1
chr1_3 exon 24377505 24377540 24377505 ID=Msa0111000-mRNA-1:exon:8425;Parent=Msa0111000-mRNA-1
chr1_3 exon 24377623 24377684 24377623 ID=Msa0111000-mRNA-1:exon:8426;Parent=Msa0111000-mRNA-1
chr1_3 exon 24377801 24377828 24377801 ID=Msa0111000-mRNA-1:exon:8427;Parent=Msa0111000-mRNA-1
chr1_3 exon 24378012 24378091 24378012 ID=Msa0111000-mRNA-1:exon:8428;Parent=Msa0111000-mRNA-1
chr1_3 exon 24378237 24378306 24378237 ID=Msa0111000-mRNA-1:exon:8429;Parent=Msa0111000-mRNA-1
chr1_3 exon 24378384 24378441 24378384 ID=Msa0111000-mRNA-1:exon:8430;Parent=Msa0111000-mRNA-1
chr1_3 exon 24378790 24378854 24378790 ID=Msa0111000-mRNA-1:exon:8431;Parent=Msa0111000-mRNA-1
chr1_3 exon 24378966 24379060 24378966 ID=Msa0111000-mRNA-1:exon:8432;Parent=Msa0111000-mRNA-1
chr1_3 exon 24379147 24379530 24379147 ID=Msa0111000-mRNA-1:exon:8433;Parent=Msa0111000-mRNA-1
chr1_3 five_prime_UTR 24371410 24371507 24371410 ID=Msa0111000-mRNA-1:five_prime_utr;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24371508 24371568 24371508 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24371809 24371981 24371809 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24373010 24373121 24373010 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24374060 24374144 24374060 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24374258 24374299 24374258 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24374397 24374475 24374397 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24376216 24376267 24376216 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24376366 24376428 24376366 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24376523 24376620 24376523 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24377505 24377540 24377505 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24377623 24377684 24377623 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24377801 24377828 24377801 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24378012 24378091 24378012 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24378237 24378306 24378237 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24378384 24378441 24378384 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24378790 24378854 24378790 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24378966 24379060 24378966 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 CDS 24379147 24379237 24379147 ID=Msa0111000-mRNA-1:cds;Parent=Msa0111000-mRNA-1
chr1_3 three_prime_UTR 24379238 24379530 24379238 ID=Msa0111000-mRNA-1:three_prime_utr;Parent=Msa0111000-mRNA-1
Gene Sequence

>Msa0111000

ATGTCTTCTCTCTCTTCGCTACCCCTTTCTCTCTCCATTCGTGCTTCTTCTTCATCACAAGCAGAATCCTCCATTTCAAAACAGGATTGGAGGAAAAGGTCAAAACCTATCCCACCAGGTGGAACCTACCCTGCTAAAGATCAATGCAGTCAGTGTGGATTGTGTGATACATATTATATTGCTCATGTTAAGAATGCTTGTGCTTTCTTGGGAGATGGAATGTCTAAGATTGAAAAACTGGAACCTGTTGTTCATGGTAGAGGGAGAAAAACTGATACCTTAGATGAGACCTACTTAGGGATCTATGAGGAACTGCTGTATGCTCGGAAACTTAACCCTGTCGAAGGGGCTCAATGGACTGGTATAGTAACAACCATTGCAATCGAAATGCTTAAATCAGGCATGGTTGAAGCTGTCATTTGTGTACAAAGTGATCCTGATGACAGATTTGCTCCCAGACCTGTTTTAGCAAGGACACCAGAAGAAGTGATGGCTGCTAAAGGCGTCAAGCCAACATTATCTCCTAACCTTAATACCCTTGCGCTTGTTGAGGCTGCAGGTGTCAAGCGTCTTCTTTTCTGTGGTGTAGGTTGCCAGGTCCAAGCATTAAGATCTGTGGAGCACCACTTGAATTTGGATAAGCTCTATGTTTTAGGCACAAATTGTGTGGACAATGGAACCAGGGAAGGACTGGATAAGTTTCTAAATGCTGCGAGTGATTCCCCTGAAACAGTTCTCCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGACGGTCATATTGAAGAGGTTCCTTATTTCTGTCTCCCAGCAAATGATTTGGTTGAAGTTATTGCTCCATCTTGCTACAGCTGTTTTGACTATACAAATGGTTTAGCAGACTTGGTCGTTGGATATATGGGCGTGCCAAAATATTCCGGAATCAGCATGACACAACATCCACAATATATTACTGTCAGGAATGAACGTGGAAGAGAGATGATGAGTCTTGTAAAGAACTTACTAGAGATTACTCCAACAGTTAATTCAGGGGATAGGCGACCATTTGTCATGGAGACTGTTAAGGCTGATGATAAAGCTAAATTTGGAAGAGGTCCTCCTCAGCCTGCCCCAAAATTTGTTGGAAACCTGATTGCATTTTTACTAAATTTGGTTGGTCCAAAGGGCATTGAATTTGCACGATACTCGCTTGATTATCATACCATTCGGAACTATTTATACGTAAACCGGATATGGGGAAAGGAAAGGGCTGATAGGCACATGCCTTCATATGCTAAGAAAATTGTGGAAATGTACAACAAAAATGGTGAAATTGAAAAGATGCTCTCAGAGAAGTGA

Protein sequence

>Msa0111000

MSSLSSLPLSLSIRASSSSQAESSISKQDWRKRSKPIPPGGTYPAKDQCSQCGLCDTYYIAHVKNACAFLGDGMSKIEKLEPVVHGRGRKTDTLDETYLGIYEELLYARKLNPVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPDDRFAPRPVLARTPEEVMAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLNAASDSPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVEVIAPSCYSCFDYTNGLADLVVGYMGVPKYSGISMTQHPQYITVRNERGREMMSLVKNLLEITPTVNSGDRRPFVMETVKADDKAKFGRGPPQPAPKFVGNLIAFLLNLVGPKGIEFARYSLDYHTIRNYLYVNRIWGKERADRHMPSYAKKIVEMYNKNGEIEKMLSEK*