AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0760230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760230 MtrunA17_Chr5g0408921 98.255 573 10 0 43 615 1 573 0.0 1147
Msa0760230 MtrunA17_Chr8g0369621 72.109 588 158 4 30 614 29 613 0.0 806
Msa0760230 MtrunA17_Chr7g0251871 59.227 569 216 5 43 607 1 557 0.0 635
Msa0760230 MtrunA17_Chr3g0106801 38.011 563 295 12 43 601 1 513 2.64e-105 328
Msa0760230 MtrunA17_Chr4g0037301 32.143 560 337 14 47 601 13 534 6.98e-76 252
Msa0760230 MtrunA17_Chr3g0106821 36.691 417 212 10 43 451 1 373 3.92e-74 242
Msa0760230 MtrunA17_Chr5g0405621 31.643 572 336 15 47 611 11 534 1.09e-67 229
Msa0760230 MtrunA17_Chr4g0064981 27.863 585 370 16 41 601 3 559 1.35e-47 176
Msa0760230 MtrunA17_Chr2g0304561 26.712 584 371 15 41 601 4 553 4.05e-46 171
Msa0760230 MtrunA17_Chr7g0225191 24.829 584 405 13 39 600 5 576 1.45e-38 150
Msa0760230 MtrunA17_Chr3g0132161 23.295 601 372 18 39 601 5 554 2.82e-31 128
Msa0760230 MtrunA17_Chr1g0210291 25.569 571 381 14 49 607 25 563 4.24e-29 122
Msa0760230 MtrunA17_Chr1g0210274 24.739 574 391 14 49 611 26 569 8.05e-29 121
Msa0760230 MtrunA17_Chr1g0210284 24.655 580 384 16 49 611 26 569 7.48e-28 118
Msa0760230 MtrunA17_Chr1g0174101 24.746 590 397 18 36 611 11 567 1.09e-27 117
Msa0760230 MtrunA17_Chr1g0171591 23.715 603 408 17 30 611 5 576 8.36e-26 112
Msa0760230 MtrunA17_Chr2g0330551 22.973 592 368 16 47 609 5 537 6.05e-23 103
Msa0760230 MtrunA17_Chr3g0106831 40.299 134 68 3 468 601 1 122 8.70e-23 94.4
Msa0760230 MtrunA17_Chr5g0442481 30.942 223 141 5 389 608 319 531 2.79e-22 100
Msa0760230 MtrunA17_Chr7g0264861 28.992 238 155 9 380 607 344 577 5.39e-15 78.2
Msa0760230 MtrunA17_Chr7g0264861 27.861 201 138 4 49 244 29 227 8.80e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760230 AT5G45275.1 66.259 572 182 3 43 610 1 565 0.0 737
Msa0760230 AT4G19450.1 65.104 576 186 4 43 611 1 568 0.0 722
Msa0760230 AT1G31470.1 57.363 584 210 9 32 609 21 571 0.0 613
Msa0760230 AT3G01630.2 51.211 578 235 11 39 608 31 569 0.0 555
Msa0760230 AT3G01630.1 51.211 578 235 11 39 608 13 551 0.0 554
Msa0760230 AT4G19450.2 64.593 418 136 3 43 453 1 413 0.0 533
Msa0760230 AT2G30300.1 35.044 565 288 13 47 601 2 497 8.31e-84 271
Msa0760230 AT4G34950.1 30.700 557 359 14 49 600 16 550 2.12e-73 246
Msa0760230 AT2G16660.1 29.877 569 349 14 39 600 4 529 2.41e-64 221
Msa0760230 AT1G80530.1 27.491 582 353 17 44 601 8 544 8.48e-42 159
Msa0760230 AT2G16660.2 29.056 413 255 10 39 447 4 382 1.69e-41 155
Msa0760230 AT5G50630.1 25.835 569 368 16 49 609 16 538 1.38e-38 150
Msa0760230 AT5G50520.1 25.835 569 368 16 49 609 16 538 1.38e-38 150
Msa0760230 AT5G14120.1 26.451 586 386 14 39 600 6 570 5.35e-38 149
Msa0760230 AT2G28120.1 24.825 572 392 12 49 611 17 559 9.28e-38 148
Msa0760230 AT3G01930.2 26.235 587 391 13 39 600 6 575 6.85e-37 145
Msa0760230 AT2G39210.1 24.567 578 383 16 49 607 21 564 2.29e-33 135
Msa0760230 AT3G01930.3 24.709 429 284 10 39 444 6 418 1.42e-21 98.2
Msa0760230 AT3G01930.1 25.536 466 306 12 159 600 14 462 1.83e-19 92.0
Msa0760230 AT1G74780.1 28.755 233 151 7 372 600 301 522 1.10e-16 84.0
Msa0760230 AT2G34355.2 26.271 236 162 5 374 607 145 370 1.88e-14 75.9
Msa0760230 AT1G18940.1 27.869 244 151 10 375 607 296 525 2.33e-14 76.6
Msa0760230 AT2G34355.1 26.271 236 162 5 374 607 295 520 6.06e-14 75.1
Msa0760230 AT2G34355.1 28.856 201 115 7 49 230 7 198 5.98e-12 68.9
Msa0760230 AT2G34350.1 29.279 222 137 7 393 608 316 523 7.51e-14 75.1
Msa0760230 AT2G34350.1 29.268 205 123 5 43 230 1 200 1.07e-11 68.2
Msa0760230 AT2G34350.2 29.279 222 137 7 393 608 316 523 7.51e-14 75.1
Msa0760230 AT2G34350.2 29.268 205 123 5 43 230 1 200 1.07e-11 68.2

Find 137 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCATCGTTCTCCTTCTT+TGG 0.177256 5_2:+16656240 Msa0760230:CDS
AAAGTGTTTGGTTGGTCTTC+TGG 0.219575 5_2:+16653276 Msa0760230:CDS
CCCAATTGCATTCATCTTGC+TGG 0.229813 5_2:+16656600 Msa0760230:CDS
TGGGACGACAATGCTATTTC+TGG 0.278196 5_2:+16656884 Msa0760230:CDS
ACATGTATAGAACATGATTT+TGG 0.296285 5_2:+16657094 Msa0760230:three_prime_UTR
TCAATGGGTCTTGTTGGTTA+TGG 0.299224 5_2:+16653348 Msa0760230:CDS
CATGTTTATTGCTGCTTCAA+TGG 0.301959 5_2:+16653332 Msa0760230:CDS
CATAATAATGTCTGATTCAT+TGG 0.304186 5_2:+16656855 Msa0760230:CDS
CCAATTGGATCCCTTCTCTA+TGG 0.305725 5_2:+16656775 Msa0760230:CDS
ATTCAAAGTAGAAGCAAATA+AGG 0.310941 5_2:+16657258 Msa0760230:three_prime_UTR
AATGCTAAGGATCTGTTAAC+TGG 0.327320 5_2:-16655454 None:intergenic
AAGGAAGGTACCAGAAAATA+AGG 0.329614 5_2:-16653408 None:intergenic
GGATCAGGTTAGAGGAAATA+TGG 0.330222 5_2:+16657296 Msa0760230:three_prime_UTR
CTTGTTTACAGCAATAATCT+TGG 0.332047 5_2:+16656162 Msa0760230:CDS
GAAGAGGGACAAGAGCATTT+AGG 0.334874 5_2:-16655570 None:intergenic
ATCTTGCCGTTATGTATTCC+TGG 0.337261 5_2:+16655802 Msa0760230:CDS
GCCGTTACATCAGAGCTATT+TGG 0.344138 5_2:+16656706 Msa0760230:CDS
GCAAATAAGGATGGAAGCTT+TGG 0.351496 5_2:+16657271 Msa0760230:three_prime_UTR
AAAACAATCATAAGCATGTT+TGG 0.355071 5_2:-16656974 None:intergenic
GGACAGATAGCTCAATCTTT+AGG 0.355909 5_2:+16656183 Msa0760230:CDS
TGATACTAATAGCAACAATA+TGG 0.363183 5_2:+16653136 Msa0760230:CDS
TGCCTCTTTATACGTGGCTT+TGG 0.374559 5_2:-16652995 None:intergenic
TGGCAGGACAATCAAGAAAA+TGG 0.374666 5_2:+16653112 Msa0760230:CDS
CTCATAACAAATATTCCAAT+TGG 0.383465 5_2:+16656760 Msa0760230:CDS
CTGCTTGGTGAAAACGGATA+TGG 0.383934 5_2:+16655982 Msa0760230:CDS
GCCAGCAAGATGAATGCAAT+TGG 0.384601 5_2:-16656601 None:intergenic
ATGTTTATTGCTGCTTCAAT+GGG 0.387895 5_2:+16653333 Msa0760230:CDS
GCTGCTTCAATGGGTCTTGT+TGG 0.391680 5_2:+16653342 Msa0760230:CDS
CTTTGGATGGATCAGGTTAG+AGG 0.394442 5_2:+16657288 Msa0760230:three_prime_UTR
AAGTTCTACTTTGCAAGGAC+AGG 0.411995 5_2:+16656550 Msa0760230:CDS
GCTATCTCGGCACCTGGTAA+TGG 0.412584 5_2:+16656829 Msa0760230:CDS
CAGCCGCGGTTCTTGTGAAA+AGG 0.416501 5_2:+16656088 Msa0760230:CDS
AGTGCTATGGCACTTAATAT+AGG 0.419939 5_2:+16656634 Msa0760230:CDS
GCTATTTCTGGACATTTGTA+TGG 0.429375 5_2:+16656896 Msa0760230:CDS
GCAGGATCAATTGGAAATGC+TGG 0.431793 5_2:+16656053 Msa0760230:CDS
TATTTCTGCGGAGGTACAAT+TGG 0.437385 5_2:+16656138 Msa0760230:CDS
CCAGCAAGATGAATGCAATT+GGG 0.438820 5_2:-16656600 None:intergenic
ATGGAAGCTTTGGATGGATC+AGG 0.452451 5_2:+16657281 Msa0760230:three_prime_UTR
TTTCTGGACATTTGTATGGT+GGG 0.453355 5_2:+16656900 Msa0760230:CDS
ATAAACATGACAAGAGAGAT+TGG 0.454947 5_2:-16653318 None:intergenic
GTGTTATCTATGCTAGAGAT+TGG 0.458698 5_2:+16655824 Msa0760230:CDS
AGTGACAACCCTTGTCCCTT+CGG 0.460857 5_2:-16657480 None:intergenic
AATATAGGAACTGCACTAAT+CGG 0.461447 5_2:+16656649 Msa0760230:CDS
TCTCTCTATCTCTTCTTCCT+AGG 0.464031 5_2:-16653065 None:intergenic
CAAGGCCTGCTTGGTGAAAA+CGG 0.464458 5_2:+16655976 Msa0760230:CDS
ACTTACTTTCGAATGTAGTC+AGG 0.465887 5_2:-16656282 None:intergenic
CTTCTCCATTCCTCCCTCCT+AGG 0.467951 5_2:+16653048 Msa0760230:CDS
TGGGGATGTATATCTATCAT+AGG 0.468428 5_2:+16656919 Msa0760230:CDS
CAGTCGGTTGCGCTGAAATA+CGG 0.476009 5_2:-16657005 None:intergenic
AGATAGAGTTGATCTGATGA+AGG 0.476307 5_2:-16655544 None:intergenic
GCACTCACTGTGAGTTTCAA+TGG 0.479460 5_2:+16655478 Msa0760230:CDS
GTCTGATTCATTGGTATGCA+TGG 0.481027 5_2:+16656864 Msa0760230:CDS
AAGTTGATGAGGCAAAGATT+AGG 0.484771 5_2:-16655729 None:intergenic
GAGAGAGAGTCAGTGATGGC+AGG 0.488607 5_2:+16653096 Msa0760230:CDS
CCATAGAGAAGGGATCCAAT+TGG 0.490493 5_2:-16656775 None:intergenic
CTCTATCTCTTCTTCCTAGG+AGG 0.491521 5_2:-16653062 None:intergenic
CAAAGCAGCGCTCGGAGCAA+TGG 0.493468 5_2:+16655946 Msa0760230:CDS
AGTGACATGGGTAAAGTGTT+TGG 0.497761 5_2:+16653264 Msa0760230:CDS
TTCTGGACATTTGTATGGTG+GGG 0.499270 5_2:+16656901 Msa0760230:CDS
TGAAAGCAAGCGTCCAAAGA+AGG 0.499870 5_2:-16656253 None:intergenic
CGCGGTTCTTGTGAAAAGGT+TGG 0.500230 5_2:+16656092 Msa0760230:CDS
AAAGGCGGCTGGCGAAGAAT+CGG 0.506346 5_2:-16655616 None:intergenic
GGAGAATGAGTGTCTGATAA+AGG 0.510192 5_2:-16655634 None:intergenic
GAGGAGAGATATAGATTCAG+AGG 0.510231 5_2:+16657188 Msa0760230:three_prime_UTR
TCCAAATAGCTCTGATGTAA+CGG 0.511498 5_2:-16656707 None:intergenic
GCACTAATCGGTCTGAGCTC+AGG 0.513327 5_2:+16656661 Msa0760230:CDS
AGGAGGGAGGAATGGAGAAG+TGG 0.514203 5_2:-16653045 None:intergenic
GGAGATGCTCAAGGCCTGCT+TGG 0.515078 5_2:+16655967 Msa0760230:CDS
CCTAGCAACTGCAAGTGACA+TGG 0.518854 5_2:+16653251 Msa0760230:CDS
TATATTTGAAATGGAACCGA+AGG 0.519238 5_2:+16657464 Msa0760230:three_prime_UTR
ATCCTAGCTTAATGTGATTG+AGG 0.519588 5_2:+16657169 Msa0760230:three_prime_UTR
TTATGATGCTAACGCTATCT+CGG 0.520363 5_2:+16656816 Msa0760230:CDS
AACCAAAGCCACGTATAAAG+AGG 0.523181 5_2:+16652993 Msa0760230:CDS
TTCTTCCTAGGAGGGAGGAA+TGG 0.524020 5_2:-16653053 None:intergenic
TGAGTGGCTGCAGTATCTGT+TGG 0.525490 5_2:+16655392 Msa0760230:CDS
ATGGAGAAGTGGGAGAGAAG+TGG 0.529036 5_2:-16653034 None:intergenic
GAGCGCTGCTTTGACGCGTA+AGG 0.529395 5_2:-16655936 None:intergenic
ATTATTATGTTTCCATTACC+AGG 0.530316 5_2:-16656841 None:intergenic
CACAGTGAGTGCCAATGCTA+AGG 0.532501 5_2:-16655467 None:intergenic
CTTTGGTTTCGTACATTGTG+TGG 0.534009 5_2:-16652978 None:intergenic
GCAGCAAGTTCTACTTTGCA+AGG 0.536989 5_2:+16656545 Msa0760230:intron
GGAGGGAGGAATGGAGAAGT+GGG 0.537227 5_2:-16653044 None:intergenic
GAAATGGAACCGAAGGGACA+AGG 0.537270 5_2:+16657471 Msa0760230:three_prime_UTR
GCAACATCGAGGCTCTACTT+TGG 0.539225 5_2:+16655760 Msa0760230:CDS
ACATCGAGGCTCTACTTTGG+TGG 0.541326 5_2:+16655763 Msa0760230:CDS
GATAGAGTTGATCTGATGAA+GGG 0.542870 5_2:-16655543 None:intergenic
CCATGTCACTTGCAGTTGCT+AGG 0.543368 5_2:-16653251 None:intergenic
TGATTGACACTCAAACTGTC+AGG 0.546140 5_2:-16656730 None:intergenic
TCTATCTCTTCTTCCTAGGA+GGG 0.548270 5_2:-16653061 None:intergenic
TATTATATTGCATATTTCTG+CGG 0.551894 5_2:+16656126 Msa0760230:CDS
ATTTCTGGACATTTGTATGG+TGG 0.553978 5_2:+16656899 Msa0760230:CDS
AAAGTAGAAGCAAATAAGGA+TGG 0.554199 5_2:+16657262 Msa0760230:three_prime_UTR
TTTCATATTTGCAGCTGCAG+TGG 0.554888 5_2:+16656684 Msa0760230:CDS
TTTGCTTCTATTCATCACAA+TGG 0.561810 5_2:+16657227 Msa0760230:three_prime_UTR
CAGGATCAATTGGAAATGCT+GGG 0.562484 5_2:+16656054 Msa0760230:CDS
AAGATGAATGCAATTGGGGT+TGG 0.563489 5_2:-16656595 None:intergenic
CTCCTCAATCACATTAAGCT+AGG 0.565566 5_2:-16657171 None:intergenic
CAGCCATAAAACCATAGAGA+AGG 0.568142 5_2:-16656786 None:intergenic
GAGTGTCTGATAAAGGCGGC+TGG 0.575630 5_2:-16655627 None:intergenic
CTGCGATCGAAGTGAGAAGA+GGG 0.581355 5_2:-16655585 None:intergenic
GGCTTCATCAGAAAGTGCTA+TGG 0.581375 5_2:+16656621 Msa0760230:CDS
CGGAGCAATGGAGATGCTCA+AGG 0.582212 5_2:+16655958 Msa0760230:CDS
ATAAGGATGGAAGCTTTGGA+TGG 0.583608 5_2:+16657275 Msa0760230:three_prime_UTR
CAGCAAGATGAATGCAATTG+GGG 0.585987 5_2:-16656599 None:intergenic
AGTTCTACTTTGCAAGGACA+GGG 0.588322 5_2:+16656551 Msa0760230:CDS
AGTTAACAGATCCTTAGCAT+TGG 0.591254 5_2:+16655456 Msa0760230:CDS
GAGTTCTGACGAGCGGCGTG+TGG 0.594825 5_2:-16655655 None:intergenic
TGGGGTTGGTAAAAGTGCAA+TGG 0.599533 5_2:-16656581 None:intergenic
ACACGCCGCTCGTCAGAACT+CGG 0.602335 5_2:+16655657 Msa0760230:CDS
TCGTAACTTCTGACAACGCA+AGG 0.603324 5_2:+16657030 Msa0760230:exon
ATATGGATTCAAGCATTCAC+AGG 0.605178 5_2:+16653153 Msa0760230:CDS
ACATGGGTAAAGTGTTTGGT+TGG 0.605679 5_2:+16653268 Msa0760230:CDS
TATATTGCATATTTCTGCGG+AGG 0.606294 5_2:+16656129 Msa0760230:CDS
ATCTCTTCTTCCTAGGAGGG+AGG 0.610223 5_2:-16653058 None:intergenic
GCTAACGCTATCTCGGCACC+TGG 0.610840 5_2:+16656823 Msa0760230:CDS
TGCTTCATCAGAAGTTGATG+AGG 0.612975 5_2:-16655740 None:intergenic
GAGTCGATGTTCTATAACTG+TGG 0.613515 5_2:-16656206 None:intergenic
ATGCTAAGGATCTGTTAACT+GGG 0.628103 5_2:-16655453 None:intergenic
TTTGGTGGCAGAGTTAAGCA+AGG 0.628440 5_2:+16657112 Msa0760230:three_prime_UTR
AGCCATAAAACCATAGAGAA+GGG 0.631472 5_2:-16656785 None:intergenic
ATAACACCAGGAATACATAA+CGG 0.632522 5_2:-16655808 None:intergenic
CTAGCAACTGCAAGTGACAT+GGG 0.632844 5_2:+16653252 Msa0760230:CDS
AAATGGAACCGAAGGGACAA+GGG 0.636240 5_2:+16657472 Msa0760230:three_prime_UTR
TCTCTAGCATAGATAACACC+AGG 0.642863 5_2:-16655820 None:intergenic
TCTGATTCATTGGTATGCAT+GGG 0.660016 5_2:+16656865 Msa0760230:CDS
AGAAGTGGGAGAGAAGTGGT+TGG 0.663796 5_2:-16653030 None:intergenic
GCTGCGATCGAAGTGAGAAG+AGG 0.667471 5_2:-16655586 None:intergenic
GTCAGAAGTTACGACACAGT+CGG 0.667493 5_2:-16657021 None:intergenic
TCACAGTCTCAAATTTCACA+AGG 0.668385 5_2:-16657321 None:intergenic
TCTACTTTGCAAGGACAGGG+TGG 0.676179 5_2:+16656554 Msa0760230:CDS
ATATTTGAAATGGAACCGAA+GGG 0.679884 5_2:+16657465 Msa0760230:three_prime_UTR
GGGAGAAGAACATTCAGCCG+CGG 0.691345 5_2:+16656074 Msa0760230:CDS
TGTGAGTGCCTCTTTATACG+TGG 0.692389 5_2:-16653001 None:intergenic
GGTACTCAGAGAGCAAAGAG+TGG 0.699879 5_2:+16656003 Msa0760230:CDS
CTTCTGATGAAGCAACATCG+AGG 0.728233 5_2:+16655749 Msa0760230:CDS
GAATGAGTGTCTGATAAAGG+CGG 0.748464 5_2:-16655631 None:intergenic
GAAGGCTCGGATGAACAGCG+CGG 0.798034 5_2:-16655852 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTTTAATTTAT+GGG - chr5_2:16653739-16653758 None:intergenic 0.0%
!!! TAAATATTTTTTTTAATTTA+TGG - chr5_2:16653740-16653759 None:intergenic 0.0%
!! AACAAAAAATACAAAAAAAA+AGG - chr5_2:16653465-16653484 None:intergenic 10.0%
!! AGTCTTTATTAATTAATTAA+TGG + chr5_2:16653490-16653509 Msa0760230:intron 10.0%
!!! TTAAAATATTCTTTTTTTGA+TGG + chr5_2:16653899-16653918 Msa0760230:intron 10.0%
!!! AATGATAAAGAATATTTTAA+AGG - chr5_2:16653933-16653952 None:intergenic 10.0%
!!! TATTTTTTTATTCAGAAAAT+AGG - chr5_2:16654358-16654377 None:intergenic 10.0%
!!! AAAAATAAGAGTAAAATTTT+AGG + chr5_2:16654371-16654390 Msa0760230:intron 10.0%
!! ATAATAACATTAATAATATG+TGG - chr5_2:16654529-16654548 None:intergenic 10.0%
!! TGAAAAAAATATATTTGAAA+TGG + chr5_2:16657455-16657474 Msa0760230:three_prime_UTR 10.0%
!! TTAAAAATTAGTAATTACGT+AGG + chr5_2:16653569-16653588 Msa0760230:intron 15.0%
!! TAAAAATTAGTAATTACGTA+GGG + chr5_2:16653570-16653589 Msa0760230:intron 15.0%
!!! AAAAATGAACATTTTTTGAA+AGG + chr5_2:16654098-16654117 Msa0760230:intron 15.0%
!!! CGAATATATTTTCAAAAAAT+TGG - chr5_2:16654150-16654169 None:intergenic 15.0%
!!! TTTTTTTTTATAGGTTAAGT+TGG - chr5_2:16654605-16654624 None:intergenic 15.0%
!! TTAAAATTGTACATATATGA+TGG + chr5_2:16656496-16656515 Msa0760230:intron 15.0%
!! TAAAATTGTACATATATGAT+GGG + chr5_2:16656497-16656516 Msa0760230:intron 15.0%
!! AAACTGAAATGAGAAATATA+GGG - chr5_2:16653442-16653461 None:intergenic 20.0%
!! AATTATTAAGTAACCACTAT+TGG + chr5_2:16653526-16653545 Msa0760230:intron 20.0%
!!! TTTCTTATGTTTTGAATGAA+TGG + chr5_2:16654328-16654347 Msa0760230:intron 20.0%
!! CATCTATGTTAGTATTTATA+TGG - chr5_2:16654931-16654950 None:intergenic 20.0%
!!! TATTATATTGCATATTTCTG+CGG + chr5_2:16656126-16656145 Msa0760230:CDS 20.0%
!! TAAAATAACATGTCTTGTAT+AGG + chr5_2:16656360-16656379 Msa0760230:intron 20.0%
! TGATACTAATAGCAACAATA+TGG + chr5_2:16653136-16653155 Msa0760230:CDS 25.0%
! AAATGAGAAATATAGGGTAA+AGG - chr5_2:16653436-16653455 None:intergenic 25.0%
! GAAACTGAAATGAGAAATAT+AGG - chr5_2:16653443-16653462 None:intergenic 25.0%
!! CAAAAAGCTTTTAATAGTAG+TGG + chr5_2:16653847-16653866 Msa0760230:intron 25.0%
! AAAAGGACCTAAAAATGAAA+AGG - chr5_2:16654436-16654455 None:intergenic 25.0%
! ACATTAATAATATGTGGACT+TGG - chr5_2:16654523-16654542 None:intergenic 25.0%
! TTCTGAATTATAGGGAAAAT+GGG + chr5_2:16654711-16654730 Msa0760230:intron 25.0%
! TTTATCTCTCGATCTTAATT+TGG - chr5_2:16654747-16654766 None:intergenic 25.0%
! TCGAAACATTACTATTTGAA+AGG + chr5_2:16655083-16655102 Msa0760230:intron 25.0%
! CAAGTTCTTAGTTGTATTAT+AGG + chr5_2:16655247-16655266 Msa0760230:intron 25.0%
!! TCTAACATTGAACATTTTAG+CGG + chr5_2:16655687-16655706 Msa0760230:CDS 25.0%
!!! TGAATTGTGACAAGTTTTTT+GGG + chr5_2:16656031-16656050 Msa0760230:CDS 25.0%
! ATGTCTTGTATAGGTAAAAT+TGG + chr5_2:16656369-16656388 Msa0760230:intron 25.0%
!! GTTTTCTTAATGAAAAAGAC+TGG + chr5_2:16656444-16656463 Msa0760230:intron 25.0%
! CTCATAACAAATATTCCAAT+TGG + chr5_2:16656760-16656779 Msa0760230:CDS 25.0%
! ATTATTATGTTTCCATTACC+AGG - chr5_2:16656844-16656863 None:intergenic 25.0%
! CATAATAATGTCTGATTCAT+TGG + chr5_2:16656855-16656874 Msa0760230:CDS 25.0%
! AAAACAATCATAAGCATGTT+TGG - chr5_2:16656977-16656996 None:intergenic 25.0%
!! ACATGTATAGAACATGATTT+TGG + chr5_2:16657094-16657113 Msa0760230:three_prime_UTR 25.0%
! ATTCAAAGTAGAAGCAAATA+AGG + chr5_2:16657258-16657277 Msa0760230:three_prime_UTR 25.0%
ATAAACATGACAAGAGAGAT+TGG - chr5_2:16653321-16653340 None:intergenic 30.0%
! ATGTTTATTGCTGCTTCAAT+GGG + chr5_2:16653333-16653352 Msa0760230:CDS 30.0%
GAAATATAGGGTAAAGGAAA+AGG - chr5_2:16653430-16653449 None:intergenic 30.0%
AAAATAGCATACACCAATAG+TGG - chr5_2:16653542-16653561 None:intergenic 30.0%
GTAGGGTTGCATATATATAT+TGG + chr5_2:16653587-16653606 Msa0760230:intron 30.0%
GGTTGCATATATATATTGGA+GGG + chr5_2:16653591-16653610 Msa0760230:intron 30.0%
GTTGCATATATATATTGGAG+GGG + chr5_2:16653592-16653611 Msa0760230:intron 30.0%
GTATGAATGGTTGTTATAGT+GGG + chr5_2:16653650-16653669 Msa0760230:intron 30.0%
TATGAATGGTTGTTATAGTG+GGG + chr5_2:16653651-16653670 Msa0760230:intron 30.0%
!! ACTTTGAGTAGTTTTTGAAG+TGG + chr5_2:16654053-16654072 Msa0760230:intron 30.0%
AAGTGGAAAAGAGAAGATTA+AGG + chr5_2:16654070-16654089 Msa0760230:intron 30.0%
AGGAACAATGCACTTATAAT+GGG + chr5_2:16654190-16654209 Msa0760230:intron 30.0%
TTCACAAGCTTCTGAATTAT+AGG + chr5_2:16654702-16654721 Msa0760230:intron 30.0%
TCACAAGCTTCTGAATTATA+GGG + chr5_2:16654703-16654722 Msa0760230:intron 30.0%
CTTCTGAATTATAGGGAAAA+TGG + chr5_2:16654710-16654729 Msa0760230:intron 30.0%
!! CTTTGACTTTTGTATGTTTC+AGG + chr5_2:16655351-16655370 Msa0760230:intron 30.0%
!! AACATTTTAGCGGTTTTTAC+AGG + chr5_2:16655697-16655716 Msa0760230:CDS 30.0%
ATAACACCAGGAATACATAA+CGG - chr5_2:16655811-16655830 None:intergenic 30.0%
!!! GTGAATTGTGACAAGTTTTT+TGG + chr5_2:16656030-16656049 Msa0760230:CDS 30.0%
! TTGTGAAAAGGTTGGATTTT+TGG + chr5_2:16656100-16656119 Msa0760230:CDS 30.0%
CTTGTTTACAGCAATAATCT+TGG + chr5_2:16656162-16656181 Msa0760230:CDS 30.0%
AATATAGGAACTGCACTAAT+CGG + chr5_2:16656649-16656668 Msa0760230:CDS 30.0%
! TGTATAGAACATGATTTTGG+TGG + chr5_2:16657097-16657116 Msa0760230:three_prime_UTR 30.0%
TTTGCTTCTATTCATCACAA+TGG + chr5_2:16657227-16657246 Msa0760230:three_prime_UTR 30.0%
AAAGTAGAAGCAAATAAGGA+TGG + chr5_2:16657262-16657281 Msa0760230:three_prime_UTR 30.0%
! TATATTTGAAATGGAACCGA+AGG + chr5_2:16657464-16657483 Msa0760230:three_prime_UTR 30.0%
! ATATTTGAAATGGAACCGAA+GGG + chr5_2:16657465-16657484 Msa0760230:three_prime_UTR 30.0%
ATATGGATTCAAGCATTCAC+AGG + chr5_2:16653153-16653172 Msa0760230:CDS 35.0%
! CATGTTTATTGCTGCTTCAA+TGG + chr5_2:16653332-16653351 Msa0760230:CDS 35.0%
!!! CATCACTTTGCCTTATTTTC+TGG + chr5_2:16653398-16653417 Msa0760230:CDS 35.0%
!! AAGGAAGGTACCAGAAAATA+AGG - chr5_2:16653411-16653430 None:intergenic 35.0%
TATAGGGTAAAGGAAAAGGA+AGG - chr5_2:16653426-16653445 None:intergenic 35.0%
GGGTTGCATATATATATTGG+AGG + chr5_2:16653590-16653609 Msa0760230:intron 35.0%
GGTATGAATGGTTGTTATAG+TGG + chr5_2:16653649-16653668 Msa0760230:intron 35.0%
TCGAAGAATCTACTAGTACT+AGG + chr5_2:16654167-16654186 Msa0760230:intron 35.0%
AAGAATCTACTAGTACTAGG+AGG + chr5_2:16654170-16654189 Msa0760230:intron 35.0%
GAGGAACAATGCACTTATAA+TGG + chr5_2:16654189-16654208 Msa0760230:intron 35.0%
!! TATAATGGGTGTTAGATGTG+TGG + chr5_2:16654204-16654223 Msa0760230:intron 35.0%
!!! AAGGACGTGTGAGATTTTTT+AGG - chr5_2:16654417-16654436 None:intergenic 35.0%
!! CACACGTCCTTTTCATTTTT+AGG + chr5_2:16654426-16654445 Msa0760230:intron 35.0%
TTGAACGTACACAGTTGAAA+AGG - chr5_2:16654453-16654472 None:intergenic 35.0%
!! TGAGTTCTAGAATCAGCATT+TGG - chr5_2:16654499-16654518 None:intergenic 35.0%
! ATAGATGTCCGAGTTTTCAA+GGG + chr5_2:16654944-16654963 Msa0760230:intron 35.0%
ACTATTTGAAAGGACTCTAG+TGG + chr5_2:16655093-16655112 Msa0760230:intron 35.0%
TAGTGGAGATAGTACAAAGT+AGG + chr5_2:16655110-16655129 Msa0760230:intron 35.0%
TAGTACAAAGTAGGTTCAAG+AGG + chr5_2:16655119-16655138 Msa0760230:intron 35.0%
!!! TTTTTTCTGTGTCTGTTGAG+TGG + chr5_2:16655376-16655395 Msa0760230:CDS 35.0%
ATGCTAAGGATCTGTTAACT+GGG - chr5_2:16655456-16655475 None:intergenic 35.0%
AATGCTAAGGATCTGTTAAC+TGG - chr5_2:16655457-16655476 None:intergenic 35.0%
AGTTAACAGATCCTTAGCAT+TGG + chr5_2:16655456-16655475 Msa0760230:CDS 35.0%
! GATAGAGTTGATCTGATGAA+GGG - chr5_2:16655546-16655565 None:intergenic 35.0%
! AGATAGAGTTGATCTGATGA+AGG - chr5_2:16655547-16655566 None:intergenic 35.0%
!! AAGTTGATGAGGCAAAGATT+AGG - chr5_2:16655732-16655751 None:intergenic 35.0%
GTGTTATCTATGCTAGAGAT+TGG + chr5_2:16655824-16655843 Msa0760230:CDS 35.0%
! TATATTGCATATTTCTGCGG+AGG + chr5_2:16656129-16656148 Msa0760230:CDS 35.0%
TATTCATCGTTCTCCTTCTT+TGG + chr5_2:16656240-16656259 Msa0760230:CDS 35.0%
ACTTACTTTCGAATGTAGTC+AGG - chr5_2:16656285-16656304 None:intergenic 35.0%
GGGACTGACAGTAAATATTT+CGG + chr5_2:16656517-16656536 Msa0760230:intron 35.0%
AGTGCTATGGCACTTAATAT+AGG + chr5_2:16656634-16656653 Msa0760230:CDS 35.0%
!! TCCAAATAGCTCTGATGTAA+CGG - chr5_2:16656710-16656729 None:intergenic 35.0%
!! ATCCCTTCTCTATGGTTTTA+TGG + chr5_2:16656783-16656802 Msa0760230:CDS 35.0%
AGCCATAAAACCATAGAGAA+GGG - chr5_2:16656788-16656807 None:intergenic 35.0%
TTATGATGCTAACGCTATCT+CGG + chr5_2:16656816-16656835 Msa0760230:CDS 35.0%
TCTGATTCATTGGTATGCAT+GGG + chr5_2:16656865-16656884 Msa0760230:CDS 35.0%
!! GCTATTTCTGGACATTTGTA+TGG + chr5_2:16656896-16656915 Msa0760230:CDS 35.0%
! ATTTCTGGACATTTGTATGG+TGG + chr5_2:16656899-16656918 Msa0760230:CDS 35.0%
TTTCTGGACATTTGTATGGT+GGG + chr5_2:16656900-16656919 Msa0760230:CDS 35.0%
TGGGGATGTATATCTATCAT+AGG + chr5_2:16656919-16656938 Msa0760230:CDS 35.0%
ATCCTAGCTTAATGTGATTG+AGG + chr5_2:16657169-16657188 Msa0760230:three_prime_UTR 35.0%
TCACAGTCTCAAATTTCACA+AGG - chr5_2:16657324-16657343 None:intergenic 35.0%
! CTTTGGTTTCGTACATTGTG+TGG - chr5_2:16652981-16653000 None:intergenic 40.0%
AACCAAAGCCACGTATAAAG+AGG + chr5_2:16652993-16653012 Msa0760230:CDS 40.0%
TCTATCTCTTCTTCCTAGGA+GGG - chr5_2:16653064-16653083 None:intergenic 40.0%
TCTCTCTATCTCTTCTTCCT+AGG - chr5_2:16653068-16653087 None:intergenic 40.0%
TGGCAGGACAATCAAGAAAA+TGG + chr5_2:16653112-16653131 Msa0760230:CDS 40.0%
! AGTGACATGGGTAAAGTGTT+TGG + chr5_2:16653264-16653283 Msa0760230:CDS 40.0%
! ACATGGGTAAAGTGTTTGGT+TGG + chr5_2:16653268-16653287 Msa0760230:CDS 40.0%
!! AAAGTGTTTGGTTGGTCTTC+TGG + chr5_2:16653276-16653295 Msa0760230:CDS 40.0%
!! TCAATGGGTCTTGTTGGTTA+TGG + chr5_2:16653348-16653367 Msa0760230:CDS 40.0%
TCAGTTGTTCTCTTGACTGA+TGG + chr5_2:16653618-16653637 Msa0760230:intron 40.0%
CAGTTGTTCTCTTGACTGAT+GGG + chr5_2:16653619-16653638 Msa0760230:intron 40.0%
!!! GACGTGTGAGATTTTTTAGG+AGG - chr5_2:16654414-16654433 None:intergenic 40.0%
TTCAACTGTGTACGTTCAAC+TGG + chr5_2:16654454-16654473 Msa0760230:intron 40.0%
!! GTTAAGTTGGTTGAGTTCTG+TGG - chr5_2:16654592-16654611 None:intergenic 40.0%
! CATAGATGTCCGAGTTTTCA+AGG + chr5_2:16654943-16654962 Msa0760230:intron 40.0%
!! TAGATGTCCGAGTTTTCAAG+GGG + chr5_2:16654945-16654964 Msa0760230:intron 40.0%
AAAACTCAGTATCCGATCCA+AGG - chr5_2:16655003-16655022 None:intergenic 40.0%
GGAGAAGCGGATATCTTAAA+TGG + chr5_2:16655140-16655159 Msa0760230:intron 40.0%
CATAGAGTTGCAACATCTAG+AGG + chr5_2:16655298-16655317 Msa0760230:intron 40.0%
GAATGAGTGTCTGATAAAGG+CGG - chr5_2:16655634-16655653 None:intergenic 40.0%
GGAGAATGAGTGTCTGATAA+AGG - chr5_2:16655637-16655656 None:intergenic 40.0%
!! TGCTTCATCAGAAGTTGATG+AGG - chr5_2:16655743-16655762 None:intergenic 40.0%
ATCTTGCCGTTATGTATTCC+TGG + chr5_2:16655802-16655821 Msa0760230:CDS 40.0%
TCTCTAGCATAGATAACACC+AGG - chr5_2:16655823-16655842 None:intergenic 40.0%
!!! TTGTGACAAGTTTTTTGGGC+AGG + chr5_2:16656035-16656054 Msa0760230:CDS 40.0%
!!! GTTTTTTGGGCAGGATCAAT+TGG + chr5_2:16656044-16656063 Msa0760230:CDS 40.0%
CAGGATCAATTGGAAATGCT+GGG + chr5_2:16656054-16656073 Msa0760230:CDS 40.0%
! TATTTCTGCGGAGGTACAAT+TGG + chr5_2:16656138-16656157 Msa0760230:CDS 40.0%
GGACAGATAGCTCAATCTTT+AGG + chr5_2:16656183-16656202 Msa0760230:CDS 40.0%
GAGTCGATGTTCTATAACTG+TGG - chr5_2:16656209-16656228 None:intergenic 40.0%
AAGTTCTACTTTGCAAGGAC+AGG + chr5_2:16656550-16656569 Msa0760230:CDS 40.0%
AGTTCTACTTTGCAAGGACA+GGG + chr5_2:16656551-16656570 Msa0760230:CDS 40.0%
AAGATGAATGCAATTGGGGT+TGG - chr5_2:16656598-16656617 None:intergenic 40.0%
CAGCAAGATGAATGCAATTG+GGG - chr5_2:16656602-16656621 None:intergenic 40.0%
CCAGCAAGATGAATGCAATT+GGG - chr5_2:16656603-16656622 None:intergenic 40.0%
TTTCATATTTGCAGCTGCAG+TGG + chr5_2:16656684-16656703 Msa0760230:CDS 40.0%
TGATTGACACTCAAACTGTC+AGG - chr5_2:16656733-16656752 None:intergenic 40.0%
CAGCCATAAAACCATAGAGA+AGG - chr5_2:16656789-16656808 None:intergenic 40.0%
GTCTGATTCATTGGTATGCA+TGG + chr5_2:16656864-16656883 Msa0760230:CDS 40.0%
TTCTGGACATTTGTATGGTG+GGG + chr5_2:16656901-16656920 Msa0760230:CDS 40.0%
CTCCTCAATCACATTAAGCT+AGG - chr5_2:16657174-16657193 None:intergenic 40.0%
GAGGAGAGATATAGATTCAG+AGG + chr5_2:16657188-16657207 Msa0760230:three_prime_UTR 40.0%
GCAAATAAGGATGGAAGCTT+TGG + chr5_2:16657271-16657290 Msa0760230:three_prime_UTR 40.0%
!! ATAAGGATGGAAGCTTTGGA+TGG + chr5_2:16657275-16657294 Msa0760230:three_prime_UTR 40.0%
GGATCAGGTTAGAGGAAATA+TGG + chr5_2:16657296-16657315 Msa0760230:three_prime_UTR 40.0%
TGCCTCTTTATACGTGGCTT+TGG - chr5_2:16652998-16653017 None:intergenic 45.0%
TGTGAGTGCCTCTTTATACG+TGG - chr5_2:16653004-16653023 None:intergenic 45.0%
CTCTATCTCTTCTTCCTAGG+AGG - chr5_2:16653065-16653084 None:intergenic 45.0%
CTAGCAACTGCAAGTGACAT+GGG + chr5_2:16653252-16653271 Msa0760230:CDS 45.0%
TTGTTCTCTTGACTGATGGG+TGG + chr5_2:16653622-16653641 Msa0760230:intron 45.0%
ATGGGTGGAGATGGTATGAA+TGG + chr5_2:16653637-16653656 Msa0760230:intron 45.0%
ATCGTTGCACAGCAAATAGC+TGG - chr5_2:16654233-16654252 None:intergenic 45.0%
! TTTGGAGCCTGGGAGTTATT+GGG - chr5_2:16654481-16654500 None:intergenic 45.0%
! ATTTGGAGCCTGGGAGTTAT+TGG - chr5_2:16654482-16654501 None:intergenic 45.0%
! AGAATCAGCATTTGGAGCCT+GGG - chr5_2:16654491-16654510 None:intergenic 45.0%
! TAGAATCAGCATTTGGAGCC+TGG - chr5_2:16654492-16654511 None:intergenic 45.0%
!! AGATGTCCGAGTTTTCAAGG+GGG + chr5_2:16654946-16654965 Msa0760230:intron 45.0%
ATTGGTCCCCTCGAATTAGT+CGG + chr5_2:16654976-16654995 Msa0760230:intron 45.0%
GAATTAGTCGGTCCTTGGAT+CGG + chr5_2:16654988-16655007 Msa0760230:intron 45.0%
AGTAGGTTCAAGAGGAGAAG+CGG + chr5_2:16655127-16655146 Msa0760230:intron 45.0%
GCACTCACTGTGAGTTTCAA+TGG + chr5_2:16655478-16655497 Msa0760230:CDS 45.0%
!! GAAGAGGGACAAGAGCATTT+AGG - chr5_2:16655573-16655592 None:intergenic 45.0%
! TATAACCGAGTTCTGACGAG+CGG - chr5_2:16655665-16655684 None:intergenic 45.0%
CTTCTGATGAAGCAACATCG+AGG + chr5_2:16655749-16655768 Msa0760230:CDS 45.0%
!! AGCTAGAGTTTTCGACTCGA+AGG - chr5_2:16655873-16655892 None:intergenic 45.0%
! CATATCCGTTTTCACCAAGC+AGG - chr5_2:16655984-16656003 None:intergenic 45.0%
! CTGCTTGGTGAAAACGGATA+TGG + chr5_2:16655982-16656001 Msa0760230:CDS 45.0%
GCAGGATCAATTGGAAATGC+TGG + chr5_2:16656053-16656072 Msa0760230:CDS 45.0%
! CAACCTTTTCACAAGAACCG+CGG - chr5_2:16656094-16656113 None:intergenic 45.0%
TGAAAGCAAGCGTCCAAAGA+AGG - chr5_2:16656256-16656275 None:intergenic 45.0%
GTAAAATTGGCCGAACTCTG+TGG + chr5_2:16656382-16656401 Msa0760230:intron 45.0%
CGTGATTTGACCACAGAGTT+CGG - chr5_2:16656395-16656414 None:intergenic 45.0%
GCAGCAAGTTCTACTTTGCA+AGG + chr5_2:16656545-16656564 Msa0760230:intron 45.0%
!! TGGGGTTGGTAAAAGTGCAA+TGG - chr5_2:16656584-16656603 None:intergenic 45.0%
CCCAATTGCATTCATCTTGC+TGG + chr5_2:16656600-16656619 Msa0760230:CDS 45.0%
GCCAGCAAGATGAATGCAAT+TGG - chr5_2:16656604-16656623 None:intergenic 45.0%
!! GGCTTCATCAGAAAGTGCTA+TGG + chr5_2:16656621-16656640 Msa0760230:CDS 45.0%
GCCGTTACATCAGAGCTATT+TGG + chr5_2:16656706-16656725 Msa0760230:CDS 45.0%
CCATAGAGAAGGGATCCAAT+TGG - chr5_2:16656778-16656797 None:intergenic 45.0%
CCAATTGGATCCCTTCTCTA+TGG + chr5_2:16656775-16656794 Msa0760230:CDS 45.0%
!! TGGGACGACAATGCTATTTC+TGG + chr5_2:16656884-16656903 Msa0760230:CDS 45.0%
GTCAGAAGTTACGACACAGT+CGG - chr5_2:16657024-16657043 None:intergenic 45.0%
TCGTAACTTCTGACAACGCA+AGG + chr5_2:16657030-16657049 Msa0760230:exon 45.0%
! TTTGGTGGCAGAGTTAAGCA+AGG + chr5_2:16657112-16657131 Msa0760230:three_prime_UTR 45.0%
!! ATGGAAGCTTTGGATGGATC+AGG + chr5_2:16657281-16657300 Msa0760230:three_prime_UTR 45.0%
CTTTGGATGGATCAGGTTAG+AGG + chr5_2:16657288-16657307 Msa0760230:three_prime_UTR 45.0%
AAATGGAACCGAAGGGACAA+GGG + chr5_2:16657472-16657491 Msa0760230:three_prime_UTR 45.0%
!!! TATCATTATTTTTTTTTTAT+AGG - chr5_2:16654614-16654633 None:intergenic 5.0%
!!! TTTTCATTATTTTTTTTATA+GGG - chr5_2:16654647-16654666 None:intergenic 5.0%
!!! ATTTTCATTATTTTTTTTAT+AGG - chr5_2:16654648-16654667 None:intergenic 5.0%
AGAAGTGGGAGAGAAGTGGT+TGG - chr5_2:16653033-16653052 None:intergenic 50.0%
ATGGAGAAGTGGGAGAGAAG+TGG - chr5_2:16653037-16653056 None:intergenic 50.0%
TTCTTCCTAGGAGGGAGGAA+TGG - chr5_2:16653056-16653075 None:intergenic 50.0%
ATCTCTTCTTCCTAGGAGGG+AGG - chr5_2:16653061-16653080 None:intergenic 50.0%
GAGAGAGAGAGAGTCAGTGA+TGG + chr5_2:16653092-16653111 Msa0760230:CDS 50.0%
! CCATGTCACTTGCAGTTGCT+AGG - chr5_2:16653254-16653273 None:intergenic 50.0%
CCTAGCAACTGCAAGTGACA+TGG + chr5_2:16653251-16653270 Msa0760230:CDS 50.0%
! GCTGCTTCAATGGGTCTTGT+TGG + chr5_2:16653342-16653361 Msa0760230:CDS 50.0%
! TCTTGACTGATGGGTGGAGA+TGG + chr5_2:16653628-16653647 Msa0760230:intron 50.0%
GTTGCACAGCAAATAGCTGG+AGG - chr5_2:16654230-16654249 None:intergenic 50.0%
AACTGGTCCCAATAACTCCC+AGG + chr5_2:16654471-16654490 Msa0760230:intron 50.0%
TGGTTGAGTTCTGTGGACGT+TGG - chr5_2:16654585-16654604 None:intergenic 50.0%
CAAGGACCGACTAATTCGAG+GGG - chr5_2:16654985-16655004 None:intergenic 50.0%
CCAAGGACCGACTAATTCGA+GGG - chr5_2:16654986-16655005 None:intergenic 50.0%
TCCAAGGACCGACTAATTCG+AGG - chr5_2:16654987-16655006 None:intergenic 50.0%
TGAGTGGCTGCAGTATCTGT+TGG + chr5_2:16655392-16655411 Msa0760230:CDS 50.0%
CACAGTGAGTGCCAATGCTA+AGG - chr5_2:16655470-16655489 None:intergenic 50.0%
CTGCGATCGAAGTGAGAAGA+GGG - chr5_2:16655588-16655607 None:intergenic 50.0%
GCAACATCGAGGCTCTACTT+TGG + chr5_2:16655760-16655779 Msa0760230:CDS 50.0%
ACATCGAGGCTCTACTTTGG+TGG + chr5_2:16655763-16655782 Msa0760230:CDS 50.0%
!! GAGTTTTCGACTCGAAGGCT+CGG - chr5_2:16655868-16655887 None:intergenic 50.0%
! CAAGGCCTGCTTGGTGAAAA+CGG + chr5_2:16655976-16655995 Msa0760230:CDS 50.0%
GGTACTCAGAGAGCAAAGAG+TGG + chr5_2:16656003-16656022 Msa0760230:CDS 50.0%
CGCGGTTCTTGTGAAAAGGT+TGG + chr5_2:16656092-16656111 Msa0760230:CDS 50.0%
TCTACTTTGCAAGGACAGGG+TGG + chr5_2:16656554-16656573 Msa0760230:CDS 50.0%
CAGTCGGTTGCGCTGAAATA+CGG - chr5_2:16657008-16657027 None:intergenic 50.0%
GAAATGGAACCGAAGGGACA+AGG + chr5_2:16657471-16657490 Msa0760230:three_prime_UTR 50.0%
AGTGACAACCCTTGTCCCTT+CGG - chr5_2:16657483-16657502 None:intergenic 50.0%
GGAGGGAGGAATGGAGAAGT+GGG - chr5_2:16653047-16653066 None:intergenic 55.0%
AGGAGGGAGGAATGGAGAAG+TGG - chr5_2:16653048-16653067 None:intergenic 55.0%
CTTCTCCATTCCTCCCTCCT+AGG + chr5_2:16653048-16653067 Msa0760230:CDS 55.0%
GAGAGAGAGTCAGTGATGGC+AGG + chr5_2:16653096-16653115 Msa0760230:CDS 55.0%
!! TGTCCGAGTTTTCAAGGGGG+CGG + chr5_2:16654949-16654968 Msa0760230:intron 55.0%
CCCTCGAATTAGTCGGTCCT+TGG + chr5_2:16654983-16655002 Msa0760230:intron 55.0%
GCTGCGATCGAAGTGAGAAG+AGG - chr5_2:16655589-16655608 None:intergenic 55.0%
AAAGGCGGCTGGCGAAGAAT+CGG - chr5_2:16655619-16655638 None:intergenic 55.0%
GAGTGTCTGATAAAGGCGGC+TGG - chr5_2:16655630-16655649 None:intergenic 55.0%
TTACGCGTCAAAGCAGCGCT+CGG + chr5_2:16655938-16655957 Msa0760230:CDS 55.0%
CGGAGCAATGGAGATGCTCA+AGG + chr5_2:16655958-16655977 Msa0760230:CDS 55.0%
GGGAGAAGAACATTCAGCCG+CGG + chr5_2:16656074-16656093 Msa0760230:CDS 55.0%
CAGCCGCGGTTCTTGTGAAA+AGG + chr5_2:16656088-16656107 Msa0760230:CDS 55.0%
GCACTAATCGGTCTGAGCTC+AGG + chr5_2:16656661-16656680 Msa0760230:CDS 55.0%
GCTATCTCGGCACCTGGTAA+TGG + chr5_2:16656829-16656848 Msa0760230:CDS 55.0%
CCACCGCCCCCTTGAAAACT+CGG - chr5_2:16654955-16654974 None:intergenic 60.0%
!! CGAGTTTTCAAGGGGGCGGT+GGG + chr5_2:16654953-16654972 Msa0760230:intron 60.0%
TTTCAAGGGGGCGGTGGGAT+TGG + chr5_2:16654958-16654977 Msa0760230:intron 60.0%
ACACGCCGCTCGTCAGAACT+CGG + chr5_2:16655657-16655676 Msa0760230:CDS 60.0%
GAAGGCTCGGATGAACAGCG+CGG - chr5_2:16655855-16655874 None:intergenic 60.0%
! GAGCGCTGCTTTGACGCGTA+AGG - chr5_2:16655939-16655958 None:intergenic 60.0%
CAAAGCAGCGCTCGGAGCAA+TGG + chr5_2:16655946-16655965 Msa0760230:CDS 60.0%
GGAGATGCTCAAGGCCTGCT+TGG + chr5_2:16655967-16655986 Msa0760230:CDS 60.0%
GCTAACGCTATCTCGGCACC+TGG + chr5_2:16656823-16656842 Msa0760230:CDS 60.0%
!! CCGAGTTTTCAAGGGGGCGG+TGG + chr5_2:16654952-16654971 Msa0760230:intron 65.0%
! GAGTTCTGACGAGCGGCGTG+TGG - chr5_2:16655658-16655677 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 16652919 16657518 16652919 ID=Msa0760230;Name=Msa0760230
chr5_2 mRNA 16652919 16657518 16652919 ID=Msa0760230-mRNA-1;Parent=Msa0760230;Name=Msa0760230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=66|1|1|1|1|1|3|483|615
chr5_2 exon 16652919 16653419 16652919 ID=Msa0760230-mRNA-1:exon:7331;Parent=Msa0760230-mRNA-1
chr5_2 exon 16655373 16656298 16655373 ID=Msa0760230-mRNA-1:exon:7332;Parent=Msa0760230-mRNA-1
chr5_2 exon 16656549 16657518 16656549 ID=Msa0760230-mRNA-1:exon:7333;Parent=Msa0760230-mRNA-1
chr5_2 five_prime_UTR 16652919 16652984 16652919 ID=Msa0760230-mRNA-1:five_prime_utr;Parent=Msa0760230-mRNA-1
chr5_2 CDS 16652985 16653419 16652985 ID=Msa0760230-mRNA-1:cds;Parent=Msa0760230-mRNA-1
chr5_2 CDS 16655373 16656298 16655373 ID=Msa0760230-mRNA-1:cds;Parent=Msa0760230-mRNA-1
chr5_2 CDS 16656549 16657035 16656549 ID=Msa0760230-mRNA-1:cds;Parent=Msa0760230-mRNA-1
chr5_2 three_prime_UTR 16657036 16657518 16657036 ID=Msa0760230-mRNA-1:three_prime_utr;Parent=Msa0760230-mRNA-1
Gene Sequence

>Msa0760230

ATGTACGAAACCAAAGCCACGTATAAAGAGGCACTCACACACACACCAACCACTTCTCTCCCACTTCTCCATTCCTCCCTCCTAGGAAGAAGAGATAGAGAGATAGAGAGAGAGAGAGAGTCAGTGATGGCAGGACAATCAAGAAAATGGATGATACTAATAGCAACAATATGGATTCAAGCATTCACAGGAACAAATTTTGATTTCTCATCATACTCATCAACAATGAAATCTGTACTCAAAATCTCACAAGTGCAACTTAACTACCTAGCAACTGCAAGTGACATGGGTAAAGTGTTTGGTTGGTCTTCTGGTCTTGCTCTTATGTATCTTCCAATCTCTCTTGTCATGTTTATTGCTGCTTCAATGGGTCTTGTTGGTTATGGTCTTCAATTTCTTCTCATTAATGACGTCATCACTTTGCCTTATTTTCTGGTTTTTTTTCTGTGTCTGTTGAGTGGCTGCAGTATCTGTTGGTTCAACACAGTATGTTTTGTTCTCTGCATCAAAAACTTCCCAGTTAACAGATCCTTAGCATTGGCACTCACTGTGAGTTTCAATGGTGTAAGTGCAGCACTCTACACTCTAGCTGCAAATTCAATAAACCCTTCATCAGATCAACTCTATCTTCTCCTAAATGCTCTTGTCCCTCTTCTCACTTCGATCGCAGCATTACTTCCGATTCTTCGCCAGCCGCCTTTATCAGACACTCATTCTCCACACGCCGCTCGTCAGAACTCGGTTATATTTCTAACATTGAACATTTTAGCGGTTTTTACAGGAATTTATCTCCTAATCTTTGCCTCATCAACTTCTGATGAAGCAACATCGAGGCTCTACTTTGGTGGAGCTCTTGTACTTTTAATCTTGCCGTTATGTATTCCTGGTGTTATCTATGCTAGAGATTGGTTTCACCGCGCTGTTCATCCGAGCCTTCGAGTCGAAAACTCTAGCTTCATTCTTGTTCATGTTAATGATCTTGAGCTTCACAAAGAACTCCTTACGCGTCAAAGCAGCGCTCGGAGCAATGGAGATGCTCAAGGCCTGCTTGGTGAAAACGGATATGGTACTCAGAGAGCAAAGAGTGGTGATGTGAATTGTGACAAGTTTTTTGGGCAGGATCAATTGGAAATGCTGGGAGAAGAACATTCAGCCGCGGTTCTTGTGAAAAGGTTGGATTTTTGGCTTTATTATATTGCATATTTCTGCGGAGGTACAATTGGTCTTGTTTACAGCAATAATCTTGGACAGATAGCTCAATCTTTAGGCCACAGTTATAGAACATCGACTCTTGTGACGCTATATTCATCGTTCTCCTTCTTTGGACGCTTGCTTTCAGCTATGCCTGACTACATTCGAAACAAGTTCTACTTTGCAAGGACAGGGTGGCTAACCATTGCACTTTTACCAACCCCAATTGCATTCATCTTGCTGGCTTCATCAGAAAGTGCTATGGCACTTAATATAGGAACTGCACTAATCGGTCTGAGCTCAGGTTTCATATTTGCAGCTGCAGTGGCCGTTACATCAGAGCTATTTGGACCTGACAGTTTGAGTGTCAATCACAACATTCTCATAACAAATATTCCAATTGGATCCCTTCTCTATGGTTTTATGGCTGCAATAGTTTATGATGCTAACGCTATCTCGGCACCTGGTAATGGAAACATAATAATGTCTGATTCATTGGTATGCATGGGACGACAATGCTATTTCTGGACATTTGTATGGTGGGGATGTATATCTATCATAGGATTAATTTCTAGTTTGCTGCTATTCTTGAGAACCAAACATGCTTATGATTGTTTTGAGCGACACCGTATTTCAGCGCAACCGACTGTGTCGTAA

Protein sequence

>Msa0760230

MYETKATYKEALTHTPTTSLPLLHSSLLGRRDREIERERESVMAGQSRKWMILIATIWIQAFTGTNFDFSSYSSTMKSVLKISQVQLNYLATASDMGKVFGWSSGLALMYLPISLVMFIAASMGLVGYGLQFLLINDVITLPYFLVFFLCLLSGCSICWFNTVCFVLCIKNFPVNRSLALALTVSFNGVSAALYTLAANSINPSSDQLYLLLNALVPLLTSIAALLPILRQPPLSDTHSPHAARQNSVIFLTLNILAVFTGIYLLIFASSTSDEATSRLYFGGALVLLILPLCIPGVIYARDWFHRAVHPSLRVENSSFILVHVNDLELHKELLTRQSSARSNGDAQGLLGENGYGTQRAKSGDVNCDKFFGQDQLEMLGEEHSAAVLVKRLDFWLYYIAYFCGGTIGLVYSNNLGQIAQSLGHSYRTSTLVTLYSSFSFFGRLLSAMPDYIRNKFYFARTGWLTIALLPTPIAFILLASSESAMALNIGTALIGLSSGFIFAAAVAVTSELFGPDSLSVNHNILITNIPIGSLLYGFMAAIVYDANAISAPGNGNIIMSDSLVCMGRQCYFWTFVWWGCISIIGLISSLLLFLRTKHAYDCFERHRISAQPTVS*