AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606340 MtrunA17_Chr4g0035951 99.000 400 4 0 1 400 1 400 0.0 812
Msa0606340 MtrunA17_Chr4g0028361 98.750 400 5 0 1 400 1 400 0.0 811
Msa0606340 MtrunA17_Chr1g0208981 82.535 355 61 1 46 400 38 391 0.0 612
Msa0606340 MtrunA17_Chr4g0035981 95.359 237 11 0 164 400 4 240 3.29e-168 470
Msa0606340 MtrunA17_Chr5g0429051 56.818 352 147 4 53 400 8 358 2.23e-135 391
Msa0606340 MtrunA17_Chr7g0265821 56.534 352 148 4 53 400 8 358 3.76e-135 391
Msa0606340 MtrunA17_Chr5g0447091 56.374 353 150 3 51 400 6 357 2.42e-133 386
Msa0606340 MtrunA17_Chr1g0179211 54.830 352 154 4 53 400 8 358 6.04e-129 375
Msa0606340 MtrunA17_Chr4g0035971 90.000 140 12 2 1 140 1 138 2.51e-81 245
Msa0606340 MtrunA17_Chr5g0429031 57.619 210 88 1 45 253 41 250 3.24e-78 242
Msa0606340 MtrunA17_Chr5g0429021 53.030 132 58 3 272 400 1 131 3.98e-37 131
Msa0606340 MtrunA17_Chr7g0265811 46.809 94 26 1 157 250 21 90 3.15e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606340 AT2G21330.1 83.333 402 62 4 1 400 1 399 0.0 688
Msa0606340 AT4G38970.1 83.709 399 61 3 4 400 2 398 0.0 681
Msa0606340 AT2G21330.3 80.846 402 62 5 1 400 1 389 0.0 659
Msa0606340 AT2G01140.1 75.063 397 92 2 4 400 2 391 0.0 611
Msa0606340 AT2G21330.2 82.903 310 48 4 1 308 1 307 0.0 523
Msa0606340 AT4G38970.2 79.630 324 55 4 4 318 2 323 0.0 518
Msa0606340 AT4G26530.1 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0606340 AT4G26530.3 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0606340 AT4G26530.2 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0606340 AT2G36460.1 56.818 352 147 4 53 400 8 358 6.59e-135 390
Msa0606340 AT3G52930.1 55.682 352 151 4 53 400 8 358 4.88e-132 383
Msa0606340 AT5G03690.2 55.398 352 153 3 53 400 8 359 2.44e-129 376
Msa0606340 AT5G03690.1 51.000 400 182 5 7 400 2 393 1.04e-128 376
Msa0606340 AT4G26520.1 55.398 352 152 4 53 400 8 358 7.42e-127 370
Msa0606340 AT4G26520.3 55.556 351 151 4 53 399 8 357 1.47e-126 369
Msa0606340 AT4G26520.2 55.271 351 152 4 54 400 6 355 3.12e-126 368
Msa0606340 AT4G26520.4 55.271 351 152 4 54 400 6 355 3.12e-126 368
Msa0606340 AT2G36460.3 56.343 268 112 4 137 400 1 267 9.25e-99 295
Msa0606340 AT2G36460.2 56.343 268 112 4 137 400 1 267 9.25e-99 295
Msa0606340 AT5G03690.3 54.307 267 118 3 138 400 1 267 1.96e-91 276
Msa0606340 AT5G03690.4 54.307 267 118 3 138 400 1 267 1.96e-91 276

Find 152 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCCGGGCGTGGTATTT+TGG 0.165856 4_2:+52554857 Msa0606340:CDS
ACACCCAAATGTTTAAAATT+TGG 0.199558 4_2:+52556863 Msa0606340:three_prime_UTR
AACCTAAGGAAAATAATATT+AGG 0.245002 4_2:-52553578 None:intergenic
ATGTCTTCAATGCGGTATTT+TGG 0.245388 4_2:-52556450 None:intergenic
TTTGACGAACAATTCCTTCT+TGG 0.278555 4_2:-52556587 None:intergenic
GGAACACAACTTCGAGTAAA+TGG 0.310830 4_2:-52556929 None:intergenic
GGCTGTCAAGGAAGCAGCCT+GGG 0.313883 4_2:+52555679 Msa0606340:CDS
GGGAAGCGTTTGGCTTCAAT+TGG 0.326689 4_2:+52554906 Msa0606340:CDS
GATGATAATTCATGCTTGTT+TGG 0.327277 4_2:-52553653 None:intergenic
TTGAAGTAGCACAAAAGGTT+TGG 0.329064 4_2:+52556041 Msa0606340:CDS
GTCCACGAAACCCAATTAAA+AGG 0.336300 4_2:+52556888 Msa0606340:three_prime_UTR
TTGTCCTTGCACTCAGCTCC+TGG 0.340552 4_2:-52556139 None:intergenic
CGTGCCATGGGTTTGGAGAT+TGG 0.341879 4_2:-52556402 None:intergenic
ACCATGATACCAGGGACAGC+TGG 0.345678 4_2:-52556220 None:intergenic
CAAGGAAGCAGCCTGGGGTT+TGG 0.347325 4_2:+52555685 Msa0606340:CDS
CTCTACCAATCTACAGTTGA+TGG 0.350484 4_2:+52555032 Msa0606340:CDS
AAGATCTCTGGTTCCACAAT+TGG 0.357070 4_2:-52555986 None:intergenic
ATCGAGCAAAACATTGTTCC+TGG 0.364320 4_2:+52555077 Msa0606340:CDS
GCCAGAGCAGAGGGACCGTT+TGG 0.371025 4_2:-52555659 None:intergenic
TGAGGAGAATGCCCTCAAAT+TGG 0.371449 4_2:-52556099 None:intergenic
TGAATCATGGTGCCAAGGTC+TGG 0.375096 4_2:+52555450 Msa0606340:CDS
TGAAGTAGCACAAAAGGTTT+GGG 0.375792 4_2:+52556042 Msa0606340:CDS
CATTACGTGGTTGAAATCAT+TGG 0.376955 4_2:-52553610 None:intergenic
CTCTGGTGCCATTCTCTTTG+AGG 0.388489 4_2:+52555004 Msa0606340:CDS
AACGACACGTGCCATGGGTT+TGG 0.390092 4_2:-52556409 None:intergenic
CCCAAACGGTCCCTCTGCTC+TGG 0.391022 4_2:+52555658 Msa0606340:CDS
CCCAGCTGTCCCTGGTATCA+TGG 0.393404 4_2:+52556219 Msa0606340:CDS
ACCTAAGGAAAATAATATTA+GGG 0.396861 4_2:-52553577 None:intergenic
TGGGTTTGGAGATTGGTTCA+TGG 0.399088 4_2:-52556395 None:intergenic
TGGCTGTCAAGGAAGCAGCC+TGG 0.407019 4_2:+52555678 Msa0606340:CDS
CAATTCCTTCTTGGCTTCCT+CGG 0.408353 4_2:-52556578 None:intergenic
CCATGCTTGGCGGTTAGCTT+CGG 0.415377 4_2:-52554940 None:intergenic
TGCTACATGTGGGAAGCGTT+TGG 0.419407 4_2:+52554896 Msa0606340:CDS
CTTGTGACAGTTCCATCACT+TGG 0.443187 4_2:+52554972 Msa0606340:CDS
TCCTTCCATCAACTGTAGAT+TGG 0.444723 4_2:-52555037 None:intergenic
TAGGGTCTGGTGCCCCTAGC+TGG 0.446675 4_2:+52555418 Msa0606340:intron
GGCGTATGAACCAGCTCTAA+TGG 0.449196 4_2:-52553988 None:intergenic
AGCACAAAAGGTTTGGGCTG+AGG 0.454604 4_2:+52556048 Msa0606340:CDS
GTCAAGTGATGTCTCATTTG+CGG 0.454726 4_2:-52553711 None:intergenic
AAGGTGCTCGTTTCGCCAAA+TGG 0.465409 4_2:+52555509 Msa0606340:CDS
TTGAGCAATTGAGTTGGACT+TGG 0.467054 4_2:-52556527 None:intergenic
TTGTTCTTGACAAGTCTGAA+TGG 0.468236 4_2:+52553886 Msa0606340:CDS
GAACCAGAGATCTTGCTTGA+TGG 0.472497 4_2:+52555995 Msa0606340:CDS
GTTCATGGCATTCAAGTTGA+GGG 0.472908 4_2:-52556380 None:intergenic
TGAGAACAATGTCCAATTTG+AGG 0.474283 4_2:+52556087 Msa0606340:CDS
TCCAACTCAATTGCTCAACT+TGG 0.475986 4_2:+52556532 Msa0606340:CDS
AGATCTCTGGTTCCACAATT+GGG 0.476937 4_2:-52555985 None:intergenic
TGGCGAAACGAGCACCTTGT+TGG 0.482452 4_2:-52555504 None:intergenic
CATGGCCAAAATACCACGCC+CGG 0.484879 4_2:-52554862 None:intergenic
CCAGAGCAGAGGGACCGTTT+GGG 0.485801 4_2:-52555658 None:intergenic
ACCTTGTCAACTTTGATACC+AGG 0.493112 4_2:-52555095 None:intergenic
TCGCTATGCTGCAATTAGTC+AGG 0.494622 4_2:+52555709 Msa0606340:CDS
TGCAACCCTACTGCTCCATC+AGG 0.494718 4_2:+52553960 Msa0606340:CDS
TCCACATGTCAAGTGAAGAT+AGG 0.497175 4_2:+52553674 Msa0606340:five_prime_UTR
CAAGAAGGGTACGCCATGCT+TGG 0.498533 4_2:-52554953 None:intergenic
GGAAGCGTTTGGCTTCAATT+GGG 0.502252 4_2:+52554907 Msa0606340:CDS
CAATGATTTCAACCACGTAA+TGG 0.508557 4_2:+52553611 Msa0606340:five_prime_UTR
CAGAAAACAATTGCTTCACC+CGG 0.510404 4_2:+52554843 Msa0606340:intron
AGTGTAAGAACTAAGAACTA+TGG 0.510513 4_2:+52553830 Msa0606340:intron
ATTCATCGTTGGAACCAGCT+AGG 0.510943 4_2:-52555432 None:intergenic
TCCCTCTGCTCTGGCTGTCA+AGG 0.511447 4_2:+52555667 Msa0606340:CDS
TCACTTGGAGAGTATATCTC+TGG 0.513608 4_2:+52554987 Msa0606340:CDS
TGTTCTTGACAAGTCTGAAT+GGG 0.513891 4_2:+52553887 Msa0606340:CDS
GAGAACAATGTCCAATTTGA+GGG 0.514083 4_2:+52556088 Msa0606340:CDS
TTCATCGTTGGAACCAGCTA+GGG 0.515096 4_2:-52555431 None:intergenic
GCTCTAATGGTAAGACCTGA+TGG 0.519825 4_2:-52553975 None:intergenic
TTCTCCTGTGAAGGAGCTTG+AGG 0.524713 4_2:-52556192 None:intergenic
AGGCAAGACCGTCCAGACCT+TGG 0.525040 4_2:-52555462 None:intergenic
GGTTCATGGCATTCAAGTTG+AGG 0.530771 4_2:-52556381 None:intergenic
CAACGGATTGGTCCCAATTG+TGG 0.534112 4_2:+52555973 Msa0606340:CDS
GTATAGTCAGCAACTGTGGC+AGG 0.534125 4_2:-52556169 None:intergenic
TATGAGAACGACACGTGCCA+TGG 0.534333 4_2:-52556415 None:intergenic
ATACCCTCAAGCTCCTTCAC+AGG 0.534468 4_2:+52556188 Msa0606340:CDS
TCAGGTCTTACCATTAGAGC+TGG 0.535329 4_2:+52553978 Msa0606340:CDS
GTAAGACCTGATGGAGCAGT+AGG 0.536429 4_2:-52553966 None:intergenic
GCAGTTAATGATGGTGTTGA+CGG 0.536739 4_2:+52556676 Msa0606340:three_prime_UTR
AGCATAGCGAGCCAAACCCC+AGG 0.539660 4_2:-52555696 None:intergenic
TCTCCATCAAGCAAGATCTC+TGG 0.540606 4_2:-52555998 None:intergenic
TCTCCTGTGAAGGAGCTTGA+GGG 0.542263 4_2:-52556191 None:intergenic
CCATGATACCAGGGACAGCT+GGG 0.545501 4_2:-52556219 None:intergenic
AAAATACCGCATTGAAGACA+TGG 0.548809 4_2:+52556452 Msa0606340:CDS
GAGAGTTTCCTCAAAGAGAA+TGG 0.549338 4_2:-52555012 None:intergenic
AAGCCTAGCATGGTTACTCC+AGG 0.551395 4_2:+52556121 Msa0606340:CDS
AGAAGAAGGTTGACGTAGGA+GGG 0.553419 4_2:-52553922 None:intergenic
GCTCCTGGAGTAACCATGCT+AGG 0.553694 4_2:-52556124 None:intergenic
GAAGGGTACGCCATGCTTGG+CGG 0.555457 4_2:-52554950 None:intergenic
GTCAGCAACTGTGGCAGGAG+AGG 0.555780 4_2:-52556164 None:intergenic
TCCTTGACAGCCAGAGCAGA+GGG 0.557055 4_2:-52555668 None:intergenic
CGCGGTCTTGACGAGCTCAT+CGG 0.558858 4_2:-52554009 None:intergenic
TCCAAGTTGAGCAATTGAGT+TGG 0.559400 4_2:-52556533 None:intergenic
CTGGTTCCAACGATGAATCA+TGG 0.559760 4_2:+52555437 Msa0606340:CDS
TAGAAGAAGGTTGACGTAGG+AGG 0.563073 4_2:-52553923 None:intergenic
ACGCTTCCCACATGTAGCAT+TGG 0.563790 4_2:-52554892 None:intergenic
TGAATCCGAGGAAGCCAAGA+AGG 0.564271 4_2:+52556573 Msa0606340:CDS
ACCTATCTTCACTTGACATG+TGG 0.564740 4_2:-52553675 None:intergenic
ACAATTGCTTCACCCGGGCG+TGG 0.565967 4_2:+52554849 Msa0606340:CDS
ATCTTGCTTGATGGAGAACA+TGG 0.567139 4_2:+52556004 Msa0606340:CDS
TACTCCAGGAGCTGAGTGCA+AGG 0.568532 4_2:+52556135 Msa0606340:CDS
GTGATGGAACTGTCACAAGA+AGG 0.571260 4_2:-52554968 None:intergenic
AAGAAGGAATTGTTCGTCAA+AGG 0.571329 4_2:+52556589 Msa0606340:CDS
GGTTTATTAGGACAACGGAT+TGG 0.572758 4_2:+52555961 Msa0606340:intron
CTAACAACAGACATAGAAGA+AGG 0.574063 4_2:-52553936 None:intergenic
TGTAGCATTGGACTCATCCA+TGG 0.576571 4_2:-52554880 None:intergenic
AGGAGCTGAGTGCAAGGACA+AGG 0.577780 4_2:+52556141 Msa0606340:CDS
GTGTCACATACCATGATACC+AGG 0.579988 4_2:-52556229 None:intergenic
TGACAAGTCTGAATGGGTGA+AGG 0.580261 4_2:+52553893 Msa0606340:CDS
GAGATATACTCTCCAAGTGA+TGG 0.582405 4_2:-52554984 None:intergenic
CCGAAGCTAACCGCCAAGCA+TGG 0.583140 4_2:+52554940 Msa0606340:CDS
TTGGCACCATGATTCATCGT+TGG 0.586333 4_2:-52555443 None:intergenic
CACTGGTGAGGGTGAATCCG+AGG 0.587935 4_2:+52556561 Msa0606340:CDS
AACGATGAATCATGGTGCCA+AGG 0.589365 4_2:+52555445 Msa0606340:CDS
CATTCTCCTCAAGCCTAGCA+TGG 0.591042 4_2:+52556111 Msa0606340:CDS
GACAAGTCTGAATGGGTGAA+GGG 0.591129 4_2:+52553894 Msa0606340:CDS
GCAGCACTAGCAGTTAATGA+TGG 0.594980 4_2:+52556667 Msa0606340:three_prime_UTR
ATGAGAACGACACGTGCCAT+GGG 0.596886 4_2:-52556414 None:intergenic
GCTGTCAAGGAAGCAGCCTG+GGG 0.597669 4_2:+52555680 Msa0606340:CDS
TCCTGGTATCAAAGTTGACA+AGG 0.599517 4_2:+52555094 Msa0606340:CDS
ATTGGACATTGTTCTCAGCA+AGG 0.604841 4_2:-52556081 None:intergenic
ACCAATCTACAGTTGATGGA+AGG 0.606822 4_2:+52555036 Msa0606340:CDS
TCATGGTGCCAAGGTCTGGA+CGG 0.610100 4_2:+52555454 Msa0606340:CDS
TGATGGAACTGTCACAAGAA+GGG 0.610460 4_2:-52554967 None:intergenic
TTAATGGTTTATTAGGACAA+CGG 0.610985 4_2:+52555956 Msa0606340:intron
GAGTAACCATGCTAGGCTTG+AGG 0.616311 4_2:-52556117 None:intergenic
CTTGGAAAGTACACTGGTGA+GGG 0.616339 4_2:+52556550 Msa0606340:CDS
CAATTGAGTTGGACTTGGCG+CGG 0.616785 4_2:-52556522 None:intergenic
TTCCTTGACAGCCAGAGCAG+AGG 0.621508 4_2:-52555669 None:intergenic
ACAGTTGTGAGCATCCCAAA+CGG 0.623689 4_2:+52555644 Msa0606340:CDS
AAATACCGCATTGAAGACAT+GGG 0.626712 4_2:+52556453 Msa0606340:CDS
ACTTGGAAAGTACACTGGTG+AGG 0.631708 4_2:+52556549 Msa0606340:CDS
ATGGCCAAAATACCACGCCC+GGG 0.644348 4_2:-52554861 None:intergenic
ACCGCATTGAAGACATGGGG+AGG 0.644971 4_2:+52556457 Msa0606340:CDS
TAAGACCTGATGGAGCAGTA+GGG 0.647498 4_2:-52553965 None:intergenic
TGAACCAATCTCCAAACCCA+TGG 0.649676 4_2:+52556398 Msa0606340:CDS
GAGGGTATAGTCAGCAACTG+TGG 0.652280 4_2:-52556173 None:intergenic
GTAGTATGCAGCTGAACGAG+AGG 0.655895 4_2:-52555482 None:intergenic
GCTCAACTTGGAAAGTACAC+TGG 0.658104 4_2:+52556544 Msa0606340:CDS
CATGATACCAGGGACAGCTG+GGG 0.665632 4_2:-52556218 None:intergenic
GATGAGTCCAATGCTACATG+TGG 0.669307 4_2:+52554885 Msa0606340:CDS
AGGCCGCGCAGAGAACGTGA+AGG 0.669516 4_2:+52556477 Msa0606340:CDS
ATGATACCAGGGACAGCTGG+GGG 0.672628 4_2:-52556217 None:intergenic
AGAAAACAATTGCTTCACCC+GGG 0.673634 4_2:+52554844 Msa0606340:intron
TCATCGTTGGAACCAGCTAG+GGG 0.675575 4_2:-52555430 None:intergenic
CAATATGCATCACCATTACG+TGG 0.680363 4_2:-52553623 None:intergenic
ACATAGAAGAAGGTTGACGT+AGG 0.687898 4_2:-52553926 None:intergenic
CTGCCTTCACGTTCTCTGCG+CGG 0.701188 4_2:-52556480 None:intergenic
GCCTCCCCATGTCTTCAATG+CGG 0.705321 4_2:-52556458 None:intergenic
CGATGAGCTCGTCAAGACCG+CGG 0.707845 4_2:+52554010 Msa0606340:CDS
TCAGCTGCATACTACCAACA+AGG 0.710256 4_2:+52555490 Msa0606340:CDS
GTTAATGATGGTGTTGACGG+AGG 0.728084 4_2:+52556679 Msa0606340:three_prime_UTR
TGTCACATACCATGATACCA+GGG 0.730745 4_2:-52556228 None:intergenic
AATACCGCATTGAAGACATG+GGG 0.731314 4_2:+52556454 Msa0606340:CDS
ATGAGTCCAATGCTACATGT+GGG 0.746520 4_2:+52554886 Msa0606340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCATAATAATATACAT+CGG - chr4_2:52555215-52555234 None:intergenic 10.0%
!!! TTTTGATTTTTTTTTTTTTG+TGG + chr4_2:52556767-52556786 Msa0606340:three_prime_UTR 10.0%
!! ATTGTTAGTATTATTATGTT+AGG + chr4_2:52554081-52554100 Msa0606340:intron 15.0%
!! ACCTAAGGAAAATAATATTA+GGG - chr4_2:52553580-52553599 None:intergenic 20.0%
!! AACCTAAGGAAAATAATATT+AGG - chr4_2:52553581-52553600 None:intergenic 20.0%
!!! ACATTTTCTTGTATAAACAA+TGG + chr4_2:52554308-52554327 Msa0606340:intron 20.0%
!!! GTAAAAGTATAAGATACTTT+TGG + chr4_2:52554340-52554359 Msa0606340:intron 20.0%
!!! ATAAGCTATTTTTATAGCAA+AGG + chr4_2:52554426-52554445 Msa0606340:intron 20.0%
!!! TGCAATATTTTATGTTTCAT+TGG + chr4_2:52554778-52554797 Msa0606340:intron 20.0%
!!! AATTTCATTTTAGTAACAAC+AGG - chr4_2:52555140-52555159 None:intergenic 20.0%
!! TTCATATTATTGTTTATGTC+AGG - chr4_2:52555325-52555344 None:intergenic 20.0%
!! ACAAATTTCAATTGCATATT+AGG + chr4_2:52555618-52555637 Msa0606340:intron 20.0%
!! AATCACTTATACAATTTGAA+TGG - chr4_2:52555743-52555762 None:intergenic 20.0%
!! AAAGAATAATGTTACGTATT+TGG - chr4_2:52556258-52556277 None:intergenic 20.0%
!!! TGTGTAATATTTTATAGTCT+TGG + chr4_2:52556737-52556756 Msa0606340:three_prime_UTR 20.0%
!!! ATATTTTATTGAAGTCGTAA+AGG - chr4_2:52556807-52556826 None:intergenic 20.0%
!!! TTATATCTCTCCTTTTAATT+GGG - chr4_2:52556901-52556920 None:intergenic 20.0%
!!! TTTATATCTCTCCTTTTAAT+TGG - chr4_2:52556902-52556921 None:intergenic 20.0%
!! TCCCTAATATTATTTTCCTT+AGG + chr4_2:52553576-52553595 Msa0606340:five_prime_UTR 25.0%
!!! ATTGGTTTTTTTCTAACCTA+AGG - chr4_2:52553595-52553614 None:intergenic 25.0%
! TCCAAGATAGCTTATAAAAA+CGG - chr4_2:52554491-52554510 None:intergenic 25.0%
! AATTGATGAAAAGAATAAGC+AGG + chr4_2:52555181-52555200 Msa0606340:intron 25.0%
! TCTAATAGAGTGATATCATT+TGG + chr4_2:52555255-52555274 Msa0606340:intron 25.0%
! TTTATGTGTCATGAACAATA+GGG + chr4_2:52555400-52555419 Msa0606340:intron 25.0%
! ATATGCAATTGAAATTTGTG+TGG - chr4_2:52555617-52555636 None:intergenic 25.0%
! GTCAAATACAATTTGTACAT+AGG - chr4_2:52555867-52555886 None:intergenic 25.0%
! TATTTGACTAGAATGTTCTT+TGG + chr4_2:52555879-52555898 Msa0606340:intron 25.0%
! GCTAAAATATGTCCATTTAA+TGG + chr4_2:52555940-52555959 Msa0606340:intron 25.0%
! TGTCCATTTAATGGTTTATT+AGG + chr4_2:52555949-52555968 Msa0606340:intron 25.0%
! TGTCCTAATAAACCATTAAA+TGG - chr4_2:52555955-52555974 None:intergenic 25.0%
! TTAATGGTTTATTAGGACAA+CGG + chr4_2:52555956-52555975 Msa0606340:intron 25.0%
!! ACACCCAAATGTTTAAAATT+TGG + chr4_2:52556863-52556882 Msa0606340:three_prime_UTR 25.0%
!! CTGCCAAATTTTAAACATTT+GGG - chr4_2:52556869-52556888 None:intergenic 25.0%
!! ACTGCCAAATTTTAAACATT+TGG - chr4_2:52556870-52556889 None:intergenic 25.0%
GATGATAATTCATGCTTGTT+TGG - chr4_2:52553656-52553675 None:intergenic 30.0%
!! AAGCAGTTAATGTTTTTGTG+TGG + chr4_2:52553751-52553770 Msa0606340:five_prime_UTR 30.0%
AGTGTAAGAACTAAGAACTA+TGG + chr4_2:52553830-52553849 Msa0606340:intron 30.0%
!!! ATGAGATGCTTCTAGTTTTA+AGG - chr4_2:52554168-52554187 None:intergenic 30.0%
GACAATCAAATTGATACATG+TGG + chr4_2:52554270-52554289 Msa0606340:intron 30.0%
CAAGAAAATGTTCTTACAAC+TGG - chr4_2:52554299-52554318 None:intergenic 30.0%
!! TCCGTTTTTATAAGCTATCT+TGG + chr4_2:52554487-52554506 Msa0606340:intron 30.0%
TAAAGTGATGTGACATAGAA+TGG + chr4_2:52554693-52554712 Msa0606340:intron 30.0%
ACATGACAGATCTTTATGTA+TGG - chr4_2:52555299-52555318 None:intergenic 30.0%
GTTTATGTGTCATGAACAAT+AGG + chr4_2:52555399-52555418 Msa0606340:intron 30.0%
! ATTCTGATTTTGCTTCCATA+GGG - chr4_2:52555557-52555576 None:intergenic 30.0%
! AATTCTGATTTTGCTTCCAT+AGG - chr4_2:52555558-52555577 None:intergenic 30.0%
!!! AGATTTTTTTGTCTTAGCAG+CGG + chr4_2:52555835-52555854 Msa0606340:intron 30.0%
! ATGAGTGTGATTTAAAACCT+TGG + chr4_2:52555918-52555937 Msa0606340:intron 30.0%
!!! AAATGGACATATTTTAGCCA+AGG - chr4_2:52555938-52555957 None:intergenic 30.0%
!!! AACTTTTGAAGTAGCACAAA+AGG + chr4_2:52556036-52556055 Msa0606340:CDS 30.0%
TTGCTTACTAAAGCTGTATT+TGG + chr4_2:52556313-52556332 Msa0606340:intron 30.0%
! GCTATGTATAGTTTTTGTCT+GGG + chr4_2:52556335-52556354 Msa0606340:intron 30.0%
! CTATGTATAGTTTTTGTCTG+GGG + chr4_2:52556336-52556355 Msa0606340:intron 30.0%
! TATGTATAGTTTTTGTCTGG+GGG + chr4_2:52556337-52556356 Msa0606340:intron 30.0%
GCTACTCTTACTAAAAATGT+TGG + chr4_2:52556611-52556630 Msa0606340:exon 30.0%
CATTACGTGGTTGAAATCAT+TGG - chr4_2:52553613-52553632 None:intergenic 35.0%
CAATGATTTCAACCACGTAA+TGG + chr4_2:52553611-52553630 Msa0606340:five_prime_UTR 35.0%
TTGTTCTTGACAAGTCTGAA+TGG + chr4_2:52553886-52553905 Msa0606340:CDS 35.0%
TGTTCTTGACAAGTCTGAAT+GGG + chr4_2:52553887-52553906 Msa0606340:CDS 35.0%
CTAACAACAGACATAGAAGA+AGG - chr4_2:52553939-52553958 None:intergenic 35.0%
!! AAAGAGAAAAAGAAGTACCG+CGG - chr4_2:52554030-52554049 None:intergenic 35.0%
CGGAATAATAAAGAAGTGGA+GGG - chr4_2:52554120-52554139 None:intergenic 35.0%
GAAGCGGAATAATAAAGAAG+TGG - chr4_2:52554124-52554143 None:intergenic 35.0%
!!! AGATGCTTCTAGTTTTAAGG+TGG - chr4_2:52554165-52554184 None:intergenic 35.0%
GTCTCACAATTGCTTATATC+AGG + chr4_2:52554583-52554602 Msa0606340:intron 35.0%
AAATGAATTCAAGAGTCCCA+AGG + chr4_2:52554621-52554640 Msa0606340:intron 35.0%
!!! TTGTTTTTGTTGCTTGTGTG+TGG + chr4_2:52554817-52554836 Msa0606340:intron 35.0%
CAACAGGATGTAATTCCAAA+TGG - chr4_2:52555124-52555143 None:intergenic 35.0%
CAGACATGATGTTTAACGTA+TGG + chr4_2:52555377-52555396 Msa0606340:intron 35.0%
! TTCTGATTTTGCTTCCATAG+GGG - chr4_2:52555556-52555575 None:intergenic 35.0%
TTGACGTTGCATGATAATCA+GGG - chr4_2:52555816-52555835 None:intergenic 35.0%
TTGAAGTAGCACAAAAGGTT+TGG + chr4_2:52556041-52556060 Msa0606340:CDS 35.0%
TGAAGTAGCACAAAAGGTTT+GGG + chr4_2:52556042-52556061 Msa0606340:CDS 35.0%
TGAGAACAATGTCCAATTTG+AGG + chr4_2:52556087-52556106 Msa0606340:CDS 35.0%
GAGAACAATGTCCAATTTGA+GGG + chr4_2:52556088-52556107 Msa0606340:CDS 35.0%
! GGCTATGTATAGTTTTTGTC+TGG + chr4_2:52556334-52556353 Msa0606340:intron 35.0%
! ATGTCTTCAATGCGGTATTT+TGG - chr4_2:52556453-52556472 None:intergenic 35.0%
AAAATACCGCATTGAAGACA+TGG + chr4_2:52556452-52556471 Msa0606340:CDS 35.0%
AAATACCGCATTGAAGACAT+GGG + chr4_2:52556453-52556472 Msa0606340:CDS 35.0%
TTTGACGAACAATTCCTTCT+TGG - chr4_2:52556590-52556609 None:intergenic 35.0%
AAGAAGGAATTGTTCGTCAA+AGG + chr4_2:52556589-52556608 Msa0606340:CDS 35.0%
CAATATGCATCACCATTACG+TGG - chr4_2:52553626-52553645 None:intergenic 40.0%
TCCACATGTCAAGTGAAGAT+AGG + chr4_2:52553674-52553693 Msa0606340:five_prime_UTR 40.0%
ACCTATCTTCACTTGACATG+TGG - chr4_2:52553678-52553697 None:intergenic 40.0%
GTCAAGTGATGTCTCATTTG+CGG - chr4_2:52553714-52553733 None:intergenic 40.0%
ACATAGAAGAAGGTTGACGT+AGG - chr4_2:52553929-52553948 None:intergenic 40.0%
GCGGAATAATAAAGAAGTGG+AGG - chr4_2:52554121-52554140 None:intergenic 40.0%
!!! TTCTAGTTTTAAGGTGGCTG+TGG - chr4_2:52554159-52554178 None:intergenic 40.0%
CACTTATAGATAAGCGCTCA+AGG + chr4_2:52554381-52554400 Msa0606340:intron 40.0%
CAGAAAACAATTGCTTCACC+CGG + chr4_2:52554843-52554862 Msa0606340:intron 40.0%
AGAAAACAATTGCTTCACCC+GGG + chr4_2:52554844-52554863 Msa0606340:intron 40.0%
ATGAGTCCAATGCTACATGT+GGG + chr4_2:52554886-52554905 Msa0606340:CDS 40.0%
TGATGGAACTGTCACAAGAA+GGG - chr4_2:52554970-52554989 None:intergenic 40.0%
GAGATATACTCTCCAAGTGA+TGG - chr4_2:52554987-52555006 None:intergenic 40.0%
! TCACTTGGAGAGTATATCTC+TGG + chr4_2:52554987-52555006 Msa0606340:CDS 40.0%
GAGAGTTTCCTCAAAGAGAA+TGG - chr4_2:52555015-52555034 None:intergenic 40.0%
CTCTACCAATCTACAGTTGA+TGG + chr4_2:52555032-52555051 Msa0606340:CDS 40.0%
!! ACCAATCTACAGTTGATGGA+AGG + chr4_2:52555036-52555055 Msa0606340:CDS 40.0%
TCCTTCCATCAACTGTAGAT+TGG - chr4_2:52555040-52555059 None:intergenic 40.0%
ATCGAGCAAAACATTGTTCC+TGG + chr4_2:52555077-52555096 Msa0606340:CDS 40.0%
TCCTGGTATCAAAGTTGACA+AGG + chr4_2:52555094-52555113 Msa0606340:CDS 40.0%
ACCTTGTCAACTTTGATACC+AGG - chr4_2:52555098-52555117 None:intergenic 40.0%
AGTTGACAAGGTAAGCCATT+TGG + chr4_2:52555106-52555125 Msa0606340:intron 40.0%
! TCTGATTTTGCTTCCATAGG+GGG - chr4_2:52555555-52555574 None:intergenic 40.0%
CTTGACGTTGCATGATAATC+AGG - chr4_2:52555817-52555836 None:intergenic 40.0%
GGTTTATTAGGACAACGGAT+TGG + chr4_2:52555961-52555980 Msa0606340:intron 40.0%
! AGATCTCTGGTTCCACAATT+GGG - chr4_2:52555988-52556007 None:intergenic 40.0%
! AAGATCTCTGGTTCCACAAT+TGG - chr4_2:52555989-52556008 None:intergenic 40.0%
ATCTTGCTTGATGGAGAACA+TGG + chr4_2:52556004-52556023 Msa0606340:CDS 40.0%
ATTGGACATTGTTCTCAGCA+AGG - chr4_2:52556084-52556103 None:intergenic 40.0%
TGTCACATACCATGATACCA+GGG - chr4_2:52556231-52556250 None:intergenic 40.0%
!! GTTCATGGCATTCAAGTTGA+GGG - chr4_2:52556383-52556402 None:intergenic 40.0%
AATACCGCATTGAAGACATG+GGG + chr4_2:52556454-52556473 Msa0606340:CDS 40.0%
!! TTGAGCAATTGAGTTGGACT+TGG - chr4_2:52556530-52556549 None:intergenic 40.0%
TCCAACTCAATTGCTCAACT+TGG + chr4_2:52556532-52556551 Msa0606340:CDS 40.0%
! TCCAAGTTGAGCAATTGAGT+TGG - chr4_2:52556536-52556555 None:intergenic 40.0%
! GCAGTTAATGATGGTGTTGA+CGG + chr4_2:52556676-52556695 Msa0606340:three_prime_UTR 40.0%
GTCCACGAAACCCAATTAAA+AGG + chr4_2:52556888-52556907 Msa0606340:three_prime_UTR 40.0%
!! CTCCTTTTAATTGGGTTTCG+TGG - chr4_2:52556893-52556912 None:intergenic 40.0%
TGACAAGTCTGAATGGGTGA+AGG + chr4_2:52553893-52553912 Msa0606340:CDS 45.0%
GACAAGTCTGAATGGGTGAA+GGG + chr4_2:52553894-52553913 Msa0606340:CDS 45.0%
AGAAGAAGGTTGACGTAGGA+GGG - chr4_2:52553925-52553944 None:intergenic 45.0%
TAGAAGAAGGTTGACGTAGG+AGG - chr4_2:52553926-52553945 None:intergenic 45.0%
TAAGACCTGATGGAGCAGTA+GGG - chr4_2:52553968-52553987 None:intergenic 45.0%
GCTCTAATGGTAAGACCTGA+TGG - chr4_2:52553978-52553997 None:intergenic 45.0%
TCAGGTCTTACCATTAGAGC+TGG + chr4_2:52553978-52553997 Msa0606340:CDS 45.0%
!!! TAGTTTTAAGGTGGCTGTGG+TGG - chr4_2:52554156-52554175 None:intergenic 45.0%
! TGTAGCATTGGACTCATCCA+TGG - chr4_2:52554883-52554902 None:intergenic 45.0%
GATGAGTCCAATGCTACATG+TGG + chr4_2:52554885-52554904 Msa0606340:CDS 45.0%
!! GGAAGCGTTTGGCTTCAATT+GGG + chr4_2:52554907-52554926 Msa0606340:CDS 45.0%
! GTGATGGAACTGTCACAAGA+AGG - chr4_2:52554971-52554990 None:intergenic 45.0%
CTTGTGACAGTTCCATCACT+TGG + chr4_2:52554972-52554991 Msa0606340:CDS 45.0%
GTGTCATGAACAATAGGGTC+TGG + chr4_2:52555405-52555424 Msa0606340:intron 45.0%
TTCATCGTTGGAACCAGCTA+GGG - chr4_2:52555434-52555453 None:intergenic 45.0%
ATTCATCGTTGGAACCAGCT+AGG - chr4_2:52555435-52555454 None:intergenic 45.0%
CTGGTTCCAACGATGAATCA+TGG + chr4_2:52555437-52555456 Msa0606340:CDS 45.0%
TTGGCACCATGATTCATCGT+TGG - chr4_2:52555446-52555465 None:intergenic 45.0%
! AACGATGAATCATGGTGCCA+AGG + chr4_2:52555445-52555464 Msa0606340:CDS 45.0%
TCAGCTGCATACTACCAACA+AGG + chr4_2:52555490-52555509 Msa0606340:CDS 45.0%
ACAGTTGTGAGCATCCCAAA+CGG + chr4_2:52555644-52555663 Msa0606340:CDS 45.0%
TCGCTATGCTGCAATTAGTC+AGG + chr4_2:52555709-52555728 Msa0606340:CDS 45.0%
TTGCATGATAATCAGGGTCG+TGG - chr4_2:52555810-52555829 None:intergenic 45.0%
GAACCAGAGATCTTGCTTGA+TGG + chr4_2:52555995-52556014 Msa0606340:CDS 45.0%
TCTCCATCAAGCAAGATCTC+TGG - chr4_2:52556001-52556020 None:intergenic 45.0%
TGAGGAGAATGCCCTCAAAT+TGG - chr4_2:52556102-52556121 None:intergenic 45.0%
GTGTCACATACCATGATACC+AGG - chr4_2:52556232-52556251 None:intergenic 45.0%
!! GGTTCATGGCATTCAAGTTG+AGG - chr4_2:52556384-52556403 None:intergenic 45.0%
! TGGGTTTGGAGATTGGTTCA+TGG - chr4_2:52556398-52556417 None:intergenic 45.0%
TGAACCAATCTCCAAACCCA+TGG + chr4_2:52556398-52556417 Msa0606340:CDS 45.0%
! GCTCAACTTGGAAAGTACAC+TGG + chr4_2:52556544-52556563 Msa0606340:CDS 45.0%
! ACTTGGAAAGTACACTGGTG+AGG + chr4_2:52556549-52556568 Msa0606340:CDS 45.0%
! CTTGGAAAGTACACTGGTGA+GGG + chr4_2:52556550-52556569 Msa0606340:CDS 45.0%
CAATTCCTTCTTGGCTTCCT+CGG - chr4_2:52556581-52556600 None:intergenic 45.0%
GCAGCACTAGCAGTTAATGA+TGG + chr4_2:52556667-52556686 Msa0606340:three_prime_UTR 45.0%
!! GTTAATGATGGTGTTGACGG+AGG + chr4_2:52556679-52556698 Msa0606340:three_prime_UTR 45.0%
GTAAGACCTGATGGAGCAGT+AGG - chr4_2:52553969-52553988 None:intergenic 50.0%
! GGCGTATGAACCAGCTCTAA+TGG - chr4_2:52553991-52554010 None:intergenic 50.0%
! GTGGTGGAGGAGTTAAGAAG+CGG - chr4_2:52554140-52554159 None:intergenic 50.0%
!!! TTTTAAGGTGGCTGTGGTGG+AGG - chr4_2:52554153-52554172 None:intergenic 50.0%
AGTCCCAAGGTCTAAGAGAG+AGG + chr4_2:52554634-52554653 Msa0606340:intron 50.0%
GTCCCAAGGTCTAAGAGAGA+GGG + chr4_2:52554635-52554654 Msa0606340:intron 50.0%
CTCCCTCTCTCTTAGACCTT+GGG - chr4_2:52554640-52554659 None:intergenic 50.0%
TCTCCCTCTCTCTTAGACCT+TGG - chr4_2:52554641-52554660 None:intergenic 50.0%
AGGTCTAAGAGAGAGGGAGA+AGG + chr4_2:52554641-52554660 Msa0606340:intron 50.0%
ACGCTTCCCACATGTAGCAT+TGG - chr4_2:52554895-52554914 None:intergenic 50.0%
!! TGCTACATGTGGGAAGCGTT+TGG + chr4_2:52554896-52554915 Msa0606340:CDS 50.0%
!! GGGAAGCGTTTGGCTTCAAT+TGG + chr4_2:52554906-52554925 Msa0606340:CDS 50.0%
!! CTCTGGTGCCATTCTCTTTG+AGG + chr4_2:52555004-52555023 Msa0606340:CDS 50.0%
TCATCGTTGGAACCAGCTAG+GGG - chr4_2:52555433-52555452 None:intergenic 50.0%
! TGAATCATGGTGCCAAGGTC+TGG + chr4_2:52555450-52555469 Msa0606340:CDS 50.0%
GTAGTATGCAGCTGAACGAG+AGG - chr4_2:52555485-52555504 None:intergenic 50.0%
! AAGGTGCTCGTTTCGCCAAA+TGG + chr4_2:52555509-52555528 Msa0606340:CDS 50.0%
!! CAACGGATTGGTCCCAATTG+TGG + chr4_2:52555973-52555992 Msa0606340:CDS 50.0%
AGCACAAAAGGTTTGGGCTG+AGG + chr4_2:52556048-52556067 Msa0606340:CDS 50.0%
CATTCTCCTCAAGCCTAGCA+TGG + chr4_2:52556111-52556130 Msa0606340:CDS 50.0%
GAGTAACCATGCTAGGCTTG+AGG - chr4_2:52556120-52556139 None:intergenic 50.0%
AAGCCTAGCATGGTTACTCC+AGG + chr4_2:52556121-52556140 Msa0606340:CDS 50.0%
GTATAGTCAGCAACTGTGGC+AGG - chr4_2:52556172-52556191 None:intergenic 50.0%
! GAGGGTATAGTCAGCAACTG+TGG - chr4_2:52556176-52556195 None:intergenic 50.0%
ATACCCTCAAGCTCCTTCAC+AGG + chr4_2:52556188-52556207 Msa0606340:CDS 50.0%
TCTCCTGTGAAGGAGCTTGA+GGG - chr4_2:52556194-52556213 None:intergenic 50.0%
TTCTCCTGTGAAGGAGCTTG+AGG - chr4_2:52556195-52556214 None:intergenic 50.0%
TTTGTCTGGGGGACAATCTG+AGG + chr4_2:52556348-52556367 Msa0606340:CDS 50.0%
ATGAGAACGACACGTGCCAT+GGG - chr4_2:52556417-52556436 None:intergenic 50.0%
TATGAGAACGACACGTGCCA+TGG - chr4_2:52556418-52556437 None:intergenic 50.0%
!! CAATTGAGTTGGACTTGGCG+CGG - chr4_2:52556525-52556544 None:intergenic 50.0%
TGAATCCGAGGAAGCCAAGA+AGG + chr4_2:52556573-52556592 Msa0606340:CDS 50.0%
TGCAACCCTACTGCTCCATC+AGG + chr4_2:52553960-52553979 Msa0606340:CDS 55.0%
! TTCACCCGGGCGTGGTATTT+TGG + chr4_2:52554857-52554876 Msa0606340:CDS 55.0%
ATGGCCAAAATACCACGCCC+GGG - chr4_2:52554864-52554883 None:intergenic 55.0%
CATGGCCAAAATACCACGCC+CGG - chr4_2:52554865-52554884 None:intergenic 55.0%
!! CCATGCTTGGCGGTTAGCTT+CGG - chr4_2:52554943-52554962 None:intergenic 55.0%
! CAAGAAGGGTACGCCATGCT+TGG - chr4_2:52554956-52554975 None:intergenic 55.0%
! TCATGGTGCCAAGGTCTGGA+CGG + chr4_2:52555454-52555473 Msa0606340:CDS 55.0%
TGGCGAAACGAGCACCTTGT+TGG - chr4_2:52555507-52555526 None:intergenic 55.0%
! GCAGGGGTACACTCACCATT+TGG - chr4_2:52555527-52555546 None:intergenic 55.0%
TTCCATAGGGGGATCGTGCA+GGG - chr4_2:52555544-52555563 None:intergenic 55.0%
TCCTTGACAGCCAGAGCAGA+GGG - chr4_2:52555671-52555690 None:intergenic 55.0%
TTCCTTGACAGCCAGAGCAG+AGG - chr4_2:52555672-52555691 None:intergenic 55.0%
GCTCCTGGAGTAACCATGCT+AGG - chr4_2:52556127-52556146 None:intergenic 55.0%
TACTCCAGGAGCTGAGTGCA+AGG + chr4_2:52556135-52556154 Msa0606340:CDS 55.0%
TTGTCCTTGCACTCAGCTCC+TGG - chr4_2:52556142-52556161 None:intergenic 55.0%
AGGAGCTGAGTGCAAGGACA+AGG + chr4_2:52556141-52556160 Msa0606340:CDS 55.0%
CTGGGGGAATTCTCCTGTGA+AGG - chr4_2:52556204-52556223 None:intergenic 55.0%
ATGATACCAGGGACAGCTGG+GGG - chr4_2:52556220-52556239 None:intergenic 55.0%
CATGATACCAGGGACAGCTG+GGG - chr4_2:52556221-52556240 None:intergenic 55.0%
CCATGATACCAGGGACAGCT+GGG - chr4_2:52556222-52556241 None:intergenic 55.0%
ACCATGATACCAGGGACAGC+TGG - chr4_2:52556223-52556242 None:intergenic 55.0%
CGTGCCATGGGTTTGGAGAT+TGG - chr4_2:52556405-52556424 None:intergenic 55.0%
AACGACACGTGCCATGGGTT+TGG - chr4_2:52556412-52556431 None:intergenic 55.0%
ACCGCATTGAAGACATGGGG+AGG + chr4_2:52556457-52556476 Msa0606340:CDS 55.0%
GCCTCCCCATGTCTTCAATG+CGG - chr4_2:52556461-52556480 None:intergenic 55.0%
CGCGGTCTTGACGAGCTCAT+CGG - chr4_2:52554012-52554031 None:intergenic 60.0%
CGATGAGCTCGTCAAGACCG+CGG + chr4_2:52554010-52554029 Msa0606340:CDS 60.0%
ACAATTGCTTCACCCGGGCG+TGG + chr4_2:52554849-52554868 Msa0606340:CDS 60.0%
!!! CGGGCGTGGTATTTTGGCCA+TGG + chr4_2:52554863-52554882 Msa0606340:CDS 60.0%
CCGAAGCTAACCGCCAAGCA+TGG + chr4_2:52554940-52554959 Msa0606340:CDS 60.0%
! GAAGGGTACGCCATGCTTGG+CGG - chr4_2:52554953-52554972 None:intergenic 60.0%
AGGCAAGACCGTCCAGACCT+TGG - chr4_2:52555465-52555484 None:intergenic 60.0%
TCCATAGGGGGATCGTGCAG+GGG - chr4_2:52555543-52555562 None:intergenic 60.0%
CTTCCATAGGGGGATCGTGC+AGG - chr4_2:52555545-52555564 None:intergenic 60.0%
CCAGAGCAGAGGGACCGTTT+GGG - chr4_2:52555661-52555680 None:intergenic 60.0%
TCCCTCTGCTCTGGCTGTCA+AGG + chr4_2:52555667-52555686 Msa0606340:CDS 60.0%
TGGCTGTCAAGGAAGCAGCC+TGG + chr4_2:52555678-52555697 Msa0606340:CDS 60.0%
GGCTGTCAAGGAAGCAGCCT+GGG + chr4_2:52555679-52555698 Msa0606340:CDS 60.0%
GCTGTCAAGGAAGCAGCCTG+GGG + chr4_2:52555680-52555699 Msa0606340:CDS 60.0%
CAAGGAAGCAGCCTGGGGTT+TGG + chr4_2:52555685-52555704 Msa0606340:CDS 60.0%
AGCATAGCGAGCCAAACCCC+AGG - chr4_2:52555699-52555718 None:intergenic 60.0%
GTCAGCAACTGTGGCAGGAG+AGG - chr4_2:52556167-52556186 None:intergenic 60.0%
AGAATTCCCCCAGCTGTCCC+TGG + chr4_2:52556211-52556230 Msa0606340:CDS 60.0%
CCCAGCTGTCCCTGGTATCA+TGG + chr4_2:52556219-52556238 Msa0606340:CDS 60.0%
CTGCCTTCACGTTCTCTGCG+CGG - chr4_2:52556483-52556502 None:intergenic 60.0%
CACTGGTGAGGGTGAATCCG+AGG + chr4_2:52556561-52556580 Msa0606340:CDS 60.0%
TAGGGTCTGGTGCCCCTAGC+TGG + chr4_2:52555418-52555437 Msa0606340:intron 65.0%
ACCCCTGCACGATCCCCCTA+TGG + chr4_2:52555539-52555558 Msa0606340:intron 65.0%
CCCAAACGGTCCCTCTGCTC+TGG + chr4_2:52555658-52555677 Msa0606340:CDS 65.0%
GCCAGAGCAGAGGGACCGTT+TGG - chr4_2:52555662-52555681 None:intergenic 65.0%
AGGCCGCGCAGAGAACGTGA+AGG + chr4_2:52556477-52556496 Msa0606340:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52553557 52556949 52553557 ID=Msa0606340;Name=Msa0606340
chr4_2 mRNA 52553557 52556949 52553557 ID=Msa0606340-mRNA-1;Parent=Msa0606340;Name=Msa0606340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=272|1|1|1|0.83|0.71|7|325|400
chr4_2 exon 52553557 52553824 52553557 ID=Msa0606340-mRNA-1:exon:12887;Parent=Msa0606340-mRNA-1
chr4_2 exon 52553845 52554031 52553845 ID=Msa0606340-mRNA-1:exon:12888;Parent=Msa0606340-mRNA-1
chr4_2 exon 52554846 52555115 52554846 ID=Msa0606340-mRNA-1:exon:12889;Parent=Msa0606340-mRNA-1
chr4_2 exon 52555421 52555530 52555421 ID=Msa0606340-mRNA-1:exon:12890;Parent=Msa0606340-mRNA-1
chr4_2 exon 52555640 52555730 52555640 ID=Msa0606340-mRNA-1:exon:12891;Parent=Msa0606340-mRNA-1
chr4_2 exon 52555971 52556240 52555971 ID=Msa0606340-mRNA-1:exon:12892;Parent=Msa0606340-mRNA-1
chr4_2 exon 52556346 52556949 52556346 ID=Msa0606340-mRNA-1:exon:12893;Parent=Msa0606340-mRNA-1
chr4_2 five_prime_UTR 52553557 52553824 52553557 ID=Msa0606340-mRNA-1:five_prime_utr;Parent=Msa0606340-mRNA-1
chr4_2 five_prime_UTR 52553845 52553848 52553845 ID=Msa0606340-mRNA-1:five_prime_utr;Parent=Msa0606340-mRNA-1
chr4_2 CDS 52553849 52554031 52553849 ID=Msa0606340-mRNA-1:cds;Parent=Msa0606340-mRNA-1
chr4_2 CDS 52554846 52555115 52554846 ID=Msa0606340-mRNA-1:cds;Parent=Msa0606340-mRNA-1
chr4_2 CDS 52555421 52555530 52555421 ID=Msa0606340-mRNA-1:cds;Parent=Msa0606340-mRNA-1
chr4_2 CDS 52555640 52555730 52555640 ID=Msa0606340-mRNA-1:cds;Parent=Msa0606340-mRNA-1
chr4_2 CDS 52555971 52556240 52555971 ID=Msa0606340-mRNA-1:cds;Parent=Msa0606340-mRNA-1
chr4_2 CDS 52556346 52556624 52556346 ID=Msa0606340-mRNA-1:cds;Parent=Msa0606340-mRNA-1
chr4_2 three_prime_UTR 52556625 52556949 52556625 ID=Msa0606340-mRNA-1:three_prime_utr;Parent=Msa0606340-mRNA-1
Gene Sequence

>Msa0606340

ATGGCTTCTGCTTCAGCATCTTGTTTCAAGTCATCACTTGTTCTTGACAAGTCTGAATGGGTGAAGGGACAAACCCTCCTACGTCAACCTTCTTCTATGTCTGTTGTTAGATGCAACCCTACTGCTCCATCAGGTCTTACCATTAGAGCTGGTTCATACGCCGATGAGCTCGTCAAGACCGCGAAAACAATTGCTTCACCCGGGCGTGGTATTTTGGCCATGGATGAGTCCAATGCTACATGTGGGAAGCGTTTGGCTTCAATTGGGCTAGAGAACACCGAAGCTAACCGCCAAGCATGGCGTACCCTTCTTGTGACAGTTCCATCACTTGGAGAGTATATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCTACAGTTGATGGAAGGAAGATTGTTGACGTGCTTATCGAGCAAAACATTGTTCCTGGTATCAAAGTTGACAAGGGTCTGGTGCCCCTAGCTGGTTCCAACGATGAATCATGGTGCCAAGGTCTGGACGGTCTTGCCTCTCGTTCAGCTGCATACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACAGTTGTGAGCATCCCAAACGGTCCCTCTGCTCTGGCTGTCAAGGAAGCAGCCTGGGGTTTGGCTCGCTATGCTGCAATTAGTCAGGACAACGGATTGGTCCCAATTGTGGAACCAGAGATCTTGCTTGATGGAGAACATGGTATTGACAGAACTTTTGAAGTAGCACAAAAGGTTTGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCAATTTGAGGGCATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCTGAGTGCAAGGACAAGGCCTCTCCTGCCACAGTTGCTGACTATACCCTCAAGCTCCTTCACAGGAGAATTCCCCCAGCTGTCCCTGGTATCATGTTTTTGTCTGGGGGACAATCTGAGGTTGAAGCAACCCTCAACTTGAATGCCATGAACCAATCTCCAAACCCATGGCACGTGTCGTTCTCATACGCAAGAGCTCTCCAAAATACCGCATTGAAGACATGGGGAGGCCGCGCAGAGAACGTGAAGGCAGCTCAAGAAGCGCTTCTTTTCCGCGCCAAGTCCAACTCAATTGCTCAACTTGGAAAGTACACTGGTGAGGGTGAATCCGAGGAAGCCAAGAAGGAATTGTTCGTCAAAGGCTACTCTTACTAA

Protein sequence

>Msa0606340

MASASASCFKSSLVLDKSEWVKGQTLLRQPSSMSVVRCNPTAPSGLTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAWRTLLVTVPSLGEYISGAILFEETLYQSTVDGRKIVDVLIEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVQFEGILLKPSMVTPGAECKDKASPATVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRAENVKAAQEALLFRAKSNSIAQLGKYTGEGESEEAKKELFVKGYSY*