AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0873950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873950 MtrunA17_Chr1g0191041 86.063 287 9 2 1 257 15 300 3.59e-164 466
Msa0873950 MtrunA17_Chr1g0191041 57.921 202 51 3 274 455 137 324 1.26e-51 177
Msa0873950 MtrunA17_Chr5g0394491 75.261 287 40 4 1 257 15 300 1.33e-131 383
Msa0873950 MtrunA17_Chr5g0394491 58.416 202 50 3 274 455 137 324 4.54e-51 176
Msa0873950 MtrunA17_Chr1g0205381 73.868 287 44 3 1 257 15 300 1.13e-129 378
Msa0873950 MtrunA17_Chr1g0205381 67.066 167 35 1 309 455 158 324 8.02e-53 180
Msa0873950 MtrunA17_Chr4g0045721 64.111 287 72 2 1 257 54 339 1.36e-122 361
Msa0873950 MtrunA17_Chr4g0045721 50.251 199 65 3 274 452 176 360 1.32e-56 191
Msa0873950 MtrunA17_Chr1g0191051 64.808 287 70 3 1 257 14 299 7.62e-117 345
Msa0873950 MtrunA17_Chr1g0191051 65.842 202 35 3 274 455 136 323 3.99e-74 236
Msa0873950 MtrunA17_Chr1g0191051 46.721 122 37 3 262 360 1 117 1.05e-18 87.0
Msa0873950 MtrunA17_Chr4g0045781 63.668 289 70 3 1 257 73 358 2.02e-112 336
Msa0873950 MtrunA17_Chr4g0045781 60.976 164 44 1 309 452 216 379 1.11e-43 157
Msa0873950 MtrunA17_Chr4g0045771 57.525 299 88 3 2 270 54 343 1.00e-111 333
Msa0873950 MtrunA17_Chr4g0045771 47.087 206 66 5 267 452 169 351 1.19e-50 175
Msa0873950 MtrunA17_Chr7g0254401 58.845 277 93 2 1 257 72 347 6.08e-104 314
Msa0873950 MtrunA17_Chr7g0254401 51.220 164 50 2 309 452 215 368 8.57e-33 127
Msa0873950 MtrunA17_Chr1g0191061 53.116 337 79 4 1 260 28 362 1.13e-103 314
Msa0873950 MtrunA17_Chr1g0191061 65.534 206 39 4 282 455 178 383 4.17e-64 211
Msa0873950 MtrunA17_Chr7g0248021 53.191 282 101 3 1 252 68 348 4.78e-95 291
Msa0873950 MtrunA17_Chr7g0248021 48.128 187 71 3 292 452 188 374 2.06e-44 159
Msa0873950 MtrunA17_Chr1g0191071 56.400 250 73 3 43 258 1 248 1.61e-78 245
Msa0873950 MtrunA17_Chr1g0191071 65.842 202 30 4 274 455 82 264 1.23e-62 204
Msa0873950 MtrunA17_Chr5g0446431 25.610 328 155 5 2 242 52 377 5.47e-24 103
Msa0873950 MtrunA17_Chr5g0446431 51.667 60 29 0 309 368 233 292 1.73e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873950 AT4G14880.5 68.166 289 57 3 1 257 12 297 1.37e-124 365
Msa0873950 AT4G14880.5 60.870 184 45 3 295 456 144 322 5.49e-53 181
Msa0873950 AT4G14880.3 68.166 289 57 3 1 257 12 297 1.37e-124 365
Msa0873950 AT4G14880.3 60.870 184 45 3 295 456 144 322 5.49e-53 181
Msa0873950 AT4G14880.4 68.166 289 57 3 1 257 12 297 1.37e-124 365
Msa0873950 AT4G14880.4 60.870 184 45 3 295 456 144 322 5.49e-53 181
Msa0873950 AT4G14880.2 68.166 289 57 3 1 257 12 297 1.37e-124 365
Msa0873950 AT4G14880.2 60.870 184 45 3 295 456 144 322 5.49e-53 181
Msa0873950 AT4G14880.1 68.166 289 57 3 1 257 12 297 1.37e-124 365
Msa0873950 AT4G14880.1 60.870 184 45 3 295 456 144 322 5.49e-53 181
Msa0873950 AT2G43750.1 66.782 289 61 3 1 257 82 367 5.98e-120 356
Msa0873950 AT2G43750.1 65.244 164 37 1 309 452 225 388 4.97e-49 172
Msa0873950 AT2G43750.2 66.782 289 61 3 1 257 82 367 5.98e-120 356
Msa0873950 AT2G43750.2 65.244 164 37 1 309 452 225 388 4.97e-49 172
Msa0873950 AT3G59760.2 64.966 294 68 3 1 262 120 410 3.56e-119 355
Msa0873950 AT3G59760.2 48.958 192 63 4 274 445 242 418 9.10e-32 126
Msa0873950 AT3G59760.1 66.090 289 63 3 1 257 120 405 8.21e-119 355
Msa0873950 AT3G59760.1 55.276 199 55 3 274 452 242 426 3.07e-48 171
Msa0873950 AT3G59760.3 66.090 289 63 3 1 257 120 405 1.23e-118 354
Msa0873950 AT3G59760.3 55.276 199 55 3 274 452 242 426 3.27e-48 171
Msa0873950 AT3G04940.1 63.066 287 75 3 1 257 15 300 3.96e-111 331
Msa0873950 AT3G04940.1 64.024 164 39 1 309 452 158 321 5.97e-55 186
Msa0873950 AT3G04940.2 63.066 287 75 3 1 257 15 300 3.96e-111 331
Msa0873950 AT3G04940.2 64.024 164 39 1 309 452 158 321 5.97e-55 186
Msa0873950 AT5G28020.2 62.630 289 73 3 1 257 14 299 2.76e-109 326
Msa0873950 AT5G28020.2 61.818 165 43 1 311 455 159 323 1.59e-46 164
Msa0873950 AT5G28020.4 62.630 289 73 3 1 257 14 299 2.76e-109 326
Msa0873950 AT5G28020.4 61.818 165 43 1 311 455 159 323 1.59e-46 164
Msa0873950 AT5G28020.1 62.630 289 73 3 1 257 14 299 2.76e-109 326
Msa0873950 AT5G28020.1 61.818 165 43 1 311 455 159 323 1.59e-46 164
Msa0873950 AT5G28020.3 62.630 289 73 3 1 257 14 299 2.76e-109 326
Msa0873950 AT5G28020.3 61.818 165 43 1 311 455 159 323 1.59e-46 164
Msa0873950 AT5G28020.6 62.630 289 73 3 1 257 14 299 2.76e-109 326
Msa0873950 AT5G28020.6 61.818 165 43 1 311 455 159 323 1.59e-46 164
Msa0873950 AT3G22460.2 84.000 175 27 1 1 175 15 188 1.38e-101 301
Msa0873950 AT5G28030.1 59.170 289 83 3 1 257 14 299 3.31e-101 306
Msa0873950 AT5G28030.1 60.606 165 45 1 311 455 159 323 6.30e-46 162
Msa0873950 AT5G28030.4 59.170 289 83 3 1 257 14 299 3.31e-101 306
Msa0873950 AT5G28030.4 60.606 165 45 1 311 455 159 323 6.30e-46 162
Msa0873950 AT5G28030.5 59.170 289 83 3 1 257 14 299 3.31e-101 306
Msa0873950 AT5G28030.5 60.606 165 45 1 311 455 159 323 6.30e-46 162
Msa0873950 AT5G28030.2 59.170 289 83 3 1 257 14 299 3.31e-101 306
Msa0873950 AT5G28030.2 60.606 165 45 1 311 455 159 323 6.30e-46 162
Msa0873950 AT3G03630.1 58.484 277 94 2 1 257 106 381 1.03e-100 307
Msa0873950 AT3G03630.1 51.205 166 51 2 309 454 249 404 3.28e-33 130
Msa0873950 AT3G22460.1 71.806 227 50 2 43 257 1 225 1.16e-100 301
Msa0873950 AT3G22460.1 51.042 192 48 3 284 455 84 249 3.38e-49 169
Msa0873950 AT3G61440.1 53.191 282 101 3 1 252 56 336 8.79e-91 280
Msa0873950 AT3G61440.1 52.381 168 58 2 307 452 195 362 1.14e-43 157
Msa0873950 AT5G28030.3 56.723 238 72 3 1 208 14 250 4.81e-80 249
Msa0873950 AT5G28030.3 68.889 90 28 0 311 400 159 248 4.85e-29 115
Msa0873950 AT3G61440.4 50.775 258 96 3 1 228 56 312 2.51e-78 247
Msa0873950 AT3G61440.4 50.877 114 52 2 307 418 195 306 2.07e-24 103
Msa0873950 AT3G61440.2 52.917 240 83 2 43 252 1 240 4.82e-75 236
Msa0873950 AT3G61440.2 52.381 168 58 2 307 452 99 266 1.37e-44 157
Msa0873950 AT5G28020.5 55.708 219 63 2 75 261 1 217 1.27e-65 211
Msa0873950 AT5G28020.5 61.818 165 43 1 311 455 73 237 4.72e-47 162
Msa0873950 AT3G61440.3 51.402 214 74 2 69 252 2 215 2.65e-63 205
Msa0873950 AT3G61440.3 52.071 169 59 2 306 452 73 241 7.27e-45 157
Msa0873950 AT1G55880.1 25.532 329 155 5 2 242 48 374 1.15e-22 100
Msa0873950 AT1G55880.1 38.202 89 49 1 280 368 207 289 1.25e-13 73.2
Msa0873950 AT1G55880.2 29.464 224 115 4 2 184 48 269 1.19e-21 96.3
Msa0873950 AT1G55880.2 38.202 89 49 1 280 368 207 289 1.03e-13 72.8

Find 125 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCATTGTGAAGTTAAT+AGG 0.176383 6_1:+9587075 Msa0873950:intron
AAAGTTGATGCCCTTGTTTC+TGG 0.184437 6_1:+9583919 Msa0873950:CDS
TTTCTAGCTTTGCAGCAATT+TGG 0.202517 6_1:-9581522 None:intergenic
TTACTCTTGCGGAGAAAATT+TGG 0.221125 6_1:-9589843 None:intergenic
TGCCGCAGCCGCTGCAATTA+AGG 0.271826 6_1:+9585122 Msa0873950:CDS
TGGCTTCATTCCTGGTGTTC+TGG 0.280161 6_1:+9584538 Msa0873950:CDS
ACTAACACCTTTGGGTTTGC+AGG 0.288673 6_1:-9583771 None:intergenic
AATCAGTAATATACCTTTGC+AGG 0.289736 6_1:-9587361 None:intergenic
TTGGTTGCAGGGATAGGAAC+TGG 0.301174 6_1:+9588058 Msa0873950:CDS
AGACCACTGGCCCTGAGATT+TGG 0.302016 6_1:+9588008 Msa0873950:CDS
TTCTAGCTTTGCAGCAATTT+GGG 0.302447 6_1:-9581521 None:intergenic
ATTGGTGCTGGCTTCATTCC+TGG 0.308145 6_1:+9584530 Msa0873950:CDS
TCTCCTAGATGAAGTTATTC+AGG 0.311315 6_1:+9588520 Msa0873950:CDS
AGAATTGATGCTTTGGTTGC+AGG 0.319930 6_1:+9588046 Msa0873950:CDS
TGCATTAAAAGAAGGTTTGC+TGG 0.326558 6_1:+9584996 Msa0873950:CDS
GAATGAACCATTACGTTTAA+CGG 0.330116 6_1:+9589767 Msa0873950:three_prime_UTR
AACGTTTGGACTTTGGAGTT+TGG 0.331648 6_1:+9589705 Msa0873950:three_prime_UTR
TGGTATTGGTTTGGCATTCA+TGG 0.343061 6_1:+9583554 Msa0873950:CDS
GATGCCCTTGTTTCTGGTAT+AGG 0.346426 6_1:+9583925 Msa0873950:CDS
CCATTACGTTTAACGGTGAT+TGG 0.348990 6_1:+9589774 Msa0873950:three_prime_UTR
ACTTTGTGAATGACAACGTT+TGG 0.355206 6_1:+9589691 Msa0873950:three_prime_UTR
AGAACTATTCTCCGTGCTTT+CGG 0.359324 6_1:+9583636 Msa0873950:CDS
AGAAGGAAAACTAACTTCTT+GGG 0.376619 6_1:-9583259 None:intergenic
CCAGTGTCTCTCCAAATCTC+AGG 0.381632 6_1:-9588019 None:intergenic
GGCATTCATGGCAGCTGCTA+AGG 0.385377 6_1:+9583566 Msa0873950:CDS
AATTCATTGTGAAGTTAATA+GGG 0.388493 6_1:+9587076 Msa0873950:intron
AACCTTAATTGCAGCGGCTG+CGG 0.402776 6_1:-9585124 None:intergenic
ATTGAAGATGCCGAAAATAA+AGG 0.410624 6_1:+9587328 Msa0873950:CDS
GCTCCTTTCATGCCTTTAGC+TGG 0.412522 6_1:-9583681 None:intergenic
CTTGTTTCTGGTATAGGAAC+CGG 0.413375 6_1:+9583931 Msa0873950:CDS
TAGGTTCACTGTGAAACTAC+TGG 0.414969 6_1:+9583868 Msa0873950:intron
AAACTTCTTGCATTAAAAGA+AGG 0.415012 6_1:+9584988 Msa0873950:CDS
TTGCAGATGGGAATTTCATC+AGG 0.417954 6_1:+9589274 Msa0873950:intron
TTCTTCAGCTTCACGCCTGA+TGG 0.420313 6_1:-9589570 None:intergenic
TGGAGGGAGAATTGATGCTT+TGG 0.420775 6_1:+9588039 Msa0873950:CDS
GGAACCGGAGGTACAGTAAC+AGG 0.421160 6_1:+9583946 Msa0873950:CDS
AAACTACTGGACCAGAGATC+TGG 0.436235 6_1:+9583881 Msa0873950:CDS
TGCTGAAGAATGTAAGCATT+GGG 0.439335 6_1:-9583738 None:intergenic
ACTAGTGGAAACACTGGTAT+TGG 0.441486 6_1:+9583540 Msa0873950:CDS
TGCTGCAAAGCTAGAAATGA+TGG 0.443156 6_1:+9581528 Msa0873950:CDS
TGGAAACACTGGTATTGGTT+TGG 0.446534 6_1:+9583545 Msa0873950:CDS
CCTCATAAGATCCAAGGAAT+TGG 0.451628 6_1:+9584512 Msa0873950:intron
TTGGTCACTAAGAACTTGTT+AGG 0.457284 6_1:+9589793 Msa0873950:three_prime_UTR
GAATTGATGCTTTGGTTGCA+GGG 0.460383 6_1:+9588047 Msa0873950:CDS
TGAAGCCAGCACCAATTCCT+TGG 0.469310 6_1:-9584523 None:intergenic
TTCAAAATTGCACTTTCAGT+TGG 0.477799 6_1:-9588268 None:intergenic
TTGCAGGTGGGGATATCATC+TGG 0.479973 6_1:+9585096 Msa0873950:intron
GCAAAGAAGCCGGAAAATGC+TGG 0.483242 6_1:+9585147 Msa0873950:CDS
CGACACCATTACCGATACCT+TGG 0.483706 6_1:-9588475 None:intergenic
TGGTTGCAGGGATAGGAACT+GGG 0.484341 6_1:+9588059 Msa0873950:CDS
GCAACACTTTGCAATTAAGA+AGG 0.485120 6_1:+9586902 Msa0873950:CDS
GAATGACAACGTTTGGACTT+TGG 0.485395 6_1:+9589698 Msa0873950:three_prime_UTR
CGATACCTTGGATTAGATGT+TGG 0.489232 6_1:-9588463 None:intergenic
CATCTAGGAGATCAAGATCC+AGG 0.490366 6_1:-9588508 None:intergenic
CTACCTGAATAACTTCATCT+AGG 0.491918 6_1:-9588523 None:intergenic
CTCTCAAGACTCATTGAAGC+AGG 0.492620 6_1:-9583612 None:intergenic
GGAGAGAAACTTAGATATGA+AGG 0.493613 6_1:+9588114 Msa0873950:CDS
AGCACCTGTTACTGTACCTC+CGG 0.496232 6_1:-9583950 None:intergenic
CTAATCCAAGGTATCGGTAA+TGG 0.499930 6_1:+9588470 Msa0873950:CDS
CCAGAGATCTGGAAAAGCTC+TGG 0.501405 6_1:+9583892 Msa0873950:CDS
GATGCTTTGGTTGCAGGGAT+AGG 0.501960 6_1:+9588052 Msa0873950:CDS
GCAGCAGCTGCAATAAAACT+AGG 0.508019 6_1:+9589304 Msa0873950:CDS
ATTGCAGATGCTGAGGAGAA+AGG 0.508023 6_1:+9583225 Msa0873950:CDS
AGTTTCAATAGCTTCTTCGC+TGG 0.508262 6_1:-9584962 None:intergenic
TTGCTGAAGAATGTAAGCAT+TGG 0.512878 6_1:-9583739 None:intergenic
AGTAACAGGTGCTGGAAACC+TGG 0.514080 6_1:+9583960 Msa0873950:CDS
AAGTAACGCTCTCCAAAACT+AGG 0.515786 6_1:-9589527 None:intergenic
CCTTTCTTCATCAGATAACA+TGG 0.518210 6_1:+9586878 Msa0873950:CDS
CCAATCACCGTTAAACGTAA+TGG 0.527938 6_1:-9589774 None:intergenic
GGAGGTACAGTAACAGGTGC+TGG 0.531723 6_1:+9583952 Msa0873950:CDS
TAGACTCATTATGAGACCAC+TGG 0.531764 6_1:+9587995 Msa0873950:intron
GTTCTCACAGATCCAGCTAA+AGG 0.537240 6_1:+9583669 Msa0873950:CDS
GAGATCTGGAAAAGCTCTGG+TGG 0.541486 6_1:+9583895 Msa0873950:CDS
CGGTTCCTATACCAGAAACA+AGG 0.542856 6_1:-9583930 None:intergenic
GCATTCATGGCAGCTGCTAA+GGG 0.547831 6_1:+9583567 Msa0873950:CDS
AGGAGATCAAGATCCAGGAC+AGG 0.551186 6_1:-9588503 None:intergenic
ATACCAGTGTTTCCACTAGT+AGG 0.551210 6_1:-9583537 None:intergenic
AAGATCCAAGGAATTGGTGC+TGG 0.553335 6_1:+9584518 Msa0873950:intron
CTTTGCAACCTTAATTGCAG+CGG 0.555528 6_1:-9585130 None:intergenic
TCTCCAAATCTCAGGGCCAG+TGG 0.561794 6_1:-9588011 None:intergenic
TATCTTAACAACATTACAGA+AGG 0.565102 6_1:+9587114 Msa0873950:CDS
TATCTAAGTTTCTCTCCTTG+AGG 0.566238 6_1:-9588108 None:intergenic
ATTCAAAATTCATGTCTGCA+TGG 0.568883 6_1:-9589748 None:intergenic
CCATGTTATCTGATGAAGAA+AGG 0.572162 6_1:-9586878 None:intergenic
CTTGCTCTAGTGTCAAAGAC+AGG 0.573863 6_1:+9581554 Msa0873950:CDS
GGGAAGAGACAAGAAAATGC+AGG 0.574537 6_1:+9589325 Msa0873950:CDS
GATCCAGCTAAAGGCATGAA+AGG 0.577143 6_1:+9583678 Msa0873950:CDS
CTAACTCAGCACCGAAAGCA+CGG 0.577262 6_1:-9583647 None:intergenic
GTCCTCATTGAGCCTACTAG+TGG 0.580307 6_1:+9583525 Msa0873950:CDS
CAGCAGCTGCAATAAAACTA+GGG 0.584186 6_1:+9589305 Msa0873950:CDS
GAAGGAAAACTAACTTCTTG+GGG 0.586335 6_1:-9583258 None:intergenic
AAAGGCCAACATCTAATCCA+AGG 0.588362 6_1:+9588458 Msa0873950:intron
AATTAAGGTTGCAAAGAAGC+CGG 0.588483 6_1:+9585137 Msa0873950:CDS
AGTATATCTCAACCATGTTG+TGG 0.590226 6_1:+9581486 Msa0873950:CDS
CAGTGTCTCTCCAAATCTCA+GGG 0.596061 6_1:-9588018 None:intergenic
CCTGAGATTTGGAGAGACAC+TGG 0.596193 6_1:+9588019 Msa0873950:CDS
AAATCGACATCCAGAACACC+AGG 0.597252 6_1:-9584548 None:intergenic
GTTAATAGGGAACACACCAT+TGG 0.598353 6_1:+9587089 Msa0873950:intron
CAAGGCCCTCATAAGATCCA+AGG 0.600003 6_1:+9584506 Msa0873950:intron
AAGACTCATTGAAGCAGGCA+TGG 0.602785 6_1:-9583607 None:intergenic
CAACATCTAATCCAAGGTAT+CGG 0.603205 6_1:+9588464 Msa0873950:CDS
AGGTCTCATTACTCCTGCAA+AGG 0.603893 6_1:+9587348 Msa0873950:CDS
CATGATTATTGCAGATGCTG+AGG 0.604545 6_1:+9583218 Msa0873950:CDS
GGGGAACAATAACAGGTGCT+GGG 0.617812 6_1:+9588080 Msa0873950:CDS
AGTCATTCTCATTCAAGCTG+TGG 0.622200 6_1:+9589636 Msa0873950:three_prime_UTR
AGATCTGGAAAAGCTCTGGT+GGG 0.624158 6_1:+9583896 Msa0873950:CDS
GGAGATCAAGATCCAGGACA+GGG 0.624998 6_1:-9588502 None:intergenic
GAGCCTACTAGTGGAAACAC+TGG 0.626296 6_1:+9583534 Msa0873950:CDS
TGAAAATCCTGCAAACCCAA+AGG 0.632579 6_1:+9583764 Msa0873950:CDS
TATCTCAACCATGTTGTGGA+TGG 0.638770 6_1:+9581490 Msa0873950:CDS
CTGTCTTTGACACTAGAGCA+AGG 0.647667 6_1:-9581553 None:intergenic
AGATTTGGAGAGACACTGGA+GGG 0.656101 6_1:+9588023 Msa0873950:CDS
AAACACAGCCATCCACAACA+TGG 0.659606 6_1:-9581498 None:intergenic
AGATCAAGATCCAGGACAGG+GGG 0.659611 6_1:-9588500 None:intergenic
GAGATTTGGAGAGACACTGG+AGG 0.660104 6_1:+9588022 Msa0873950:CDS
AGGTGCTGGGAAGTTCCTCA+AGG 0.662577 6_1:+9588093 Msa0873950:CDS
ATCTTAACAACATTACAGAA+GGG 0.672585 6_1:+9587115 Msa0873950:CDS
GGTTGCAGGGATAGGAACTG+GGG 0.673121 6_1:+9588060 Msa0873950:CDS
GAGATCAAGATCCAGGACAG+GGG 0.676210 6_1:-9588501 None:intergenic
GTTTCTGGTATAGGAACCGG+AGG 0.680508 6_1:+9583934 Msa0873950:CDS
TTCCACTAGTAGGCTCAATG+AGG 0.683327 6_1:-9583527 None:intergenic
ACATGGTTGAGATATACTAG+TGG 0.684632 6_1:-9581481 None:intergenic
GGTTCCTATACCAGAAACAA+GGG 0.692573 6_1:-9583929 None:intergenic
GTTGCAGGGATAGGAACTGG+GGG 0.729118 6_1:+9588061 Msa0873950:CDS
ATGTTGTTAAGATATACCAA+TGG 0.736447 6_1:-9587105 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTATATGAAAATTATT+TGG + chr6_1:9582816-9582835 Msa0873950:intron 10.0%
!!! TTTTTAACAAAAAAAAATAG+TGG + chr6_1:9582995-9583014 Msa0873950:intron 10.0%
!! AATAGTAATAAATAATAAGA+AGG - chr6_1:9583994-9584013 None:intergenic 10.0%
!! ACTTAAAATTTATTATTGAA+GGG - chr6_1:9584673-9584692 None:intergenic 10.0%
!! TACTTAAAATTTATTATTGA+AGG - chr6_1:9584674-9584693 None:intergenic 10.0%
!!! AATTTTAAGTAAAATAAAGT+AGG + chr6_1:9584683-9584702 Msa0873950:intron 10.0%
!!! ATTTTAAGTAAAATAAAGTA+GGG + chr6_1:9584684-9584703 Msa0873950:intron 10.0%
!!! ATCAACTATTATTTTATTTT+AGG + chr6_1:9585685-9585704 Msa0873950:intron 10.0%
!! AAAAAAATTTAAAAACAATC+AGG - chr6_1:9586138-9586157 None:intergenic 10.0%
!!! TGATTGTTTTTAAATTTTTT+TGG + chr6_1:9586137-9586156 Msa0873950:intron 10.0%
!!! TTTTTGAAAAATATAGATTT+TGG + chr6_1:9586275-9586294 Msa0873950:intron 10.0%
!!! TTTTGAAAAATATAGATTTT+GGG + chr6_1:9586276-9586295 Msa0873950:intron 10.0%
!!! TTTTTTTTTTTTTTTTGGTA+AGG - chr6_1:9586564-9586583 None:intergenic 10.0%
!! ATATCTATCAAAAAAATTCT+CGG - chr6_1:9581602-9581621 None:intergenic 15.0%
!! TAATATTATTTAATTACAGG+TGG + chr6_1:9582519-9582538 Msa0873950:intron 15.0%
!!! TTTTTGAATTATTTAATTGC+TGG + chr6_1:9582747-9582766 Msa0873950:intron 15.0%
!!! TTTTGAATTATTTAATTGCT+GGG + chr6_1:9582748-9582767 Msa0873950:intron 15.0%
!! ATGTGTATTATTTATTAAAG+TGG - chr6_1:9582861-9582880 None:intergenic 15.0%
!!! AAATAATACACTTTGATTTA+TGG + chr6_1:9582889-9582908 Msa0873950:intron 15.0%
!!! AAATTTTAAATCGTTTACTT+AGG + chr6_1:9583414-9583433 Msa0873950:intron 15.0%
!!! TTTTAAGTAAAATAAAGTAG+GGG + chr6_1:9584685-9584704 Msa0873950:intron 15.0%
!! TAATAGATTATACAGATATT+CGG - chr6_1:9584881-9584900 None:intergenic 15.0%
!!! TTCAGTTTTATAATTAGTTT+AGG + chr6_1:9585796-9585815 Msa0873950:intron 15.0%
!!! TCAGTTTTATAATTAGTTTA+GGG + chr6_1:9585797-9585816 Msa0873950:intron 15.0%
!!! ACTTTAAAAAGAAAAACTAT+TGG - chr6_1:9586312-9586331 None:intergenic 15.0%
!!! TTTACCAAAATTTTTAACAT+TGG + chr6_1:9586361-9586380 Msa0873950:intron 15.0%
!! AAAAAGATAAGATATTCAAT+TGG + chr6_1:9586581-9586600 Msa0873950:intron 15.0%
!! TGTTAATAATATTTGAGTAA+TGG + chr6_1:9589092-9589111 Msa0873950:intron 15.0%
!!! AATGATTGAAAGATTGATTT+TGG - chr6_1:9581749-9581768 None:intergenic 20.0%
!!! AATCATTTCATCTTTTTTGT+TGG + chr6_1:9581762-9581781 Msa0873950:intron 20.0%
!!! ATCATTTCATCTTTTTTGTT+GGG + chr6_1:9581763-9581782 Msa0873950:intron 20.0%
!!! TGAACAAATTTTTTGTTTAG+TGG - chr6_1:9582219-9582238 None:intergenic 20.0%
!!! CTAAACAAAAAATTTGTTCA+TGG + chr6_1:9582219-9582238 Msa0873950:intron 20.0%
!!! ATTGGATTTTAAAAATTAGG+TGG - chr6_1:9582293-9582312 None:intergenic 20.0%
!!! ACCTAATTTTTAAAATCCAA+TGG + chr6_1:9582292-9582311 Msa0873950:intron 20.0%
!!! TCCATTGGATTTTAAAAATT+AGG - chr6_1:9582296-9582315 None:intergenic 20.0%
!! TAACAAAGAAAAAAAACCAA+TGG + chr6_1:9582325-9582344 Msa0873950:intron 20.0%
!!! TATTATTTGAAGTAATCCAT+TGG - chr6_1:9582344-9582363 None:intergenic 20.0%
!!! CTTAAAAACAATGAAGTATT+GGG + chr6_1:9582792-9582811 Msa0873950:intron 20.0%
!!! CATTATTAGATTTTATTGGA+TGG - chr6_1:9582929-9582948 None:intergenic 20.0%
!! CATCCAATAAAATCTAATAA+TGG + chr6_1:9582927-9582946 Msa0873950:intron 20.0%
!!! CATCCATTATTAGATTTTAT+TGG - chr6_1:9582933-9582952 None:intergenic 20.0%
!!! CAATAAAATCTAATAATGGA+TGG + chr6_1:9582931-9582950 Msa0873950:intron 20.0%
!!! AAAAAAATAGTGGATTGTAA+TGG + chr6_1:9583005-9583024 Msa0873950:intron 20.0%
!! TCATGAATTAAATATCAAGA+AGG - chr6_1:9583279-9583298 None:intergenic 20.0%
!!! ATCTCTTATTTGATAATCAA+TGG - chr6_1:9583462-9583481 None:intergenic 20.0%
!! TGTTGTATATAATAAAGCAA+AGG - chr6_1:9584347-9584366 None:intergenic 20.0%
!! AAAATATCATGCATTTATCA+GGG - chr6_1:9584479-9584498 None:intergenic 20.0%
!!! AAGTTTGTTATTTGATTATC+TGG + chr6_1:9585185-9585204 Msa0873950:intron 20.0%
!! AAAACAACATATATAGGTAT+CGG - chr6_1:9585346-9585365 None:intergenic 20.0%
!!! CAGTTTTATAATTAGTTTAG+GGG + chr6_1:9585798-9585817 Msa0873950:intron 20.0%
!! ATAAAATCAGTGACATTAAT+TGG + chr6_1:9585906-9585925 Msa0873950:intron 20.0%
!!! TATACTTTTTGACAAGATAT+TGG + chr6_1:9585932-9585951 Msa0873950:intron 20.0%
!! ATTTCCAAAAAAGAAAAAAG+TGG - chr6_1:9585994-9586013 None:intergenic 20.0%
!! AAGAAATTACTCTAACAATT+TGG + chr6_1:9586182-9586201 Msa0873950:intron 20.0%
!!! AGATCCAATGTTAAAAATTT+TGG - chr6_1:9586368-9586387 None:intergenic 20.0%
!! TTCATCTTAACAAGAATTTA+AGG + chr6_1:9586490-9586509 Msa0873950:intron 20.0%
!! AAAGACAACATATTAAAAGT+AGG + chr6_1:9586533-9586552 Msa0873950:intron 20.0%
!! AATTCATTGTGAAGTTAATA+GGG + chr6_1:9587076-9587095 Msa0873950:intron 20.0%
!!! ATTAATCAAGTTTGATAACT+AGG + chr6_1:9587381-9587400 Msa0873950:intron 20.0%
!!! GAAATTTTATTTCTAAGTCT+TGG - chr6_1:9587493-9587512 None:intergenic 20.0%
!! AGAAATAAAATTTCTAACAC+TGG + chr6_1:9587499-9587518 Msa0873950:intron 20.0%
!! ATGAATTATGAAAATACCTT+TGG - chr6_1:9587917-9587936 None:intergenic 20.0%
!! ATAATTCATATTGCCTAATT+TGG + chr6_1:9587928-9587947 Msa0873950:intron 20.0%
!! AGAAATTAATCATAAGTTTC+TGG - chr6_1:9588594-9588613 None:intergenic 20.0%
!!! ACTTTTAAGAATGAAAGATT+CGG - chr6_1:9588833-9588852 None:intergenic 20.0%
!! ATCTTTCATTCTTAAAAGTT+AGG + chr6_1:9588834-9588853 Msa0873950:intron 20.0%
!! TCTTTCATTCTTAAAAGTTA+GGG + chr6_1:9588835-9588854 Msa0873950:intron 20.0%
!!! TAAAATTTTTGTAGTACCAA+TGG - chr6_1:9589131-9589150 None:intergenic 20.0%
!! GAAAAGTAATTAGAGTTTAA+CGG - chr6_1:9589232-9589251 None:intergenic 20.0%
! CACTTTATATAATGATCCTA+AGG - chr6_1:9581694-9581713 None:intergenic 25.0%
! AGAAAATCTAGAGAATCATA+GGG - chr6_1:9581841-9581860 None:intergenic 25.0%
! ATCATCAACAATACAAACAA+CGG - chr6_1:9581890-9581909 None:intergenic 25.0%
!! ATGATGAGATTGATTTCAAT+TGG + chr6_1:9581905-9581924 Msa0873950:intron 25.0%
!! TGATTTCAATTGGTTTAAGT+TGG + chr6_1:9581915-9581934 Msa0873950:intron 25.0%
! AAAACACAAACATTCAGAAT+AGG - chr6_1:9582045-9582064 None:intergenic 25.0%
!!! TGTGTTTTTTTCTTTCTTTC+CGG + chr6_1:9582057-9582076 Msa0873950:intron 25.0%
!!! CAAATTTTTTGTTTAGTGGA+TGG - chr6_1:9582215-9582234 None:intergenic 25.0%
!! CAAAAAATTTGTTCATGGAT+TGG + chr6_1:9582224-9582243 Msa0873950:intron 25.0%
!!! GATTTTAAAAATTAGGTGGA+TGG - chr6_1:9582289-9582308 None:intergenic 25.0%
! TATTATTTAATTACAGGTGG+TGG + chr6_1:9582522-9582541 Msa0873950:intron 25.0%
! ATTAATTAAATGGTGAACAG+TGG - chr6_1:9582723-9582742 None:intergenic 25.0%
! GCTTAAAAACAATGAAGTAT+TGG + chr6_1:9582791-9582810 Msa0873950:intron 25.0%
!! ATACACTTTGATTTATGGAT+CGG + chr6_1:9582894-9582913 Msa0873950:intron 25.0%
!!! AAATCTAATAATGGATGGAT+TGG + chr6_1:9582936-9582955 Msa0873950:intron 25.0%
!! ATAATACTTAATGGATGGAT+CGG + chr6_1:9582965-9582984 Msa0873950:intron 25.0%
! ATAATTCTTTCATTTGATGC+AGG + chr6_1:9583184-9583203 Msa0873950:intron 25.0%
! TGAATGACTTATTCTTAATG+CGG - chr6_1:9583366-9583385 None:intergenic 25.0%
! TTTAAATCGTTTACTTAGGT+TGG + chr6_1:9583418-9583437 Msa0873950:intron 25.0%
!!! ATTTTGATTTCCAAGCAAAA+TGG - chr6_1:9584298-9584317 None:intergenic 25.0%
!! ATTTTGCTTGGAAATCAAAA+TGG + chr6_1:9584297-9584316 Msa0873950:intron 25.0%
!! ACATTGCTTTGTAATTTGTA+TGG + chr6_1:9584407-9584426 Msa0873950:intron 25.0%
! AAATATCATGCATTTATCAG+GGG - chr6_1:9584478-9584497 None:intergenic 25.0%
! GAAAATATCATGCATTTATC+AGG - chr6_1:9584480-9584499 None:intergenic 25.0%
! AAACTTCTTGCATTAAAAGA+AGG + chr6_1:9584988-9585007 Msa0873950:CDS 25.0%
! ATGTAATGTCAACTAAATCA+TGG + chr6_1:9585237-9585256 Msa0873950:intron 25.0%
! TGTAATGTCAACTAAATCAT+GGG + chr6_1:9585238-9585257 Msa0873950:intron 25.0%
! GAATGAGATAAACTCTAATA+TGG - chr6_1:9585281-9585300 None:intergenic 25.0%
!!! GAGATTTCTTCTTTGTTATT+TGG - chr6_1:9585599-9585618 None:intergenic 25.0%
!!! AAGAAAGTTTTGTATATTGC+AGG + chr6_1:9585757-9585776 Msa0873950:intron 25.0%
!!! TATTGCTTTTGAGAAATGTA+GGG - chr6_1:9585831-9585850 None:intergenic 25.0%
!!! ATGTCCACTTTTTTCTTTTT+TGG + chr6_1:9585987-9586006 Msa0873950:intron 25.0%
! AGAGTACATTTCTTGTTAAA+AGG - chr6_1:9586028-9586047 None:intergenic 25.0%
! AGAAATGTACTCTAACAATT+TGG + chr6_1:9586035-9586054 Msa0873950:intron 25.0%
! TGGTTAATAATTTCATGCAT+AGG + chr6_1:9586601-9586620 Msa0873950:intron 25.0%
! CAATTCATTGTGAAGTTAAT+AGG + chr6_1:9587075-9587094 Msa0873950:intron 25.0%
! ATGTTGTTAAGATATACCAA+TGG - chr6_1:9587108-9587127 None:intergenic 25.0%
! TATCTTAACAACATTACAGA+AGG + chr6_1:9587114-9587133 Msa0873950:CDS 25.0%
! ATCTTAACAACATTACAGAA+GGG + chr6_1:9587115-9587134 Msa0873950:CDS 25.0%
!!! AACTTTAGTTTGTGATATAG+AGG - chr6_1:9587213-9587232 None:intergenic 25.0%
!!! AGTAATGAGACCTTTATTTT+CGG - chr6_1:9587341-9587360 None:intergenic 25.0%
! ATAGACTTCAACATTATAAG+CGG - chr6_1:9587551-9587570 None:intergenic 25.0%
! AACATGAACAATACTATATG+TGG - chr6_1:9587582-9587601 None:intergenic 25.0%
! ATATAGTATTGTTCATGTTG+TGG + chr6_1:9587583-9587602 Msa0873950:intron 25.0%
!!! GACATTTTTTATATGACATC+AGG - chr6_1:9588349-9588368 None:intergenic 25.0%
! AATAGTAAAGAGCTACATTT+AGG - chr6_1:9588695-9588714 None:intergenic 25.0%
! TTTGCAGTTATATATTTGCA+GGG - chr6_1:9589063-9589082 None:intergenic 25.0%
! ATTTGCAGTTATATATTTGC+AGG - chr6_1:9589064-9589083 None:intergenic 25.0%
! GTAACATAAAAGTGACATTA+TGG - chr6_1:9589177-9589196 None:intergenic 25.0%
CAGAAAATCTAGAGAATCAT+AGG - chr6_1:9581842-9581861 None:intergenic 30.0%
GATTATGAGATCATTGCAAT+TGG + chr6_1:9581942-9581961 Msa0873950:intron 30.0%
! CATCGTGGAACATATAATTT+TGG + chr6_1:9581965-9581984 Msa0873950:intron 30.0%
CATGAAACAGAATTAAGTCA+TGG - chr6_1:9582014-9582033 None:intergenic 30.0%
! AACATTCAGAATAGGTCTTT+TGG - chr6_1:9582037-9582056 None:intergenic 30.0%
!!! GTGTTTTTTTCTTTCTTTCC+GGG + chr6_1:9582058-9582077 Msa0873950:intron 30.0%
!!! TAGTGGTTACATTAGTTTTC+AGG + chr6_1:9582104-9582123 Msa0873950:intron 30.0%
!! TTTTTGTTTAGTGGATGGAT+TGG - chr6_1:9582210-9582229 None:intergenic 30.0%
AATCCATCCATTAAAGACTA+TGG + chr6_1:9582252-9582271 Msa0873950:intron 30.0%
AATCCATCCATAGTCTTTAA+TGG - chr6_1:9582262-9582281 None:intergenic 30.0%
TTGTTAAAGATGTGATCCAT+TGG - chr6_1:9582311-9582330 None:intergenic 30.0%
GGCTTATGTCAAACATTATT+GGG + chr6_1:9582769-9582788 Msa0873950:intron 30.0%
TGGATGGACATAATACTTAA+TGG + chr6_1:9582956-9582975 Msa0873950:intron 30.0%
TGGACATAATACTTAATGGA+TGG + chr6_1:9582960-9582979 Msa0873950:intron 30.0%
! CTTAATGGATGGATCAAAAA+GGG - chr6_1:9583040-9583059 None:intergenic 30.0%
! TCTTAATGGATGGATCAAAA+AGG - chr6_1:9583041-9583060 None:intergenic 30.0%
GATATGGATTTGGATCTTAA+TGG - chr6_1:9583055-9583074 None:intergenic 30.0%
ATAGCAACAAACAAACATTC+AGG - chr6_1:9583164-9583183 None:intergenic 30.0%
AGAAGGAAAACTAACTTCTT+GGG - chr6_1:9583262-9583281 None:intergenic 30.0%
AAGAAGGAAAACTAACTTCT+TGG - chr6_1:9583263-9583282 None:intergenic 30.0%
!!! GTTGTTTTTAGAGAATCACT+TGG + chr6_1:9583805-9583824 Msa0873950:intron 30.0%
!! ATTCTTTTCCACCTACTTTT+AGG + chr6_1:9583849-9583868 Msa0873950:intron 30.0%
! CTTTTCCTCAATGTGTATTA+GGG - chr6_1:9584049-9584068 None:intergenic 30.0%
! ACTTTTCCTCAATGTGTATT+AGG - chr6_1:9584050-9584069 None:intergenic 30.0%
!!! TTTTCAAGTACTCATCAAGT+GGG - chr6_1:9584211-9584230 None:intergenic 30.0%
!!! TTTTTCAAGTACTCATCAAG+TGG - chr6_1:9584212-9584231 None:intergenic 30.0%
GATGAGTACTTGAAAAATCA+TGG + chr6_1:9584215-9584234 Msa0873950:intron 30.0%
! CAAATCAATACCATTTTGCT+TGG + chr6_1:9584285-9584304 Msa0873950:intron 30.0%
ATAATAAAGCAAAGGTGAGA+AGG - chr6_1:9584339-9584358 None:intergenic 30.0%
! CATGATATTTTCCATGTACA+AGG + chr6_1:9584488-9584507 Msa0873950:intron 30.0%
TTGATGAAGTAATCCAAGTA+AGG + chr6_1:9584573-9584592 Msa0873950:intron 30.0%
ATGCTCATAAGTTAACCAAA+AGG - chr6_1:9584712-9584731 None:intergenic 30.0%
! TAAGAGTTGCCATTTATCAA+TGG - chr6_1:9584921-9584940 None:intergenic 30.0%
ATCGGGAAAACAACATATAT+AGG - chr6_1:9585352-9585371 None:intergenic 30.0%
TTTGCTTCTCAAATTTGAAG+TGG + chr6_1:9585486-9585505 Msa0873950:intron 30.0%
! TTGCTTCTCAAATTTGAAGT+GGG + chr6_1:9585487-9585506 Msa0873950:intron 30.0%
CATCATGTTGCATATGTAAA+AGG - chr6_1:9585573-9585592 None:intergenic 30.0%
! AAACTTTCTTTTCTGTCCAT+CGG - chr6_1:9585747-9585766 None:intergenic 30.0%
!! CTATTGCTTTTGAGAAATGT+AGG - chr6_1:9585832-9585851 None:intergenic 30.0%
CAATGAAGTAACACATTAAC+AGG - chr6_1:9586255-9586274 None:intergenic 30.0%
! AACATGACAATAGTAGCTTT+TGG + chr6_1:9586644-9586663 Msa0873950:intron 30.0%
! ATAGTAGCTTTTGGATCTTA+AGG + chr6_1:9586653-9586672 Msa0873950:intron 30.0%
! GATTATTACCAGGAATTTTC+AGG - chr6_1:9586687-9586706 None:intergenic 30.0%
TGATTTACTACTTACTACCA+AGG - chr6_1:9586769-9586788 None:intergenic 30.0%
!!! TCCTTGTTTTGTCTTTCTTT+TGG + chr6_1:9586798-9586817 Msa0873950:intron 30.0%
ACCAAAAGAAAGACAAAACA+AGG - chr6_1:9586802-9586821 None:intergenic 30.0%
! TTTTGTCTTTCTTTTGGTGA+AGG + chr6_1:9586804-9586823 Msa0873950:intron 30.0%
CAGTGAAGATATAAAAGAGA+GGG - chr6_1:9586970-9586989 None:intergenic 30.0%
ACAGTGAAGATATAAAAGAG+AGG - chr6_1:9586971-9586990 None:intergenic 30.0%
!!! TAATCTTGTTTTTCTCACTC+AGG + chr6_1:9587290-9587309 Msa0873950:intron 30.0%
ATTGAAGATGCCGAAAATAA+AGG + chr6_1:9587328-9587347 Msa0873950:CDS 30.0%
AATCAGTAATATACCTTTGC+AGG - chr6_1:9587364-9587383 None:intergenic 30.0%
!! TCTTACAAGTTTTATGAGTC+CGG - chr6_1:9587416-9587435 None:intergenic 30.0%
TATAAAGACTGTTCTTGTTG+AGG + chr6_1:9587649-9587668 Msa0873950:intron 30.0%
AAAATTATACTGCGAGCTTT+CGG + chr6_1:9587770-9587789 Msa0873950:intron 30.0%
!!! AGTTGATGGAGTTTTTGAAA+AGG + chr6_1:9587826-9587845 Msa0873950:intron 30.0%
TGATCGAGCATATAACTATT+AGG - chr6_1:9587875-9587894 None:intergenic 30.0%
TATTGCCTAATTTGGTTGAT+AGG + chr6_1:9587936-9587955 Msa0873950:intron 30.0%
TTCAACCTATCAACCAAATT+AGG - chr6_1:9587944-9587963 None:intergenic 30.0%
!! ACCTTGTATACTTTTTGTGT+TGG + chr6_1:9588148-9588167 Msa0873950:intron 30.0%
!! CCTTGTATACTTTTTGTGTT+GGG + chr6_1:9588149-9588168 Msa0873950:intron 30.0%
TTCAAAATTGCACTTTCAGT+TGG - chr6_1:9588271-9588290 None:intergenic 30.0%
!! ACTGAAAGTGCAATTTTGAA+TGG + chr6_1:9588271-9588290 Msa0873950:CDS 30.0%
TTCAGAATAGTAAAATCACC+TGG - chr6_1:9588304-9588323 None:intergenic 30.0%
TCCATTTGAACACATTTCAA+AGG + chr6_1:9588440-9588459 Msa0873950:intron 30.0%
CAAGCATATTGTTCTTACTT+AGG - chr6_1:9588619-9588638 None:intergenic 30.0%
! TGAACTTTTGAACTGATACT+TGG + chr6_1:9588640-9588659 Msa0873950:intron 30.0%
TATAATATATGTGCATGACC+TGG - chr6_1:9588767-9588786 None:intergenic 30.0%
TATAGTTCACAAAACCTTGT+TGG - chr6_1:9588913-9588932 None:intergenic 30.0%
!! AACAAGGTTTTGTGAACTAT+AGG + chr6_1:9588912-9588931 Msa0873950:intron 30.0%
ACATTATGGTGAGATAAGAT+TGG - chr6_1:9589163-9589182 None:intergenic 30.0%
ATTCAAAATTCATGTCTGCA+TGG - chr6_1:9589751-9589770 None:intergenic 30.0%
GAATGAACCATTACGTTTAA+CGG + chr6_1:9589767-9589786 Msa0873950:three_prime_UTR 30.0%
ACATGGTTGAGATATACTAG+TGG - chr6_1:9581484-9581503 None:intergenic 35.0%
AGTATATCTCAACCATGTTG+TGG + chr6_1:9581486-9581505 Msa0873950:CDS 35.0%
!! TTCTAGCTTTGCAGCAATTT+GGG - chr6_1:9581524-9581543 None:intergenic 35.0%
!! TTTCTAGCTTTGCAGCAATT+TGG - chr6_1:9581525-9581544 None:intergenic 35.0%
! GTGATTAGTTGTAGTACCTT+AGG + chr6_1:9581675-9581694 Msa0873950:intron 35.0%
GGCAAATGTTAGTAAGTTAG+TGG + chr6_1:9582087-9582106 Msa0873950:intron 35.0%
TTTCAGGCATTTCATCACTT+TGG + chr6_1:9582120-9582139 Msa0873950:intron 35.0%
CATTTCATCACTTTGGACTA+GGG + chr6_1:9582127-9582146 Msa0873950:intron 35.0%
! ATTTCATCACTTTGGACTAG+GGG + chr6_1:9582128-9582147 Msa0873950:intron 35.0%
!!! GGATTTTATAGTGGATGGAT+CGG - chr6_1:9582185-9582204 None:intergenic 35.0%
!! TGGATGGATTTTATAGTGGA+TGG - chr6_1:9582190-9582209 None:intergenic 35.0%
!! GGATTGGATGGATTTTATAG+TGG - chr6_1:9582194-9582213 None:intergenic 35.0%
CATCCATAGTCTTTAATGGA+TGG - chr6_1:9582258-9582277 None:intergenic 35.0%
CATCCATTAAAGACTATGGA+TGG + chr6_1:9582256-9582275 Msa0873950:intron 35.0%
AATTAAATGGTGAACAGTGG+TGG - chr6_1:9582720-9582739 None:intergenic 35.0%
GGGCTTATGTCAAACATTAT+TGG + chr6_1:9582768-9582787 Msa0873950:intron 35.0%
! ACTTTGATTTATGGATCGGA+TGG + chr6_1:9582898-9582917 Msa0873950:intron 35.0%
!! CTAATAATGGATGGATTGGA+TGG + chr6_1:9582940-9582959 Msa0873950:intron 35.0%
!! AGTGGATTGTAATGGACTAA+TGG + chr6_1:9583013-9583032 Msa0873950:intron 35.0%
TGGATTTGGATCTTAATGGA+TGG - chr6_1:9583051-9583070 None:intergenic 35.0%
TCTTTCATTTGATGCAGGAT+AGG + chr6_1:9583189-9583208 Msa0873950:intron 35.0%
GAAGGAAAACTAACTTCTTG+GGG - chr6_1:9583261-9583280 None:intergenic 35.0%
TGGTCAAAAGAGTTAGTAGA+AGG - chr6_1:9583333-9583352 None:intergenic 35.0%
!!! TTACTTAGGTTGGTTTTGTG+TGG + chr6_1:9583428-9583447 Msa0873950:intron 35.0%
TGCTGAAGAATGTAAGCATT+GGG - chr6_1:9583741-9583760 None:intergenic 35.0%
TTGCTGAAGAATGTAAGCAT+TGG - chr6_1:9583742-9583761 None:intergenic 35.0%
TTGACACAACTAACACCTTT+GGG - chr6_1:9583782-9583801 None:intergenic 35.0%
ATTGACACAACTAACACCTT+TGG - chr6_1:9583783-9583802 None:intergenic 35.0%
TTCACAGTGAACCTAAAAGT+AGG - chr6_1:9583863-9583882 None:intergenic 35.0%
AATAAGAAGGAAAACTCACC+AGG - chr6_1:9583981-9584000 None:intergenic 35.0%
AAGTTCCCTAATACACATTG+AGG + chr6_1:9584041-9584060 Msa0873950:intron 35.0%
! AAAGTATCACCTTCACCATT+CGG + chr6_1:9584065-9584084 Msa0873950:intron 35.0%
TCATTCATGTCAATTGCTGA+CGG + chr6_1:9584092-9584111 Msa0873950:intron 35.0%
! CACATTTGATTGATTCATCG+AGG - chr6_1:9584126-9584145 None:intergenic 35.0%
CAAATGTGCAAATACTGTCA+CGG + chr6_1:9584138-9584157 Msa0873950:intron 35.0%
CATGGATTCTGATTTCTGTT+TGG + chr6_1:9584233-9584252 Msa0873950:intron 35.0%
GGGGAATGATACATATAAGA+GGG - chr6_1:9584459-9584478 None:intergenic 35.0%
AGGGGAATGATACATATAAG+AGG - chr6_1:9584460-9584479 None:intergenic 35.0%
CAATTCCTTGGATCTTATGA+GGG - chr6_1:9584514-9584533 None:intergenic 35.0%
CAAAAGATTCATGCCTTACT+TGG - chr6_1:9584589-9584608 None:intergenic 35.0%
! AAATAAAGTAGGGGTCCTTT+TGG + chr6_1:9584694-9584713 Msa0873950:intron 35.0%
!!! GTCTTTTTTTCCTCTCTTCT+TGG + chr6_1:9584747-9584766 Msa0873950:intron 35.0%
! GTGCGTGAATTTTCATAATG+TGG - chr6_1:9584778-9584797 None:intergenic 35.0%
CGCTATAGTCCATTGATAAA+TGG + chr6_1:9584909-9584928 Msa0873950:intron 35.0%
TGCATTAAAAGAAGGTTTGC+TGG + chr6_1:9584996-9585015 Msa0873950:CDS 35.0%
AATTAAGGTTGCAAAGAAGC+CGG + chr6_1:9585137-9585156 Msa0873950:CDS 35.0%
! ATGAGTTTTCCAGCATTTTC+CGG - chr6_1:9585159-9585178 None:intergenic 35.0%
!!! TATGTTGTTTTCCCGATCTT+TGG + chr6_1:9585355-9585374 Msa0873950:intron 35.0%
! ATTCAAAGAGCACAGATGAT+AGG - chr6_1:9585390-9585409 None:intergenic 35.0%
! TTCTCAAATTTGAAGTGGGA+TGG + chr6_1:9585491-9585510 Msa0873950:intron 35.0%
! TCTCAAATTTGAAGTGGGAT+GGG + chr6_1:9585492-9585511 Msa0873950:intron 35.0%
CTCATGTTACAGTTTGTGTT+TGG + chr6_1:9585530-9585549 Msa0873950:intron 35.0%
TTACTCTAACAATTTGGCAG+AGG + chr6_1:9586188-9586207 Msa0873950:intron 35.0%
TACTCTAACAATTTGGCAGA+GGG + chr6_1:9586189-9586208 Msa0873950:intron 35.0%
! GCTACTATTGTCATGTTTTG+TGG - chr6_1:9586641-9586660 None:intergenic 35.0%
AATGTCAACCTGAAAATTCC+TGG + chr6_1:9586676-9586695 Msa0873950:intron 35.0%
! GACAGTTTAGGATTATTACC+AGG - chr6_1:9586697-9586716 None:intergenic 35.0%
TACTTACTACCAAGGCAAAT+AGG - chr6_1:9586761-9586780 None:intergenic 35.0%
GAAAGACAAAACAAGGAGAT+TGG - chr6_1:9586795-9586814 None:intergenic 35.0%
CCATGTTATCTGATGAAGAA+AGG - chr6_1:9586881-9586900 None:intergenic 35.0%
CCTTTCTTCATCAGATAACA+TGG + chr6_1:9586878-9586897 Msa0873950:CDS 35.0%
GCAACACTTTGCAATTAAGA+AGG + chr6_1:9586902-9586921 Msa0873950:CDS 35.0%
! TTCACTGTCTTATTCAGCTA+TGG + chr6_1:9586983-9587002 Msa0873950:intron 35.0%
! GATAACTAGGTTTTCTTTCC+CGG + chr6_1:9587394-9587413 Msa0873950:intron 35.0%
!! CTTACAAGTTTTATGAGTCC+GGG - chr6_1:9587415-9587434 None:intergenic 35.0%
AAAAACTCCATCAACTCCTT+TGG - chr6_1:9587822-9587841 None:intergenic 35.0%
TGAAAATCCTGTCAATCCAA+AGG + chr6_1:9587898-9587917 Msa0873950:intron 35.0%
GAAAATACCTTTGGATTGAC+AGG - chr6_1:9587908-9587927 None:intergenic 35.0%
TATCTAAGTTTCTCTCCTTG+AGG - chr6_1:9588111-9588130 None:intergenic 35.0%
GGAGAGAAACTTAGATATGA+AGG + chr6_1:9588114-9588133 Msa0873950:CDS 35.0%
! CCCAACACAAAAAGTATACA+AGG - chr6_1:9588152-9588171 None:intergenic 35.0%
!! GAAAGTGCAATTTTGAATGG+AGG + chr6_1:9588274-9588293 Msa0873950:CDS 35.0%
AATTCTTAGACAACCAGTTG+AGG + chr6_1:9588398-9588417 Msa0873950:intron 35.0%
AATCAATTAACGACCTCAAC+TGG - chr6_1:9588414-9588433 None:intergenic 35.0%
!! GCCTTTGAAATGTGTTCAAA+TGG - chr6_1:9588444-9588463 None:intergenic 35.0%
CAACATCTAATCCAAGGTAT+CGG + chr6_1:9588464-9588483 Msa0873950:CDS 35.0%
TCTCCTAGATGAAGTTATTC+AGG + chr6_1:9588520-9588539 Msa0873950:CDS 35.0%
CTACCTGAATAACTTCATCT+AGG - chr6_1:9588526-9588545 None:intergenic 35.0%
! GACAAAGCTTTGTCAAGATT+TGG - chr6_1:9588741-9588760 None:intergenic 35.0%
TTGAGTTACATAGTGACATG+AGG + chr6_1:9588794-9588813 Msa0873950:intron 35.0%
!! ATACTAGCTCTGCAAATACA+AGG + chr6_1:9588874-9588893 Msa0873950:intron 35.0%
!! TACTAGCTCTGCAAATACAA+GGG + chr6_1:9588875-9588894 Msa0873950:intron 35.0%
!! TGCTTTGAAAGAAGGTTTAC+TGG + chr6_1:9588972-9588991 Msa0873950:intron 35.0%
!! TTGAGTAATGGATATGCATC+AGG + chr6_1:9589104-9589123 Msa0873950:intron 35.0%
!! TGAGTAATGGATATGCATCA+GGG + chr6_1:9589105-9589124 Msa0873950:intron 35.0%
! ATGTGAATGTCTTTTGCAGA+TGG + chr6_1:9589261-9589280 Msa0873950:intron 35.0%
! TGTGAATGTCTTTTGCAGAT+GGG + chr6_1:9589262-9589281 Msa0873950:intron 35.0%
ATTCAAAATCGTTGTTGTGC+AGG + chr6_1:9589496-9589515 Msa0873950:intron 35.0%
ACTTTGTGAATGACAACGTT+TGG + chr6_1:9589691-9589710 Msa0873950:three_prime_UTR 35.0%
! TTGGTCACTAAGAACTTGTT+AGG + chr6_1:9589793-9589812 Msa0873950:three_prime_UTR 35.0%
TTACTCTTGCGGAGAAAATT+TGG - chr6_1:9589846-9589865 None:intergenic 35.0%
! AAATTTTCTCCGCAAGAGTA+AGG + chr6_1:9589845-9589864 Msa0873950:three_prime_UTR 35.0%
! TAGTTTTCTCCTTACTCTTG+CGG - chr6_1:9589857-9589876 None:intergenic 35.0%
TATCTCAACCATGTTGTGGA+TGG + chr6_1:9581490-9581509 Msa0873950:CDS 40.0%
TGCTGCAAAGCTAGAAATGA+TGG + chr6_1:9581528-9581547 Msa0873950:CDS 40.0%
TGATGTTGAGATACGATGCA+TGG - chr6_1:9581794-9581813 None:intergenic 40.0%
GCATTTCATCACTTTGGACT+AGG + chr6_1:9582126-9582145 Msa0873950:intron 40.0%
!! TTTATAGTGGATGGATCGGA+TGG - chr6_1:9582181-9582200 None:intergenic 40.0%
!! TGTTTAGTGGATGGATTGGA+TGG - chr6_1:9582206-9582225 None:intergenic 40.0%
! TACTTAATGGATGGATCGGA+TGG + chr6_1:9582969-9582988 Msa0873950:intron 40.0%
GGATTGGATGGATATGGATT+TGG - chr6_1:9583065-9583084 None:intergenic 40.0%
!! ATGGATGGATTGGATGGATA+TGG - chr6_1:9583071-9583090 None:intergenic 40.0%
ACATGTGAAGTCCAAAGTAG+GGG - chr6_1:9583101-9583120 None:intergenic 40.0%
CACATGTGAAGTCCAAAGTA+GGG - chr6_1:9583102-9583121 None:intergenic 40.0%
ACACATGTGAAGTCCAAAGT+AGG - chr6_1:9583103-9583122 None:intergenic 40.0%
CATGATTATTGCAGATGCTG+AGG + chr6_1:9583218-9583237 Msa0873950:CDS 40.0%
CTTAATGCGGCTACTAAAGT+TGG - chr6_1:9583353-9583372 None:intergenic 40.0%
ATACCAGTGTTTCCACTAGT+AGG - chr6_1:9583540-9583559 None:intergenic 40.0%
ACTAGTGGAAACACTGGTAT+TGG + chr6_1:9583540-9583559 Msa0873950:CDS 40.0%
!! TGGAAACACTGGTATTGGTT+TGG + chr6_1:9583545-9583564 Msa0873950:CDS 40.0%
!! TGGTATTGGTTTGGCATTCA+TGG + chr6_1:9583554-9583573 Msa0873950:CDS 40.0%
AGAACTATTCTCCGTGCTTT+CGG + chr6_1:9583636-9583655 Msa0873950:CDS 40.0%
TGAAAATCCTGCAAACCCAA+AGG + chr6_1:9583764-9583783 Msa0873950:CDS 40.0%
ACAGTGAACCTAAAAGTAGG+TGG - chr6_1:9583860-9583879 None:intergenic 40.0%
TAGGTTCACTGTGAAACTAC+TGG + chr6_1:9583868-9583887 Msa0873950:intron 40.0%
!! AAAGTTGATGCCCTTGTTTC+TGG + chr6_1:9583919-9583938 Msa0873950:CDS 40.0%
GGTTCCTATACCAGAAACAA+GGG - chr6_1:9583932-9583951 None:intergenic 40.0%
!! CTTGTTTCTGGTATAGGAAC+CGG + chr6_1:9583931-9583950 Msa0873950:CDS 40.0%
AAGTATCACCTTCACCATTC+GGG + chr6_1:9584066-9584085 Msa0873950:intron 40.0%
ACAAGTGCATACAATCATCG+AGG - chr6_1:9584178-9584197 None:intergenic 40.0%
GTTTGGTACTTACTACGTAC+TGG + chr6_1:9584250-9584269 Msa0873950:intron 40.0%
CCAATTCCTTGGATCTTATG+AGG - chr6_1:9584515-9584534 None:intergenic 40.0%
CCTCATAAGATCCAAGGAAT+TGG + chr6_1:9584512-9584531 Msa0873950:intron 40.0%
TGGTTAACTTATGAGCATGC+AGG + chr6_1:9584714-9584733 Msa0873950:intron 40.0%
ACGCACTTACTGTTCATCTT+TGG + chr6_1:9584792-9584811 Msa0873950:intron 40.0%
CGCACTTACTGTTCATCTTT+GGG + chr6_1:9584793-9584812 Msa0873950:intron 40.0%
! CTGTTCATCTTTGGGAAAGA+TGG + chr6_1:9584801-9584820 Msa0873950:intron 40.0%
AGTTTCAATAGCTTCTTCGC+TGG - chr6_1:9584965-9584984 None:intergenic 40.0%
CTTTGCAACCTTAATTGCAG+CGG - chr6_1:9585133-9585152 None:intergenic 40.0%
ATGTCAACTAAATCATGGGC+TGG + chr6_1:9585242-9585261 Msa0873950:intron 40.0%
GTAACATGAGATGCTACCAT+TGG - chr6_1:9585520-9585539 None:intergenic 40.0%
! TACAAAAAATGCAGTGCCGA+TGG + chr6_1:9585728-9585747 Msa0873950:intron 40.0%
ACTCTAACAATTTGGCAGAG+GGG + chr6_1:9586190-9586209 Msa0873950:intron 40.0%
TGCATGTCTTCTGACAGTTT+AGG - chr6_1:9586709-9586728 None:intergenic 40.0%
CAGAAGACATGCAACTGATT+AGG + chr6_1:9586716-9586735 Msa0873950:intron 40.0%
TGCAACTGATTAGGTGAAGT+TGG + chr6_1:9586725-9586744 Msa0873950:intron 40.0%
GTTAATAGGGAACACACCAT+TGG + chr6_1:9587089-9587108 Msa0873950:intron 40.0%
CTCTCAAGACTCACAAAAGA+TGG - chr6_1:9587749-9587768 None:intergenic 40.0%
TAGACTCATTATGAGACCAC+TGG + chr6_1:9587995-9588014 Msa0873950:intron 40.0%
AGAATTGATGCTTTGGTTGC+AGG + chr6_1:9588046-9588065 Msa0873950:CDS 40.0%
GAATTGATGCTTTGGTTGCA+GGG + chr6_1:9588047-9588066 Msa0873950:CDS 40.0%
! ATTTTGAATGGAGGAAAGCC+AGG + chr6_1:9588283-9588302 Msa0873950:CDS 40.0%
AAAGGCCAACATCTAATCCA+AGG + chr6_1:9588458-9588477 Msa0873950:intron 40.0%
! CGATACCTTGGATTAGATGT+TGG - chr6_1:9588466-9588485 None:intergenic 40.0%
!! CTAATCCAAGGTATCGGTAA+TGG + chr6_1:9588470-9588489 Msa0873950:CDS 40.0%
AGCTTGCAACACTAATACAC+TGG + chr6_1:9588544-9588563 Msa0873950:intron 40.0%
!!! GGATTCTGTTTTGACCAACA+AGG + chr6_1:9588896-9588915 Msa0873950:intron 40.0%
!! AAGCTGCTTGCTTTGAAAGA+AGG + chr6_1:9588964-9588983 Msa0873950:intron 40.0%
TTGCAGATGGGAATTTCATC+AGG + chr6_1:9589274-9589293 Msa0873950:intron 40.0%
CAGCAGCTGCAATAAAACTA+GGG + chr6_1:9589305-9589324 Msa0873950:CDS 40.0%
! CAGGTGGTTTTTCCTAGTTT+TGG + chr6_1:9589515-9589534 Msa0873950:intron 40.0%
AAGTAACGCTCTCCAAAACT+AGG - chr6_1:9589530-9589549 None:intergenic 40.0%
!!! CACCACTTTTTGAATCCATC+AGG + chr6_1:9589555-9589574 Msa0873950:CDS 40.0%
AGTCATTCTCATTCAAGCTG+TGG + chr6_1:9589636-9589655 Msa0873950:three_prime_UTR 40.0%
GAATGACAACGTTTGGACTT+TGG + chr6_1:9589698-9589717 Msa0873950:three_prime_UTR 40.0%
!! AACGTTTGGACTTTGGAGTT+TGG + chr6_1:9589705-9589724 Msa0873950:three_prime_UTR 40.0%
CCAATCACCGTTAAACGTAA+TGG - chr6_1:9589777-9589796 None:intergenic 40.0%
CCATTACGTTTAACGGTGAT+TGG + chr6_1:9589774-9589793 Msa0873950:three_prime_UTR 40.0%
AAACACAGCCATCCACAACA+TGG - chr6_1:9581501-9581520 None:intergenic 45.0%
CTGTCTTTGACACTAGAGCA+AGG - chr6_1:9581556-9581575 None:intergenic 45.0%
CTTGCTCTAGTGTCAAAGAC+AGG + chr6_1:9581554-9581573 Msa0873950:CDS 45.0%
GATCATTGCAATTGGCATCG+TGG + chr6_1:9581950-9581969 Msa0873950:intron 45.0%
TTCTTTCTTTCCGGGTACGT+AGG + chr6_1:9582066-9582085 Msa0873950:intron 45.0%
CTAACATTTGCCTACGTACC+CGG - chr6_1:9582079-9582098 None:intergenic 45.0%
TCGGATGGATATGGATCTCA+TGG - chr6_1:9582166-9582185 None:intergenic 45.0%
!! GGCAAAATGGATGGATTGGA+TGG - chr6_1:9583077-9583096 None:intergenic 45.0%
ACCAACCAAACTACCTACGT+GGG + chr6_1:9583137-9583156 Msa0873950:intron 45.0%
ATTGCAGATGCTGAGGAGAA+AGG + chr6_1:9583225-9583244 Msa0873950:CDS 45.0%
TTCCACTAGTAGGCTCAATG+AGG - chr6_1:9583530-9583549 None:intergenic 45.0%
AAGACTCATTGAAGCAGGCA+TGG - chr6_1:9583610-9583629 None:intergenic 45.0%
CTCTCAAGACTCATTGAAGC+AGG - chr6_1:9583615-9583634 None:intergenic 45.0%
GTTCTCACAGATCCAGCTAA+AGG + chr6_1:9583669-9583688 Msa0873950:CDS 45.0%
! GATCCAGCTAAAGGCATGAA+AGG + chr6_1:9583678-9583697 Msa0873950:CDS 45.0%
! ACTAACACCTTTGGGTTTGC+AGG - chr6_1:9583774-9583793 None:intergenic 45.0%
AAACTACTGGACCAGAGATC+TGG + chr6_1:9583881-9583900 Msa0873950:CDS 45.0%
! AGATCTGGAAAAGCTCTGGT+GGG + chr6_1:9583896-9583915 Msa0873950:CDS 45.0%
!! GATGCCCTTGTTTCTGGTAT+AGG + chr6_1:9583925-9583944 Msa0873950:CDS 45.0%
CGGTTCCTATACCAGAAACA+AGG - chr6_1:9583933-9583952 None:intergenic 45.0%
AGTATCACCTTCACCATTCG+GGG + chr6_1:9584067-9584086 Msa0873950:intron 45.0%
! TCTTATGAGGGCCTTGTACA+TGG - chr6_1:9584502-9584521 None:intergenic 45.0%
AAGATCCAAGGAATTGGTGC+TGG + chr6_1:9584518-9584537 Msa0873950:intron 45.0%
AAATCGACATCCAGAACACC+AGG - chr6_1:9584551-9584570 None:intergenic 45.0%
!! CATGGGCTGGAGTACATAAT+TGG + chr6_1:9585255-9585274 Msa0873950:intron 45.0%
AGGTAACGCTCTCCAAAGAT+CGG - chr6_1:9585370-9585389 None:intergenic 45.0%
TGAATCCGTAAAGCGAGAAG+CGG + chr6_1:9585405-9585424 Msa0873950:intron 45.0%
TGATTAGGTGAAGTTGGACC+CGG + chr6_1:9586731-9586750 Msa0873950:intron 45.0%
AGGTCTCATTACTCCTGCAA+AGG + chr6_1:9587348-9587367 Msa0873950:CDS 45.0%
GACTGTTCTTGTTGAGGCTA+CGG + chr6_1:9587655-9587674 Msa0873950:intron 45.0%
ACTGTTCTTGTTGAGGCTAC+GGG + chr6_1:9587656-9587675 Msa0873950:intron 45.0%
AGGGTCTGTCAGATATACCT+CGG - chr6_1:9587798-9587817 None:intergenic 45.0%
CAGTGTCTCTCCAAATCTCA+GGG - chr6_1:9588021-9588040 None:intergenic 45.0%
AGATTTGGAGAGACACTGGA+GGG + chr6_1:9588023-9588042 Msa0873950:CDS 45.0%
TGGAGGGAGAATTGATGCTT+TGG + chr6_1:9588039-9588058 Msa0873950:CDS 45.0%
CTATGTAAATTTCCCCCCCT+AGG + chr6_1:9588231-9588250 Msa0873950:intron 45.0%
TTCTACACCATACACCTAGG+GGG - chr6_1:9588248-9588267 None:intergenic 45.0%
GTTCTACACCATACACCTAG+GGG - chr6_1:9588249-9588268 None:intergenic 45.0%
GGTTCTACACCATACACCTA+GGG - chr6_1:9588250-9588269 None:intergenic 45.0%
! TGGTTCTACACCATACACCT+AGG - chr6_1:9588251-9588270 None:intergenic 45.0%
CATCTAGGAGATCAAGATCC+AGG - chr6_1:9588511-9588530 None:intergenic 45.0%
! TGACAAAGCTTTGTCTCACC+AGG + chr6_1:9588746-9588765 Msa0873950:intron 45.0%
GCAGCAGCTGCAATAAAACT+AGG + chr6_1:9589304-9589323 Msa0873950:CDS 45.0%
GGGAAGAGACAAGAAAATGC+AGG + chr6_1:9589325-9589344 Msa0873950:CDS 45.0%
TGCGTCGAATACACACACTA+AGG - chr6_1:9589377-9589396 None:intergenic 45.0%
CAAAATCGTTGTTGTGCAGG+TGG + chr6_1:9589499-9589518 Msa0873950:intron 45.0%
!! CGCCTGATGGATTCAAAAAG+TGG - chr6_1:9589560-9589579 None:intergenic 45.0%
!! ATTTAATATTATTTAATTAC+AGG + chr6_1:9582516-9582535 Msa0873950:intron 5.0%
!! CAAAAATATTATTAATTAAA+TGG - chr6_1:9582733-9582752 None:intergenic 5.0%
!!! AATTTGAAATTTAAAAAATT+AGG + chr6_1:9585635-9585654 Msa0873950:intron 5.0%
!!! ATCTTTTTTTTTTTTTTTTT+TGG - chr6_1:9586569-9586588 None:intergenic 5.0%
! TCATCACTTTGGACTAGGGG+TGG + chr6_1:9582131-9582150 Msa0873950:intron 50.0%
! TTTGGACTAGGGGTGGCAAT+AGG + chr6_1:9582138-9582157 Msa0873950:intron 50.0%
GTGGATGGATCGGATGGATA+TGG - chr6_1:9582175-9582194 None:intergenic 50.0%
GGGTGGCAAAATGGATGGAT+TGG - chr6_1:9583081-9583100 None:intergenic 50.0%
AGTAGGGGTGGCAAAATGGA+TGG - chr6_1:9583086-9583105 None:intergenic 50.0%
CCAAAGTAGGGGTGGCAAAA+TGG - chr6_1:9583090-9583109 None:intergenic 50.0%
! CCATTTTGCCACCCCTACTT+TGG + chr6_1:9583087-9583106 Msa0873950:intron 50.0%
TGTGAAGTCCAAAGTAGGGG+TGG - chr6_1:9583098-9583117 None:intergenic 50.0%
CACCAACCAAACTACCTACG+TGG + chr6_1:9583136-9583155 Msa0873950:intron 50.0%
TCCCACGTAGGTAGTTTGGT+TGG - chr6_1:9583141-9583160 None:intergenic 50.0%
CAAACATTCAGGTCCCACGT+AGG - chr6_1:9583153-9583172 None:intergenic 50.0%
GTCCTCATTGAGCCTACTAG+TGG + chr6_1:9583525-9583544 Msa0873950:CDS 50.0%
GAGCCTACTAGTGGAAACAC+TGG + chr6_1:9583534-9583553 Msa0873950:CDS 50.0%
GCATTCATGGCAGCTGCTAA+GGG + chr6_1:9583567-9583586 Msa0873950:CDS 50.0%
! CTAACTCAGCACCGAAAGCA+CGG - chr6_1:9583650-9583669 None:intergenic 50.0%
GCTCCTTTCATGCCTTTAGC+TGG - chr6_1:9583684-9583703 None:intergenic 50.0%
! CCAGAGCTTTTCCAGATCTC+TGG - chr6_1:9583895-9583914 None:intergenic 50.0%
CCAGAGATCTGGAAAAGCTC+TGG + chr6_1:9583892-9583911 Msa0873950:CDS 50.0%
! GAGATCTGGAAAAGCTCTGG+TGG + chr6_1:9583895-9583914 Msa0873950:CDS 50.0%
!! GTTTCTGGTATAGGAACCGG+AGG + chr6_1:9583934-9583953 Msa0873950:CDS 50.0%
AGCACCTGTTACTGTACCTC+CGG - chr6_1:9583953-9583972 None:intergenic 50.0%
!! AGTAACAGGTGCTGGAAACC+TGG + chr6_1:9583960-9583979 Msa0873950:CDS 50.0%
AATGACTCCCCGAATGGTGA+AGG - chr6_1:9584077-9584096 None:intergenic 50.0%
GACATGAATGACTCCCCGAA+TGG - chr6_1:9584083-9584102 None:intergenic 50.0%
CAAGGCCCTCATAAGATCCA+AGG + chr6_1:9584506-9584525 Msa0873950:intron 50.0%
TGAAGCCAGCACCAATTCCT+TGG - chr6_1:9584526-9584545 None:intergenic 50.0%
!! ATTGGTGCTGGCTTCATTCC+TGG + chr6_1:9584530-9584549 Msa0873950:CDS 50.0%
TGGCTTCATTCCTGGTGTTC+TGG + chr6_1:9584538-9584557 Msa0873950:CDS 50.0%
TACCGATGACCTCGTATTGC+AGG + chr6_1:9585080-9585099 Msa0873950:intron 50.0%
CACCTGCAATACGAGGTCAT+CGG - chr6_1:9585085-9585104 None:intergenic 50.0%
GATGACCTCGTATTGCAGGT+GGG + chr6_1:9585084-9585103 Msa0873950:intron 50.0%
ATGACCTCGTATTGCAGGTG+GGG + chr6_1:9585085-9585104 Msa0873950:intron 50.0%
ATATCCCCACCTGCAATACG+AGG - chr6_1:9585092-9585111 None:intergenic 50.0%
TTGCAGGTGGGGATATCATC+TGG + chr6_1:9585096-9585115 Msa0873950:intron 50.0%
AACCTTAATTGCAGCGGCTG+CGG - chr6_1:9585127-9585146 None:intergenic 50.0%
GCAAAGAAGCCGGAAAATGC+TGG + chr6_1:9585147-9585166 Msa0873950:CDS 50.0%
GGTAACGCTCTCCAAAGATC+GGG - chr6_1:9585369-9585388 None:intergenic 50.0%
ACCAAGGCAAATAGGAGAGC+CGG - chr6_1:9586753-9586772 None:intergenic 50.0%
CCTATCTTTGACACTGCAGC+AGG - chr6_1:9587181-9587200 None:intergenic 50.0%
CCTGCTGCAGTGTCAAAGAT+AGG + chr6_1:9587178-9587197 Msa0873950:intron 50.0%
GATCGATGCCAATCCTATGC+CGG - chr6_1:9587690-9587709 None:intergenic 50.0%
TATCTGACAGACCCTGCCAA+AGG + chr6_1:9587803-9587822 Msa0873950:intron 50.0%
CTCCATCAACTCCTTTGGCA+GGG - chr6_1:9587817-9587836 None:intergenic 50.0%
ACTCCATCAACTCCTTTGGC+AGG - chr6_1:9587818-9587837 None:intergenic 50.0%
CCAGTGTCTCTCCAAATCTC+AGG - chr6_1:9588022-9588041 None:intergenic 50.0%
CCTGAGATTTGGAGAGACAC+TGG + chr6_1:9588019-9588038 Msa0873950:CDS 50.0%
GAGATTTGGAGAGACACTGG+AGG + chr6_1:9588022-9588041 Msa0873950:CDS 50.0%
GATGCTTTGGTTGCAGGGAT+AGG + chr6_1:9588052-9588071 Msa0873950:CDS 50.0%
TTGGTTGCAGGGATAGGAAC+TGG + chr6_1:9588058-9588077 Msa0873950:CDS 50.0%
TGGTTGCAGGGATAGGAACT+GGG + chr6_1:9588059-9588078 Msa0873950:CDS 50.0%
GGAACTGGGGGAACAATAAC+AGG + chr6_1:9588073-9588092 Msa0873950:CDS 50.0%
GGGGAACAATAACAGGTGCT+GGG + chr6_1:9588080-9588099 Msa0873950:CDS 50.0%
AATTTCCCCCCCTAGGTGTA+TGG + chr6_1:9588238-9588257 Msa0873950:intron 50.0%
TCTACACCATACACCTAGGG+GGG - chr6_1:9588247-9588266 None:intergenic 50.0%
CGACACCATTACCGATACCT+TGG - chr6_1:9588478-9588497 None:intergenic 50.0%
AGATCAAGATCCAGGACAGG+GGG - chr6_1:9588503-9588522 None:intergenic 50.0%
GAGATCAAGATCCAGGACAG+GGG - chr6_1:9588504-9588523 None:intergenic 50.0%
GGAGATCAAGATCCAGGACA+GGG - chr6_1:9588505-9588524 None:intergenic 50.0%
AGGAGATCAAGATCCAGGAC+AGG - chr6_1:9588506-9588525 None:intergenic 50.0%
TGGATATGCATCAGGGCCAT+TGG + chr6_1:9589112-9589131 Msa0873950:intron 50.0%
TTCTTCAGCTTCACGCCTGA+TGG - chr6_1:9589573-9589592 None:intergenic 50.0%
! TTACAGGTGGTGGTCAACGC+CGG + chr6_1:9582532-9582551 Msa0873950:intron 55.0%
GGTCAACGCCGGAGTATAAC+CGG + chr6_1:9582543-9582562 Msa0873950:intron 55.0%
!! GGCGTTGACCGGTTATACTC+CGG - chr6_1:9582554-9582573 None:intergenic 55.0%
GGAGTATAACCGGTCAACGC+CGG + chr6_1:9582553-9582572 Msa0873950:intron 55.0%
CAGGTCCCACGTAGGTAGTT+TGG - chr6_1:9583145-9583164 None:intergenic 55.0%
GGCATTCATGGCAGCTGCTA+AGG + chr6_1:9583566-9583585 Msa0873950:CDS 55.0%
! GGAACCGGAGGTACAGTAAC+AGG + chr6_1:9583946-9583965 Msa0873950:CDS 55.0%
! GGAGGTACAGTAACAGGTGC+TGG + chr6_1:9583952-9583971 Msa0873950:CDS 55.0%
TGTGGCGTCACCAAGAAGAG+AGG - chr6_1:9584760-9584779 None:intergenic 55.0%
CGATGACCTCGTATTGCAGG+TGG + chr6_1:9585083-9585102 Msa0873950:intron 55.0%
GCTCTCCGCTTCTCGCTTTA+CGG - chr6_1:9585413-9585432 None:intergenic 55.0%
TGAAGTGGGATGGGAGCCAA+TGG + chr6_1:9585501-9585520 Msa0873950:intron 55.0%
CCAAGGCAAATAGGAGAGCC+GGG - chr6_1:9586752-9586771 None:intergenic 55.0%
GTTCTTGTTGAGGCTACGGG+TGG + chr6_1:9587659-9587678 Msa0873950:intron 55.0%
TGGCAACACCGGCATAGGAT+TGG + chr6_1:9587679-9587698 Msa0873950:intron 55.0%
GACCCTGCCAAAGGAGTTGA+TGG + chr6_1:9587812-9587831 Msa0873950:intron 55.0%
AGACCACTGGCCCTGAGATT+TGG + chr6_1:9588008-9588027 Msa0873950:CDS 55.0%
TCTCCAAATCTCAGGGCCAG+TGG - chr6_1:9588014-9588033 None:intergenic 55.0%
GGTTGCAGGGATAGGAACTG+GGG + chr6_1:9588060-9588079 Msa0873950:CDS 55.0%
GTTGCAGGGATAGGAACTGG+GGG + chr6_1:9588061-9588080 Msa0873950:CDS 55.0%
GGGGGAACAATAACAGGTGC+TGG + chr6_1:9588079-9588098 Msa0873950:CDS 55.0%
!! AGGTGCTGGGAAGTTCCTCA+AGG + chr6_1:9588093-9588112 Msa0873950:CDS 55.0%
CTACACCATACACCTAGGGG+GGG - chr6_1:9588246-9588265 None:intergenic 55.0%
AACCGTCGGTCGCCGGAAAA+TGG + chr6_1:9582612-9582631 Msa0873950:intron 60.0%
! GACCATTTTCCGGCGACCGA+CGG - chr6_1:9582617-9582636 None:intergenic 60.0%
GTCGGTCGCCGGAAAATGGT+CGG + chr6_1:9582616-9582635 Msa0873950:intron 60.0%
AGCAGTCAACACACCACCGC+CGG - chr6_1:9582693-9582712 None:intergenic 60.0%
TGCCGCAGCCGCTGCAATTA+AGG + chr6_1:9585122-9585141 Msa0873950:CDS 60.0%
CCCGGCTCTCCTATTTGCCT+TGG + chr6_1:9586749-9586768 Msa0873950:intron 60.0%
! GCATCGATCGCAGCACTGAG+AGG + chr6_1:9587701-9587720 Msa0873950:intron 60.0%
CGCATCACGGTGGTTCACGG+CGG - chr6_1:9582583-9582602 None:intergenic 65.0%
CGCCGTGAACCACCGTGATG+CGG + chr6_1:9582581-9582600 Msa0873950:intron 65.0%
CGCCGCATCACGGTGGTTCA+CGG - chr6_1:9582586-9582605 None:intergenic 65.0%
CGTGAACCACCGTGATGCGG+CGG + chr6_1:9582584-9582603 Msa0873950:intron 65.0%
! GCGGCGGTCCGACCATTTTC+CGG - chr6_1:9582627-9582646 None:intergenic 65.0%
GAGGCTACGGGTGGCAACAC+CGG + chr6_1:9587668-9587687 Msa0873950:intron 65.0%
ACGGGTGGCAACACCGGCAT+AGG + chr6_1:9587674-9587693 Msa0873950:intron 65.0%
ACTGCGAGCTTTCGGAGCCG+AGG + chr6_1:9587778-9587797 Msa0873950:intron 65.0%
!! TGGTGTCGTTCCCCCTGTCC+TGG + chr6_1:9588490-9588509 Msa0873950:CDS 65.0%
GGTGGTTCACGGCGGAGCTC+CGG - chr6_1:9582575-9582594 None:intergenic 70.0%
GAACCACCGTGATGCGGCGG+CGG + chr6_1:9582587-9582606 Msa0873950:intron 70.0%
GGTTGTCCGCCGCCGCATCA+CGG - chr6_1:9582596-9582615 None:intergenic 70.0%
ATGCGGCGGCGGACAACCGT+CGG + chr6_1:9582598-9582617 Msa0873950:intron 70.0%
! GCGTTGACCACGGTGGCCTC+CGG - chr6_1:9582671-9582690 None:intergenic 70.0%
GAGGCCACCGTGGTCAACGC+CGG + chr6_1:9582671-9582690 Msa0873950:intron 70.0%
!! ACCACCGCCGGCGTTGACCA+CGG - chr6_1:9582681-9582700 None:intergenic 70.0%
!! GGCGGAGCTCCGGCGTTGAC+CGG - chr6_1:9582565-9582584 None:intergenic 75.0%
TGTCCGCCGCCGCATCACGG+TGG - chr6_1:9582593-9582612 None:intergenic 75.0%
GGCGGACAACCGTCGGTCGC+CGG + chr6_1:9582605-9582624 Msa0873950:intron 75.0%
GCCACCGTGGTCAACGCCGG+CGG + chr6_1:9582674-9582693 Msa0873950:intron 75.0%
!! ACCGCCGGCGTTGACCACGG+TGG - chr6_1:9582678-9582697 None:intergenic 75.0%
ACCGTGGTCAACGCCGGCGG+TGG + chr6_1:9582677-9582696 Msa0873950:intron 75.0%
! GTGGCCTCCGGCGACCCCCA+CGG - chr6_1:9582659-9582678 None:intergenic 80.0%
! ACCCCCACGGCGGCGCACGG+CGG - chr6_1:9582646-9582665 None:intergenic 85.0%
! GCGACCCCCACGGCGGCGCA+CGG - chr6_1:9582649-9582668 None:intergenic 85.0%
! TGCGCCGCCGTGGGGGTCGC+CGG + chr6_1:9582649-9582668 Msa0873950:intron 85.0%
! GCCTCCGGCGACCCCCACGG+CGG - chr6_1:9582656-9582675 None:intergenic 85.0%
! GGGGTCGCCGGAGGCCACCG+TGG + chr6_1:9582661-9582680 Msa0873950:intron 85.0%
! ACCGCCGCCGTGCGCCGCCG+TGG + chr6_1:9582639-9582658 Msa0873950:intron 90.0%
! CCCACGGCGGCGCACGGCGG+CGG - chr6_1:9582643-9582662 None:intergenic 90.0%
! CCGCCGCCGTGCGCCGCCGT+GGG + chr6_1:9582640-9582659 Msa0873950:intron 90.0%
! CGCCGCCGTGCGCCGCCGTG+GGG + chr6_1:9582641-9582660 Msa0873950:intron 90.0%
! GCCGCCGTGCGCCGCCGTGG+GGG + chr6_1:9582642-9582661 Msa0873950:intron 90.0%
! GCCGCCGTGGGGGTCGCCGG+AGG + chr6_1:9582652-9582671 Msa0873950:intron 90.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 9581466 9589950 9581466 ID=Msa0873950;Name=Msa0873950
chr6_1 mRNA 9581466 9589950 9581466 ID=Msa0873950-mRNA-1;Parent=Msa0873950;Name=Msa0873950-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.64|0.66|1|0.71|0.73|15|322|462
chr6_1 exon 9581466 9581575 9581466 ID=Msa0873950-mRNA-1:exon:2935;Parent=Msa0873950-mRNA-1
chr6_1 exon 9583206 9583266 9583206 ID=Msa0873950-mRNA-1:exon:2936;Parent=Msa0873950-mRNA-1
chr6_1 exon 9583522 9583785 9583522 ID=Msa0873950-mRNA-1:exon:2937;Parent=Msa0873950-mRNA-1
chr6_1 exon 9583871 9583981 9583871 ID=Msa0873950-mRNA-1:exon:2938;Parent=Msa0873950-mRNA-1
chr6_1 exon 9584521 9584589 9584521 ID=Msa0873950-mRNA-1:exon:2939;Parent=Msa0873950-mRNA-1
chr6_1 exon 9584958 9585017 9584958 ID=Msa0873950-mRNA-1:exon:2940;Parent=Msa0873950-mRNA-1
chr6_1 exon 9585102 9585190 9585102 ID=Msa0873950-mRNA-1:exon:2941;Parent=Msa0873950-mRNA-1
chr6_1 exon 9586878 9586935 9586878 ID=Msa0873950-mRNA-1:exon:2942;Parent=Msa0873950-mRNA-1
chr6_1 exon 9587090 9587136 9587090 ID=Msa0873950-mRNA-1:exon:2943;Parent=Msa0873950-mRNA-1
chr6_1 exon 9587312 9587369 9587312 ID=Msa0873950-mRNA-1:exon:2944;Parent=Msa0873950-mRNA-1
chr6_1 exon 9587998 9588135 9587998 ID=Msa0873950-mRNA-1:exon:2945;Parent=Msa0873950-mRNA-1
chr6_1 exon 9588253 9588304 9588253 ID=Msa0873950-mRNA-1:exon:2946;Parent=Msa0873950-mRNA-1
chr6_1 exon 9588462 9588541 9588462 ID=Msa0873950-mRNA-1:exon:2947;Parent=Msa0873950-mRNA-1
chr6_1 exon 9589280 9589360 9589280 ID=Msa0873950-mRNA-1:exon:2948;Parent=Msa0873950-mRNA-1
chr6_1 exon 9589518 9589950 9589518 ID=Msa0873950-mRNA-1:exon:2949;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9581466 9581575 9581466 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9583206 9583266 9583206 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9583522 9583785 9583522 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9583871 9583981 9583871 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9584521 9584589 9584521 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9584958 9585017 9584958 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9585102 9585190 9585102 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9586878 9586935 9586878 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9587090 9587136 9587090 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9587312 9587369 9587312 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9587998 9588135 9587998 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9588253 9588304 9588253 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9588462 9588541 9588462 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9589280 9589360 9589280 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 CDS 9589518 9589628 9589518 ID=Msa0873950-mRNA-1:cds;Parent=Msa0873950-mRNA-1
chr6_1 three_prime_UTR 9589629 9589950 9589629 ID=Msa0873950-mRNA-1:three_prime_utr;Parent=Msa0873950-mRNA-1
Gene Sequence

>Msa0873950

TTGATTGGTAAAACTCCACTAGTATATCTCAACCATGTTGTGGATGGCTGTGTTTCCCAAATTGCTGCAAAGCTAGAAATGATGGAACCTTGCTCTAGTGTCAAAGACAGGATAGGATATAGCATGATTATTGCAGATGCTGAGGAGAAAGGACTCATTAGACCCCAAGAAAGTGTCCTCATTGAGCCTACTAGTGGAAACACTGGTATTGGTTTGGCATTCATGGCAGCTGCTAAGGGATATAAACTTATCATAACCATGCCTGCTTCAATGAGTCTTGAGAGAAGAACTATTCTCCGTGCTTTCGGTGCTGAGTTAGTTCTCACAGATCCAGCTAAAGGCATGAAAGGAGCTGTTCAGCAAGCTGAAGAGATACTAGCAAAGACTCCCAATGCTTACATTCTTCAGCAATTTGAAAATCCTGCAAACCCAAAGGTTCACTGTGAAACTACTGGACCAGAGATCTGGAAAAGCTCTGGTGGGAAAGTTGATGCCCTTGTTTCTGGTATAGGAACCGGAGGTACAGTAACAGGTGCTGGAAACCTGATCCAAGGAATTGGTGCTGGCTTCATTCCTGGTGTTCTGGATGTCGATTTGCTTGATGAAGTAATCCAAATATCCAGCGAAGAAGCTATTGAAACTGCTAAACTTCTTGCATTAAAAGAAGGTTTGCTGGTGGGGATATCATCTGGTGCTGCCGCAGCCGCTGCAATTAAGGTTGCAAAGAAGCCGGAAAATGCTGGAAAACTCATTGTTGTAAGTTTCCTTTCTTCATCAGATAACATGGAGCAACACTTTGCAATTAAGAAGGATGTCACTCAATTAATAGGGAACACACCATTGGTATATCTTAACAACATTACAGAAGGGATAGCATTGAGCATGATTGAAGATGCCGAAAATAAAGGTCTCATTACTCCTGCAAAGACTCATTATGAGACCACTGGCCCTGAGATTTGGAGAGACACTGGAGGGAGAATTGATGCTTTGGTTGCAGGGATAGGAACTGGGGGAACAATAACAGGTGCTGGGAAGTTCCTCAAGGAGAGAAACTTAGATATGAAGGTGTATGGTGTAGAACCAACTGAAAGTGCAATTTTGAATGGAGGAAAGCCAGGCCAACATCTAATCCAAGGTATCGGTAATGGTGTCGTTCCCCCTGTCCTGGATCTTGATCTCCTAGATGAAGTTATTCAGATGGGAATTTCATCAGGAGCTGCAGCAGCAGCTGCAATAAAACTAGGGAAGAGACAAGAAAATGCAGGAAAGCTCATTGTTGTGGTTTTTCCTAGTTTTGGAGAGCGTTACTTATCTTCACCACTTTTTGAATCCATCAGGCGTGAAGCTGAAGAAATGACATTTGACTGTCTGAAGTGCATGAATAGCTAA

Protein sequence

>Msa0873950

LIGKTPLVYLNHVVDGCVSQIAAKLEMMEPCSSVKDRIGYSMIIADAEEKGLIRPQESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRTILRAFGAELVLTDPAKGMKGAVQQAEEILAKTPNAYILQQFENPANPKVHCETTGPEIWKSSGGKVDALVSGIGTGGTVTGAGNLIQGIGAGFIPGVLDVDLLDEVIQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKVAKKPENAGKLIVVSFLSSSDNMEQHFAIKKDVTQLIGNTPLVYLNNITEGIALSMIEDAENKGLITPAKTHYETTGPEIWRDTGGRIDALVAGIGTGGTITGAGKFLKERNLDMKVYGVEPTESAILNGGKPGQHLIQGIGNGVVPPVLDLDLLDEVIQMGISSGAAAAAAIKLGKRQENAGKLIVVVFPSFGERYLSSPLFESIRREAEEMTFDCLKCMNS*